BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2404801.2.3
(1028 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CO157755.1|CO157755 FLD1_1_H02.g1_A029 Root flooded Pinu... 42 0.044
gb|DR050119.1|DR050119 RTBOR1_21_H11.b1_A029 Roots plus add... 42 0.044
gb|DR050199.1|DR050199 RTBOR1_21_H11.g1_A029 Roots plus add... 42 0.044
gb|DR071226.1|DR071226 RTDK1_18_B02.g1_A029 Roots, dark Pin... 42 0.044
gb|DR100644.1|DR100644 STRR1_66_D11.b1_A033 Stem Response R... 42 0.044
>gb|CO157755.1|CO157755 FLD1_1_H02.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_1_H02_A029 5', mRNA sequence
Length = 706
Score = 42.1 bits (21), Expect = 0.044
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 339 ttgattattgcccagaagaatcatcacac 367
|||||| |||| |||||||||||||||||
Sbjct: 179 ttgattgttgcgcagaagaatcatcacac 207
>gb|DR050119.1|DR050119 RTBOR1_21_H11.b1_A029 Roots plus added boron Pinus taeda cDNA clone
RTBOR1_21_H11_A029 3', mRNA sequence
Length = 848
Score = 42.1 bits (21), Expect = 0.044
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 339 ttgattattgcccagaagaatcatcacac 367
|||||| |||| |||||||||||||||||
Sbjct: 59 ttgattgttgcgcagaagaatcatcacac 87
>gb|DR050199.1|DR050199 RTBOR1_21_H11.g1_A029 Roots plus added boron Pinus taeda cDNA clone
RTBOR1_21_H11_A029 5', mRNA sequence
Length = 830
Score = 42.1 bits (21), Expect = 0.044
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 339 ttgattattgcccagaagaatcatcacac 367
|||||| |||| |||||||||||||||||
Sbjct: 380 ttgattgttgcgcagaagaatcatcacac 408
>gb|DR071226.1|DR071226 RTDK1_18_B02.g1_A029 Roots, dark Pinus taeda cDNA clone
RTDK1_18_B02_A029 5', mRNA sequence
Length = 700
Score = 42.1 bits (21), Expect = 0.044
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 339 ttgattattgcccagaagaatcatcacac 367
|||||| |||| |||||||||||||||||
Sbjct: 224 ttgattgttgcgcagaagaatcatcacac 252
>gb|DR100644.1|DR100644 STRR1_66_D11.b1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_66_D11_A033 3', mRNA sequence
Length = 839
Score = 42.1 bits (21), Expect = 0.044
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 339 ttgattattgcccagaagaatcatcacac 367
|||||| |||| |||||||||||||||||
Sbjct: 755 ttgattgttgcgcagaagaatcatcacac 727
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 112,452
Number of Sequences: 355925
Number of extensions: 112452
Number of successful extensions: 28989
Number of sequences better than 0.5: 5
Number of HSP's better than 0.5 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 28982
Number of HSP's gapped (non-prelim): 7
length of query: 1028
length of database: 217,277,237
effective HSP length: 19
effective length of query: 1009
effective length of database: 210,514,662
effective search space: 212409293958
effective search space used: 212409293958
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)