BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2405245.2.2
(616 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BQ696271.1|BQ696271 NXPV_037_D02_F NXPV (Nsf Xylem Plani... 50 1e-004
gb|CF390890.1|CF390890 RTDR3_2_G07.g1_A022 Loblolly pine ro... 50 1e-004
gb|CF391306.1|CF391306 RTDR3_1_G02.b1_A022 Loblolly pine ro... 50 1e-004
gb|CF391347.1|CF391347 RTDR3_1_F02.b1_A022 Loblolly pine ro... 50 1e-004
gb|CF402878.1|CF402878 RTWW1_23_F05.g1_A015 Well-watered lo... 50 1e-004
gb|CO200244.1|CO200244 GEO2_6_F09.b1_A032 Root gravitropism... 50 1e-004
gb|CO200327.1|CO200327 GEO2_6_F09.g1_A032 Root gravitropism... 50 1e-004
gb|CV138136.1|CV138136 EST849345 Sequencing ESTs from loblo... 50 1e-004
gb|DN454302.1|DN454302 EST950101 Sequencing ESTs from loblo... 50 1e-004
gb|DN458383.1|DN458383 EST954182 Sequencing ESTs from loblo... 50 1e-004
gb|DN458811.1|DN458811 EST954610 Sequencing ESTs from loblo... 50 1e-004
gb|DN459451.1|DN459451 EST955250 Sequencing ESTs from loblo... 50 1e-004
gb|DR024998.1|DR024998 STRS1_69_A06.b1_A034 Shoot tip pitch... 50 1e-004
gb|DR689916.1|DR689916 EST1080002 Normalized pine embryo li... 50 1e-004
gb|DT626827.1|DT626827 EST1159903 Sequencing ESTs from lobl... 50 1e-004
gb|AW698173.1|AW698173 NXNV_074_B10_F Nsf Xylem Normal wood... 44 0.007
gb|BG832474.1|BG832474 NXPV_073_C06_F NXPV (Nsf Xylem Plani... 44 0.007
gb|CV139033.1|CV139033 EST850242 Sequencing ESTs from loblo... 44 0.007
gb|AW010249.1|AW010249 ST03H01 Pine TriplEx shoot tip libra... 40 0.10
gb|BX249291.1|BX249291 BX249291 Pinus pinaster differenciat... 40 0.10
gb|BX249566.1|BX249566 BX249566 Pinus pinaster differenciat... 40 0.10
gb|BX254319.1|BX254319 BX254319 Pinus pinaster differenciat... 40 0.10
gb|AW758915.1|AW758915 NXNV_094_G09_F Nsf Xylem Normal wood... 40 0.10
gb|AW985251.1|AW985251 NXNV_132_D03_F Nsf Xylem Normal wood... 40 0.10
gb|BE431388.1|BE431388 NXNV_181_F06_F Nsf Xylem Normal wood... 40 0.10
gb|BF778582.1|BF778582 NXSI_088_D03_F NXSI (Nsf Xylem Side ... 40 0.10
gb|BQ654594.1|BQ654594 NXRV082_F11_F NXRV (Nsf Xylem Root w... 40 0.10
gb|BQ695622.1|BQ695622 NXPV_030_E10_F NXPV (Nsf Xylem Plani... 40 0.10
gb|BQ695717.1|BQ695717 NXPV_031_H11_F NXPV (Nsf Xylem Plani... 40 0.10
gb|BQ699235.1|BQ699235 NXRV121_B08_F NXRV (Nsf Xylem Root w... 40 0.10
gb|BQ701947.1|BQ701947 NXSI_122_E05_F NXSI (Nsf Xylem Side ... 40 0.10
gb|CD021347.1|CD021347 NXNV_142_B04_F Nsf Xylem Normal wood... 40 0.10
gb|CF664426.1|CF664426 RTCNT1_9_E05.g1_A029 Root control Pi... 40 0.10
gb|BX679132.1|BX679132 BX679132 RS Pinus pinaster cDNA clon... 40 0.10
gb|BX682793.1|BX682793 BX682793 Pinus pinaster differenciat... 40 0.10
gb|DN445630.1|DN445630 EST941429 Sequencing ESTs from loblo... 40 0.10
gb|DN446966.1|DN446966 EST942765 Sequencing ESTs from loblo... 40 0.10
gb|DR017543.1|DR017543 STRS1_17_A06.b1_A034 Shoot tip pitch... 40 0.10
gb|DR017618.1|DR017618 STRS1_17_A06.g1_A034 Shoot tip pitch... 40 0.10
gb|DR018115.1|DR018115 STRS1_20_C07.g1_A034 Shoot tip pitch... 40 0.10
gb|DR024764.1|DR024764 STRS1_67_G11.b1_A034 Shoot tip pitch... 40 0.10
gb|DR053888.1|DR053888 RTCA1_14_A01.b1_A029 Roots minus cal... 40 0.10
gb|DR053962.1|DR053962 RTCA1_14_A01.g1_A029 Roots minus cal... 40 0.10
gb|DR059162.1|DR059162 RTNIT1_16_C04.b1_A029 Roots minus ni... 40 0.10
gb|DR098956.1|DR098956 STRR1_49_C11.b1_A033 Stem Response R... 40 0.10
gb|DR099712.1|DR099712 STRR1_58_A03.b1_A033 Stem Response R... 40 0.10
gb|DR100066.1|DR100066 STRR1_61_H02.b1_A033 Stem Response R... 40 0.10
gb|DR109689.1|DR109689 RTS1_4_B09.b1_A029 Roots minus sulfu... 40 0.10
gb|DR109861.1|DR109861 RTS1_6_A06.b1_A029 Roots minus sulfu... 40 0.10
gb|DR180220.1|DR180220 RTMNUT1_27_E10.b1_A029 Roots minus m... 40 0.10
gb|DR682506.1|DR682506 EST1072581 Normalized pine embryo li... 40 0.10
>gb|BQ696271.1|BQ696271 NXPV_037_D02_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_037_D02 5' similar to Arabidopsis
thaliana sequence At5g15490 UDP-glucose
dehydrogenase-like protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 558
Score = 50.1 bits (25), Expect = 1e-004
Identities = 109/137 (79%)
Strand = Plus / Plus
Query: 44 gtgtgggacgcgtacgaggccaccaagggcgcccacggggtgtgcatcctgaccgagtgg 103
|||||||| || || |||||||||||| || |||||||| || || || || || |||
Sbjct: 195 gtgtgggatgcttatgaggccaccaagaatgctcacggggtctgtattcttactgaatgg 254
Query: 104 gacgagttcaagaccctggactaccagaagatcttcgacaacatgcagaagcccgccttc 163
|| |||||||||| |||||| ||| ||||||| || || ||| |||| |||||||||
Sbjct: 255 gatgagttcaagaacctggattacggtaagatctatgagaatatggagaaacccgccttc 314
Query: 164 gtcttcgacggccgcaa 180
|| ||||| || |||||
Sbjct: 315 gtattcgatggtcgcaa 331
>gb|CF390890.1|CF390890 RTDR3_2_G07.g1_A022 Loblolly pine roots recovering from drought DR3
Pinus taeda cDNA clone RTDR3_2_G07_A022 5', mRNA
sequence
Length = 791
Score = 50.1 bits (25), Expect = 1e-004
Identities = 109/137 (79%)
Strand = Plus / Plus
Query: 44 gtgtgggacgcgtacgaggccaccaagggcgcccacggggtgtgcatcctgaccgagtgg 103
|||||||| || || |||||||||||| || |||||||| || || || || || |||
Sbjct: 229 gtgtgggatgcttatgaggccaccaagaatgctcacggggtctgtattcttactgaatgg 288
Query: 104 gacgagttcaagaccctggactaccagaagatcttcgacaacatgcagaagcccgccttc 163
|| |||||||||| |||||| ||| ||||||| || || ||| |||| |||||||||
Sbjct: 289 gatgagttcaagaacctggattacggtaagatctatgagaatatggagaaacccgccttc 348
Query: 164 gtcttcgacggccgcaa 180
|| ||||| || |||||
Sbjct: 349 gtattcgatggtcgcaa 365
>gb|CF391306.1|CF391306 RTDR3_1_G02.b1_A022 Loblolly pine roots recovering from drought DR3
Pinus taeda cDNA clone RTDR3_1_G02_A022 3', mRNA
sequence
Length = 632
Score = 50.1 bits (25), Expect = 1e-004
Identities = 109/137 (79%)
Strand = Plus / Plus
Query: 44 gtgtgggacgcgtacgaggccaccaagggcgcccacggggtgtgcatcctgaccgagtgg 103
|||||||| || || |||||||||||| || |||||||| || || || || || |||
Sbjct: 148 gtgtgggatgcttatgaggccaccaagaatgctcacggggtctgtattcttactgaatgg 207
Query: 104 gacgagttcaagaccctggactaccagaagatcttcgacaacatgcagaagcccgccttc 163
|| |||||||||| |||||| ||| ||||||| || || ||| |||| |||||||||
Sbjct: 208 gatgagttcaagaacctggattacggtaagatctatgagaatatggagaaacccgccttc 267
Query: 164 gtcttcgacggccgcaa 180
|| ||||| || |||||
Sbjct: 268 gtattcgatggtcgcaa 284
>gb|CF391347.1|CF391347 RTDR3_1_F02.b1_A022 Loblolly pine roots recovering from drought DR3
Pinus taeda cDNA clone RTDR3_1_F02_A022 3', mRNA
sequence
Length = 676
Score = 50.1 bits (25), Expect = 1e-004
Identities = 109/137 (79%)
Strand = Plus / Plus
Query: 44 gtgtgggacgcgtacgaggccaccaagggcgcccacggggtgtgcatcctgaccgagtgg 103
|||||||| || || |||||||||||| || |||||||| || || || || || |||
Sbjct: 192 gtgtgggatgcttatgaggccaccaagaatgctcacggggtctgtattcttactgaatgg 251
Query: 104 gacgagttcaagaccctggactaccagaagatcttcgacaacatgcagaagcccgccttc 163
|| |||||||||| |||||| ||| ||||||| || || ||| |||| |||||||||
Sbjct: 252 gatgagttcaagaacctggattacggtaagatctatgagaatatggagaaacccgccttc 311
Query: 164 gtcttcgacggccgcaa 180
|| ||||| || |||||
Sbjct: 312 gtattcgatggtcgcaa 328
>gb|CF402878.1|CF402878 RTWW1_23_F05.g1_A015 Well-watered loblolly pine roots WW1 Pinus
taeda cDNA clone RTWW1_23_F05_A015 5', mRNA sequence
Length = 761
Score = 50.1 bits (25), Expect = 1e-004
Identities = 109/137 (79%)
Strand = Plus / Plus
Query: 44 gtgtgggacgcgtacgaggccaccaagggcgcccacggggtgtgcatcctgaccgagtgg 103
|||||||| || || |||||||||||| || |||||||| || || || || || |||
Sbjct: 619 gtgtgggatgcttatgaggccaccaagaatgctcacggggtctgtattcttactgaatgg 678
Query: 104 gacgagttcaagaccctggactaccagaagatcttcgacaacatgcagaagcccgccttc 163
|| |||||||||| |||||| ||| ||||||| || || ||| |||| |||||||||
Sbjct: 679 gatgagttcaagaacctggattacggtaagatctatgagaatatggagaaacccgccttc 738
Query: 164 gtcttcgacggccgcaa 180
|| ||||| || |||||
Sbjct: 739 gtattcgatggtcgcaa 755
>gb|CO200244.1|CO200244 GEO2_6_F09.b1_A032 Root gravitropism October 2003 test Pinus taeda
cDNA clone GEO2_6_F09_A032 3', mRNA sequence
Length = 870
Score = 50.1 bits (25), Expect = 1e-004
Identities = 109/137 (79%)
Strand = Plus / Plus
Query: 44 gtgtgggacgcgtacgaggccaccaagggcgcccacggggtgtgcatcctgaccgagtgg 103
|||||||| || || |||||||||||| || |||||||| || || || || || |||
Sbjct: 88 gtgtgggatgcttatgaggccaccaagaatgctcacggggtctgtattcttactgaatgg 147
Query: 104 gacgagttcaagaccctggactaccagaagatcttcgacaacatgcagaagcccgccttc 163
|| |||||||||| |||||| ||| ||||||| || || ||| |||| |||||||||
Sbjct: 148 gatgagttcaagaacctggattacggtaagatctatgagaatatggagaaacccgccttc 207
Query: 164 gtcttcgacggccgcaa 180
|| ||||| || |||||
Sbjct: 208 gtattcgatggtcgcaa 224
>gb|CO200327.1|CO200327 GEO2_6_F09.g1_A032 Root gravitropism October 2003 test Pinus taeda
cDNA clone GEO2_6_F09_A032 5', mRNA sequence
Length = 817
Score = 50.1 bits (25), Expect = 1e-004
Identities = 109/137 (79%)
Strand = Plus / Plus
Query: 44 gtgtgggacgcgtacgaggccaccaagggcgcccacggggtgtgcatcctgaccgagtgg 103
|||||||| || || |||||||||||| || |||||||| || || || || || |||
Sbjct: 202 gtgtgggatgcttatgaggccaccaagaatgctcacggggtctgtattcttactgaatgg 261
Query: 104 gacgagttcaagaccctggactaccagaagatcttcgacaacatgcagaagcccgccttc 163
|| |||||||||| |||||| ||| ||||||| || || ||| |||| |||||||||
Sbjct: 262 gatgagttcaagaacctggattacggtaagatctatgagaatatggagaaacccgccttc 321
Query: 164 gtcttcgacggccgcaa 180
|| ||||| || |||||
Sbjct: 322 gtattcgatggtcgcaa 338
>gb|CV138136.1|CV138136 EST849345 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone RPIAZ35 5' end, mRNA sequence
Length = 915
Score = 50.1 bits (25), Expect = 1e-004
Identities = 109/137 (79%)
Strand = Plus / Plus
Query: 44 gtgtgggacgcgtacgaggccaccaagggcgcccacggggtgtgcatcctgaccgagtgg 103
|||||||| || || |||||||||||| || |||||||| || || || || || |||
Sbjct: 484 gtgtgggatgcttatgaggccaccaagaatgctcacggggtctgtattcttactgaatgg 543
Query: 104 gacgagttcaagaccctggactaccagaagatcttcgacaacatgcagaagcccgccttc 163
|| |||||||||| |||||| ||| ||||||| || || ||| |||| |||||||||
Sbjct: 544 gatgagttcaagaacctggattacggtaagatctatgagaatatggagaaacccgccttc 603
Query: 164 gtcttcgacggccgcaa 180
|| ||||| || |||||
Sbjct: 604 gtattcgatggtcgcaa 620
>gb|DN454302.1|DN454302 EST950101 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone RPIG215 5' end, mRNA sequence
Length = 859
Score = 50.1 bits (25), Expect = 1e-004
Identities = 109/137 (79%)
Strand = Plus / Plus
Query: 44 gtgtgggacgcgtacgaggccaccaagggcgcccacggggtgtgcatcctgaccgagtgg 103
|||||||| || || |||||||||||| || |||||||| || || || || || |||
Sbjct: 623 gtgtgggatgcttatgaggccaccaagaatgctcacggggtctgtattcttactgaatgg 682
Query: 104 gacgagttcaagaccctggactaccagaagatcttcgacaacatgcagaagcccgccttc 163
|| |||||||||| |||||| ||| ||||||| || || ||| |||| |||||||||
Sbjct: 683 gatgagttcaagaacctggattacggtaagatctatgagaatatggagaaacccgccttc 742
Query: 164 gtcttcgacggccgcaa 180
|| ||||| || |||||
Sbjct: 743 gtattcgatggtcgcaa 759
>gb|DN458383.1|DN458383 EST954182 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone RPIHB32 5' end, mRNA sequence
Length = 943
Score = 50.1 bits (25), Expect = 1e-004
Identities = 109/137 (79%)
Strand = Plus / Plus
Query: 44 gtgtgggacgcgtacgaggccaccaagggcgcccacggggtgtgcatcctgaccgagtgg 103
|||||||| || || |||||||||||| || |||||||| || || || || || |||
Sbjct: 719 gtgtgggatgcttatgaggccaccaagaatgctcacggggtctgtattcttactgaatgg 778
Query: 104 gacgagttcaagaccctggactaccagaagatcttcgacaacatgcagaagcccgccttc 163
|| |||||||||| |||||| ||| ||||||| || || ||| |||| |||||||||
Sbjct: 779 gatgagttcaagaacctggattacggtaagatctatgagaatatggagaaacccgccttc 838
Query: 164 gtcttcgacggccgcaa 180
|| ||||| || |||||
Sbjct: 839 gtattcgatggtcgcaa 855
>gb|DN458811.1|DN458811 EST954610 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone RPIHG07 5' end, mRNA sequence
Length = 949
Score = 50.1 bits (25), Expect = 1e-004
Identities = 109/137 (79%)
Strand = Plus / Plus
Query: 44 gtgtgggacgcgtacgaggccaccaagggcgcccacggggtgtgcatcctgaccgagtgg 103
|||||||| || || |||||||||||| || |||||||| || || || || || |||
Sbjct: 709 gtgtgggatgcttatgaggccaccaagaatgctcacggggtctgtattcttactgaatgg 768
Query: 104 gacgagttcaagaccctggactaccagaagatcttcgacaacatgcagaagcccgccttc 163
|| |||||||||| |||||| ||| ||||||| || || ||| |||| |||||||||
Sbjct: 769 gatgagttcaagaacctggattacggtaagatctatgagaatatggagaaacccgccttc 828
Query: 164 gtcttcgacggccgcaa 180
|| ||||| || |||||
Sbjct: 829 gtattcgatggtcgcaa 845
>gb|DN459451.1|DN459451 EST955250 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone RPIHN31 5' end, mRNA sequence
Length = 922
Score = 50.1 bits (25), Expect = 1e-004
Identities = 109/137 (79%)
Strand = Plus / Plus
Query: 44 gtgtgggacgcgtacgaggccaccaagggcgcccacggggtgtgcatcctgaccgagtgg 103
|||||||| || || |||||||||||| || |||||||| || || || || || |||
Sbjct: 699 gtgtgggatgcttatgaggccaccaagaatgctcacggggtctgtattcttactgaatgg 758
Query: 104 gacgagttcaagaccctggactaccagaagatcttcgacaacatgcagaagcccgccttc 163
|| |||||||||| |||||| ||| ||||||| || || ||| |||| |||||||||
Sbjct: 759 gatgagttcaagaacctggattacggtaagatctatgagaatatggagaaacccgccttc 818
Query: 164 gtcttcgacggccgcaa 180
|| ||||| || |||||
Sbjct: 819 gtattcgatggtcgcaa 835
>gb|DR024998.1|DR024998 STRS1_69_A06.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_69_A06_A034 3', mRNA sequence
Length = 841
Score = 50.1 bits (25), Expect = 1e-004
Identities = 109/137 (79%)
Strand = Plus / Plus
Query: 44 gtgtgggacgcgtacgaggccaccaagggcgcccacggggtgtgcatcctgaccgagtgg 103
|||||||| || || |||||||||||| || |||||||| || || || || || |||
Sbjct: 189 gtgtgggatgcttatgaggccaccaagaatgctcacggggtctgtattcttactgaatgg 248
Query: 104 gacgagttcaagaccctggactaccagaagatcttcgacaacatgcagaagcccgccttc 163
|| |||||||||| |||||| ||| ||||||| || || ||| |||| |||||||||
Sbjct: 249 gatgagttcaagaacctggattacggtaagatctatgagaatatggagaaacccgccttc 308
Query: 164 gtcttcgacggccgcaa 180
|| ||||| || |||||
Sbjct: 309 gtattcgatggtcgcaa 325
>gb|DR689916.1|DR689916 EST1080002 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWACO92 3' end, mRNA sequence
Length = 841
Score = 50.1 bits (25), Expect = 1e-004
Identities = 109/137 (79%)
Strand = Plus / Plus
Query: 44 gtgtgggacgcgtacgaggccaccaagggcgcccacggggtgtgcatcctgaccgagtgg 103
|||||||| || || |||||||||||| || |||||||| || || || || || |||
Sbjct: 395 gtgtgggatgcttatgaggccaccaagaatgctcacggggtctgtattcttactgaatgg 454
Query: 104 gacgagttcaagaccctggactaccagaagatcttcgacaacatgcagaagcccgccttc 163
|| |||||||||| |||||| ||| ||||||| || || ||| |||| |||||||||
Sbjct: 455 gatgagttcaagaacctggattacggtaagatctatgagaatatggagaaacccgccttc 514
Query: 164 gtcttcgacggccgcaa 180
|| ||||| || |||||
Sbjct: 515 gtattcgatggtcgcaa 531
>gb|DT626827.1|DT626827 EST1159903 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone PIMAR78 5' end, mRNA sequence
Length = 865
Score = 50.1 bits (25), Expect = 1e-004
Identities = 109/137 (79%)
Strand = Plus / Plus
Query: 44 gtgtgggacgcgtacgaggccaccaagggcgcccacggggtgtgcatcctgaccgagtgg 103
|||||||| || || |||||||||||| || |||||||| || || || || || |||
Sbjct: 709 gtgtgggatgcttatgaggccaccaagaatgctcacggggtctgtattcttactgaatgg 768
Query: 104 gacgagttcaagaccctggactaccagaagatcttcgacaacatgcagaagcccgccttc 163
|| |||||||||| |||||| ||| ||||||| || || ||| |||| |||||||||
Sbjct: 769 gatgagttcaagaacctggattacggtaagatctatgagaatatggagaaacccgccttc 828
Query: 164 gtcttcgacggccgcaa 180
|| ||||| || |||||
Sbjct: 829 gtattcgatggtcgcaa 845
>gb|AW698173.1|AW698173 NXNV_074_B10_F Nsf Xylem Normal wood Vertical Pinus taeda cDNA
clone NXNV_074_B10 5' similar to Arabidopsis thaliana
sequence At5g15490 UDP-glucose dehydrogenase-like
protein see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 340
Score = 44.1 bits (22), Expect = 0.007
Identities = 97/122 (79%)
Strand = Plus / Plus
Query: 59 gaggccaccaagggcgcccacggggtgtgcatcctgaccgagtgggacgagttcaagacc 118
|||||||||||| || |||||||| || || || || || ||||| |||||||||| |
Sbjct: 6 gaggccaccaagaatgctcacggggtctgtattcttactgaatgggatgagttcaagaac 65
Query: 119 ctggactaccagaagatcttcgacaacatgcagaagcccgccttcgtcttcgacggccgc 178
||||| ||| ||||||| || || ||| |||| ||||||||||| ||||| || |||
Sbjct: 66 ctggattacggtaagatctatgagaatatggagaaacccgccttcgtattcgatggtcgc 125
Query: 179 aa 180
||
Sbjct: 126 aa 127
>gb|BG832474.1|BG832474 NXPV_073_C06_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_073_C06 5' similar to Arabidopsis
thaliana sequence At5g15490 UDP-glucose
dehydrogenase-like protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 468
Score = 44.1 bits (22), Expect = 0.007
Identities = 108/137 (78%)
Strand = Plus / Plus
Query: 44 gtgtgggacgcgtacgaggccaccaagggcgcccacggggtgtgcatcctgaccgagtgg 103
|||||||| || || ||| |||||||| || |||||||| || || || || || |||
Sbjct: 225 gtgtgggatgcttatgagnccaccaagaatgctcacggggtctgtattcttactgaatgg 284
Query: 104 gacgagttcaagaccctggactaccagaagatcttcgacaacatgcagaagcccgccttc 163
|| |||||||||| |||||| ||| ||||||| || || ||| |||| |||||||||
Sbjct: 285 gatgagttcaagaacctggattacggtaagatctatgagaatatggagaaacccgccttc 344
Query: 164 gtcttcgacggccgcaa 180
|| ||||| || |||||
Sbjct: 345 gtattcgatggtcgcaa 361
>gb|CV139033.1|CV139033 EST850242 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone RPIBA29 5' end, mRNA sequence
Length = 904
Score = 44.1 bits (22), Expect = 0.007
Identities = 110/138 (79%), Gaps = 1/138 (0%)
Strand = Plus / Plus
Query: 44 gtgtgggacgcgtacgaggccaccaagggcgcccacggggtgtgcatcctgaccgagtgg 103
|||||||| || || |||||||||||| || |||||||| || || || || || |||
Sbjct: 748 gtgtgggatgcttatgaggccaccaagaatgctcacggggtctgtattcttactgaatgg 807
Query: 104 gacgagttcaagaccctggactaccag-aagatcttcgacaacatgcagaagcccgcctt 162
|| |||||||||| |||||| ||| | ||||||| || || ||| |||| ||||||||
Sbjct: 808 gatgagttcaagaacctggattacgggtaagatctatgagaatatggagaaacccgcctt 867
Query: 163 cgtcttcgacggccgcaa 180
||| ||||| || |||||
Sbjct: 868 cgtattcgatggtcgcaa 885
>gb|AW010249.1|AW010249 ST03H01 Pine TriplEx shoot tip library Pinus taeda cDNA clone
ST03H01, mRNA sequence
Length = 650
Score = 40.1 bits (20), Expect = 0.10
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 98 gagtgggacgagttcaagaccctggact 125
|||||||| ||||||||||| |||||||
Sbjct: 53 gagtgggatgagttcaagactctggact 80
>gb|BX249291.1|BX249291 BX249291 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP022C10, mRNA sequence
Length = 673
Score = 40.1 bits (20), Expect = 0.10
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 98 gagtgggacgagttcaagaccctggact 125
|||||||| ||||||||||| |||||||
Sbjct: 533 gagtgggatgagttcaagactctggact 560
>gb|BX249566.1|BX249566 BX249566 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP025E08, mRNA sequence
Length = 601
Score = 40.1 bits (20), Expect = 0.10
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 140 gacaacatgcagaagcccgc 159
||||||||||||||||||||
Sbjct: 402 gacaacatgcagaagcccgc 383
>gb|BX254319.1|BX254319 BX254319 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP096G05, mRNA sequence
Length = 648
Score = 40.1 bits (20), Expect = 0.10
Identities = 65/80 (81%)
Strand = Plus / Plus
Query: 101 tgggacgagttcaagaccctggactaccagaagatcttcgacaacatgcagaagcccgcc 160
||||| |||||||||| |||||| ||| ||||||| || || ||| |||| ||||||
Sbjct: 6 tgggatgagttcaagaacctggattacggtaagatctatgagaatatggagaaacccgcc 65
Query: 161 ttcgtcttcgacggccgcaa 180
||||| ||||| || |||||
Sbjct: 66 ttcgtattcgatggtcgcaa 85
>gb|AW758915.1|AW758915 NXNV_094_G09_F Nsf Xylem Normal wood Vertical Pinus taeda cDNA
clone NXNV_094_G09 5' similar to Arabidopsis thaliana
sequence At5g39320 UDP-glucose dehydrogenase-like
protein see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 386
Score = 40.1 bits (20), Expect = 0.10
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 140 gacaacatgcagaagcccgc 159
||||||||||||||||||||
Sbjct: 53 gacaacatgcagaagcccgc 72
>gb|AW985251.1|AW985251 NXNV_132_D03_F Nsf Xylem Normal wood Vertical Pinus taeda cDNA
clone NXNV_132_D03 5' similar to Arabidopsis thaliana
sequence At3g29360 UDP-glucose dehydrogenase, putative
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 330
Score = 40.1 bits (20), Expect = 0.10
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 98 gagtgggacgagttcaagaccctggact 125
|||||||| ||||||||||| |||||||
Sbjct: 195 gagtgggatgagttcaagactctggact 222
>gb|BE431388.1|BE431388 NXNV_181_F06_F Nsf Xylem Normal wood Vertical Pinus taeda cDNA
clone NXNV_181_F06 5' similar to Arabidopsis thaliana
sequence At3g29360 UDP-glucose dehydrogenase, putative
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 476
Score = 40.1 bits (20), Expect = 0.10
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 98 gagtgggacgagttcaagaccctggact 125
|||||||| ||||||||||| |||||||
Sbjct: 195 gagtgggatgagttcaagactctggact 222
>gb|BF778582.1|BF778582 NXSI_088_D03_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_088_D03 5' similar to Arabidopsis thaliana
sequence At5g39320 UDP-glucose dehydrogenase-like
protein see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 439
Score = 40.1 bits (20), Expect = 0.10
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 98 gagtgggacgagttcaagaccctggact 125
|||||||| ||||||||||| |||||||
Sbjct: 18 gagtgggatgagttcaagactctggact 45
>gb|BQ654594.1|BQ654594 NXRV082_F11_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV082_F11 5' similar to Arabidopsis thaliana
sequence At5g39320 UDP-glucose dehydrogenase-like
protein see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 632
Score = 40.1 bits (20), Expect = 0.10
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 98 gagtgggacgagttcaagaccctggact 125
|||||||| ||||||||||| |||||||
Sbjct: 237 gagtgggatgagttcaagactctggact 264
>gb|BQ695622.1|BQ695622 NXPV_030_E10_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_030_E10 5' similar to Arabidopsis
thaliana sequence At3g29360 UDP-glucose dehydrogenase,
putative see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 365
Score = 40.1 bits (20), Expect = 0.10
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 98 gagtgggacgagttcaagaccctggact 125
|||||||| ||||||||||| |||||||
Sbjct: 47 gagtgggatgagttcaagactctggact 74
>gb|BQ695717.1|BQ695717 NXPV_031_H11_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_031_H11 5' similar to Arabidopsis
thaliana sequence At3g29360 UDP-glucose dehydrogenase,
putative see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 528
Score = 40.1 bits (20), Expect = 0.10
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 98 gagtgggacgagttcaagaccctggact 125
|||||||| ||||||||||| |||||||
Sbjct: 352 gagtgggatgagttcaagactctggact 379
>gb|BQ699235.1|BQ699235 NXRV121_B08_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV121_B08 5' similar to Arabidopsis thaliana
sequence At5g39320 UDP-glucose dehydrogenase-like
protein see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 550
Score = 40.1 bits (20), Expect = 0.10
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 98 gagtgggacgagttcaagaccctggact 125
|||||||| ||||||||||| |||||||
Sbjct: 307 gagtgggatgagttcaagactctggact 334
>gb|BQ701947.1|BQ701947 NXSI_122_E05_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_122_E05 5' similar to Arabidopsis thaliana
sequence At3g29360 UDP-glucose dehydrogenase, putative
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 404
Score = 40.1 bits (20), Expect = 0.10
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 98 gagtgggacgagttcaagaccctggact 125
|||||||| ||||||||||| |||||||
Sbjct: 165 gagtgggatgagttcaagactctggact 192
>gb|CD021347.1|CD021347 NXNV_142_B04_F Nsf Xylem Normal wood Vertical Pinus taeda cDNA
clone NXNV_142_B04 5' similar to Arabidopsis thaliana
sequence At5g39320 UDP-glucose dehydrogenase-like
protein see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 157
Score = 40.1 bits (20), Expect = 0.10
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 140 gacaacatgcagaagcccgc 159
||||||||||||||||||||
Sbjct: 53 gacaacatgcagaagcccgc 72
>gb|CF664426.1|CF664426 RTCNT1_9_E05.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_9_E05_A029 5', mRNA sequence
Length = 536
Score = 40.1 bits (20), Expect = 0.10
Identities = 65/80 (81%)
Strand = Plus / Plus
Query: 44 gtgtgggacgcgtacgaggccaccaagggcgcccacggggtgtgcatcctgaccgagtgg 103
|||||||| || || |||||||||||| || |||||||| || || || || || |||
Sbjct: 435 gtgtgggatgcttatgaggccaccaagaatgctcacggggtctgtattcttactgaatgg 494
Query: 104 gacgagttcaagaccctgga 123
|| |||||||||| ||||||
Sbjct: 495 gatgagttcaagaacctgga 514
>gb|BX679132.1|BX679132 BX679132 RS Pinus pinaster cDNA clone RS20C3, mRNA sequence
Length = 609
Score = 40.1 bits (20), Expect = 0.10
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 98 gagtgggacgagttcaagaccctggact 125
|||||||| ||||||||||| |||||||
Sbjct: 520 gagtgggatgagttcaagactctggact 547
>gb|BX682793.1|BX682793 BX682793 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone 121H04 similar to UDP-glucose 6-dehydrogenase
(EC 1.1.1.22), mRNA sequence
Length = 423
Score = 40.1 bits (20), Expect = 0.10
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 98 gagtgggacgagttcaagaccctggact 125
|||||||| ||||||||||| |||||||
Sbjct: 305 gagtgggatgagttcaagactctggact 332
>gb|DN445630.1|DN445630 EST941429 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone PICV343 5' end, mRNA sequence
Length = 825
Score = 40.1 bits (20), Expect = 0.10
Identities = 65/80 (81%)
Strand = Plus / Plus
Query: 44 gtgtgggacgcgtacgaggccaccaagggcgcccacggggtgtgcatcctgaccgagtgg 103
|||||||| || || |||||||||||| || |||||||| || || || || || |||
Sbjct: 709 gtgtgggatgcttatgaggccaccaagaatgctcacggggtctgtattcttactgaatgg 768
Query: 104 gacgagttcaagaccctgga 123
|| |||||||||| ||||||
Sbjct: 769 gatgagttcaagaacctgga 788
>gb|DN446966.1|DN446966 EST942765 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone RPIBN64 5' end, mRNA sequence
Length = 860
Score = 40.1 bits (20), Expect = 0.10
Identities = 65/80 (81%)
Strand = Plus / Plus
Query: 44 gtgtgggacgcgtacgaggccaccaagggcgcccacggggtgtgcatcctgaccgagtgg 103
|||||||| || || |||||||||||| || |||||||| || || || || || |||
Sbjct: 757 gtgtgggatgcttatgaggccaccaagaatgctcacggggtctgtattcttactgaatgg 816
Query: 104 gacgagttcaagaccctgga 123
|| |||||||||| ||||||
Sbjct: 817 gatgagttcaagaacctgga 836
>gb|DR017543.1|DR017543 STRS1_17_A06.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_17_A06_A034 3', mRNA sequence
Length = 673
Score = 40.1 bits (20), Expect = 0.10
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 98 gagtgggacgagttcaagaccctggact 125
|||||||| ||||||||||| |||||||
Sbjct: 163 gagtgggatgagttcaagactctggact 190
>gb|DR017618.1|DR017618 STRS1_17_A06.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_17_A06_A034 5', mRNA sequence
Length = 674
Score = 40.1 bits (20), Expect = 0.10
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 98 gagtgggacgagttcaagaccctggact 125
|||||||| ||||||||||| |||||||
Sbjct: 270 gagtgggatgagttcaagactctggact 297
>gb|DR018115.1|DR018115 STRS1_20_C07.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_20_C07_A034 5', mRNA sequence
Length = 822
Score = 40.1 bits (20), Expect = 0.10
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 98 gagtgggacgagttcaagaccctggact 125
|||||||| ||||||||||| |||||||
Sbjct: 225 gagtgggatgagttcaagactctggact 252
>gb|DR024764.1|DR024764 STRS1_67_G11.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_67_G11_A034 3', mRNA sequence
Length = 766
Score = 40.1 bits (20), Expect = 0.10
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 98 gagtgggacgagttcaagaccctggact 125
|||||||| ||||||||||| |||||||
Sbjct: 77 gagtgggatgagttcaagactctggact 104
>gb|DR053888.1|DR053888 RTCA1_14_A01.b1_A029 Roots minus calcium Pinus taeda cDNA clone
RTCA1_14_A01_A029 3', mRNA sequence
Length = 858
Score = 40.1 bits (20), Expect = 0.10
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 98 gagtgggacgagttcaagaccctggact 125
|||||||| ||||||||||| |||||||
Sbjct: 245 gagtgggatgagttcaagactctggact 272
>gb|DR053962.1|DR053962 RTCA1_14_A01.g1_A029 Roots minus calcium Pinus taeda cDNA clone
RTCA1_14_A01_A029 5', mRNA sequence
Length = 695
Score = 40.1 bits (20), Expect = 0.10
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 98 gagtgggacgagttcaagaccctggact 125
|||||||| ||||||||||| |||||||
Sbjct: 302 gagtgggatgagttcaagactctggact 329
>gb|DR059162.1|DR059162 RTNIT1_16_C04.b1_A029 Roots minus nitrogen Pinus taeda cDNA clone
RTNIT1_16_C04_A029 3', mRNA sequence
Length = 624
Score = 40.1 bits (20), Expect = 0.10
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 98 gagtgggacgagttcaagaccctggact 125
|||||||| ||||||||||| |||||||
Sbjct: 27 gagtgggatgagttcaagactctggact 54
>gb|DR098956.1|DR098956 STRR1_49_C11.b1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_49_C11_A033 3', mRNA sequence
Length = 717
Score = 40.1 bits (20), Expect = 0.10
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 140 gacaacatgcagaagcccgc 159
||||||||||||||||||||
Sbjct: 337 gacaacatgcagaagcccgc 318
>gb|DR099712.1|DR099712 STRR1_58_A03.b1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_58_A03_A033 3', mRNA sequence
Length = 752
Score = 40.1 bits (20), Expect = 0.10
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 98 gagtgggacgagttcaagaccctggact 125
|||||||| ||||||||||| |||||||
Sbjct: 71 gagtgggatgagttcaagactctggact 98
>gb|DR100066.1|DR100066 STRR1_61_H02.b1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_61_H02_A033 3', mRNA sequence
Length = 802
Score = 40.1 bits (20), Expect = 0.10
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 98 gagtgggacgagttcaagaccctggact 125
|||||||| ||||||||||| |||||||
Sbjct: 185 gagtgggatgagttcaagactctggact 212
>gb|DR109689.1|DR109689 RTS1_4_B09.b1_A029 Roots minus sulfur Pinus taeda cDNA clone
RTS1_4_B09_A029 3', mRNA sequence
Length = 737
Score = 40.1 bits (20), Expect = 0.10
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 98 gagtgggacgagttcaagaccctggact 125
|||||||| ||||||||||| |||||||
Sbjct: 134 gagtgggatgagttcaagactctggact 161
>gb|DR109861.1|DR109861 RTS1_6_A06.b1_A029 Roots minus sulfur Pinus taeda cDNA clone
RTS1_6_A06_A029 3', mRNA sequence
Length = 421
Score = 40.1 bits (20), Expect = 0.10
Identities = 65/80 (81%)
Strand = Plus / Plus
Query: 101 tgggacgagttcaagaccctggactaccagaagatcttcgacaacatgcagaagcccgcc 160
||||| |||||||||| |||||| ||| ||||||| || || ||| |||| ||||||
Sbjct: 8 tgggatgagttcaagaacctggattacggtaagatctatgagaatatggagaaacccgcc 67
Query: 161 ttcgtcttcgacggccgcaa 180
||||| ||||| || |||||
Sbjct: 68 ttcgtattcgatggtcgcaa 87
>gb|DR180220.1|DR180220 RTMNUT1_27_E10.b1_A029 Roots minus micronutrients Pinus taeda cDNA
clone RTMNUT1_27_E10_A029 3', mRNA sequence
Length = 813
Score = 40.1 bits (20), Expect = 0.10
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 98 gagtgggacgagttcaagaccctggact 125
|||||||| ||||||||||| |||||||
Sbjct: 132 gagtgggatgagttcaagactctggact 159
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 56,315
Number of Sequences: 355925
Number of extensions: 56315
Number of successful extensions: 15629
Number of sequences better than 0.5: 51
Number of HSP's better than 0.5 without gapping: 51
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 15577
Number of HSP's gapped (non-prelim): 51
length of query: 616
length of database: 217,277,237
effective HSP length: 19
effective length of query: 597
effective length of database: 210,514,662
effective search space: 125677253214
effective search space used: 125677253214
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)