BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2404820.2.1
(830 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CF397389.1|CF397389 RTDS3_3_G03.b2_A022 Drought-stressed... 54 9e-006
gb|CF397463.1|CF397463 RTDS3_3_G03.g1_A022 Drought-stressed... 54 9e-006
gb|CO167598.1|CO167598 FLD1_70_A08.b1_A029 Root flooded Pin... 54 9e-006
gb|CO167675.1|CO167675 FLD1_70_A08.g1_A029 Root flooded Pin... 54 9e-006
gb|DR060520.1|DR060520 RTNIT1_28_H03.b1_A029 Roots minus ni... 54 9e-006
gb|AI812992.1|AI812992 2E10 Pine Lambda Zap Xylem library P... 52 4e-005
gb|BF516675.1|BF516675 NXSI_002_B01_F NXSI (Nsf Xylem Side ... 52 4e-005
gb|CF394902.1|CF394902 RTDS2_8_B01.b1_A021 Drought-stressed... 48 6e-004
gb|BX678794.1|BX678794 BX678794 RS Pinus pinaster cDNA clon... 46 0.002
gb|CO158939.1|CO158939 FLD1_10_F07.b1_A029 Root flooded Pin... 46 0.002
gb|DR020869.1|DR020869 STRS1_39_G06.g1_A034 Shoot tip pitch... 46 0.002
gb|DR071603.1|DR071603 RTDK1_21_A05.b1_A029 Roots, dark Pin... 46 0.002
gb|DR386010.1|DR386010 RTHG1_12_G05.b1_A029 Roots plus adde... 46 0.002
gb|DR386081.1|DR386081 RTHG1_12_G05.g1_A029 Roots plus adde... 46 0.002
>gb|CF397389.1|CF397389 RTDS3_3_G03.b2_A022 Drought-stressed loblolly pine roots DS3 Pinus
taeda cDNA clone RTDS3_3_G03_A022 3', mRNA sequence
Length = 599
Score = 54.0 bits (27), Expect = 9e-006
Identities = 69/83 (83%)
Strand = Plus / Minus
Query: 159 atacgagaaatctgcagacctctactgaaggcctggttgaacagcatccttggctggaac 218
||||| ||||| ||||| ||||||||||||||||| ||||| |||| | | |||||||
Sbjct: 97 atacgtgaaatttgcagccctctactgaaggcctgattgaagagcaaacgggtctggaac 38
Query: 219 tccgaaacaaacgggaaccaagc 241
|| || ||||| || ||||||||
Sbjct: 37 tcagatacaaatggaaaccaagc 15
>gb|CF397463.1|CF397463 RTDS3_3_G03.g1_A022 Drought-stressed loblolly pine roots DS3 Pinus
taeda cDNA clone RTDS3_3_G03_A022 5', mRNA sequence
Length = 773
Score = 54.0 bits (27), Expect = 9e-006
Identities = 69/83 (83%)
Strand = Plus / Minus
Query: 159 atacgagaaatctgcagacctctactgaaggcctggttgaacagcatccttggctggaac 218
||||| ||||| ||||| ||||||||||||||||| ||||| |||| | | |||||||
Sbjct: 600 atacgtgaaatttgcagccctctactgaaggcctgattgaagagcaaacgggtctggaac 541
Query: 219 tccgaaacaaacgggaaccaagc 241
|| || ||||| || ||||||||
Sbjct: 540 tcagatacaaatggaaaccaagc 518
>gb|CO167598.1|CO167598 FLD1_70_A08.b1_A029 Root flooded Pinus taeda cDNA clone
FLD1_70_A08_A029 3', mRNA sequence
Length = 820
Score = 54.0 bits (27), Expect = 9e-006
Identities = 69/83 (83%)
Strand = Plus / Minus
Query: 159 atacgagaaatctgcagacctctactgaaggcctggttgaacagcatccttggctggaac 218
||||| ||||| |||| ||||||||||||||||||||||| |||| | |||||||
Sbjct: 313 atacgtgaaatttgcaagcctctactgaaggcctggttgaagagcaaacgactctggaac 254
Query: 219 tccgaaacaaacgggaaccaagc 241
||||| ||||| || ||||||||
Sbjct: 253 tccgatacaaatggaaaccaagc 231
>gb|CO167675.1|CO167675 FLD1_70_A08.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_70_A08_A029 5', mRNA sequence
Length = 501
Score = 54.0 bits (27), Expect = 9e-006
Identities = 69/83 (83%)
Strand = Plus / Minus
Query: 159 atacgagaaatctgcagacctctactgaaggcctggttgaacagcatccttggctggaac 218
||||| ||||| |||| ||||||||||||||||||||||| |||| | |||||||
Sbjct: 321 atacgtgaaatttgcaagcctctactgaaggcctggttgaagagcaaacgactctggaac 262
Query: 219 tccgaaacaaacgggaaccaagc 241
||||| ||||| || ||||||||
Sbjct: 261 tccgatacaaatggaaaccaagc 239
>gb|DR060520.1|DR060520 RTNIT1_28_H03.b1_A029 Roots minus nitrogen Pinus taeda cDNA clone
RTNIT1_28_H03_A029 3', mRNA sequence
Length = 692
Score = 54.0 bits (27), Expect = 9e-006
Identities = 69/83 (83%)
Strand = Plus / Minus
Query: 159 atacgagaaatctgcagacctctactgaaggcctggttgaacagcatccttggctggaac 218
||||| ||||| ||||| ||||||||||||||||| ||||| |||| | | |||||||
Sbjct: 273 atacgtgaaatttgcagccctctactgaaggcctgattgaagagcaaacgggtctggaac 214
Query: 219 tccgaaacaaacgggaaccaagc 241
|| || ||||| || ||||||||
Sbjct: 213 tcagatacaaatggaaaccaagc 191
>gb|AI812992.1|AI812992 2E10 Pine Lambda Zap Xylem library Pinus taeda cDNA, mRNA sequence
Length = 675
Score = 52.0 bits (26), Expect = 4e-005
Identities = 41/46 (89%)
Strand = Plus / Minus
Query: 159 atacgagaaatctgcagacctctactgaaggcctggttgaacagca 204
||||| |||||||||| ||| |||||||||||||| ||||| ||||
Sbjct: 662 atacgtgaaatctgcaaacccctactgaaggcctgattgaaaagca 617
>gb|BF516675.1|BF516675 NXSI_002_B01_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_002_B01 5' similar to Arabidopsis thaliana
sequence At5g13000 callose synthase catalytic subunit
-like protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 447
Score = 52.0 bits (26), Expect = 4e-005
Identities = 41/46 (89%)
Strand = Plus / Minus
Query: 159 atacgagaaatctgcagacctctactgaaggcctggttgaacagca 204
||||| |||||||||| ||| |||||||||||||| ||||| ||||
Sbjct: 173 atacgtgaaatctgcaaacccctactgaaggcctgattgaaaagca 128
>gb|CF394902.1|CF394902 RTDS2_8_B01.b1_A021 Drought-stressed loblolly pine roots DS2 Pinus
taeda cDNA clone RTDS2_8_B01_A021 3', mRNA sequence
Length = 559
Score = 48.1 bits (24), Expect = 6e-004
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 371 accccatccagttggcatgaacgcaaggatgc 402
||||||||||||||| ||||| ||||||||||
Sbjct: 50 accccatccagttggtatgaatgcaaggatgc 19
>gb|BX678794.1|BX678794 BX678794 RS Pinus pinaster cDNA clone RS15C01, mRNA sequence
Length = 488
Score = 46.1 bits (23), Expect = 0.002
Identities = 68/83 (81%)
Strand = Plus / Minus
Query: 159 atacgagaaatctgcagacctctactgaaggcctggttgaacagcatccttggctggaac 218
||||| ||||| |||| ||||||||||| ||||||||||| || | | | |||||||
Sbjct: 354 atacgtgaaatttgcaagcctctactgaacgcctggttgaagagaaaacgggtctggaac 295
Query: 219 tccgaaacaaacgggaaccaagc 241
||||| ||||| || ||||||||
Sbjct: 294 tccgatacaaatggaaaccaagc 272
>gb|CO158939.1|CO158939 FLD1_10_F07.b1_A029 Root flooded Pinus taeda cDNA clone
FLD1_10_F07_A029 3', mRNA sequence
Length = 760
Score = 46.1 bits (23), Expect = 0.002
Identities = 68/83 (81%)
Strand = Plus / Minus
Query: 159 atacgagaaatctgcagacctctactgaaggcctggttgaacagcatccttggctggaac 218
||||| ||||| |||| ||||||||||| ||||||||||| || | | | |||||||
Sbjct: 251 atacgtgaaatttgcaagcctctactgaacgcctggttgaagagaaaacgggtctggaac 192
Query: 219 tccgaaacaaacgggaaccaagc 241
||||| ||||| || ||||||||
Sbjct: 191 tccgatacaaatggaaaccaagc 169
>gb|DR020869.1|DR020869 STRS1_39_G06.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_39_G06_A034 5', mRNA sequence
Length = 683
Score = 46.1 bits (23), Expect = 0.002
Identities = 68/83 (81%)
Strand = Plus / Plus
Query: 159 atacgagaaatctgcagacctctactgaaggcctggttgaacagcatccttggctggaac 218
||||| ||||| |||| ||||||||||||||||| ||||| |||| | | |||||||
Sbjct: 309 atacgtgaaatttgcaaccctctactgaaggcctgattgaagagcaaacgggtctggaac 368
Query: 219 tccgaaacaaacgggaaccaagc 241
|| || ||||| || ||||||||
Sbjct: 369 tcagatacaaatggaaaccaagc 391
>gb|DR071603.1|DR071603 RTDK1_21_A05.b1_A029 Roots, dark Pinus taeda cDNA clone
RTDK1_21_A05_A029 3', mRNA sequence
Length = 769
Score = 46.1 bits (23), Expect = 0.002
Identities = 68/83 (81%)
Strand = Plus / Minus
Query: 159 atacgagaaatctgcagacctctactgaaggcctggttgaacagcatccttggctggaac 218
||||| ||||| |||| ||||||||||| ||||||||||| || | | | |||||||
Sbjct: 383 atacgtgaaatttgcaagcctctactgaacgcctggttgaagagaaaacgggtctggaac 324
Query: 219 tccgaaacaaacgggaaccaagc 241
||||| ||||| || ||||||||
Sbjct: 323 tccgatacaaatggaaaccaagc 301
>gb|DR386010.1|DR386010 RTHG1_12_G05.b1_A029 Roots plus added mercury Pinus taeda cDNA
clone RTHG1_12_G05_A029 3', mRNA sequence
Length = 806
Score = 46.1 bits (23), Expect = 0.002
Identities = 68/83 (81%)
Strand = Plus / Minus
Query: 159 atacgagaaatctgcagacctctactgaaggcctggttgaacagcatccttggctggaac 218
||||| ||||| |||| ||||||||||| ||||||||||| || | | | |||||||
Sbjct: 236 atacgtgaaatttgcaagcctctactgaacgcctggttgaagagaaaacgggtctggaac 177
Query: 219 tccgaaacaaacgggaaccaagc 241
||||| ||||| || ||||||||
Sbjct: 176 tccgatacaaatggaaaccaagc 154
>gb|DR386081.1|DR386081 RTHG1_12_G05.g1_A029 Roots plus added mercury Pinus taeda cDNA
clone RTHG1_12_G05_A029 5', mRNA sequence
Length = 804
Score = 46.1 bits (23), Expect = 0.002
Identities = 68/83 (81%)
Strand = Plus / Minus
Query: 159 atacgagaaatctgcagacctctactgaaggcctggttgaacagcatccttggctggaac 218
||||| ||||| |||| ||||||||||| ||||||||||| || | | | |||||||
Sbjct: 380 atacgtgaaatttgcaagcctctactgaacgcctggttgaagagaaaacgggtctggaac 321
Query: 219 tccgaaacaaacgggaaccaagc 241
||||| ||||| || ||||||||
Sbjct: 320 tccgatacaaatggaaaccaagc 298
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 74,110
Number of Sequences: 355925
Number of extensions: 74110
Number of successful extensions: 21570
Number of sequences better than 0.5: 14
Number of HSP's better than 0.5 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 21542
Number of HSP's gapped (non-prelim): 28
length of query: 830
length of database: 217,277,237
effective HSP length: 19
effective length of query: 811
effective length of database: 210,514,662
effective search space: 170727390882
effective search space used: 170727390882
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)