BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2419355.2.1
(1174 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CO173742.1|CO173742 NDL1_38_G11.g1_A029 Needles control ... 182 2e-044
gb|DR688415.1|DR688415 EST1078499 Normalized pine embryo li... 180 9e-044
gb|DR692874.1|DR692874 EST1082962 Normalized pine embryo li... 165 5e-039
gb|DR013680.1|DR013680 HEAT1_20_G06.g1_A029 Root at 37 C fo... 92 6e-017
gb|DT634813.1|DT634813 EST1149744 Normalized pine embryo li... 82 6e-014
gb|CO173695.1|CO173695 NDL1_38_G11.b1_A029 Needles control ... 64 1e-008
gb|DR013601.1|DR013601 HEAT1_20_G06.b1_A029 Root at 37 C fo... 64 1e-008
gb|DR385447.1|DR385447 RTHG1_8_E11.g1_A029 Roots plus added... 40 0.20
gb|DR387264.1|DR387264 RTHG1_20_C12.g1_A029 Roots plus adde... 40 0.20
>gb|CO173742.1|CO173742 NDL1_38_G11.g1_A029 Needles control Pinus taeda cDNA clone
NDL1_38_G11_A029 5', mRNA sequence
Length = 548
Score = 182 bits (92), Expect = 2e-044
Identities = 227/271 (83%), Gaps = 2/271 (0%)
Strand = Plus / Plus
Query: 63 ggaacaggaaagacaatgctggcaaaagcggtcgctactgagtgcaaaaccaccttcttc 122
||||| |||||||||||||| || || || || ||||||||||||||||| || ||||||
Sbjct: 53 ggaactggaaagacaatgcttgccaaggcagtggctactgagtgcaaaacaacattcttc 112
Query: 123 aacatttcagcatcatcaattgtcagcaaatggcgtggagattcagagaagcttgtcaaa 182
||||| || |||||||| ||||| ||||| ||||| || |||||||| || ||||| |||
Sbjct: 113 aacatatctgcatcatccattgttagcaagtggcgcggtgattcagaaaaacttgtaaaa 172
Query: 183 gttctgtttgagcttgctaggcatcatgcaccatccacaatattccttgatgaaatagat 242
|| || |||||| |||| || |||||||||||||| ||||| || || |||||||| |||
Sbjct: 173 gtactttttgaggttgcaagacatcatgcaccatcaacaatctttctagatgaaattgat 232
Query: 243 gctatcatcagccagcgtggtgaagctcgcagtgagcatgaggctagtcgtcgcttgaag 302
||||| || || || |||||||||| ||||||||||| || || ||| | || || |||
Sbjct: 233 gctattattagtcaccgtggtgaaggccgcagtgagcacgaagcaagtagacgtttaaag 292
Query: 303 --actgagctacttattcagatggatggttt 331
|||||||||||||| ||||||||||||||
Sbjct: 293 aaactgagctacttatccagatggatggttt 323
Score = 40.1 bits (20), Expect = 0.20
Identities = 32/36 (88%)
Strand = Plus / Plus
Query: 522 gttgaaaagaccgaaggttactctggttcagatatt 557
||||||| ||| ||||| || |||||||||||||||
Sbjct: 513 gttgaaaggacagaaggctattctggttcagatatt 548
>gb|DR688415.1|DR688415 EST1078499 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAC607 3' end, mRNA sequence
Length = 913
Score = 180 bits (91), Expect = 9e-044
Identities = 230/275 (83%), Gaps = 1/275 (0%)
Strand = Plus / Plus
Query: 51 tttggccccccaggaacaggaaagacaatgctggcaaaagcggtcgctactgagtgcaaa 110
|||||||| || ||||| |||||||||||||| || || || || |||||||||||||||
Sbjct: 587 tttggcccacctggaactggaaagacaatgcttgccaaggcagtggctactgagtgcaaa 646
Query: 111 accaccttcttcaacatttcagcatcatcaattgtcagcaaatggcgtggagattcagag 170
|| || ||||||||||| || |||||||| ||||| ||||| ||||| || ||||||||
Sbjct: 647 acaacattcttcaacatatctgcatcatccattgttagcaagtggcgcggtgattcagaa 706
Query: 171 aagcttgtcaaagttctgtttgagcttgctaggcatcatgcaccatccacaatattcctt 230
|| ||||| ||||| || |||||| |||| || |||||||||||||| ||||| || ||
Sbjct: 707 aaacttgtaaaagtactttttgaggttgcaagacatcatgcaccatcaacaatctttcta 766
Query: 231 gatgaaatagatgctatcatcagccagcgtggtg-aagctcgcagtgagcatgaggctag 289
|||||||| |||||||| || || || ||||||| ||| ||||||||||| || || ||
Sbjct: 767 gatgaaattgatgctattattagtcaccgtggtgaaaggccgcagtgagcacgaagcaag 826
Query: 290 tcgtcgcttgaagactgagctacttattcagatgg 324
| | || || ||||||||||||||||| |||||||
Sbjct: 827 tagacgtttaaagactgagctacttatccagatgg 861
>gb|DR692874.1|DR692874 EST1082962 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWADR40 3' end, mRNA sequence
Length = 848
Score = 165 bits (83), Expect = 5e-039
Identities = 219/263 (83%), Gaps = 1/263 (0%)
Strand = Plus / Plus
Query: 51 tttggccccccaggaacaggaaagacaatgctggcaaaagcggtcgctactgagtgcaaa 110
|||||||| || ||||| |||||||||||||| || || || || |||||||||||||||
Sbjct: 586 tttggcccacctggaactggaaagacaatgcttgccaaggcagtggctactgagtgcaaa 645
Query: 111 accaccttcttcaacatttcagcatcatcaattgtcagcaaatggcgtggagattcagag 170
|| || ||||||||||| || |||||||| ||||| ||||| ||||| || ||||||||
Sbjct: 646 acaacattcttcaacatatctgcatcatccattgttagcaagtggcgcggtgattcaga- 704
Query: 171 aagcttgtcaaagttctgtttgagcttgctaggcatcatgcaccatccacaatattcctt 230
|| ||||| ||||| || |||||| |||| || |||||||||||||| ||||| || ||
Sbjct: 705 aaacttgtaaaagtactttttgaggttgcaagacatcatgcaccatcaacaatctttcta 764
Query: 231 gatgaaatagatgctatcatcagccagcgtggtgaagctcgcagtgagcatgaggctagt 290
|||||||| |||||||| || || || ||||||||| ||||||||||| || || |||
Sbjct: 765 gatgaaattgatgctattattagtcaccgtggtgaaaggcgcagtgagcacgaagcaagt 824
Query: 291 cgtcgcttgaagactgagctact 313
| || || ||||||||||||||
Sbjct: 825 agacgtttaaagactgagctact 847
>gb|DR013680.1|DR013680 HEAT1_20_G06.g1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_20_G06_A029 5', mRNA sequence
Length = 629
Score = 91.7 bits (46), Expect = 6e-017
Identities = 91/106 (85%)
Strand = Plus / Plus
Query: 51 tttggccccccaggaacaggaaagacaatgctggcaaaagcggtcgctactgagtgcaaa 110
|||||||| || ||||| |||||||||||||| || || || || |||||||||||||||
Sbjct: 524 tttggcccacctggaactggaaagacaatgcttgccaaggcagtggctactgagtgcaaa 583
Query: 111 accaccttcttcaacatttcagcatcatcaattgtcagcaaatggc 156
|| || ||||||||||| || |||||||| ||||| ||||| ||||
Sbjct: 584 acaacattcttcaacatatctgcatcatccattgttagcaagtggc 629
>gb|DT634813.1|DT634813 EST1149744 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMGA07 3' end, mRNA sequence
Length = 808
Score = 81.8 bits (41), Expect = 6e-014
Identities = 165/201 (82%), Gaps = 4/201 (1%)
Strand = Plus / Plus
Query: 51 tttggccccccaggaacaggaaagacaatgctggcaaaagcggtcgctactgagtgcaaa 110
|||||||| || ||||| |||||||||||||| || || || || |||||||||||||||
Sbjct: 599 tttggcccacctggaactggaaagacaatgcttgccaaggcagtggctactgagtgcaaa 658
Query: 111 accaccttcttcaacatttcagcatcatcaattgtcagcaaatgg-cgtggagattcaga 169
|| || ||||||||||| || |||||||| || || |||| ||| || || ||||||||
Sbjct: 659 acaacattcttcaacatatctgcatcatccatcgttagcaggtgggcgcggtgattcaga 718
Query: 170 gaagctt-gtcaaagttctgttt-gagc-ttgctaggcatcatgcaccatccacaatatt 226
|| ||| || ||||| || ||| ||| |||| || |||||||||||||| ||||| ||
Sbjct: 719 aaaactttgtaaaagtacttttttgagggttgcaagacatcatgcaccatcaacaatctt 778
Query: 227 ccttgatgaaatagatgctat 247
|| |||||||| ||||||||
Sbjct: 779 tctagatgaaattgatgctat 799
>gb|CO173695.1|CO173695 NDL1_38_G11.b1_A029 Needles control Pinus taeda cDNA clone
NDL1_38_G11_A029 3', mRNA sequence
Length = 767
Score = 63.9 bits (32), Expect = 1e-008
Identities = 56/64 (87%)
Strand = Plus / Plus
Query: 522 gttgaaaagaccgaaggttactctggttcagatattcgtctcgtgtgcaaagaagctgcc 581
||||||| ||| ||||| || |||||||||||||||||| | || ||||||||||||||
Sbjct: 139 gttgaaaggacagaaggctattctggttcagatattcgtttagtttgcaaagaagctgct 198
Query: 582 atgc 585
||||
Sbjct: 199 atgc 202
>gb|DR013601.1|DR013601 HEAT1_20_G06.b1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_20_G06_A029 3', mRNA sequence
Length = 685
Score = 63.9 bits (32), Expect = 1e-008
Identities = 56/64 (87%)
Strand = Plus / Plus
Query: 522 gttgaaaagaccgaaggttactctggttcagatattcgtctcgtgtgcaaagaagctgcc 581
||||||| ||| ||||| || |||||||||||||||||| | || ||||||||||||||
Sbjct: 107 gttgaaaggacagaaggctattctggttcagatattcgtttagtttgcaaagaagctgct 166
Query: 582 atgc 585
||||
Sbjct: 167 atgc 170
>gb|DR385447.1|DR385447 RTHG1_8_E11.g1_A029 Roots plus added mercury Pinus taeda cDNA clone
RTHG1_8_E11_A029 5', mRNA sequence
Length = 854
Score = 40.1 bits (20), Expect = 0.20
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 63 ggaacaggaaagacaatgctggcaaaag 90
|||| ||||||||||| |||||||||||
Sbjct: 756 ggaataggaaagacaacgctggcaaaag 783
>gb|DR387264.1|DR387264 RTHG1_20_C12.g1_A029 Roots plus added mercury Pinus taeda cDNA
clone RTHG1_20_C12_A029 5', mRNA sequence
Length = 783
Score = 40.1 bits (20), Expect = 0.20
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 63 ggaacaggaaagacaatgctggcaaaag 90
|||| ||||||||||| |||||||||||
Sbjct: 750 ggaataggaaagacaacgctggcaaaag 777
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 136,272
Number of Sequences: 355925
Number of extensions: 136272
Number of successful extensions: 36589
Number of sequences better than 0.5: 9
Number of HSP's better than 0.5 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 36575
Number of HSP's gapped (non-prelim): 11
length of query: 1174
length of database: 217,277,237
effective HSP length: 19
effective length of query: 1155
effective length of database: 210,514,662
effective search space: 243144434610
effective search space used: 243144434610
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)