BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2405118.2.1
(1669 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CN785837.1|CN785837 EST784528 Sequencing ESTs from loblo... 46 0.005
gb|DN451977.1|DN451977 EST947776 Sequencing ESTs from loblo... 46 0.005
gb|DN460355.1|DN460355 EST956154 Sequencing ESTs from loblo... 46 0.005
gb|DN462023.1|DN462023 EST957822 Sequencing ESTs from loblo... 46 0.005
gb|DT626847.1|DT626847 EST1159923 Sequencing ESTs from lobl... 46 0.005
gb|CX650661.1|CX650661 COLD1_47_F01.b1_A029 Root cold Pinus... 42 0.072
gb|BM158723.1|BM158723 NXLV_039_D03_F NXLV (Nsf Xylem Late ... 40 0.29
gb|CF664280.1|CF664280 RTCNT1_8_F09.g1_A029 Root control Pi... 40 0.29
gb|CN785454.1|CN785454 EST784145 Sequencing ESTs from loblo... 40 0.29
gb|DR742708.1|DR742708 RTCU1_6_B04.g2_A029 Roots plus added... 40 0.29
gb|U62394.1|PRU62394 Pinus radiata cinnamyl alcohol dehydro... 40 0.29
gb|AF060491.1|AF060491 Pinus radiata cinnamyl alcohol dehyd... 40 0.29
dbj|BD224283.1| Materials and methods for the modification ... 40 0.29
dbj|BD224347.1| Materials and methods for the modification ... 40 0.29
dbj|BD224371.1| Materials and methods for the modification ... 40 0.29
dbj|BD224569.1| Materials and methods for the modification ... 40 0.29
dbj|BD273009.1| Materials and methods for the modification ... 40 0.29
>gb|CN785837.1|CN785837 EST784528 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone PIAB416 5' end, mRNA sequence
Length = 860
Score = 46.1 bits (23), Expect = 0.005
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 455 tccgccgccgccgcctccgcctc 477
|||||||||||||||||||||||
Sbjct: 459 tccgccgccgccgcctccgcctc 437
>gb|DN451977.1|DN451977 EST947776 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone RPIF992 5' end, mRNA sequence
Length = 827
Score = 46.1 bits (23), Expect = 0.005
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 455 tccgccgccgccgcctccgcctc 477
|||||||||||||||||||||||
Sbjct: 459 tccgccgccgccgcctccgcctc 437
>gb|DN460355.1|DN460355 EST956154 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone RPIHX56 5' end, mRNA sequence
Length = 626
Score = 46.1 bits (23), Expect = 0.005
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 455 tccgccgccgccgcctccgcctc 477
|||||||||||||||||||||||
Sbjct: 269 tccgccgccgccgcctccgcctc 247
>gb|DN462023.1|DN462023 EST957822 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone RPIIH44 5' end, mRNA sequence
Length = 942
Score = 46.1 bits (23), Expect = 0.005
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 455 tccgccgccgccgcctccgcctc 477
|||||||||||||||||||||||
Sbjct: 459 tccgccgccgccgcctccgcctc 437
>gb|DT626847.1|DT626847 EST1159923 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone PIMAS06 5' end, mRNA sequence
Length = 968
Score = 46.1 bits (23), Expect = 0.005
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 455 tccgccgccgccgcctccgcctc 477
|||||||||||||||||||||||
Sbjct: 459 tccgccgccgccgcctccgcctc 437
>gb|CX650661.1|CX650661 COLD1_47_F01.b1_A029 Root cold Pinus taeda cDNA clone
COLD1_47_F01_A029 3', mRNA sequence
Length = 792
Score = 42.1 bits (21), Expect = 0.072
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 342 caactagtaaaggaagcagaa 362
|||||||||||||||||||||
Sbjct: 504 caactagtaaaggaagcagaa 484
>gb|BM158723.1|BM158723 NXLV_039_D03_F NXLV (Nsf Xylem Late wood Vertical) Pinus taeda cDNA
clone NXLV_039_D03 5' similar to Arabidopsis thaliana
sequence At3g19450 putative cinnamyl alcohol
dehydrogenase 2 see
http://mips.gsf.de/proj/thal/db/index.html, mRNA sequence
Length = 484
Score = 40.1 bits (20), Expect = 0.29
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 1429 caccacatcttcagggcctgtgtt 1452
||||||||||||||||| ||||||
Sbjct: 107 caccacatcttcagggcttgtgtt 84
>gb|CF664280.1|CF664280 RTCNT1_8_F09.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_8_F09_A029 5', mRNA sequence
Length = 434
Score = 40.1 bits (20), Expect = 0.29
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 456 ccgccgccgccgcctccgcc 475
||||||||||||||||||||
Sbjct: 119 ccgccgccgccgcctccgcc 138
>gb|CN785454.1|CN785454 EST784145 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone PIAAZ18 5' end, mRNA sequence
Length = 946
Score = 40.1 bits (20), Expect = 0.29
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 458 gccgccgccgcctccgcctc 477
||||||||||||||||||||
Sbjct: 290 gccgccgccgcctccgcctc 309
>gb|DR742708.1|DR742708 RTCU1_6_B04.g2_A029 Roots plus added copper Pinus taeda cDNA clone
RTCU1_6_B04_A029 5', mRNA sequence
Length = 697
Score = 40.1 bits (20), Expect = 0.29
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 456 ccgccgccgccgcctccgcc 475
||||||||||||||||||||
Sbjct: 246 ccgccgccgccgcctccgcc 265
>gb|U62394.1|PRU62394 Pinus radiata cinnamyl alcohol dehydrogenase (CAD) mRNA, complete
cds
Length = 1397
Score = 40.1 bits (20), Expect = 0.29
Identities = 56/68 (82%)
Strand = Plus / Minus
Query: 905 gacgagctgatcaccgtcacgtggtggcccatggccttggctaccttcacgcccatgtgg 964
||||| ||||| |||||||||||| | || | ||| ||||| | ||| || ||||||||
Sbjct: 720 gacgaactgataaccgtcacgtggagtccaaaggctttggcaatcttgacacccatgtgc 661
Query: 965 cccacgcc 972
||||||||
Sbjct: 660 cccacgcc 653
>gb|AF060491.1|AF060491 Pinus radiata cinnamyl alcohol dehydrogenase (CAD) gene, complete cds
Length = 3540
Score = 40.1 bits (20), Expect = 0.29
Identities = 56/68 (82%)
Strand = Plus / Minus
Query: 905 gacgagctgatcaccgtcacgtggtggcccatggccttggctaccttcacgcccatgtgg 964
||||| ||||| |||||||||||| | || | ||| ||||| | ||| || ||||||||
Sbjct: 1338 gacgaactgataaccgtcacgtggagtccaaaggctttggcaatcttgacacccatgtgc 1279
Query: 965 cccacgcc 972
||||||||
Sbjct: 1278 cccacgcc 1271
>dbj|BD224283.1| Materials and methods for the modification of plant lignin content
Length = 1454
Score = 40.1 bits (20), Expect = 0.29
Identities = 56/68 (82%)
Strand = Plus / Minus
Query: 905 gacgagctgatcaccgtcacgtggtggcccatggccttggctaccttcacgcccatgtgg 964
||||| ||||| |||||||||||| | || | ||| ||||| | ||| || ||||||||
Sbjct: 716 gacgaactgataaccgtcacgtggagtccaaaggctttggcaatcttgacacccatgtgc 657
Query: 965 cccacgcc 972
||||||||
Sbjct: 656 cccacgcc 649
>dbj|BD224347.1| Materials and methods for the modification of plant lignin content
Length = 1474
Score = 40.1 bits (20), Expect = 0.29
Identities = 56/68 (82%)
Strand = Plus / Minus
Query: 905 gacgagctgatcaccgtcacgtggtggcccatggccttggctaccttcacgcccatgtgg 964
||||| ||||| |||||||||||| | || | ||| ||||| | ||| || ||||||||
Sbjct: 736 gacgaactgataaccgtcacgtggagtccaaaggctttggcaatcttgacacccatgtgc 677
Query: 965 cccacgcc 972
||||||||
Sbjct: 676 cccacgcc 669
>dbj|BD224371.1| Materials and methods for the modification of plant lignin content
Length = 1460
Score = 40.1 bits (20), Expect = 0.29
Identities = 56/68 (82%)
Strand = Plus / Minus
Query: 905 gacgagctgatcaccgtcacgtggtggcccatggccttggctaccttcacgcccatgtgg 964
||||| ||||| |||||||||||| | || | ||| ||||| | ||| || ||||||||
Sbjct: 722 gacgaactgataaccgtcacgtggagtccaaaggctttggcaatcttgacacccatgtgc 663
Query: 965 cccacgcc 972
||||||||
Sbjct: 662 cccacgcc 655
>dbj|BD224569.1| Materials and methods for the modification of plant lignin content
Length = 1474
Score = 40.1 bits (20), Expect = 0.29
Identities = 56/68 (82%)
Strand = Plus / Minus
Query: 905 gacgagctgatcaccgtcacgtggtggcccatggccttggctaccttcacgcccatgtgg 964
||||| ||||| |||||||||||| | || | ||| ||||| | ||| || ||||||||
Sbjct: 736 gacgaactgataaccgtcacgtggagtccaaaggctttggcaatcttgacacccatgtgc 677
Query: 965 cccacgcc 972
||||||||
Sbjct: 676 cccacgcc 669
>dbj|BD273009.1| Materials and methods for the modification of isoprenoid content,
compostition and metabolism
Length = 1474
Score = 40.1 bits (20), Expect = 0.29
Identities = 56/68 (82%)
Strand = Plus / Minus
Query: 905 gacgagctgatcaccgtcacgtggtggcccatggccttggctaccttcacgcccatgtgg 964
||||| ||||| |||||||||||| | || | ||| ||||| | ||| || ||||||||
Sbjct: 736 gacgaactgataaccgtcacgtggagtccaaaggctttggcaatcttgacacccatgtgc 677
Query: 965 cccacgcc 972
||||||||
Sbjct: 676 cccacgcc 669
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 154,495
Number of Sequences: 355925
Number of extensions: 154495
Number of successful extensions: 41995
Number of sequences better than 0.5: 17
Number of HSP's better than 0.5 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 41886
Number of HSP's gapped (non-prelim): 84
length of query: 1669
length of database: 217,277,237
effective HSP length: 20
effective length of query: 1649
effective length of database: 210,158,737
effective search space: 346551757313
effective search space used: 346551757313
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)