BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2419155.2.3
(1354 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CO361030.1|CO361030 NDL2_2_E03.b1_A029 Needles control 2... 74 2e-011
gb|BF220886.1|BF220886 NXCI_155_C01_F NXCI (Nsf Xylem Compr... 72 7e-011
gb|BQ634753.1|BQ634753 NXRV072_H01_F NXRV (Nsf Xylem Root w... 72 7e-011
gb|BQ699858.1|BQ699858 NXRV122_E06_F NXRV (Nsf Xylem Root w... 72 7e-011
gb|CF397177.1|CF397177 RTDS3_2_A03.b2_A022 Drought-stressed... 72 7e-011
gb|CO163989.1|CO163989 FLD1_45_C09.b1_A029 Root flooded Pin... 72 7e-011
gb|CO164065.1|CO164065 FLD1_45_C09.g1_A029 Root flooded Pin... 72 7e-011
gb|CO196841.1|CO196841 GEO1_1_H10.g1_A029 Root gravitropism... 72 7e-011
gb|CO197238.1|CO197238 GEO1_4_G09.g1_A029 Root gravitropism... 72 7e-011
gb|CO361091.1|CO361091 NDL2_2_E03.g1_A029 Needles control 2... 72 7e-011
gb|CO368804.1|CO368804 RTK1_43_A05.b1_A029 Roots minus pota... 72 7e-011
gb|CO369018.1|CO369018 RTK1_44_A04.g1_A029 Roots minus pota... 72 7e-011
gb|CX715980.1|CX715980 RTPQ1_39_D09.b1_A032 Roots treated w... 72 7e-011
gb|DR050664.1|DR050664 RTBOR1_25_A01.b1_A029 Roots plus add... 72 7e-011
gb|DR072230.1|DR072230 RTDK1_24_H12.g1_A029 Roots, dark Pin... 72 7e-011
gb|DR089145.1|DR089145 RTAL1_6_G03.g1_A029 Roots plus added... 72 7e-011
gb|DR089371.1|DR089371 RTAL1_8_F06.b1_A029 Roots plus added... 72 7e-011
gb|DR089449.1|DR089449 RTAL1_8_F06.g1_A029 Roots plus added... 72 7e-011
gb|DR111877.1|DR111877 RTS1_20_H03.g1_A029 Roots minus sulf... 72 7e-011
gb|DR112231.1|DR112231 RTS1_26_F03.g1_A029 Roots minus sulf... 72 7e-011
gb|DR118027.1|DR118027 RTMG1_10_E07.g1_A029 Roots minus mag... 72 7e-011
gb|DR119060.1|DR119060 RTMG1_20_H06.g1_A029 Roots minus mag... 72 7e-011
gb|DR682526.1|DR682526 EST1072601 Normalized pine embryo li... 72 7e-011
gb|DR682527.1|DR682527 EST1072602 Normalized pine embryo li... 72 7e-011
gb|DR117946.1|DR117946 RTMG1_10_E07.b1_A029 Roots minus mag... 68 1e-009
gb|BX255348.1|BX255348 BX255348 Pinus pinaster differenciat... 66 4e-009
gb|BQ655660.1|BQ655660 NXRV097_E06_F NXRV (Nsf Xylem Root w... 66 4e-009
gb|CF672228.1|CF672228 RTCNT1_62_E07.b1_A029 Root control P... 66 4e-009
gb|CV032125.1|CV032125 RTNACL1_6_C05.b1_A029 Roots plus add... 66 4e-009
gb|DR047690.1|DR047690 RTBOR1_2_G01.g1_A029 Roots plus adde... 66 4e-009
gb|DR071747.1|DR071747 RTDK1_21_G12.g1_A029 Roots, dark Pin... 66 4e-009
gb|DR687853.1|DR687853 EST1077936 Normalized pine embryo li... 66 4e-009
gb|DR689565.1|DR689565 EST1079651 Normalized pine embryo li... 66 4e-009
gb|DT635726.1|DT635726 EST1150657 Normalized pine embryo li... 66 4e-009
emb|X80845.2|PCCDCPNC P.contorta cdc2Pnc RNA 66 4e-009
gb|DR118982.1|DR118982 RTMG1_20_A01.g1_A029 Roots minus mag... 64 2e-008
gb|DT634433.1|DT634433 EST1149364 Normalized pine embryo li... 60 3e-007
gb|BE241370.1|BE241370 NXNV_187_B04_F Nsf Xylem Normal wood... 52 6e-005
gb|BG275954.1|BG275954 NXSI_149_H10_F NXSI (Nsf Xylem Side ... 52 6e-005
gb|BQ702771.1|BQ702771 NXSI_132_D11_F NXSI (Nsf Xylem Side ... 52 6e-005
gb|CF393169.1|CF393169 RTDR3_17_B04.g1_A022 Loblolly pine r... 52 6e-005
gb|CF672308.1|CF672308 RTCNT1_62_E07.g1_A029 Root control P... 52 6e-005
gb|CO197165.1|CO197165 GEO1_4_G09.b1_A029 Root gravitropism... 52 6e-005
gb|DR112154.1|DR112154 RTS1_26_F03.b1_A029 Roots minus sulf... 52 6e-005
gb|DR118975.1|DR118975 RTMG1_20_H06.b1_A029 Roots minus mag... 52 6e-005
gb|DR691370.1|DR691370 EST1081457 Normalized pine embryo li... 52 6e-005
gb|DR072155.1|DR072155 RTDK1_24_H12.b1_A029 Roots, dark Pin... 50 2e-004
gb|DR686314.1|DR686314 EST1076392 Normalized pine embryo li... 50 2e-004
gb|DR047620.1|DR047620 RTBOR1_2_G01.b1_A029 Roots plus adde... 48 0.001
gb|DR111806.1|DR111806 RTS1_20_H03.b1_A029 Roots minus sulf... 48 0.001
gb|CD016783.1|CD016783 NXCI_045_C08_F NXCI (Nsf Xylem Compr... 46 0.004
gb|BX252180.1|BX252180 BX252180 Pinus pinaster differenciat... 42 0.059
gb|CO362269.1|CO362269 RTK1_2_B06.g1_A029 Roots minus potas... 42 0.059
gb|DN613102.1|DN613102 EST966152 Subtracted pine embryo lib... 42 0.059
gb|DR017685.1|DR017685 STRS1_17_G08.g1_A034 Shoot tip pitch... 42 0.059
gb|DR683010.1|DR683010 EST1073085 Normalized pine embryo li... 42 0.059
gb|DR684606.1|DR684606 EST1074683 Normalized pine embryo li... 42 0.059
gb|DR687260.1|DR687260 EST1077340 Normalized pine embryo li... 42 0.059
gb|DR687486.1|DR687486 EST1077568 Normalized pine embryo li... 42 0.059
gb|DR688011.1|DR688011 EST1078094 Normalized pine embryo li... 42 0.059
gb|DT634167.1|DT634167 EST1149098 Normalized pine embryo li... 42 0.059
gb|BM367806.1|BM367806 NXLV_058_A10_F NXLV (Nsf Xylem Late ... 40 0.23
gb|CF398096.1|CF398096 RTDS3_21_C04.b1_A022 Drought-stresse... 40 0.23
gb|CF477955.1|CF477955 RTWW3_17_A03.b1_A022 Well-watered lo... 40 0.23
gb|BX677716.1|BX677716 BX677716 RN Pinus pinaster cDNA clon... 40 0.23
gb|CR393274.1|CR393274 CR393274 RN Pinus pinaster cDNA clon... 40 0.23
gb|CO196760.1|CO196760 GEO1_1_H10.b1_A029 Root gravitropism... 40 0.23
gb|CV032198.1|CV032198 RTNACL1_6_C05.g2_A029 Roots plus add... 40 0.23
>gb|CO361030.1|CO361030 NDL2_2_E03.b1_A029 Needles control 2 Pinus taeda cDNA clone
NDL2_2_E03_A029 3', mRNA sequence
Length = 744
Score = 73.8 bits (37), Expect = 2e-011
Identities = 184/233 (78%)
Strand = Plus / Plus
Query: 659 aatgcactgaagcttgcagactttggtttagccagggcatttggaattcctgtccgtaca 718
|||||| |||| ||||| |||||||| | |||||||||||||||||||| || | ||
Sbjct: 35 aatgcattgaaacttgctgactttggacttgccagggcatttggaattccagtgaggacc 94
Query: 719 tttactcatgaggtagtgacattatggtacagagctccagaaattctgcttggagcgagg 778
|||||||||||||| || ||||| ||||| | || || || || | ||||| | ||
Sbjct: 95 tttactcatgaggtggttacattgtggtatcgtgcacccgagatcttacttggttcccgg 154
Query: 779 cagtattccacaccagttgatgtgtggtctgtgggctgtatctttgcggaaatggtgaac 838
|| ||||| || || |||||||| |||||||| || ||||||||||| |||||||| ||
Sbjct: 155 cattattcgactcctgttgatgtttggtctgttggatgtatctttgctgaaatggtcaat 214
Query: 839 caaaagccactattccctggcgattctgagatcgacgaactttttaagatatt 891
|| ||||| ||||| || ||||| ||||| || || || |||||||||||
Sbjct: 215 cagcgaccacttttcccaggagattcagagattgatgagctctttaagatatt 267
>gb|BF220886.1|BF220886 NXCI_155_C01_F NXCI (Nsf Xylem Compression wood Inclined) Pinus
taeda cDNA clone NXCI_155_C01 5' similar to Arabidopsis
thaliana sequence At3g48750 protein kinase (cdc2) see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 487
Score = 71.9 bits (36), Expect = 7e-011
Identities = 141/176 (80%)
Strand = Plus / Plus
Query: 659 aatgcactgaagcttgcagactttggtttagccagggcatttggaattcctgtccgtaca 718
|||||| |||| ||||| |||||||| | |||||||||||||||||||| || | ||
Sbjct: 37 aatgcattgaaacttgctgactttggacttgccagggcatttggaattccagtgaggacc 96
Query: 719 tttactcatgaggtagtgacattatggtacagagctccagaaattctgcttggagcgagg 778
|||||||||||||| || ||||| ||||| | || || || || | ||||| | ||
Sbjct: 97 tttactcatgaggtggttacattgtggtatcgtgcacccgagatcttacttggttcccgg 156
Query: 779 cagtattccacaccagttgatgtgtggtctgtgggctgtatctttgcggaaatggt 834
|| ||||| || || |||||||| |||||||| || ||||||||||| ||||||||
Sbjct: 157 cattattcgactcctgttgatgtttggtctgttggatgtatctttgctgaaatggt 212
>gb|BQ634753.1|BQ634753 NXRV072_H01_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV072_H01 5' similar to Arabidopsis thaliana
sequence At3g48750 protein kinase (cdc2) see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 625
Score = 71.9 bits (36), Expect = 7e-011
Identities = 141/176 (80%)
Strand = Plus / Plus
Query: 659 aatgcactgaagcttgcagactttggtttagccagggcatttggaattcctgtccgtaca 718
|||||| |||| ||||| |||||||| | |||||||||||||||||||| || | ||
Sbjct: 156 aatgcattgaaacttgctgactttggacttgccagggcatttggaattccagtgaggacc 215
Query: 719 tttactcatgaggtagtgacattatggtacagagctccagaaattctgcttggagcgagg 778
|||||||||||||| || ||||| ||||| | || || || || | ||||| | ||
Sbjct: 216 tttactcatgaggtggttacattgtggtatcgtgcacccgagatcttacttggttcccgg 275
Query: 779 cagtattccacaccagttgatgtgtggtctgtgggctgtatctttgcggaaatggt 834
|| ||||| || || |||||||| |||||||| || ||||||||||| ||||||||
Sbjct: 276 cattattcgactcctgttgatgtttggtctgttggatgtatctttgctgaaatggt 331
>gb|BQ699858.1|BQ699858 NXRV122_E06_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV122_E06 5' similar to Arabidopsis thaliana
sequence At3g48750 protein kinase (cdc2) see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 608
Score = 71.9 bits (36), Expect = 7e-011
Identities = 141/176 (80%)
Strand = Plus / Plus
Query: 659 aatgcactgaagcttgcagactttggtttagccagggcatttggaattcctgtccgtaca 718
|||||| |||| ||||| |||||||| | |||||||||||||||||||| || | ||
Sbjct: 155 aatgcattgaaacttgctgactttggacttgccagggcatttggaattccagtgaggacc 214
Query: 719 tttactcatgaggtagtgacattatggtacagagctccagaaattctgcttggagcgagg 778
|||||||||||||| || ||||| ||||| | || || || || | ||||| | ||
Sbjct: 215 tttactcatgaggtggttacattgtggtatcgtgcacccgagatcttacttggttcccgg 274
Query: 779 cagtattccacaccagttgatgtgtggtctgtgggctgtatctttgcggaaatggt 834
|| ||||| || || |||||||| |||||||| || ||||||||||| ||||||||
Sbjct: 275 cattattcgactcctgttgatgtttggtctgttggatgtatctttgctgaaatggt 330
>gb|CF397177.1|CF397177 RTDS3_2_A03.b2_A022 Drought-stressed loblolly pine roots DS3 Pinus
taeda cDNA clone RTDS3_2_A03_A022 3', mRNA sequence
Length = 630
Score = 71.9 bits (36), Expect = 7e-011
Identities = 141/176 (80%)
Strand = Plus / Minus
Query: 659 aatgcactgaagcttgcagactttggtttagccagggcatttggaattcctgtccgtaca 718
|||||| |||| ||||| |||||||| | |||||||||||||||||||| || | ||
Sbjct: 200 aatgcattgaaacttgctgactttggacttgccagggcatttggaattccagtgaggacc 141
Query: 719 tttactcatgaggtagtgacattatggtacagagctccagaaattctgcttggagcgagg 778
|||||||||||||| || ||||| ||||| | || || || || | ||||| | ||
Sbjct: 140 tttactcatgaggtggttacattgtggtatcgtgcacccgagatcttacttggttcccgg 81
Query: 779 cagtattccacaccagttgatgtgtggtctgtgggctgtatctttgcggaaatggt 834
|| ||||| || || |||||||| |||||||| || ||||||||||| ||||||||
Sbjct: 80 cattattcgactcctgttgatgtttggtctgttggatgtatctttgctgaaatggt 25
>gb|CO163989.1|CO163989 FLD1_45_C09.b1_A029 Root flooded Pinus taeda cDNA clone
FLD1_45_C09_A029 3', mRNA sequence
Length = 878
Score = 71.9 bits (36), Expect = 7e-011
Identities = 141/176 (80%)
Strand = Plus / Plus
Query: 659 aatgcactgaagcttgcagactttggtttagccagggcatttggaattcctgtccgtaca 718
|||||| |||| ||||| |||||||| | |||||||||||||||||||| || | ||
Sbjct: 58 aatgcattgaaacttgctgactttggacttgccagggcatttggaattccagtgaggacc 117
Query: 719 tttactcatgaggtagtgacattatggtacagagctccagaaattctgcttggagcgagg 778
|||||||||||||| || ||||| ||||| | || || || || | ||||| | ||
Sbjct: 118 tttactcatgaggtggttacattgtggtatcgtgcacccgagatcttacttggttcccgg 177
Query: 779 cagtattccacaccagttgatgtgtggtctgtgggctgtatctttgcggaaatggt 834
|| ||||| || || |||||||| |||||||| || ||||||||||| ||||||||
Sbjct: 178 cattattcgactcctgttgatgtttggtctgttggatgtatctttgctgaaatggt 233
>gb|CO164065.1|CO164065 FLD1_45_C09.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_45_C09_A029 5', mRNA sequence
Length = 896
Score = 71.9 bits (36), Expect = 7e-011
Identities = 141/176 (80%)
Strand = Plus / Plus
Query: 659 aatgcactgaagcttgcagactttggtttagccagggcatttggaattcctgtccgtaca 718
|||||| |||| ||||| |||||||| | |||||||||||||||||||| || | ||
Sbjct: 216 aatgcattgaaacttgctgactttggacttgccagggcatttggaattccagtgaggacc 275
Query: 719 tttactcatgaggtagtgacattatggtacagagctccagaaattctgcttggagcgagg 778
|||||||||||||| || ||||| ||||| | || || || || | ||||| | ||
Sbjct: 276 tttactcatgaggtggttacattgtggtatcgtgcacccgagatcttacttggttcccgg 335
Query: 779 cagtattccacaccagttgatgtgtggtctgtgggctgtatctttgcggaaatggt 834
|| ||||| || || |||||||| |||||||| || ||||||||||| ||||||||
Sbjct: 336 cattattcgactcctgttgatgtttggtctgttggatgtatctttgctgaaatggt 391
>gb|CO196841.1|CO196841 GEO1_1_H10.g1_A029 Root gravitropism April 2003 test Pinus taeda
cDNA clone GEO1_1_H10_A029 5', mRNA sequence
Length = 708
Score = 71.9 bits (36), Expect = 7e-011
Identities = 141/176 (80%)
Strand = Plus / Plus
Query: 659 aatgcactgaagcttgcagactttggtttagccagggcatttggaattcctgtccgtaca 718
|||||| |||| ||||| |||||||| | |||||||||||||||||||| || | ||
Sbjct: 263 aatgcattgaaacttgctgactttggacttgccagggcatttggaattccagtgaggacc 322
Query: 719 tttactcatgaggtagtgacattatggtacagagctccagaaattctgcttggagcgagg 778
|||||||||||||| || ||||| ||||| | || || || || | ||||| | ||
Sbjct: 323 tttactcatgaggtggttacattgtggtatcgtgcacccgagatcttacttggttcccgg 382
Query: 779 cagtattccacaccagttgatgtgtggtctgtgggctgtatctttgcggaaatggt 834
|| ||||| || || |||||||| |||||||| || ||||||||||| ||||||||
Sbjct: 383 cattattcgactcctgttgatgtttggtctgttggatgtatctttgctgaaatggt 438
>gb|CO197238.1|CO197238 GEO1_4_G09.g1_A029 Root gravitropism April 2003 test Pinus taeda
cDNA clone GEO1_4_G09_A029 5', mRNA sequence
Length = 701
Score = 71.9 bits (36), Expect = 7e-011
Identities = 141/176 (80%)
Strand = Plus / Plus
Query: 659 aatgcactgaagcttgcagactttggtttagccagggcatttggaattcctgtccgtaca 718
|||||| |||| ||||| |||||||| | |||||||||||||||||||| || | ||
Sbjct: 263 aatgcattgaaacttgctgactttggacttgccagggcatttggaattccagtgaggacc 322
Query: 719 tttactcatgaggtagtgacattatggtacagagctccagaaattctgcttggagcgagg 778
|||||||||||||| || ||||| ||||| | || || || || | ||||| | ||
Sbjct: 323 tttactcatgaggtggttacattgtggtatcgtgcacccgagatcttacttggttcccgg 382
Query: 779 cagtattccacaccagttgatgtgtggtctgtgggctgtatctttgcggaaatggt 834
|| ||||| || || |||||||| |||||||| || ||||||||||| ||||||||
Sbjct: 383 cattattcgactcctgttgatgtttggtctgttggatgtatctttgctgaaatggt 438
>gb|CO361091.1|CO361091 NDL2_2_E03.g1_A029 Needles control 2 Pinus taeda cDNA clone
NDL2_2_E03_A029 5', mRNA sequence
Length = 848
Score = 71.9 bits (36), Expect = 7e-011
Identities = 141/176 (80%)
Strand = Plus / Plus
Query: 659 aatgcactgaagcttgcagactttggtttagccagggcatttggaattcctgtccgtaca 718
|||||| |||| ||||| |||||||| | |||||||||||||||||||| || | ||
Sbjct: 284 aatgcattgaaacttgctgactttggacttgccagggcatttggaattccagtgaggacc 343
Query: 719 tttactcatgaggtagtgacattatggtacagagctccagaaattctgcttggagcgagg 778
|||||||||||||| || ||||| ||||| | || || || || | ||||| | ||
Sbjct: 344 tttactcatgaggtggttacattgtggtatcgtgcacccgagatcttacttggttcccgg 403
Query: 779 cagtattccacaccagttgatgtgtggtctgtgggctgtatctttgcggaaatggt 834
|| ||||| || || |||||||| |||||||| || ||||||||||| ||||||||
Sbjct: 404 cattattcgactcctgttgatgtttggtctgttggatgtatctttgctgaaatggt 459
>gb|CO368804.1|CO368804 RTK1_43_A05.b1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_43_A05_A029 3', mRNA sequence
Length = 846
Score = 71.9 bits (36), Expect = 7e-011
Identities = 141/176 (80%)
Strand = Plus / Minus
Query: 659 aatgcactgaagcttgcagactttggtttagccagggcatttggaattcctgtccgtaca 718
|||||| |||| ||||| |||||||| | |||||||||||||||||||| || | ||
Sbjct: 255 aatgcattgaaacttgctgactttggacttgccagggcatttggaattccagtgaggacc 196
Query: 719 tttactcatgaggtagtgacattatggtacagagctccagaaattctgcttggagcgagg 778
|||||||||||||| || ||||| ||||| | || || || || | ||||| | ||
Sbjct: 195 tttactcatgaggtggttacattgtggtatcgtgcacccgagatcttacttggttcccgg 136
Query: 779 cagtattccacaccagttgatgtgtggtctgtgggctgtatctttgcggaaatggt 834
|| ||||| || || |||||||| |||||||| || ||||||||||| ||||||||
Sbjct: 135 cattattcgactcctgttgatgtttggtctgttggatgtatctttgctgaaatggt 80
>gb|CO369018.1|CO369018 RTK1_44_A04.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_44_A04_A029 5', mRNA sequence
Length = 778
Score = 71.9 bits (36), Expect = 7e-011
Identities = 141/176 (80%)
Strand = Plus / Plus
Query: 659 aatgcactgaagcttgcagactttggtttagccagggcatttggaattcctgtccgtaca 718
|||||| |||| ||||| |||||||| | |||||||||||||||||||| || | ||
Sbjct: 438 aatgcattgaaacttgctgactttggacttgccagggcatttggaattccagtgaggacc 497
Query: 719 tttactcatgaggtagtgacattatggtacagagctccagaaattctgcttggagcgagg 778
|||||||||||||| || ||||| ||||| | || || || || | ||||| | ||
Sbjct: 498 tttactcatgaggtggttacattgtggtatcgtgcacccgagatcttacttggttcccgg 557
Query: 779 cagtattccacaccagttgatgtgtggtctgtgggctgtatctttgcggaaatggt 834
|| ||||| || || |||||||| |||||||| || ||||||||||| ||||||||
Sbjct: 558 cattattcgactcctgttgatgtttggtctgttggatgtatctttgctgaaatggt 613
>gb|CX715980.1|CX715980 RTPQ1_39_D09.b1_A032 Roots treated with paraquat Pinus taeda cDNA
clone RTPQ1_39_D09_A032 3', mRNA sequence
Length = 782
Score = 71.9 bits (36), Expect = 7e-011
Identities = 141/176 (80%)
Strand = Plus / Minus
Query: 659 aatgcactgaagcttgcagactttggtttagccagggcatttggaattcctgtccgtaca 718
|||||| |||| ||||| |||||||| | |||||||||||||||||||| || | ||
Sbjct: 196 aatgcattgaaacttgctgactttggacttgccagggcatttggaattccagtgaggacc 137
Query: 719 tttactcatgaggtagtgacattatggtacagagctccagaaattctgcttggagcgagg 778
|||||||||||||| || ||||| ||||| | || || || || | ||||| | ||
Sbjct: 136 tttactcatgaggtggttacattgtggtatcgtgcacccgagatcttacttggttcccgg 77
Query: 779 cagtattccacaccagttgatgtgtggtctgtgggctgtatctttgcggaaatggt 834
|| ||||| || || |||||||| |||||||| || ||||||||||| ||||||||
Sbjct: 76 cattattcgactcctgttgatgtttggtctgttggatgtatctttgctgaaatggt 21
>gb|DR050664.1|DR050664 RTBOR1_25_A01.b1_A029 Roots plus added boron Pinus taeda cDNA clone
RTBOR1_25_A01_A029 3', mRNA sequence
Length = 810
Score = 71.9 bits (36), Expect = 7e-011
Identities = 141/176 (80%)
Strand = Plus / Plus
Query: 659 aatgcactgaagcttgcagactttggtttagccagggcatttggaattcctgtccgtaca 718
|||||| |||| ||||| |||||||| | |||||||||||||||||||| || | ||
Sbjct: 60 aatgcattgaaacttgctgactttggacttgccagggcatttggaattccagtgaggacc 119
Query: 719 tttactcatgaggtagtgacattatggtacagagctccagaaattctgcttggagcgagg 778
|||||||||||||| || ||||| ||||| | || || || || | ||||| | ||
Sbjct: 120 tttactcatgaggtggttacattgtggtatcgtgcacccgagatcttacttggttcccgg 179
Query: 779 cagtattccacaccagttgatgtgtggtctgtgggctgtatctttgcggaaatggt 834
|| ||||| || || |||||||| |||||||| || ||||||||||| ||||||||
Sbjct: 180 cattattcgactcctgttgatgtttggtctgttggatgtatctttgctgaaatggt 235
>gb|DR072230.1|DR072230 RTDK1_24_H12.g1_A029 Roots, dark Pinus taeda cDNA clone
RTDK1_24_H12_A029 5', mRNA sequence
Length = 648
Score = 71.9 bits (36), Expect = 7e-011
Identities = 141/176 (80%)
Strand = Plus / Plus
Query: 659 aatgcactgaagcttgcagactttggtttagccagggcatttggaattcctgtccgtaca 718
|||||| |||| ||||| |||||||| | |||||||||||||||||||| || | ||
Sbjct: 443 aatgcattgaaacttgctgactttggacttgccagggcatttggaattccagtgaggacc 502
Query: 719 tttactcatgaggtagtgacattatggtacagagctccagaaattctgcttggagcgagg 778
|||||||||||||| || ||||| ||||| | || || || || | ||||| | ||
Sbjct: 503 tttactcatgaggtggttacattgtggtatcgtgcacccgagatcttacttggttcccgg 562
Query: 779 cagtattccacaccagttgatgtgtggtctgtgggctgtatctttgcggaaatggt 834
|| ||||| || || |||||||| |||||||| || ||||||||||| ||||||||
Sbjct: 563 cattattcgactcctgttgatgtttggtctgttggatgtatctttgctgaaatggt 618
>gb|DR089145.1|DR089145 RTAL1_6_G03.g1_A029 Roots plus added aluminum Pinus taeda cDNA
clone RTAL1_6_G03_A029 5', mRNA sequence
Length = 801
Score = 71.9 bits (36), Expect = 7e-011
Identities = 141/176 (80%)
Strand = Plus / Plus
Query: 659 aatgcactgaagcttgcagactttggtttagccagggcatttggaattcctgtccgtaca 718
|||||| |||| ||||| |||||||| | |||||||||||||||||||| || | ||
Sbjct: 217 aatgcattgaaacttgctgactttggacttgccagggcatttggaattccagtgaggacc 276
Query: 719 tttactcatgaggtagtgacattatggtacagagctccagaaattctgcttggagcgagg 778
|||||||||||||| || ||||| ||||| | || || || || | ||||| | ||
Sbjct: 277 tttactcatgaggtggttacattgtggtatcgtgcacccgagatcttacttggttcccgg 336
Query: 779 cagtattccacaccagttgatgtgtggtctgtgggctgtatctttgcggaaatggt 834
|| ||||| || || |||||||| |||||||| || ||||||||||| ||||||||
Sbjct: 337 cattattcgactcctgttgatgtttggtctgttggatgtatctttgctgaaatggt 392
>gb|DR089371.1|DR089371 RTAL1_8_F06.b1_A029 Roots plus added aluminum Pinus taeda cDNA
clone RTAL1_8_F06_A029 3', mRNA sequence
Length = 780
Score = 71.9 bits (36), Expect = 7e-011
Identities = 141/176 (80%)
Strand = Plus / Plus
Query: 659 aatgcactgaagcttgcagactttggtttagccagggcatttggaattcctgtccgtaca 718
|||||| |||| ||||| |||||||| | |||||||||||||||||||| || | ||
Sbjct: 58 aatgcattgaaacttgctgactttggacttgccagggcatttggaattccagtgaggacc 117
Query: 719 tttactcatgaggtagtgacattatggtacagagctccagaaattctgcttggagcgagg 778
|||||||||||||| || ||||| ||||| | || || || || | ||||| | ||
Sbjct: 118 tttactcatgaggtggttacattgtggtatcgtgcacccgagatcttacttggttcccgg 177
Query: 779 cagtattccacaccagttgatgtgtggtctgtgggctgtatctttgcggaaatggt 834
|| ||||| || || |||||||| |||||||| || ||||||||||| ||||||||
Sbjct: 178 cattattcgactcctgttgatgtttggtctgttggatgtatctttgctgaaatggt 233
Score = 40.1 bits (20), Expect = 0.23
Identities = 38/44 (86%)
Strand = Plus / Plus
Query: 923 tggccaggagtcagttgtttgcctgacttcaagacagctttccc 966
||||||||||||| | | |||||||||||||| |||| |||||
Sbjct: 346 tggccaggagtcacctctctgcctgacttcaagtcagccttccc 389
>gb|DR089449.1|DR089449 RTAL1_8_F06.g1_A029 Roots plus added aluminum Pinus taeda cDNA
clone RTAL1_8_F06_A029 5', mRNA sequence
Length = 835
Score = 71.9 bits (36), Expect = 7e-011
Identities = 141/176 (80%)
Strand = Plus / Plus
Query: 659 aatgcactgaagcttgcagactttggtttagccagggcatttggaattcctgtccgtaca 718
|||||| |||| ||||| |||||||| | |||||||||||||||||||| || | ||
Sbjct: 517 aatgcattgaaacttgctgactttggacttgccagggcatttggaattccagtgaggacc 576
Query: 719 tttactcatgaggtagtgacattatggtacagagctccagaaattctgcttggagcgagg 778
|||||||||||||| || ||||| ||||| | || || || || | ||||| | ||
Sbjct: 577 tttactcatgaggtggttacattgtggtatcgtgcacccgagatcttacttggttcccgg 636
Query: 779 cagtattccacaccagttgatgtgtggtctgtgggctgtatctttgcggaaatggt 834
|| ||||| || || |||||||| |||||||| || ||||||||||| ||||||||
Sbjct: 637 cattattcgactcctgttgatgtttggtctgttggatgtatctttgctgaaatggt 692
>gb|DR111877.1|DR111877 RTS1_20_H03.g1_A029 Roots minus sulfur Pinus taeda cDNA clone
RTS1_20_H03_A029 5', mRNA sequence
Length = 737
Score = 71.9 bits (36), Expect = 7e-011
Identities = 141/176 (80%)
Strand = Plus / Plus
Query: 659 aatgcactgaagcttgcagactttggtttagccagggcatttggaattcctgtccgtaca 718
|||||| |||| ||||| |||||||| | |||||||||||||||||||| || | ||
Sbjct: 402 aatgcattgaaacttgctgactttggacttgccagggcatttggaattccagtgaggacc 461
Query: 719 tttactcatgaggtagtgacattatggtacagagctccagaaattctgcttggagcgagg 778
|||||||||||||| || ||||| ||||| | || || || || | ||||| | ||
Sbjct: 462 tttactcatgaggtggttacattgtggtatcgtgcacccgagatcttacttggttcccgg 521
Query: 779 cagtattccacaccagttgatgtgtggtctgtgggctgtatctttgcggaaatggt 834
|| ||||| || || |||||||| |||||||| || ||||||||||| ||||||||
Sbjct: 522 cattattcgactcctgttgatgtttggtctgttggatgtatctttgctgaaatggt 577
>gb|DR112231.1|DR112231 RTS1_26_F03.g1_A029 Roots minus sulfur Pinus taeda cDNA clone
RTS1_26_F03_A029 5', mRNA sequence
Length = 613
Score = 71.9 bits (36), Expect = 7e-011
Identities = 141/176 (80%)
Strand = Plus / Minus
Query: 659 aatgcactgaagcttgcagactttggtttagccagggcatttggaattcctgtccgtaca 718
|||||| |||| ||||| |||||||| | |||||||||||||||||||| || | ||
Sbjct: 589 aatgcattgaaacttgctgactttggacttgccagggcatttggaattccagtgaggacc 530
Query: 719 tttactcatgaggtagtgacattatggtacagagctccagaaattctgcttggagcgagg 778
|||||||||||||| || ||||| ||||| | || || || || | ||||| | ||
Sbjct: 529 tttactcatgaggtggttacattgtggtatcgtgcacccgagatcttacttggttcccgg 470
Query: 779 cagtattccacaccagttgatgtgtggtctgtgggctgtatctttgcggaaatggt 834
|| ||||| || || |||||||| |||||||| || ||||||||||| ||||||||
Sbjct: 469 cattattcgactcctgttgatgtttggtctgttggatgtatctttgctgaaatggt 414
>gb|DR118027.1|DR118027 RTMG1_10_E07.g1_A029 Roots minus magnesium Pinus taeda cDNA clone
RTMG1_10_E07_A029 5', mRNA sequence
Length = 585
Score = 71.9 bits (36), Expect = 7e-011
Identities = 141/176 (80%)
Strand = Plus / Plus
Query: 659 aatgcactgaagcttgcagactttggtttagccagggcatttggaattcctgtccgtaca 718
|||||| |||| ||||| |||||||| | |||||||||||||||||||| || | ||
Sbjct: 339 aatgcattgaaacttgctgactttggacttgccagggcatttggaattccagtgaggacc 398
Query: 719 tttactcatgaggtagtgacattatggtacagagctccagaaattctgcttggagcgagg 778
|||||||||||||| || ||||| ||||| | || || || || | ||||| | ||
Sbjct: 399 tttactcatgaggtggttacattgtggtatcgtgcacccgagatcttacttggttcccgg 458
Query: 779 cagtattccacaccagttgatgtgtggtctgtgggctgtatctttgcggaaatggt 834
|| ||||| || || |||||||| |||||||| || ||||||||||| ||||||||
Sbjct: 459 cattattcgactcctgttgatgtttggtctgttggatgtatctttgctgaaatggt 514
>gb|DR119060.1|DR119060 RTMG1_20_H06.g1_A029 Roots minus magnesium Pinus taeda cDNA clone
RTMG1_20_H06_A029 5', mRNA sequence
Length = 449
Score = 71.9 bits (36), Expect = 7e-011
Identities = 141/176 (80%)
Strand = Plus / Plus
Query: 659 aatgcactgaagcttgcagactttggtttagccagggcatttggaattcctgtccgtaca 718
|||||| |||| ||||| |||||||| | |||||||||||||||||||| || | ||
Sbjct: 250 aatgcattgaaacttgctgactttggacttgccagggcatttggaattccagtgaggacc 309
Query: 719 tttactcatgaggtagtgacattatggtacagagctccagaaattctgcttggagcgagg 778
|||||||||||||| || ||||| ||||| | || || || || | ||||| | ||
Sbjct: 310 tttactcatgaggtggttacattgtggtatcgtgcacccgagatcttacttggttcccgg 369
Query: 779 cagtattccacaccagttgatgtgtggtctgtgggctgtatctttgcggaaatggt 834
|| ||||| || || |||||||| |||||||| || ||||||||||| ||||||||
Sbjct: 370 cattattcgactcctgttgatgtttggtctgttggatgtatctttgctgaaatggt 425
>gb|DR682526.1|DR682526 EST1072601 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAAA47, mRNA sequence
Length = 809
Score = 71.9 bits (36), Expect = 7e-011
Identities = 141/176 (80%)
Strand = Plus / Minus
Query: 659 aatgcactgaagcttgcagactttggtttagccagggcatttggaattcctgtccgtaca 718
|||||| |||| ||||| |||||||| | |||||||||||||||||||| || | ||
Sbjct: 729 aatgcattgaaacttgctgactttggacttgccagggcatttggaattccagtgaggacc 670
Query: 719 tttactcatgaggtagtgacattatggtacagagctccagaaattctgcttggagcgagg 778
|||||||||||||| || ||||| ||||| | || || || || | ||||| | ||
Sbjct: 669 tttactcatgaggtggttacattgtggtatcgtgcacccgagatcttacttggttcccgg 610
Query: 779 cagtattccacaccagttgatgtgtggtctgtgggctgtatctttgcggaaatggt 834
|| ||||| || || |||||||| |||||||| || ||||||||||| ||||||||
Sbjct: 609 cattattcgactcctgttgatgtttggtctgttggatgtatctttgctgaaatggt 554
>gb|DR682527.1|DR682527 EST1072602 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAAA47 3' end, mRNA sequence
Length = 651
Score = 71.9 bits (36), Expect = 7e-011
Identities = 141/176 (80%)
Strand = Plus / Plus
Query: 659 aatgcactgaagcttgcagactttggtttagccagggcatttggaattcctgtccgtaca 718
|||||| |||| ||||| |||||||| | |||||||||||||||||||| || | ||
Sbjct: 161 aatgcattgaaacttgctgactttggacttgccagggcatttggaattccagtgaggacc 220
Query: 719 tttactcatgaggtagtgacattatggtacagagctccagaaattctgcttggagcgagg 778
|||||||||||||| || ||||| ||||| | || || || || | ||||| | ||
Sbjct: 221 tttactcatgaggtggttacattgtggtatcgtgcacccgagatcttacttggttcccgg 280
Query: 779 cagtattccacaccagttgatgtgtggtctgtgggctgtatctttgcggaaatggt 834
|| ||||| || || |||||||| |||||||| || ||||||||||| ||||||||
Sbjct: 281 cattattcgactcctgttgatgtttggtctgttggatgtatctttgctgaaatggt 336
>gb|DR117946.1|DR117946 RTMG1_10_E07.b1_A029 Roots minus magnesium Pinus taeda cDNA clone
RTMG1_10_E07_A029 3', mRNA sequence
Length = 756
Score = 67.9 bits (34), Expect = 1e-009
Identities = 139/174 (79%)
Strand = Plus / Plus
Query: 661 tgcactgaagcttgcagactttggtttagccagggcatttggaattcctgtccgtacatt 720
|||| |||| ||||| |||||||| | |||||||||||||||||||| || | || ||
Sbjct: 1 tgcattgaaacttgctgactttggacttgccagggcatttggaattccagtgaggacctt 60
Query: 721 tactcatgaggtagtgacattatggtacagagctccagaaattctgcttggagcgaggca 780
|||||||||||| || ||||| ||||| | || || || || | ||||| | ||||
Sbjct: 61 tactcatgaggtggttacattgtggtatcgtgcacccgagatcttacttggttcccggca 120
Query: 781 gtattccacaccagttgatgtgtggtctgtgggctgtatctttgcggaaatggt 834
||||| || || |||||||| |||||||| || ||||||||||| ||||||||
Sbjct: 121 ttattcgactcctgttgatgtttggtctgttggatgtatctttgctgaaatggt 174
>gb|BX255348.1|BX255348 BX255348 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP004G03 similar to CELL DIVISION CONTROL
PROTEIN, mRNA sequence
Length = 632
Score = 65.9 bits (33), Expect = 4e-009
Identities = 135/169 (79%)
Strand = Plus / Plus
Query: 666 tgaagcttgcagactttggtttagccagggcatttggaattcctgtccgtacatttactc 725
|||| ||||| |||||||| | |||||||||||||||||||| || | || |||||||
Sbjct: 112 tgaaacttgctgactttggacttgccagggcatttggaattccagtgaggacctttactc 171
Query: 726 atgaggtagtgacattatggtacagagctccagaaattctgcttggagcgaggcagtatt 785
||||||| || ||||| ||||| | || ||||| || | ||||| | | || ||||
Sbjct: 172 atgaggtggttacattgtggtatcgtgcaccagagatcttacttggttcccgacattatt 231
Query: 786 ccacaccagttgatgtgtggtctgtgggctgtatctttgcggaaatggt 834
| || || |||||||| |||||||| || ||||||||||| ||||||||
Sbjct: 232 cgactcctgttgatgtttggtctgttggatgtatctttgctgaaatggt 280
>gb|BQ655660.1|BQ655660 NXRV097_E06_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV097_E06 5' similar to Arabidopsis thaliana
sequence At3g48750 protein kinase (cdc2) see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 412
Score = 65.9 bits (33), Expect = 4e-009
Identities = 75/89 (84%)
Strand = Plus / Plus
Query: 659 aatgcactgaagcttgcagactttggtttagccagggcatttggaattcctgtccgtaca 718
|||||| |||| ||||| |||||||| | |||||||||||||||||||| || | ||
Sbjct: 155 aatgcattgaaacttgctgactttggacttgccagggcatttggaattccagtgaggacc 214
Query: 719 tttactcatgaggtagtgacattatggta 747
|||||||||||||| || ||||| |||||
Sbjct: 215 tttactcatgaggtggttacattgtggta 243
>gb|CF672228.1|CF672228 RTCNT1_62_E07.b1_A029 Root control Pinus taeda cDNA clone
RTCNT1_62_E07_A029 3', mRNA sequence
Length = 744
Score = 65.9 bits (33), Expect = 4e-009
Identities = 75/89 (84%)
Strand = Plus / Minus
Query: 659 aatgcactgaagcttgcagactttggtttagccagggcatttggaattcctgtccgtaca 718
|||||| |||| ||||| |||||||| | |||||||||||||||||||| || | ||
Sbjct: 155 aatgcattgaaacttgctgactttggacttgccagggcatttggaattccagtgaggacc 96
Query: 719 tttactcatgaggtagtgacattatggta 747
|||||||||||||| || ||||| |||||
Sbjct: 95 tttactcatgaggtggttacattgtggta 67
>gb|CV032125.1|CV032125 RTNACL1_6_C05.b1_A029 Roots plus added NaCl Pinus taeda cDNA clone
RTNACL1_6_C05_A029 3', mRNA sequence
Length = 740
Score = 65.9 bits (33), Expect = 4e-009
Identities = 75/89 (84%)
Strand = Plus / Minus
Query: 659 aatgcactgaagcttgcagactttggtttagccagggcatttggaattcctgtccgtaca 718
|||||| |||| ||||| |||||||| | |||||||||||||||||||| || | ||
Sbjct: 151 aatgcattgaaacttgctgactttggacttgccagggcatttggaattccagtgaggacc 92
Query: 719 tttactcatgaggtagtgacattatggta 747
|||||||||||||| || ||||| |||||
Sbjct: 91 tttactcatgaggtggttacattgtggta 63
>gb|DR047690.1|DR047690 RTBOR1_2_G01.g1_A029 Roots plus added boron Pinus taeda cDNA clone
RTBOR1_2_G01_A029 5', mRNA sequence
Length = 641
Score = 65.9 bits (33), Expect = 4e-009
Identities = 75/89 (84%)
Strand = Plus / Plus
Query: 659 aatgcactgaagcttgcagactttggtttagccagggcatttggaattcctgtccgtaca 718
|||||| |||| ||||| |||||||| | |||||||||||||||||||| || | ||
Sbjct: 546 aatgcattgaaacttgctgactttggacttgccagggcatttggaattccagtgaggacc 605
Query: 719 tttactcatgaggtagtgacattatggta 747
|||||||||||||| || ||||| |||||
Sbjct: 606 tttactcatgaggtggttacattgtggta 634
>gb|DR071747.1|DR071747 RTDK1_21_G12.g1_A029 Roots, dark Pinus taeda cDNA clone
RTDK1_21_G12_A029 5', mRNA sequence
Length = 726
Score = 65.9 bits (33), Expect = 4e-009
Identities = 75/89 (84%)
Strand = Plus / Plus
Query: 659 aatgcactgaagcttgcagactttggtttagccagggcatttggaattcctgtccgtaca 718
|||||| |||| ||||| |||||||| | |||||||||||||||||||| || | ||
Sbjct: 564 aatgcattgaaacttgctgactttggacttgccagggcatttggaattccagtgaggacc 623
Query: 719 tttactcatgaggtagtgacattatggta 747
|||||||||||||| || ||||| |||||
Sbjct: 624 tttactcatgaggtggttacattgtggta 652
>gb|DR687853.1|DR687853 EST1077936 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWABX35 3' end, mRNA sequence
Length = 717
Score = 65.9 bits (33), Expect = 4e-009
Identities = 75/89 (84%)
Strand = Plus / Plus
Query: 659 aatgcactgaagcttgcagactttggtttagccagggcatttggaattcctgtccgtaca 718
|||||| |||| ||||| |||||||| | |||||||||||||||||||| || | ||
Sbjct: 608 aatgcattgaaacttgctgactttggacttgccagggcatttggaattccagtgaggacc 667
Query: 719 tttactcatgaggtagtgacattatggta 747
|||||||||||||| || ||||| |||||
Sbjct: 668 tttactcatgaggtggttacattgtggta 696
>gb|DR689565.1|DR689565 EST1079651 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWACK31 3' end, mRNA sequence
Length = 747
Score = 65.9 bits (33), Expect = 4e-009
Identities = 75/89 (84%)
Strand = Plus / Plus
Query: 659 aatgcactgaagcttgcagactttggtttagccagggcatttggaattcctgtccgtaca 718
|||||| |||| ||||| |||||||| | |||||||||||||||||||| || | ||
Sbjct: 607 aatgcattgaaacttgctgactttggacttgccagggcatttggaattccagtgaggacc 666
Query: 719 tttactcatgaggtagtgacattatggta 747
|||||||||||||| || ||||| |||||
Sbjct: 667 tttactcatgaggtggttacattgtggta 695
>gb|DT635726.1|DT635726 EST1150657 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMGJ91 3' end, mRNA sequence
Length = 765
Score = 65.9 bits (33), Expect = 4e-009
Identities = 75/89 (84%)
Strand = Plus / Plus
Query: 659 aatgcactgaagcttgcagactttggtttagccagggcatttggaattcctgtccgtaca 718
|||||| |||| ||||| |||||||| | |||||||||||||||||||| || | ||
Sbjct: 615 aatgcattgaaacttgctgactttggacttgccagggcatttggaattccagtgaggacc 674
Query: 719 tttactcatgaggtagtgacattatggta 747
|||||||||||||| || ||||| |||||
Sbjct: 675 tttactcatgaggtggttacattgtggta 703
>emb|X80845.2|PCCDCPNC P.contorta cdc2Pnc RNA
Length = 1291
Score = 65.9 bits (33), Expect = 4e-009
Identities = 135/169 (79%)
Strand = Plus / Plus
Query: 666 tgaagcttgcagactttggtttagccagggcatttggaattcctgtccgtacatttactc 725
|||| ||||| |||||||| | |||||||||||||||||||| || | || |||||||
Sbjct: 519 tgaaacttgccgactttggacttgccagggcatttggaattccagtgaggacctttactc 578
Query: 726 atgaggtagtgacattatggtacagagctccagaaattctgcttggagcgaggcagtatt 785
||||||| || ||||| ||||| | || || || || | ||||| | |||| ||||
Sbjct: 579 atgaggtggttacattgtggtatcgtgcacccgagatcttacttggttcccggcattatt 638
Query: 786 ccacaccagttgatgtgtggtctgtgggctgtatctttgcggaaatggt 834
| || || |||||||| |||||||| || ||||||||||| ||||||||
Sbjct: 639 cgactcctgttgatgtttggtctgttggatgtatctttgctgaaatggt 687
>gb|DR118982.1|DR118982 RTMG1_20_A01.g1_A029 Roots minus magnesium Pinus taeda cDNA clone
RTMG1_20_A01_A029 5', mRNA sequence
Length = 274
Score = 63.9 bits (32), Expect = 2e-008
Identities = 74/88 (84%)
Strand = Plus / Plus
Query: 659 aatgcactgaagcttgcagactttggtttagccagggcatttggaattcctgtccgtaca 718
|||||| |||| ||||| |||||||| | |||||||||||||||||||| || | ||
Sbjct: 187 aatgcattgaaacttgctgactttggacttgccagggcatttggaattccagtgaggacc 246
Query: 719 tttactcatgaggtagtgacattatggt 746
|||||||||||||| || ||||| ||||
Sbjct: 247 tttactcatgaggtggttacattgtggt 274
>gb|DT634433.1|DT634433 EST1149364 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMG590 3' end, mRNA sequence
Length = 729
Score = 60.0 bits (30), Expect = 3e-007
Identities = 63/74 (85%)
Strand = Plus / Plus
Query: 659 aatgcactgaagcttgcagactttggtttagccagggcatttggaattcctgtccgtaca 718
|||||| |||| ||||| |||||||| | |||||||||||||||||||| || | ||
Sbjct: 616 aatgcattgaaacttgctgactttggacttgccagggcatttggaattccagtgaggacc 675
Query: 719 tttactcatgaggt 732
||||||||||||||
Sbjct: 676 tttactcatgaggt 689
>gb|BE241370.1|BE241370 NXNV_187_B04_F Nsf Xylem Normal wood Vertical Pinus taeda cDNA
clone NXNV_187_B04 5' similar to Arabidopsis thaliana
sequence At3g48750 protein kinase (cdc2) see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 270
Score = 52.0 bits (26), Expect = 6e-005
Identities = 50/58 (86%)
Strand = Plus / Plus
Query: 777 ggcagtattccacaccagttgatgtgtggtctgtgggctgtatctttgcggaaatggt 834
|||| ||||| || || |||||||| |||||||| || ||||||||||| ||||||||
Sbjct: 11 ggcattattcgactcctgttgatgtttggtctgttggatgtatctttgctgaaatggt 68
>gb|BG275954.1|BG275954 NXSI_149_H10_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_149_H10 5' similar to Arabidopsis thaliana
sequence At3g48750 protein kinase (cdc2) see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 548
Score = 52.0 bits (26), Expect = 6e-005
Identities = 50/58 (86%)
Strand = Plus / Plus
Query: 777 ggcagtattccacaccagttgatgtgtggtctgtgggctgtatctttgcggaaatggt 834
|||| ||||| || || |||||||| |||||||| || ||||||||||| ||||||||
Sbjct: 41 ggcattattcgactcctgttgatgtttggtctgttggatgtatctttgctgaaatggt 98
>gb|BQ702771.1|BQ702771 NXSI_132_D11_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_132_D11 5' similar to Arabidopsis thaliana
sequence At3g48750 protein kinase (cdc2) see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 479
Score = 52.0 bits (26), Expect = 6e-005
Identities = 50/58 (86%)
Strand = Plus / Plus
Query: 777 ggcagtattccacaccagttgatgtgtggtctgtgggctgtatctttgcggaaatggt 834
|||| ||||| || || |||||||| |||||||| || ||||||||||| ||||||||
Sbjct: 41 ggcattattcgactcctgttgatgtttggtctgttggatgtatctttgctgaaatggt 98
>gb|CF393169.1|CF393169 RTDR3_17_B04.g1_A022 Loblolly pine roots recovering from drought
DR3 Pinus taeda cDNA clone RTDR3_17_B04_A022 5', mRNA
sequence
Length = 723
Score = 52.0 bits (26), Expect = 6e-005
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 659 aatgcactgaagcttgcagactttggtttagccagggcatttggaattcc 708
|||||| |||| ||||| |||||||| | ||||||||||||||||||||
Sbjct: 655 aatgcattgaaacttgctgactttggacttgccagggcatttggaattcc 704
>gb|CF672308.1|CF672308 RTCNT1_62_E07.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_62_E07_A029 5', mRNA sequence
Length = 623
Score = 52.0 bits (26), Expect = 6e-005
Identities = 50/58 (86%)
Strand = Plus / Minus
Query: 777 ggcagtattccacaccagttgatgtgtggtctgtgggctgtatctttgcggaaatggt 834
|||| ||||| || || |||||||| |||||||| || ||||||||||| ||||||||
Sbjct: 618 ggcattattcgactcctgttgatgtttggtctgttggatgtatctttgctgaaatggt 561
>gb|CO197165.1|CO197165 GEO1_4_G09.b1_A029 Root gravitropism April 2003 test Pinus taeda
cDNA clone GEO1_4_G09_A029 3', mRNA sequence
Length = 643
Score = 52.0 bits (26), Expect = 6e-005
Identities = 50/58 (86%)
Strand = Plus / Plus
Query: 777 ggcagtattccacaccagttgatgtgtggtctgtgggctgtatctttgcggaaatggt 834
|||| ||||| || || |||||||| |||||||| || ||||||||||| ||||||||
Sbjct: 11 ggcattattcgactcctgttgatgtttggtctgttggatgtatctttgctgaaatggt 68
>gb|DR112154.1|DR112154 RTS1_26_F03.b1_A029 Roots minus sulfur Pinus taeda cDNA clone
RTS1_26_F03_A029 3', mRNA sequence
Length = 774
Score = 52.0 bits (26), Expect = 6e-005
Identities = 44/50 (88%)
Strand = Plus / Minus
Query: 659 aatgcactgaagcttgcagactttggtttagccagggcatttggaattcc 708
|||||| |||| ||||| |||||||| | ||||||||||||||||||||
Sbjct: 52 aatgcattgaaacttgctgactttggacttgccagggcatttggaattcc 3
>gb|DR118975.1|DR118975 RTMG1_20_H06.b1_A029 Roots minus magnesium Pinus taeda cDNA clone
RTMG1_20_H06_A029 3', mRNA sequence
Length = 725
Score = 52.0 bits (26), Expect = 6e-005
Identities = 50/58 (86%)
Strand = Plus / Plus
Query: 777 ggcagtattccacaccagttgatgtgtggtctgtgggctgtatctttgcggaaatggt 834
|||| ||||| || || |||||||| |||||||| || ||||||||||| ||||||||
Sbjct: 23 ggcattattcgactcctgttgatgtttggtctgttggatgtatctttgctgaaatggt 80
>gb|DR691370.1|DR691370 EST1081457 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAD756 3' end, mRNA sequence
Length = 770
Score = 52.0 bits (26), Expect = 6e-005
Identities = 50/58 (86%)
Strand = Plus / Plus
Query: 690 ccagggcatttggaattcctgtccgtacatttactcatgaggtagtgacattatggta 747
||||||||||||||||||| || | || |||||||||||||| || ||||| |||||
Sbjct: 610 ccagggcatttggaattccagtgaggacctttactcatgaggtggttacattgtggta 667
>gb|DR072155.1|DR072155 RTDK1_24_H12.b1_A029 Roots, dark Pinus taeda cDNA clone
RTDK1_24_H12_A029 3', mRNA sequence
Length = 698
Score = 50.1 bits (25), Expect = 2e-004
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 794 gttgatgtgtggtctgtgggctgtatctttgcggaaatggt 834
|||||||| |||||||| || ||||||||||| ||||||||
Sbjct: 10 gttgatgtttggtctgttggatgtatctttgctgaaatggt 50
>gb|DR686314.1|DR686314 EST1076392 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWABE68 3' end, mRNA sequence
Length = 620
Score = 50.1 bits (25), Expect = 2e-004
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 794 gttgatgtgtggtctgtgggctgtatctttgcggaaatggt 834
|||||||| |||||||| || ||||||||||| ||||||||
Sbjct: 444 gttgatgtttggtctgttggatgtatctttgctgaaatggt 484
>gb|DR047620.1|DR047620 RTBOR1_2_G01.b1_A029 Roots plus added boron Pinus taeda cDNA clone
RTBOR1_2_G01_A029 3', mRNA sequence
Length = 589
Score = 48.1 bits (24), Expect = 0.001
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 795 ttgatgtgtggtctgtgggctgtatctttgcggaaatggt 834
||||||| |||||||| || ||||||||||| ||||||||
Sbjct: 1 ttgatgtttggtctgttggatgtatctttgctgaaatggt 40
Score = 40.1 bits (20), Expect = 0.23
Identities = 38/44 (86%)
Strand = Plus / Plus
Query: 923 tggccaggagtcagttgtttgcctgacttcaagacagctttccc 966
||||||||||||| | | |||||||||||||| |||| |||||
Sbjct: 129 tggccaggagtcacctctctgcctgacttcaagtcagccttccc 172
>gb|DR111806.1|DR111806 RTS1_20_H03.b1_A029 Roots minus sulfur Pinus taeda cDNA clone
RTS1_20_H03_A029 3', mRNA sequence
Length = 596
Score = 48.1 bits (24), Expect = 0.001
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 795 ttgatgtgtggtctgtgggctgtatctttgcggaaatggt 834
||||||| |||||||| || ||||||||||| ||||||||
Sbjct: 1 ttgatgtttggtctgttggatgtatctttgctgaaatggt 40
Score = 40.1 bits (20), Expect = 0.23
Identities = 38/44 (86%)
Strand = Plus / Plus
Query: 923 tggccaggagtcagttgtttgcctgacttcaagacagctttccc 966
||||||||||||| | | |||||||||||||| |||| |||||
Sbjct: 129 tggccaggagtcacctctctgcctgacttcaagtcagccttccc 172
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 134,322
Number of Sequences: 355925
Number of extensions: 134322
Number of successful extensions: 33226
Number of sequences better than 0.5: 68
Number of HSP's better than 0.5 without gapping: 68
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 33027
Number of HSP's gapped (non-prelim): 196
length of query: 1354
length of database: 217,277,237
effective HSP length: 19
effective length of query: 1335
effective length of database: 210,514,662
effective search space: 281037073770
effective search space used: 281037073770
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)