BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2419137.2.1
(989 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN784300.1|CN784300 EST782991 Sequencing ESTs from loblo... 44 0.011
gb|CN784715.1|CN784715 EST783406 Sequencing ESTs from loblo... 44 0.011
gb|CV148673.1|CV148673 EST859882 Sequencing ESTs from loblo... 44 0.011
gb|DN448526.1|DN448526 EST944325 Sequencing ESTs from loblo... 44 0.011
gb|DN465169.1|DN465169 EST960968 Sequencing ESTs from loblo... 44 0.011
gb|DT624437.1|DT624437 EST1158712 Sequencing ESTs from lobl... 44 0.011
gb|DT627273.1|DT627273 EST1160349 Sequencing ESTs from lobl... 44 0.011
gb|BG039795.1|BG039795 NXSI_101_B01_F NXSI (Nsf Xylem Side ... 40 0.17
gb|BG275860.1|BG275860 NXSI_148_G05_F NXSI (Nsf Xylem Side ... 40 0.17
gb|BQ701939.1|BQ701939 NXSI_122_D08_F NXSI (Nsf Xylem Side ... 40 0.17
gb|CF396059.1|CF396059 RTDS2_20_B04.g1_A021 Drought-stresse... 40 0.17
gb|CN784449.1|CN784449 EST783140 Sequencing ESTs from loblo... 40 0.17
gb|CN784891.1|CN784891 EST783582 Sequencing ESTs from loblo... 40 0.17
gb|CN785158.1|CN785158 EST783849 Sequencing ESTs from loblo... 40 0.17
gb|CN785392.1|CN785392 EST784083 Sequencing ESTs from loblo... 40 0.17
gb|CN785819.1|CN785819 EST784510 Sequencing ESTs from loblo... 40 0.17
gb|CN785837.1|CN785837 EST784528 Sequencing ESTs from loblo... 40 0.17
gb|CO162367.1|CO162367 FLD1_34_H01.g1_A029 Root flooded Pin... 40 0.17
gb|CO409276.1|CO409276 EST839661 Sequencing ESTs from loblo... 40 0.17
gb|CO409884.1|CO409884 EST840269 Sequencing ESTs from loblo... 40 0.17
gb|CO410131.1|CO410131 EST840516 Sequencing ESTs from loblo... 40 0.17
gb|CO410532.1|CO410532 EST840917 Sequencing ESTs from loblo... 40 0.17
gb|CO410601.1|CO410601 EST840986 Sequencing ESTs from loblo... 40 0.17
gb|CO410832.1|CO410832 EST841217 Sequencing ESTs from loblo... 40 0.17
gb|CO410845.1|CO410845 EST841230 Sequencing ESTs from loblo... 40 0.17
gb|CO411008.1|CO411008 EST841393 Sequencing ESTs from loblo... 40 0.17
gb|CO411259.1|CO411259 EST841644 Sequencing ESTs from loblo... 40 0.17
gb|CO411407.1|CO411407 EST841792 Sequencing ESTs from loblo... 40 0.17
gb|CO411918.1|CO411918 EST842303 Sequencing ESTs from loblo... 40 0.17
gb|CO412021.1|CO412021 EST842406 Sequencing ESTs from loblo... 40 0.17
gb|CO413090.1|CO413090 EST843475 Sequencing ESTs from loblo... 40 0.17
gb|CO413459.1|CO413459 EST843844 Sequencing ESTs from loblo... 40 0.17
gb|CO413802.1|CO413802 EST844187 Sequencing ESTs from loblo... 40 0.17
gb|CO413933.1|CO413933 EST844318 Sequencing ESTs from loblo... 40 0.17
gb|CO414307.1|CO414307 EST844692 Sequencing ESTs from loblo... 40 0.17
gb|CO414433.1|CO414433 EST844818 Sequencing ESTs from loblo... 40 0.17
gb|CO414543.1|CO414543 EST844928 Sequencing ESTs from loblo... 40 0.17
gb|CV134454.1|CV134454 EST845663 Sequencing ESTs from loblo... 40 0.17
gb|CV134680.1|CV134680 EST845889 Sequencing ESTs from loblo... 40 0.17
gb|CV134696.1|CV134696 EST845905 Sequencing ESTs from loblo... 40 0.17
gb|CV134800.1|CV134800 EST846009 Sequencing ESTs from loblo... 40 0.17
gb|CV134949.1|CV134949 EST846158 Sequencing ESTs from loblo... 40 0.17
gb|CV136509.1|CV136509 EST847718 Sequencing ESTs from loblo... 40 0.17
gb|CV136948.1|CV136948 EST848157 Sequencing ESTs from loblo... 40 0.17
gb|CV136987.1|CV136987 EST848196 Sequencing ESTs from loblo... 40 0.17
gb|CV137364.1|CV137364 EST848573 Sequencing ESTs from loblo... 40 0.17
gb|CV137417.1|CV137417 EST848626 Sequencing ESTs from loblo... 40 0.17
gb|CV138268.1|CV138268 EST849477 Sequencing ESTs from loblo... 40 0.17
gb|CV138703.1|CV138703 EST849912 Sequencing ESTs from loblo... 40 0.17
gb|CV138839.1|CV138839 EST850048 Sequencing ESTs from loblo... 40 0.17
gb|CV139191.1|CV139191 EST850400 Sequencing ESTs from loblo... 40 0.17
gb|CV139196.1|CV139196 EST850405 Sequencing ESTs from loblo... 40 0.17
gb|CV139205.1|CV139205 EST850414 Sequencing ESTs from loblo... 40 0.17
gb|CV143480.1|CV143480 EST854689 Sequencing ESTs from loblo... 40 0.17
gb|CV143847.1|CV143847 EST855056 Sequencing ESTs from loblo... 40 0.17
gb|CV144063.1|CV144063 EST855272 Sequencing ESTs from loblo... 40 0.17
gb|CV145064.1|CV145064 EST856273 Sequencing ESTs from loblo... 40 0.17
gb|CV145478.1|CV145478 EST856687 Sequencing ESTs from loblo... 40 0.17
gb|CV145745.1|CV145745 EST856954 Sequencing ESTs from loblo... 40 0.17
gb|CV145876.1|CV145876 EST857085 Sequencing ESTs from loblo... 40 0.17
gb|CV146103.1|CV146103 EST857312 Sequencing ESTs from loblo... 40 0.17
gb|CV146391.1|CV146391 EST857600 Sequencing ESTs from loblo... 40 0.17
gb|CV146406.1|CV146406 EST857615 Sequencing ESTs from loblo... 40 0.17
gb|CV146496.1|CV146496 EST857705 Sequencing ESTs from loblo... 40 0.17
gb|CV146589.1|CV146589 EST857798 Sequencing ESTs from loblo... 40 0.17
gb|CV146685.1|CV146685 EST857894 Sequencing ESTs from loblo... 40 0.17
gb|CV146884.1|CV146884 EST858093 Sequencing ESTs from loblo... 40 0.17
gb|CV147114.1|CV147114 EST858323 Sequencing ESTs from loblo... 40 0.17
gb|CV147196.1|CV147196 EST858405 Sequencing ESTs from loblo... 40 0.17
gb|CV147422.1|CV147422 EST858631 Sequencing ESTs from loblo... 40 0.17
gb|CV147450.1|CV147450 EST858659 Sequencing ESTs from loblo... 40 0.17
gb|CV147495.1|CV147495 EST858704 Sequencing ESTs from loblo... 40 0.17
gb|CV147567.1|CV147567 EST858776 Sequencing ESTs from loblo... 40 0.17
gb|CV147922.1|CV147922 EST859131 Sequencing ESTs from loblo... 40 0.17
gb|CV148025.1|CV148025 EST859234 Sequencing ESTs from loblo... 40 0.17
gb|CV148154.1|CV148154 EST859363 Sequencing ESTs from loblo... 40 0.17
gb|CV148421.1|CV148421 EST859630 Sequencing ESTs from loblo... 40 0.17
gb|CV148672.1|CV148672 EST859881 Sequencing ESTs from loblo... 40 0.17
gb|DN445408.1|DN445408 EST941207 Sequencing ESTs from loblo... 40 0.17
gb|DN445417.1|DN445417 EST941216 Sequencing ESTs from loblo... 40 0.17
gb|DN445442.1|DN445442 EST941241 Sequencing ESTs from loblo... 40 0.17
gb|DN445507.1|DN445507 EST941306 Sequencing ESTs from loblo... 40 0.17
gb|DN445708.1|DN445708 EST941507 Sequencing ESTs from loblo... 40 0.17
gb|DN446388.1|DN446388 EST942187 Sequencing ESTs from loblo... 40 0.17
gb|DN446666.1|DN446666 EST942465 Sequencing ESTs from loblo... 40 0.17
gb|DN446796.1|DN446796 EST942595 Sequencing ESTs from loblo... 40 0.17
gb|DN446866.1|DN446866 EST942665 Sequencing ESTs from loblo... 40 0.17
gb|DN447155.1|DN447155 EST942954 Sequencing ESTs from loblo... 40 0.17
gb|DN447213.1|DN447213 EST943012 Sequencing ESTs from loblo... 40 0.17
gb|DN447948.1|DN447948 EST943747 Sequencing ESTs from loblo... 40 0.17
gb|DN447979.1|DN447979 EST943778 Sequencing ESTs from loblo... 40 0.17
gb|DN448171.1|DN448171 EST943970 Sequencing ESTs from loblo... 40 0.17
gb|DN448185.1|DN448185 EST943984 Sequencing ESTs from loblo... 40 0.17
gb|DN448491.1|DN448491 EST944290 Sequencing ESTs from loblo... 40 0.17
gb|DN448790.1|DN448790 EST944589 Sequencing ESTs from loblo... 40 0.17
gb|DN449051.1|DN449051 EST944850 Sequencing ESTs from loblo... 40 0.17
gb|DN449957.1|DN449957 EST945756 Sequencing ESTs from loblo... 40 0.17
gb|DN450207.1|DN450207 EST946006 Sequencing ESTs from loblo... 40 0.17
gb|DN450512.1|DN450512 EST946311 Sequencing ESTs from loblo... 40 0.17
gb|DN450518.1|DN450518 EST946317 Sequencing ESTs from loblo... 40 0.17
gb|DN451000.1|DN451000 EST946799 Sequencing ESTs from loblo... 40 0.17
gb|DN451374.1|DN451374 EST947173 Sequencing ESTs from loblo... 40 0.17
gb|DN451466.1|DN451466 EST947265 Sequencing ESTs from loblo... 40 0.17
gb|DN451558.1|DN451558 EST947357 Sequencing ESTs from loblo... 40 0.17
gb|DN451747.1|DN451747 EST947546 Sequencing ESTs from loblo... 40 0.17
gb|DN451977.1|DN451977 EST947776 Sequencing ESTs from loblo... 40 0.17
gb|DN452075.1|DN452075 EST947874 Sequencing ESTs from loblo... 40 0.17
gb|DN452501.1|DN452501 EST948300 Sequencing ESTs from loblo... 40 0.17
gb|DN452712.1|DN452712 EST948511 Sequencing ESTs from loblo... 40 0.17
gb|DN453079.1|DN453079 EST948878 Sequencing ESTs from loblo... 40 0.17
gb|DN453366.1|DN453366 EST949165 Sequencing ESTs from loblo... 40 0.17
gb|DN453555.1|DN453555 EST949354 Sequencing ESTs from loblo... 40 0.17
gb|DN453711.1|DN453711 EST949510 Sequencing ESTs from loblo... 40 0.17
gb|DN453747.1|DN453747 EST949546 Sequencing ESTs from loblo... 40 0.17
gb|DN454215.1|DN454215 EST950014 Sequencing ESTs from loblo... 40 0.17
gb|DN454317.1|DN454317 EST950116 Sequencing ESTs from loblo... 40 0.17
gb|DN454359.1|DN454359 EST950158 Sequencing ESTs from loblo... 40 0.17
gb|DN454392.1|DN454392 EST950191 Sequencing ESTs from loblo... 40 0.17
gb|DN455039.1|DN455039 EST950838 Sequencing ESTs from loblo... 40 0.17
gb|DN455372.1|DN455372 EST951171 Sequencing ESTs from loblo... 40 0.17
gb|DN455399.1|DN455399 EST951198 Sequencing ESTs from loblo... 40 0.17
gb|DN455494.1|DN455494 EST951293 Sequencing ESTs from loblo... 40 0.17
gb|DN455592.1|DN455592 EST951391 Sequencing ESTs from loblo... 40 0.17
gb|DN455750.1|DN455750 EST951549 Sequencing ESTs from loblo... 40 0.17
gb|DN455807.1|DN455807 EST951606 Sequencing ESTs from loblo... 40 0.17
gb|DN456347.1|DN456347 EST952146 Sequencing ESTs from loblo... 40 0.17
gb|DN456374.1|DN456374 EST952173 Sequencing ESTs from loblo... 40 0.17
gb|DN456660.1|DN456660 EST952459 Sequencing ESTs from loblo... 40 0.17
gb|DN456791.1|DN456791 EST952590 Sequencing ESTs from loblo... 40 0.17
gb|DN456811.1|DN456811 EST952610 Sequencing ESTs from loblo... 40 0.17
gb|DN457212.1|DN457212 EST953011 Sequencing ESTs from loblo... 40 0.17
gb|DN457299.1|DN457299 EST953098 Sequencing ESTs from loblo... 40 0.17
gb|DN457371.1|DN457371 EST953170 Sequencing ESTs from loblo... 40 0.17
gb|DN457778.1|DN457778 EST953577 Sequencing ESTs from loblo... 40 0.17
gb|DN457936.1|DN457936 EST953735 Sequencing ESTs from loblo... 40 0.17
gb|DN458719.1|DN458719 EST954518 Sequencing ESTs from loblo... 40 0.17
gb|DN458744.1|DN458744 EST954543 Sequencing ESTs from loblo... 40 0.17
gb|DN458771.1|DN458771 EST954570 Sequencing ESTs from loblo... 40 0.17
gb|DN458986.1|DN458986 EST954785 Sequencing ESTs from loblo... 40 0.17
gb|DN459013.1|DN459013 EST954812 Sequencing ESTs from loblo... 40 0.17
gb|DN459165.1|DN459165 EST954964 Sequencing ESTs from loblo... 40 0.17
gb|DN459430.1|DN459430 EST955229 Sequencing ESTs from loblo... 40 0.17
gb|DN459768.1|DN459768 EST955567 Sequencing ESTs from loblo... 40 0.17
gb|DN460216.1|DN460216 EST956015 Sequencing ESTs from loblo... 40 0.17
gb|DN460266.1|DN460266 EST956065 Sequencing ESTs from loblo... 40 0.17
gb|DN460355.1|DN460355 EST956154 Sequencing ESTs from loblo... 40 0.17
gb|DN460425.1|DN460425 EST956224 Sequencing ESTs from loblo... 40 0.17
gb|DN460554.1|DN460554 EST956353 Sequencing ESTs from loblo... 40 0.17
gb|DN460753.1|DN460753 EST956552 Sequencing ESTs from loblo... 40 0.17
gb|DN460799.1|DN460799 EST956598 Sequencing ESTs from loblo... 40 0.17
gb|DN461085.1|DN461085 EST956884 Sequencing ESTs from loblo... 40 0.17
gb|DN461215.1|DN461215 EST957014 Sequencing ESTs from loblo... 40 0.17
gb|DN461823.1|DN461823 EST957622 Sequencing ESTs from loblo... 40 0.17
gb|DN462023.1|DN462023 EST957822 Sequencing ESTs from loblo... 40 0.17
gb|DN462030.1|DN462030 EST957829 Sequencing ESTs from loblo... 40 0.17
gb|DN462364.1|DN462364 EST958163 Sequencing ESTs from loblo... 40 0.17
gb|DN462450.1|DN462450 EST958249 Sequencing ESTs from loblo... 40 0.17
gb|DN462507.1|DN462507 EST958306 Sequencing ESTs from loblo... 40 0.17
gb|DN462574.1|DN462574 EST958373 Sequencing ESTs from loblo... 40 0.17
gb|DN462774.1|DN462774 EST958573 Sequencing ESTs from loblo... 40 0.17
gb|DN462862.1|DN462862 EST958661 Sequencing ESTs from loblo... 40 0.17
gb|DN462884.1|DN462884 EST958683 Sequencing ESTs from loblo... 40 0.17
gb|DN462918.1|DN462918 EST958717 Sequencing ESTs from loblo... 40 0.17
gb|DN463011.1|DN463011 EST958810 Sequencing ESTs from loblo... 40 0.17
gb|DN463142.1|DN463142 EST958941 Sequencing ESTs from loblo... 40 0.17
gb|DN463250.1|DN463250 EST959049 Sequencing ESTs from loblo... 40 0.17
gb|DN464254.1|DN464254 EST960053 Sequencing ESTs from loblo... 40 0.17
gb|DN464292.1|DN464292 EST960091 Sequencing ESTs from loblo... 40 0.17
gb|DN464370.1|DN464370 EST960169 Sequencing ESTs from loblo... 40 0.17
gb|DN464375.1|DN464375 EST960174 Sequencing ESTs from loblo... 40 0.17
gb|DN464483.1|DN464483 EST960282 Sequencing ESTs from loblo... 40 0.17
gb|DN465001.1|DN465001 EST960800 Sequencing ESTs from loblo... 40 0.17
gb|DN465164.1|DN465164 EST960963 Sequencing ESTs from loblo... 40 0.17
gb|DN465397.1|DN465397 EST961196 Sequencing ESTs from loblo... 40 0.17
gb|DN465507.1|DN465507 EST961306 Sequencing ESTs from loblo... 40 0.17
gb|DN609942.1|DN609942 EST962992 Subtracted pine embryo lib... 40 0.17
gb|DN615178.1|DN615178 EST968228 Subtracted pine embryo lib... 40 0.17
gb|DR012895.1|DR012895 HEAT1_15_E03.g1_A029 Root at 37 C fo... 40 0.17
gb|DR089581.1|DR089581 RTAL1_9_C10.g1_A029 Roots plus added... 40 0.17
gb|DR181773.1|DR181773 RTMNUT1_41_A02.b1_A029 Roots minus m... 40 0.17
gb|DT624421.1|DT624421 EST1158696 Sequencing ESTs from lobl... 40 0.17
gb|DT624704.1|DT624704 EST1159039 Sequencing ESTs from lobl... 40 0.17
gb|DT625112.1|DT625112 EST1159387 Sequencing ESTs from lobl... 40 0.17
gb|DT625351.1|DT625351 EST1159626 Sequencing ESTs from lobl... 40 0.17
gb|DT626847.1|DT626847 EST1159923 Sequencing ESTs from lobl... 40 0.17
gb|DT627353.1|DT627353 EST1160429 Sequencing ESTs from lobl... 40 0.17
gb|DT627415.1|DT627415 EST1160491 Sequencing ESTs from lobl... 40 0.17
>gb|CN784300.1|CN784300 EST782991 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone PIAAJ74 5' end, mRNA sequence
Length = 670
Score = 44.1 bits (22), Expect = 0.011
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 29 ggcggatctggtggtggtggaagcggtggcggcggcgg 66
||||| |||||||||||||| |||| |||||||||||
Sbjct: 625 ggcggttctggtggtggtggcggcggcggcggcggcgg 662
>gb|CN784715.1|CN784715 EST783406 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone PIAAP59 5' end, mRNA sequence
Length = 830
Score = 44.1 bits (22), Expect = 0.011
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 29 ggcggatctggtggtggtggaagcggtggcggcggcgg 66
||||| |||||||||||||| |||| |||||||||||
Sbjct: 625 ggcggttctggtggtggtggcggcggcggcggcggcgg 662
>gb|CV148673.1|CV148673 EST859882 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone RPIEK70 5' end, mRNA sequence
Length = 855
Score = 44.1 bits (22), Expect = 0.011
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 29 ggcggatctggtggtggtggaagcggtggcggcggcgg 66
||||| |||||||||||||| |||| |||||||||||
Sbjct: 625 ggcggttctggtggtggtggcggcggcggcggcggcgg 662
>gb|DN448526.1|DN448526 EST944325 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone RPIC587 5' end, mRNA sequence
Length = 859
Score = 44.1 bits (22), Expect = 0.011
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 29 ggcggatctggtggtggtggaagcggtggcggcggcgg 66
||||| |||||||||||||| |||| |||||||||||
Sbjct: 573 ggcggttctggtggtggtggcggcggcggcggcggcgg 610
>gb|DN465169.1|DN465169 EST960968 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone RPIJL93 5' end, mRNA sequence
Length = 861
Score = 44.1 bits (22), Expect = 0.011
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 29 ggcggatctggtggtggtggaagcggtggcggcggcgg 66
||||| |||||||||||||| |||| |||||||||||
Sbjct: 600 ggcggttctggtggtggtggcggcggcggcggcggcgg 637
>gb|DT624437.1|DT624437 EST1158712 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone PIMAE59 5' end, mRNA sequence
Length = 815
Score = 44.1 bits (22), Expect = 0.011
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 29 ggcggatctggtggtggtggaagcggtggcggcggcgg 66
||||| |||||||||||||| |||| |||||||||||
Sbjct: 573 ggcggttctggtggtggtggcggcggcggcggcggcgg 610
>gb|DT627273.1|DT627273 EST1160349 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone PIMAW80 5' end, mRNA sequence
Length = 851
Score = 44.1 bits (22), Expect = 0.011
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 29 ggcggatctggtggtggtggaagcggtggcggcggcgg 66
||||| |||||||||||||| |||| |||||||||||
Sbjct: 601 ggcggttctggtggtggtggcggcggcggcggcggcgg 638
>gb|BG039795.1|BG039795 NXSI_101_B01_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_101_B01 5' similar to Arabidopsis thaliana
sequence At4g36020 glycine-rich protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 379
Score = 40.1 bits (20), Expect = 0.17
Identities = 32/36 (88%)
Strand = Plus / Plus
Query: 29 ggcggatctggtggtggtggaagcggtggcggcggc 64
||||| |||||||||||||| |||| |||||||||
Sbjct: 131 ggcggttctggtggtggtggcggcggcggcggcggc 166
>gb|BG275860.1|BG275860 NXSI_148_G05_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_148_G05 5' similar to Arabidopsis thaliana
sequence At4g36020 glycine-rich protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 221
Score = 40.1 bits (20), Expect = 0.17
Identities = 32/36 (88%)
Strand = Plus / Plus
Query: 29 ggcggatctggtggtggtggaagcggtggcggcggc 64
||||| |||||||||||||| |||| |||||||||
Sbjct: 131 ggcggttctggtggtggtggcggcggcggcggcggc 166
>gb|BQ701939.1|BQ701939 NXSI_122_D08_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_122_D08 5' similar to Arabidopsis thaliana
sequence At4g36020 glycine-rich protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 425
Score = 40.1 bits (20), Expect = 0.17
Identities = 32/36 (88%)
Strand = Plus / Plus
Query: 29 ggcggatctggtggtggtggaagcggtggcggcggc 64
||||| |||||||||||||| |||| |||||||||
Sbjct: 179 ggcggttctggtggtggtggcggcggcggcggcggc 214
>gb|CF396059.1|CF396059 RTDS2_20_B04.g1_A021 Drought-stressed loblolly pine roots DS2 Pinus
taeda cDNA clone RTDS2_20_B04_A021 5', mRNA sequence
Length = 266
Score = 40.1 bits (20), Expect = 0.17
Identities = 32/36 (88%)
Strand = Plus / Plus
Query: 29 ggcggatctggtggtggtggaagcggtggcggcggc 64
||||| |||||||||||||| |||| |||||||||
Sbjct: 91 ggcggttctggtggtggtggcggcggcggcggcggc 126
>gb|CN784449.1|CN784449 EST783140 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone PIAAL88 5' end, mRNA sequence
Length = 974
Score = 40.1 bits (20), Expect = 0.17
Identities = 32/36 (88%)
Strand = Plus / Plus
Query: 29 ggcggatctggtggtggtggaagcggtggcggcggc 64
||||| |||||||||||||| |||| |||||||||
Sbjct: 576 ggcggttctggtggtggtggcggcggcggcggcggc 611
>gb|CN784891.1|CN784891 EST783582 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone PIAAR89 5' end, mRNA sequence
Length = 1025
Score = 40.1 bits (20), Expect = 0.17
Identities = 32/36 (88%)
Strand = Plus / Plus
Query: 29 ggcggatctggtggtggtggaagcggtggcggcggc 64
||||| |||||||||||||| |||| |||||||||
Sbjct: 560 ggcggttctggtggtggtggcggcggcggcggcggc 595
>gb|CN785158.1|CN785158 EST783849 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone PIAAV33 5' end, mRNA sequence
Length = 870
Score = 40.1 bits (20), Expect = 0.17
Identities = 32/36 (88%)
Strand = Plus / Plus
Query: 29 ggcggatctggtggtggtggaagcggtggcggcggc 64
||||| |||||||||||||| |||| |||||||||
Sbjct: 586 ggcggttctggtggtggtggcggcggcggcggcggc 621
>gb|CN785392.1|CN785392 EST784083 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone PIAAY36 5' end, mRNA sequence
Length = 856
Score = 40.1 bits (20), Expect = 0.17
Identities = 32/36 (88%)
Strand = Plus / Plus
Query: 29 ggcggatctggtggtggtggaagcggtggcggcggc 64
||||| |||||||||||||| |||| |||||||||
Sbjct: 604 ggcggttctggtggtggtggcggcggcggcggcggc 639
>gb|CN785819.1|CN785819 EST784510 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone PIAB390 5' end, mRNA sequence
Length = 830
Score = 40.1 bits (20), Expect = 0.17
Identities = 32/36 (88%)
Strand = Plus / Plus
Query: 29 ggcggatctggtggtggtggaagcggtggcggcggc 64
||||| |||||||||||||| |||| |||||||||
Sbjct: 586 ggcggttctggtggtggtggcggcggcggcggcggc 621
>gb|CN785837.1|CN785837 EST784528 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone PIAB416 5' end, mRNA sequence
Length = 860
Score = 40.1 bits (20), Expect = 0.17
Identities = 32/36 (88%)
Strand = Plus / Plus
Query: 29 ggcggatctggtggtggtggaagcggtggcggcggc 64
||||| |||||||||||||| |||| |||||||||
Sbjct: 604 ggcggttctggtggtggtggcggcggcggcggcggc 639
>gb|CO162367.1|CO162367 FLD1_34_H01.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_34_H01_A029 5', mRNA sequence
Length = 698
Score = 40.1 bits (20), Expect = 0.17
Identities = 32/36 (88%)
Strand = Plus / Minus
Query: 29 ggcggatctggtggtggtggaagcggtggcggcggc 64
||||| |||||||||||||| |||| |||||||||
Sbjct: 408 ggcggttctggtggtggtggcggcggcggcggcggc 373
>gb|CO409276.1|CO409276 EST839661 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone PIAKN69 5' end, mRNA sequence
Length = 757
Score = 40.1 bits (20), Expect = 0.17
Identities = 32/36 (88%)
Strand = Plus / Plus
Query: 29 ggcggatctggtggtggtggaagcggtggcggcggc 64
||||| |||||||||||||| |||| |||||||||
Sbjct: 493 ggcggttctggtggtggtggcggcggcggcggcggc 528
>gb|CO409884.1|CO409884 EST840269 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone PIAKV77 5' end, mRNA sequence
Length = 961
Score = 40.1 bits (20), Expect = 0.17
Identities = 32/36 (88%)
Strand = Plus / Plus
Query: 29 ggcggatctggtggtggtggaagcggtggcggcggc 64
||||| |||||||||||||| |||| |||||||||
Sbjct: 493 ggcggttctggtggtggtggcggcggcggcggcggc 528
>gb|CO410131.1|CO410131 EST840516 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone PIAKZ09 5' end, mRNA sequence
Length = 830
Score = 40.1 bits (20), Expect = 0.17
Identities = 32/36 (88%)
Strand = Plus / Plus
Query: 29 ggcggatctggtggtggtggaagcggtggcggcggc 64
||||| |||||||||||||| |||| |||||||||
Sbjct: 516 ggcggttctggtggtggtggcggcggcggcggcggc 551
>gb|CO410532.1|CO410532 EST840917 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone PIAL435 5' end, mRNA sequence
Length = 876
Score = 40.1 bits (20), Expect = 0.17
Identities = 32/36 (88%)
Strand = Plus / Plus
Query: 29 ggcggatctggtggtggtggaagcggtggcggcggc 64
||||| |||||||||||||| |||| |||||||||
Sbjct: 606 ggcggttctggtggtggtggcggcggcggcggcggc 641
>gb|CO410601.1|CO410601 EST840986 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone PIAL524 5' end, mRNA sequence
Length = 767
Score = 40.1 bits (20), Expect = 0.17
Identities = 32/36 (88%)
Strand = Plus / Plus
Query: 29 ggcggatctggtggtggtggaagcggtggcggcggc 64
||||| |||||||||||||| |||| |||||||||
Sbjct: 595 ggcggttctggtggtggtggcggcggcggcggcggc 630
>gb|CO410832.1|CO410832 EST841217 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone PIALC40 5' end, mRNA sequence
Length = 952
Score = 40.1 bits (20), Expect = 0.17
Identities = 32/36 (88%)
Strand = Plus / Plus
Query: 29 ggcggatctggtggtggtggaagcggtggcggcggc 64
||||| |||||||||||||| |||| |||||||||
Sbjct: 518 ggcggttctggtggtggtggcggcggcggcggcggc 553
>gb|CO410845.1|CO410845 EST841230 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone PIALC55 5' end, mRNA sequence
Length = 909
Score = 40.1 bits (20), Expect = 0.17
Identities = 32/36 (88%)
Strand = Plus / Plus
Query: 29 ggcggatctggtggtggtggaagcggtggcggcggc 64
||||| |||||||||||||| |||| |||||||||
Sbjct: 586 ggcggttctggtggtggtggcggcggcggcggcggc 621
>gb|CO411008.1|CO411008 EST841393 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone PIALE62 5' end, mRNA sequence
Length = 845
Score = 40.1 bits (20), Expect = 0.17
Identities = 32/36 (88%)
Strand = Plus / Plus
Query: 29 ggcggatctggtggtggtggaagcggtggcggcggc 64
||||| |||||||||||||| |||| |||||||||
Sbjct: 586 ggcggttctggtggtggtggcggcggcggcggcggc 621
>gb|CO411259.1|CO411259 EST841644 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone PIALH83 5' end, mRNA sequence
Length = 937
Score = 40.1 bits (20), Expect = 0.17
Identities = 32/36 (88%)
Strand = Plus / Plus
Query: 29 ggcggatctggtggtggtggaagcggtggcggcggc 64
||||| |||||||||||||| |||| |||||||||
Sbjct: 516 ggcggttctggtggtggtggcggcggcggcggcggc 551
>gb|CO411407.1|CO411407 EST841792 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone PIALJ83 5' end, mRNA sequence
Length = 791
Score = 40.1 bits (20), Expect = 0.17
Identities = 32/36 (88%)
Strand = Plus / Plus
Query: 29 ggcggatctggtggtggtggaagcggtggcggcggc 64
||||| |||||||||||||| |||| |||||||||
Sbjct: 595 ggcggttctggtggtggtggcggcggcggcggcggc 630
>gb|CO411918.1|CO411918 EST842303 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone PIALQ59 5' end, mRNA sequence
Length = 920
Score = 40.1 bits (20), Expect = 0.17
Identities = 32/36 (88%)
Strand = Plus / Plus
Query: 29 ggcggatctggtggtggtggaagcggtggcggcggc 64
||||| |||||||||||||| |||| |||||||||
Sbjct: 516 ggcggttctggtggtggtggcggcggcggcggcggc 551
>gb|CO412021.1|CO412021 EST842406 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone PIALR80 5' end, mRNA sequence
Length = 884
Score = 40.1 bits (20), Expect = 0.17
Identities = 32/36 (88%)
Strand = Plus / Plus
Query: 29 ggcggatctggtggtggtggaagcggtggcggcggc 64
||||| |||||||||||||| |||| |||||||||
Sbjct: 459 ggcggttctggtggtggtggcggcggcggcggcggc 494
>gb|CO413090.1|CO413090 EST843475 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone PIAM602 5' end, mRNA sequence
Length = 884
Score = 40.1 bits (20), Expect = 0.17
Identities = 32/36 (88%)
Strand = Plus / Plus
Query: 29 ggcggatctggtggtggtggaagcggtggcggcggc 64
||||| |||||||||||||| |||| |||||||||
Sbjct: 459 ggcggttctggtggtggtggcggcggcggcggcggc 494
>gb|CO413459.1|CO413459 EST843844 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone PIAMB22 5' end, mRNA sequence
Length = 954
Score = 40.1 bits (20), Expect = 0.17
Identities = 32/36 (88%)
Strand = Plus / Plus
Query: 29 ggcggatctggtggtggtggaagcggtggcggcggc 64
||||| |||||||||||||| |||| |||||||||
Sbjct: 572 ggcggttctggtggtggtggcggcggcggcggcggc 607
>gb|CO413802.1|CO413802 EST844187 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone PIAMF70 5' end, mRNA sequence
Length = 744
Score = 40.1 bits (20), Expect = 0.17
Identities = 32/36 (88%)
Strand = Plus / Plus
Query: 29 ggcggatctggtggtggtggaagcggtggcggcggc 64
||||| |||||||||||||| |||| |||||||||
Sbjct: 525 ggcggttctggtggtggtggcggcggcggcggcggc 560
>gb|CO413933.1|CO413933 EST844318 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone PIAMH44 5' end, mRNA sequence
Length = 769
Score = 40.1 bits (20), Expect = 0.17
Identities = 32/36 (88%)
Strand = Plus / Plus
Query: 29 ggcggatctggtggtggtggaagcggtggcggcggc 64
||||| |||||||||||||| |||| |||||||||
Sbjct: 524 ggcggttctggtggtggtggcggcggcggcggcggc 559
>gb|CO414307.1|CO414307 EST844692 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone PIAMM57 5' end, mRNA sequence
Length = 682
Score = 40.1 bits (20), Expect = 0.17
Identities = 32/36 (88%)
Strand = Plus / Plus
Query: 29 ggcggatctggtggtggtggaagcggtggcggcggc 64
||||| |||||||||||||| |||| |||||||||
Sbjct: 318 ggcggttctggtggtggtggcggcggcggcggcggc 353
>gb|CO414433.1|CO414433 EST844818 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone PIAMO25 5' end, mRNA sequence
Length = 790
Score = 40.1 bits (20), Expect = 0.17
Identities = 32/36 (88%)
Strand = Plus / Plus
Query: 29 ggcggatctggtggtggtggaagcggtggcggcggc 64
||||| |||||||||||||| |||| |||||||||
Sbjct: 595 ggcggttctggtggtggtggcggcggcggcggcggc 630
>gb|CO414543.1|CO414543 EST844928 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone PIAMP79 5' end, mRNA sequence
Length = 826
Score = 40.1 bits (20), Expect = 0.17
Identities = 32/36 (88%)
Strand = Plus / Plus
Query: 29 ggcggatctggtggtggtggaagcggtggcggcggc 64
||||| |||||||||||||| |||| |||||||||
Sbjct: 595 ggcggttctggtggtggtggcggcggcggcggcggc 630
>gb|CV134454.1|CV134454 EST845663 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone PIATD58 5' end, mRNA sequence
Length = 622
Score = 40.1 bits (20), Expect = 0.17
Identities = 32/36 (88%)
Strand = Plus / Minus
Query: 29 ggcggatctggtggtggtggaagcggtggcggcggc 64
||||| |||||||||||||| |||| |||||||||
Sbjct: 485 ggcggttctggtggtggtggcggcggcggcggcggc 450
>gb|CV134680.1|CV134680 EST845889 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone PICCE07 5' end, mRNA sequence
Length = 979
Score = 40.1 bits (20), Expect = 0.17
Identities = 32/36 (88%)
Strand = Plus / Plus
Query: 29 ggcggatctggtggtggtggaagcggtggcggcggc 64
||||| |||||||||||||| |||| |||||||||
Sbjct: 397 ggcggttctggtggtggtggcggcggcggcggcggc 432
>gb|CV134696.1|CV134696 EST845905 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone PICCE27 5' end, mRNA sequence
Length = 919
Score = 40.1 bits (20), Expect = 0.17
Identities = 32/36 (88%)
Strand = Plus / Plus
Query: 29 ggcggatctggtggtggtggaagcggtggcggcggc 64
||||| |||||||||||||| |||| |||||||||
Sbjct: 544 ggcggttctggtggtggtggcggcggcggcggcggc 579
>gb|CV134800.1|CV134800 EST846009 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone PICCF66 5' end, mRNA sequence
Length = 885
Score = 40.1 bits (20), Expect = 0.17
Identities = 32/36 (88%)
Strand = Plus / Plus
Query: 29 ggcggatctggtggtggtggaagcggtggcggcggc 64
||||| |||||||||||||| |||| |||||||||
Sbjct: 524 ggcggttctggtggtggtggcggcggcggcggcggc 559
>gb|CV134949.1|CV134949 EST846158 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone PICCH52 5' end, mRNA sequence
Length = 856
Score = 40.1 bits (20), Expect = 0.17
Identities = 32/36 (88%)
Strand = Plus / Plus
Query: 29 ggcggatctggtggtggtggaagcggtggcggcggc 64
||||| |||||||||||||| |||| |||||||||
Sbjct: 562 ggcggttctggtggtggtggcggcggcggcggcggc 597
>gb|CV136509.1|CV136509 EST847718 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone RPIAC61 5' end, mRNA sequence
Length = 788
Score = 40.1 bits (20), Expect = 0.17
Identities = 32/36 (88%)
Strand = Plus / Plus
Query: 29 ggcggatctggtggtggtggaagcggtggcggcggc 64
||||| |||||||||||||| |||| |||||||||
Sbjct: 595 ggcggttctggtggtggtggcggcggcggcggcggc 630
>gb|CV136948.1|CV136948 EST848157 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone RPIAI31 5' end, mRNA sequence
Length = 975
Score = 40.1 bits (20), Expect = 0.17
Identities = 32/36 (88%)
Strand = Plus / Plus
Query: 29 ggcggatctggtggtggtggaagcggtggcggcggc 64
||||| |||||||||||||| |||| |||||||||
Sbjct: 549 ggcggttctggtggtggtggcggcggcggcggcggc 584
>gb|CV136987.1|CV136987 EST848196 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone RPIAI74 5' end, mRNA sequence
Length = 883
Score = 40.1 bits (20), Expect = 0.17
Identities = 32/36 (88%)
Strand = Plus / Plus
Query: 29 ggcggatctggtggtggtggaagcggtggcggcggc 64
||||| |||||||||||||| |||| |||||||||
Sbjct: 441 ggcggttctggtggtggtggcggcggcggcggcggc 476
>gb|CV137364.1|CV137364 EST848573 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone RPIAN51 5' end, mRNA sequence
Length = 621
Score = 40.1 bits (20), Expect = 0.17
Identities = 32/36 (88%)
Strand = Plus / Plus
Query: 29 ggcggatctggtggtggtggaagcggtggcggcggc 64
||||| |||||||||||||| |||| |||||||||
Sbjct: 531 ggcggttctggtggtggtggcggcggcggcggcggc 566
>gb|CV137417.1|CV137417 EST848626 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone RPIAO20 5' end, mRNA sequence
Length = 733
Score = 40.1 bits (20), Expect = 0.17
Identities = 32/36 (88%)
Strand = Plus / Plus
Query: 29 ggcggatctggtggtggtggaagcggtggcggcggc 64
||||| |||||||||||||| |||| |||||||||
Sbjct: 592 ggcggttctggtggtggtggcggcggcggcggcggc 627
>gb|CV138268.1|CV138268 EST849477 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone RPIB101 5' end, mRNA sequence
Length = 906
Score = 40.1 bits (20), Expect = 0.17
Identities = 32/36 (88%)
Strand = Plus / Plus
Query: 29 ggcggatctggtggtggtggaagcggtggcggcggc 64
||||| |||||||||||||| |||| |||||||||
Sbjct: 424 ggcggttctggtggtggtggcggcggcggcggcggc 459
>gb|CV138703.1|CV138703 EST849912 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone RPIB630 5' end, mRNA sequence
Length = 917
Score = 40.1 bits (20), Expect = 0.17
Identities = 32/36 (88%)
Strand = Plus / Plus
Query: 29 ggcggatctggtggtggtggaagcggtggcggcggc 64
||||| |||||||||||||| |||| |||||||||
Sbjct: 623 ggcggttctggtggtggtggcggcggcggcggcggc 658
>gb|CV138839.1|CV138839 EST850048 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone RPIB785 5' end, mRNA sequence
Length = 768
Score = 40.1 bits (20), Expect = 0.17
Identities = 32/36 (88%)
Strand = Plus / Plus
Query: 29 ggcggatctggtggtggtggaagcggtggcggcggc 64
||||| |||||||||||||| |||| |||||||||
Sbjct: 586 ggcggttctggtggtggtggcggcggcggcggcggc 621
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 116,855
Number of Sequences: 355925
Number of extensions: 116855
Number of successful extensions: 34484
Number of sequences better than 0.5: 187
Number of HSP's better than 0.5 without gapping: 187
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 33390
Number of HSP's gapped (non-prelim): 802
length of query: 989
length of database: 217,277,237
effective HSP length: 19
effective length of query: 970
effective length of database: 210,514,662
effective search space: 204199222140
effective search space used: 204199222140
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)