BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2276392.2.1
(644 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BX680042.1|BX680042 BX680042 RS Pinus pinaster cDNA clon... 70 1e-010
gb|CO158538.1|CO158538 FLD1_7_C05.g1_A029 Root flooded Pinu... 66 2e-009
gb|DR388591.1|DR388591 RTHG1_29_F03.b1_A029 Roots plus adde... 66 2e-009
gb|BX681771.1|BX681771 BX681771 RS Pinus pinaster cDNA clon... 58 5e-007
gb|CX712435.1|CX712435 RTPQ1_2_B07.g2_A032 Roots treated wi... 58 5e-007
gb|CO158463.1|CO158463 FLD1_7_C05.b1_A029 Root flooded Pinu... 56 2e-006
gb|CF665886.1|CF665886 RTCNT1_19_F01.b1_A029 Root control P... 54 7e-006
gb|DR021458.1|DR021458 STRS1_44_F12.g1_A034 Shoot tip pitch... 54 7e-006
gb|AW289731.1|AW289731 NXNV005H09F Nsf Xylem Normal wood Ve... 52 3e-005
gb|CD028348.1|CD028348 NXNV005H09 Nsf Xylem Normal wood Ver... 52 3e-005
gb|AW043347.1|AW043347 ST32C07 Pine TriplEx shoot tip libra... 48 4e-004
gb|AW982027.1|AW982027 PC23A03 Pine TriplEx pollen cone lib... 48 4e-004
gb|BG040349.1|BG040349 NXSI_107_C07_F NXSI (Nsf Xylem Side ... 48 4e-004
gb|BG275457.1|BG275457 NXSI_139_A08_F NXSI (Nsf Xylem Side ... 48 4e-004
gb|BM133475.1|BM133475 NXLV_007_A05_F NXLV (Nsf Xylem Late ... 48 4e-004
gb|BQ696622.1|BQ696622 NXPV_043_D08_F NXPV (Nsf Xylem Plani... 48 4e-004
gb|BQ699020.1|BQ699020 NXRV118_D10_F NXRV (Nsf Xylem Root w... 48 4e-004
gb|BQ700831.1|BQ700831 NXRV112_A06_F NXRV (Nsf Xylem Root w... 48 4e-004
gb|CF392690.1|CF392690 RTDR3_5_E02.g1_A022 Loblolly pine ro... 48 4e-004
gb|CF395863.1|CF395863 RTDS2_19_G07.b1_A021 Drought-stresse... 48 4e-004
gb|CF395922.1|CF395922 RTDS2_19_G07.g1_A021 Drought-stresse... 48 4e-004
gb|CF470550.1|CF470550 RTDS1_13_E11.b1_A015 Drought-stresse... 48 4e-004
gb|CF470616.1|CF470616 RTDS1_13_E11.g1_A015 Drought-stresse... 48 4e-004
gb|CF471664.1|CF471664 RTDS1_6_G10.b1_A015 Drought-stressed... 48 4e-004
gb|CO165995.1|CO165995 FLD1_58_C11.g1_A029 Root flooded Pin... 48 4e-004
gb|CO361147.1|CO361147 NDL2_3_C03.b1_A029 Needles control 2... 48 4e-004
gb|CV035055.1|CV035055 RTNACL1_13_G07.b1_A029 Roots plus ad... 48 4e-004
gb|CV035135.1|CV035135 RTNACL1_13_G07.g1_A029 Roots plus ad... 48 4e-004
gb|CV036384.1|CV036384 RTNACL1_58_H09.g1_A029 Roots plus ad... 48 4e-004
gb|CX646462.1|CX646462 COLD1_9_B07.g1_A029 Root cold Pinus ... 48 4e-004
gb|CX648845.1|CX648845 COLD1_31_G04.b1_A029 Root cold Pinus... 48 4e-004
gb|CX648922.1|CX648922 COLD1_31_G04.g1_A029 Root cold Pinus... 48 4e-004
gb|CX651289.1|CX651289 COLD1_51_H09.b1_A029 Root cold Pinus... 48 4e-004
gb|CX651369.1|CX651369 COLD1_51_H09.g1_A029 Root cold Pinus... 48 4e-004
gb|CX652961.1|CX652961 COLD1_62_C04.g1_A029 Root cold Pinus... 48 4e-004
gb|CX715540.1|CX715540 RTPQ1_34_G10.g1_A032 Roots treated w... 48 4e-004
gb|DN628003.1|DN628003 EST978819 Subtracted pine embryo lib... 48 4e-004
gb|DN629391.1|DN629391 EST980207 Subtracted pine embryo lib... 48 4e-004
gb|DN631511.1|DN631511 EST982327 Subtracted pine embryo lib... 48 4e-004
gb|DN631551.1|DN631551 EST982367 Subtracted pine embryo lib... 48 4e-004
gb|DR016754.1|DR016754 STRS1_12_A09.b1_A034 Shoot tip pitch... 48 4e-004
gb|DR016831.1|DR016831 STRS1_12_A09.g1_A034 Shoot tip pitch... 48 4e-004
gb|DR088564.1|DR088564 RTAL1_2_F09.g1_A029 Roots plus added... 48 4e-004
gb|DR110501.1|DR110501 RTS1_11_F07.b1_A029 Roots minus sulf... 48 4e-004
gb|DR167170.1|DR167170 RTPHOS1_17_D09.b1_A029 Roots minus p... 48 4e-004
gb|DR744690.1|DR744690 RTCU1_24_E12.b1_A029 Roots plus adde... 48 4e-004
gb|DR744762.1|DR744762 RTCU1_24_E12.g1_A029 Roots plus adde... 48 4e-004
gb|DR745149.1|DR745149 RTCU1_27_H05.b1_A029 Roots plus adde... 48 4e-004
gb|DR745218.1|DR745218 RTCU1_27_H05.g1_A029 Roots plus adde... 48 4e-004
gb|DR088508.1|DR088508 RTAL1_2_F09.b1_A029 Roots plus added... 46 0.002
gb|AW042692.1|AW042692 ST23D06 Pine TriplEx shoot tip libra... 42 0.027
gb|BF609105.1|BF609105 NXSI_040_D10_F NXSI (Nsf Xylem Side ... 42 0.027
gb|BF777173.1|BF777173 NXSI_066_C03_F NXSI (Nsf Xylem Side ... 42 0.027
gb|CD025305.1|CD025305 NXSI_040_E02_F NXSI (Nsf Xylem Side ... 42 0.027
gb|AW290179.1|AW290179 NXNV015A05F Nsf Xylem Normal wood Ve... 40 0.11
gb|AL750317.1|AL750317 AL750317 RN Pinus pinaster cDNA clon... 40 0.11
gb|BX249526.1|BX249526 BX249526 Pinus pinaster differenciat... 40 0.11
gb|BX250231.1|BX250231 BX250231 Pinus pinaster differenciat... 40 0.11
gb|BX252257.1|BX252257 BX252257 Pinus pinaster differenciat... 40 0.11
gb|BX252258.1|BX252258 BX252258 Pinus pinaster differenciat... 40 0.11
gb|BX253440.1|BX253440 BX253440 Pinus pinaster differenciat... 40 0.11
gb|BX254650.1|BX254650 BX254650 Pinus pinaster differenciat... 40 0.11
gb|BX255051.1|BX255051 BX255051 Pinus pinaster differenciat... 40 0.11
gb|AW758637.1|AW758637 NXNV_084_E03_F Nsf Xylem Normal wood... 40 0.11
gb|BE209319.1|BE209319 NXNV_166_C12_F Nsf Xylem Normal wood... 40 0.11
gb|BE496395.1|BE496395 NXCI_017_D01_F NXCI (Nsf Xylem Compr... 40 0.11
gb|BE496610.1|BE496610 NXCI_021_G01_F NXCI (Nsf Xylem Compr... 40 0.11
gb|BE643823.1|BE643823 NXCI_047_F11_F NXCI (Nsf Xylem Compr... 40 0.11
gb|BF010485.1|BF010485 NXCI_084_E08_F NXCI (Nsf Xylem Compr... 40 0.11
gb|BF518220.1|BF518220 NXSI_036_E04_F NXSI (Nsf Xylem Side ... 40 0.11
gb|BG040040.1|BG040040 NXSI_105_H03_F NXSI (Nsf Xylem Side ... 40 0.11
gb|BQ697224.1|BQ697224 NXPV_051_A06_F NXPV (Nsf Xylem Plani... 40 0.11
gb|BQ699236.1|BQ699236 NXRV121_B09_F NXRV (Nsf Xylem Root w... 40 0.11
gb|CD021794.1|CD021794 NXNV_139_D08_F Nsf Xylem Normal wood... 40 0.11
gb|CD025160.1|CD025160 NXSI_024_H04_F NXSI (Nsf Xylem Side ... 40 0.11
gb|CD026825.1|CD026825 NXNV015A05 Nsf Xylem Normal wood Ver... 40 0.11
gb|CF470225.1|CF470225 RTDS1_18_D01.b1_A015 Drought-stresse... 40 0.11
gb|CF470303.1|CF470303 RTDS1_18_D01.g1_A015 Drought-stresse... 40 0.11
gb|BX676882.1|BX676882 BX676882 RN Pinus pinaster cDNA clon... 40 0.11
gb|BX681218.1|BX681218 BX681218 RS Pinus pinaster cDNA clon... 40 0.11
gb|BX682720.1|BX682720 BX682720 Pinus pinaster differenciat... 40 0.11
gb|BX682866.1|BX682866 BX682866 Pinus pinaster differenciat... 40 0.11
gb|CR392712.1|CR392712 CR392712 RN Pinus pinaster cDNA clon... 40 0.11
gb|AW754712.1|AW754712 PC05E08 Pine TriplEx pollen cone lib... 38 0.43
gb|CD026060.1|CD026060 NXSI_095_B12_F NXSI (Nsf Xylem Side ... 38 0.43
>gb|BX680042.1|BX680042 BX680042 RS Pinus pinaster cDNA clone RS38E02, mRNA sequence
Length = 319
Score = 69.9 bits (35), Expect = 1e-010
Identities = 53/59 (89%)
Strand = Plus / Plus
Query: 344 tttttggttgaggaacagaagatagtgaagaaggtgttgaagatccaaaagaccaagga 402
||||||||||| ||||||||||| || |||||||| |||||||| |||||| |||||||
Sbjct: 67 tttttggttgaagaacagaagattgtcaagaaggttttgaagatgcaaaagtccaagga 125
>gb|CO158538.1|CO158538 FLD1_7_C05.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_7_C05_A029 5', mRNA sequence
Length = 731
Score = 65.9 bits (33), Expect = 2e-009
Identities = 66/77 (85%)
Strand = Plus / Plus
Query: 179 agcggaccgaagtgcccagtcaccgggaagaagatccaaggaattccacacctgagacct 238
|||||||| || ||||| || |||||||||| || || || ||||| || |||||||||
Sbjct: 274 agcggacctaaatgccccgttaccgggaagagaattcatgggattccccatctgagacct 333
Query: 239 gctgagtacaagaggtc 255
|||||||||||||||||
Sbjct: 334 gctgagtacaagaggtc 350
Score = 48.1 bits (24), Expect = 4e-004
Identities = 48/56 (85%)
Strand = Plus / Plus
Query: 347 ttggttgaggaacagaagatagtgaagaaggtgttgaagatccaaaagaccaagga 402
||||| || ||||||||||| || |||||||| || ||||| |||||| |||||||
Sbjct: 442 ttggtggaagaacagaagattgtcaagaaggttttaaagattcaaaagtccaagga 497
Score = 42.1 bits (21), Expect = 0.027
Identities = 51/61 (83%)
Strand = Plus / Plus
Query: 60 agatggtgcagcggctcacctaccggaagcggcacagctacgccaccaaatcgaaccaga 119
||||||||||| |||| || ||||| ||||| ||||| || || || ||||| |||||||
Sbjct: 155 agatggtgcagaggctaacgtaccgcaagcgccacagttatgcgacgaaatctaaccaga 214
Query: 120 c 120
|
Sbjct: 215 c 215
>gb|DR388591.1|DR388591 RTHG1_29_F03.b1_A029 Roots plus added mercury Pinus taeda cDNA
clone RTHG1_29_F03_A029 3', mRNA sequence
Length = 775
Score = 65.9 bits (33), Expect = 2e-009
Identities = 66/77 (85%)
Strand = Plus / Plus
Query: 179 agcggaccgaagtgcccagtcaccgggaagaagatccaaggaattccacacctgagacct 238
|||||||| || ||||| || |||||||||| || || || ||||| || |||||||||
Sbjct: 71 agcggacctaaatgccccgttaccgggaagagaattcatgggattccccatctgagacct 130
Query: 239 gctgagtacaagaggtc 255
|||||||||||||||||
Sbjct: 131 gctgagtacaagaggtc 147
Score = 48.1 bits (24), Expect = 4e-004
Identities = 48/56 (85%)
Strand = Plus / Plus
Query: 347 ttggttgaggaacagaagatagtgaagaaggtgttgaagatccaaaagaccaagga 402
||||| || ||||||||||| || |||||||| || ||||| |||||| |||||||
Sbjct: 239 ttggtggaagaacagaagattgtcaagaaggttttaaagattcaaaagtccaagga 294
>gb|BX681771.1|BX681771 BX681771 RS Pinus pinaster cDNA clone RS64D09, mRNA sequence
Length = 524
Score = 58.0 bits (29), Expect = 5e-007
Identities = 65/77 (84%)
Strand = Plus / Plus
Query: 179 agcggaccgaagtgcccagtcaccgggaagaagatccaaggaattccacacctgagacct 238
|||||||| || ||||| || ||||| |||| || || || ||||| || |||||||||
Sbjct: 383 agcggacctaaatgccctgttaccggcaagagaattcatgggattccccatctgagacct 442
Query: 239 gctgagtacaagaggtc 255
|||||||||||||||||
Sbjct: 443 gctgagtacaagaggtc 459
Score = 42.1 bits (21), Expect = 0.027
Identities = 51/61 (83%)
Strand = Plus / Plus
Query: 60 agatggtgcagcggctcacctaccggaagcggcacagctacgccaccaaatcgaaccaga 119
||||||||||| |||| || ||||| ||||| ||||| || || || ||||| |||||||
Sbjct: 264 agatggtgcagaggctaacgtaccgcaagcgccacagttatgcgacgaaatctaaccaga 323
Query: 120 c 120
|
Sbjct: 324 c 324
>gb|CX712435.1|CX712435 RTPQ1_2_B07.g2_A032 Roots treated with paraquat Pinus taeda cDNA
clone RTPQ1_2_B07_A032 5', mRNA sequence
Length = 764
Score = 58.0 bits (29), Expect = 5e-007
Identities = 65/77 (84%)
Strand = Plus / Plus
Query: 179 agcggaccgaagtgcccagtcaccgggaagaagatccaaggaattccacacctgagacct 238
|||||||| || ||||| || ||||| |||| || || || ||||| || |||||||||
Sbjct: 238 agcggacctaaatgccctgttaccggcaagagaattcatgggattccccatctgagacct 297
Query: 239 gctgagtacaagaggtc 255
|||||||||||||||||
Sbjct: 298 gctgagtacaagaggtc 314
Score = 54.0 bits (27), Expect = 7e-006
Identities = 45/51 (88%)
Strand = Plus / Plus
Query: 344 tttttggttgaggaacagaagatagtgaagaaggtgttgaagatccaaaag 394
|||||||| || ||||||||||| || |||||||| |||||||| ||||||
Sbjct: 403 tttttggtcgaagaacagaagattgtcaagaaggttttgaagatgcaaaag 453
Score = 42.1 bits (21), Expect = 0.027
Identities = 51/61 (83%)
Strand = Plus / Plus
Query: 60 agatggtgcagcggctcacctaccggaagcggcacagctacgccaccaaatcgaaccaga 119
||||||||||| |||| || ||||| ||||| ||||| || || || ||||| |||||||
Sbjct: 119 agatggtgcagaggctaacgtaccgtaagcgccacagttatgcgacgaaatctaaccaga 178
Query: 120 c 120
|
Sbjct: 179 c 179
>gb|CO158463.1|CO158463 FLD1_7_C05.b1_A029 Root flooded Pinus taeda cDNA clone
FLD1_7_C05_A029 3', mRNA sequence
Length = 615
Score = 56.0 bits (28), Expect = 2e-006
Identities = 49/56 (87%)
Strand = Plus / Plus
Query: 200 accgggaagaagatccaaggaattccacacctgagacctgctgagtacaagaggtc 255
|||||||||| || || || ||||| || ||||||||||||||||||||||||||
Sbjct: 1 accgggaagagaattcatgggattccccatctgagacctgctgagtacaagaggtc 56
Score = 48.1 bits (24), Expect = 4e-004
Identities = 48/56 (85%)
Strand = Plus / Plus
Query: 347 ttggttgaggaacagaagatagtgaagaaggtgttgaagatccaaaagaccaagga 402
||||| || ||||||||||| || |||||||| || ||||| |||||| |||||||
Sbjct: 148 ttggtggaagaacagaagattgtcaagaaggttttaaagattcaaaagtccaagga 203
>gb|CF665886.1|CF665886 RTCNT1_19_F01.b1_A029 Root control Pinus taeda cDNA clone
RTCNT1_19_F01_A029 3', mRNA sequence
Length = 679
Score = 54.0 bits (27), Expect = 7e-006
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 221 attccacacctgagacctgctgagtacaagaggtc 255
||||| || ||||||||||||||||||||||||||
Sbjct: 113 attccccatctgagacctgctgagtacaagaggtc 147
Score = 48.1 bits (24), Expect = 4e-004
Identities = 42/48 (87%)
Strand = Plus / Plus
Query: 347 ttggttgaggaacagaagatagtgaagaaggtgttgaagatccaaaag 394
||||| || ||||||||||| || |||||||| |||||||| ||||||
Sbjct: 239 ttggtggaagaacagaagattgtcaagaaggttttgaagattcaaaag 286
>gb|DR021458.1|DR021458 STRS1_44_F12.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_44_F12_A034 5', mRNA sequence
Length = 691
Score = 54.0 bits (27), Expect = 7e-006
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 221 attccacacctgagacctgctgagtacaagaggtc 255
||||| || ||||||||||||||||||||||||||
Sbjct: 220 attccccatctgagacctgctgagtacaagaggtc 254
Score = 48.1 bits (24), Expect = 4e-004
Identities = 42/48 (87%)
Strand = Plus / Plus
Query: 347 ttggttgaggaacagaagatagtgaagaaggtgttgaagatccaaaag 394
||||| || ||||||||||| || |||||||| |||||||| ||||||
Sbjct: 346 ttggtggaagaacagaagattgtcaagaaggttttgaagattcaaaag 393
Score = 42.1 bits (21), Expect = 0.027
Identities = 51/61 (83%)
Strand = Plus / Plus
Query: 60 agatggtgcagcggctcacctaccggaagcggcacagctacgccaccaaatcgaaccaga 119
||||||||||| |||| || ||||| ||||| ||||| || || || ||||| |||||||
Sbjct: 59 agatggtgcagaggctaacgtaccgcaagcgccacagttatgcgacgaaatctaaccaga 118
Query: 120 c 120
|
Sbjct: 119 c 119
>gb|AW289731.1|AW289731 NXNV005H09F Nsf Xylem Normal wood Vertical Pinus taeda cDNA clone
NXNV005H09 5', mRNA sequence
Length = 351
Score = 52.0 bits (26), Expect = 3e-005
Identities = 64/77 (83%)
Strand = Plus / Plus
Query: 179 agcggaccgaagtgcccagtcaccgggaagaagatccaaggaattccacacctgagacct 238
|||||||| || ||||| || ||||| |||| || || || ||||| || |||||||||
Sbjct: 182 agcggacctaaatgccctgttaccggcaagagaattcatgggattccccatctgagacct 241
Query: 239 gctgagtacaagaggtc 255
||||||||| |||||||
Sbjct: 242 gctgagtacnagaggtc 258
Score = 42.1 bits (21), Expect = 0.027
Identities = 51/61 (83%)
Strand = Plus / Plus
Query: 60 agatggtgcagcggctcacctaccggaagcggcacagctacgccaccaaatcgaaccaga 119
||||||||||| |||| || ||||| ||||| ||||| || || || ||||| |||||||
Sbjct: 63 agatggtgcagaggctaacgtaccgcaagcgccacagttatgcgacgaaatccaaccaga 122
Query: 120 c 120
|
Sbjct: 123 c 123
>gb|CD028348.1|CD028348 NXNV005H09 Nsf Xylem Normal wood Vertical Pinus taeda cDNA clone
NXNV005H09 5' similar to Arabidopsis thaliana sequence
At1g26880 60s ribosomal protein L34 see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 351
Score = 52.0 bits (26), Expect = 3e-005
Identities = 64/77 (83%)
Strand = Plus / Plus
Query: 179 agcggaccgaagtgcccagtcaccgggaagaagatccaaggaattccacacctgagacct 238
|||||||| || ||||| || ||||| |||| || || || ||||| || |||||||||
Sbjct: 182 agcggacctaaatgccctgttaccggcaagagaattcatgggattccccatctgagacct 241
Query: 239 gctgagtacaagaggtc 255
||||||||| |||||||
Sbjct: 242 gctgagtacnagaggtc 258
Score = 42.1 bits (21), Expect = 0.027
Identities = 51/61 (83%)
Strand = Plus / Plus
Query: 60 agatggtgcagcggctcacctaccggaagcggcacagctacgccaccaaatcgaaccaga 119
||||||||||| |||| || ||||| ||||| ||||| || || || ||||| |||||||
Sbjct: 63 agatggtgcagaggctaacgtaccgcaagcgccacagttatgcgacgaaatccaaccaga 122
Query: 120 c 120
|
Sbjct: 123 c 123
>gb|AW043347.1|AW043347 ST32C07 Pine TriplEx shoot tip library Pinus taeda cDNA clone
ST32C07, mRNA sequence
Length = 489
Score = 48.1 bits (24), Expect = 4e-004
Identities = 48/56 (85%)
Strand = Plus / Plus
Query: 347 ttggttgaggaacagaagatagtgaagaaggtgttgaagatccaaaagaccaagga 402
||||| || ||||||||||| || |||||||| |||||||| || ||| |||||||
Sbjct: 150 ttggtagaagaacagaagattgtcaagaaggttttgaagattcagaagtccaagga 205
Score = 40.1 bits (20), Expect = 0.11
Identities = 38/44 (86%)
Strand = Plus / Plus
Query: 212 atccaaggaattccacacctgagacctgctgagtacaagaggtc 255
||||| || ||||| || ||||| || |||||||||||||||||
Sbjct: 15 atccatgggattccccatctgaggccagctgagtacaagaggtc 58
>gb|AW982027.1|AW982027 PC23A03 Pine TriplEx pollen cone library Pinus taeda cDNA clone
PC23A03, mRNA sequence
Length = 585
Score = 48.1 bits (24), Expect = 4e-004
Identities = 48/56 (85%)
Strand = Plus / Plus
Query: 347 ttggttgaggaacagaagatagtgaagaaggtgttgaagatccaaaagaccaagga 402
||||| || ||||||||||| || |||||||| |||||||| || ||| |||||||
Sbjct: 319 ttggtagaagaacagaagattgtcaagaaggttttgaagattcagaagtccaagga 374
Score = 40.1 bits (20), Expect = 0.11
Identities = 38/44 (86%)
Strand = Plus / Plus
Query: 212 atccaaggaattccacacctgagacctgctgagtacaagaggtc 255
||||| || ||||| || ||||| || |||||||||||||||||
Sbjct: 184 atccatgggattccccatctgaggccagctgagtacaagaggtc 227
>gb|BG040349.1|BG040349 NXSI_107_C07_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_107_C07 5' similar to Arabidopsis thaliana
sequence At1g26880 60s ribosomal protein L34 see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 528
Score = 48.1 bits (24), Expect = 4e-004
Identities = 48/56 (85%)
Strand = Plus / Plus
Query: 347 ttggttgaggaacagaagatagtgaagaaggtgttgaagatccaaaagaccaagga 402
||||| || ||||||||||| || |||||||| |||||||| || ||| |||||||
Sbjct: 322 ttggtagaagaacagaagattgtcaagaaggttttgaagattcagaagtccaagga 377
Score = 40.1 bits (20), Expect = 0.11
Identities = 38/44 (86%)
Strand = Plus / Plus
Query: 212 atccaaggaattccacacctgagacctgctgagtacaagaggtc 255
||||| || ||||| || ||||| || |||||||||||||||||
Sbjct: 187 atccatgggattccccatctgaggccagctgagtacaagaggtc 230
>gb|BG275457.1|BG275457 NXSI_139_A08_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_139_A08 5' similar to Arabidopsis thaliana
sequence At1g26880 60s ribosomal protein L34 see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 521
Score = 48.1 bits (24), Expect = 4e-004
Identities = 48/56 (85%)
Strand = Plus / Plus
Query: 347 ttggttgaggaacagaagatagtgaagaaggtgttgaagatccaaaagaccaagga 402
||||| || ||||||||||| || |||||||| |||||||| || ||| |||||||
Sbjct: 191 ttggtagaagaacagaagattgtcaagaaggttttgaagattcagaagtccaagga 246
Score = 40.1 bits (20), Expect = 0.11
Identities = 38/44 (86%)
Strand = Plus / Plus
Query: 212 atccaaggaattccacacctgagacctgctgagtacaagaggtc 255
||||| || ||||| || ||||| || |||||||||||||||||
Sbjct: 56 atccatgggattccccatctgaggccagctgagtacaagaggtc 99
>gb|BM133475.1|BM133475 NXLV_007_A05_F NXLV (Nsf Xylem Late wood Vertical) Pinus taeda cDNA
clone NXLV_007_A05 5', mRNA sequence
Length = 284
Score = 48.1 bits (24), Expect = 4e-004
Identities = 48/56 (85%)
Strand = Plus / Plus
Query: 347 ttggttgaggaacagaagatagtgaagaaggtgttgaagatccaaaagaccaagga 402
||||| || ||||||||||| || |||||||| |||||||| || ||| |||||||
Sbjct: 42 ttggtagaagaacagaagattgtcaagaaggttttgaagattcagaagtccaagga 97
>gb|BQ696622.1|BQ696622 NXPV_043_D08_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_043_D08 5' similar to Arabidopsis
thaliana sequence At1g26880 60s ribosomal protein L34
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 337
Score = 48.1 bits (24), Expect = 4e-004
Identities = 48/56 (85%)
Strand = Plus / Plus
Query: 347 ttggttgaggaacagaagatagtgaagaaggtgttgaagatccaaaagaccaagga 402
||||| || ||||||||||| || |||||||| |||||||| || ||| |||||||
Sbjct: 95 ttggtagaagaacagaagattgtcaagaaggttttgaagattcagaagtccaagga 150
>gb|BQ699020.1|BQ699020 NXRV118_D10_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV118_D10 5' similar to Arabidopsis thaliana
sequence At1g26880 60s ribosomal protein L34 see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 567
Score = 48.1 bits (24), Expect = 4e-004
Identities = 48/56 (85%)
Strand = Plus / Plus
Query: 347 ttggttgaggaacagaagatagtgaagaaggtgttgaagatccaaaagaccaagga 402
||||| || ||||||||||| || |||||||| |||||||| || ||| |||||||
Sbjct: 353 ttggtagaagaacagaagattgtcaagaaggttttgaagattcagaagtccaagga 408
Score = 40.1 bits (20), Expect = 0.11
Identities = 38/44 (86%)
Strand = Plus / Plus
Query: 212 atccaaggaattccacacctgagacctgctgagtacaagaggtc 255
||||| || ||||| || ||||| || |||||||||||||||||
Sbjct: 218 atccatgggattccccatctgaggccagctgagtacaagaggtc 261
>gb|BQ700831.1|BQ700831 NXRV112_A06_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV112_A06 5' similar to Arabidopsis thaliana
sequence At1g26880 60s ribosomal protein L34 see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 521
Score = 48.1 bits (24), Expect = 4e-004
Identities = 48/56 (85%)
Strand = Plus / Plus
Query: 347 ttggttgaggaacagaagatagtgaagaaggtgttgaagatccaaaagaccaagga 402
||||| || ||||||||||| || |||||||| |||||||| || ||| |||||||
Sbjct: 353 ttggtagaagaacagaagattgtcaagaaggttttgaagattcagaagtccaagga 408
Score = 40.1 bits (20), Expect = 0.11
Identities = 38/44 (86%)
Strand = Plus / Plus
Query: 212 atccaaggaattccacacctgagacctgctgagtacaagaggtc 255
||||| || ||||| || ||||| || |||||||||||||||||
Sbjct: 218 atccatgggattccccatctgaggccagctgagtacaagaggtc 261
>gb|CF392690.1|CF392690 RTDR3_5_E02.g1_A022 Loblolly pine roots recovering from drought DR3
Pinus taeda cDNA clone RTDR3_5_E02_A022 5', mRNA
sequence
Length = 500
Score = 48.1 bits (24), Expect = 4e-004
Identities = 48/56 (85%)
Strand = Plus / Plus
Query: 347 ttggttgaggaacagaagatagtgaagaaggtgttgaagatccaaaagaccaagga 402
||||| || ||||||||||| || |||||||| |||||||| || ||| |||||||
Sbjct: 299 ttggtagaagaacagaagattgtcaagaaggttttgaagattcagaagtccaagga 354
Score = 40.1 bits (20), Expect = 0.11
Identities = 38/44 (86%)
Strand = Plus / Plus
Query: 212 atccaaggaattccacacctgagacctgctgagtacaagaggtc 255
||||| || ||||| || ||||| || |||||||||||||||||
Sbjct: 164 atccatgggattccccatctgaggccagctgagtacaagaggtc 207
>gb|CF395863.1|CF395863 RTDS2_19_G07.b1_A021 Drought-stressed loblolly pine roots DS2 Pinus
taeda cDNA clone RTDS2_19_G07_A021 3', mRNA sequence
Length = 585
Score = 48.1 bits (24), Expect = 4e-004
Identities = 48/56 (85%)
Strand = Plus / Plus
Query: 347 ttggttgaggaacagaagatagtgaagaaggtgttgaagatccaaaagaccaagga 402
||||| || ||||||||||| || |||||||| |||||||| || ||| |||||||
Sbjct: 212 ttggtagaagaacagaagattgtcaagaaggttttgaagattcagaagtccaagga 267
Score = 40.1 bits (20), Expect = 0.11
Identities = 38/44 (86%)
Strand = Plus / Plus
Query: 212 atccaaggaattccacacctgagacctgctgagtacaagaggtc 255
||||| || ||||| || ||||| || |||||||||||||||||
Sbjct: 77 atccatgggattccccatctgaggccagctgagtacaagaggtc 120
>gb|CF395922.1|CF395922 RTDS2_19_G07.g1_A021 Drought-stressed loblolly pine roots DS2 Pinus
taeda cDNA clone RTDS2_19_G07_A021 5', mRNA sequence
Length = 736
Score = 48.1 bits (24), Expect = 4e-004
Identities = 48/56 (85%)
Strand = Plus / Plus
Query: 347 ttggttgaggaacagaagatagtgaagaaggtgttgaagatccaaaagaccaagga 402
||||| || ||||||||||| || |||||||| |||||||| || ||| |||||||
Sbjct: 381 ttggtagaagaacagaagattgtcaagaaggttttgaagattcagaagtccaagga 436
Score = 40.1 bits (20), Expect = 0.11
Identities = 38/44 (86%)
Strand = Plus / Plus
Query: 212 atccaaggaattccacacctgagacctgctgagtacaagaggtc 255
||||| || ||||| || ||||| || |||||||||||||||||
Sbjct: 246 atccatgggattccccatctgaggccagctgagtacaagaggtc 289
>gb|CF470550.1|CF470550 RTDS1_13_E11.b1_A015 Drought-stressed loblolly pine roots DS1 Pinus
taeda cDNA clone RTDS1_13_E11_A015 3', mRNA sequence
Length = 681
Score = 48.1 bits (24), Expect = 4e-004
Identities = 48/56 (85%)
Strand = Plus / Plus
Query: 347 ttggttgaggaacagaagatagtgaagaaggtgttgaagatccaaaagaccaagga 402
||||| || ||||||||||| || |||||||| |||||||| || ||| |||||||
Sbjct: 339 ttggtagaagaacagaagattgtcaagaaggttttgaagattcagaagtccaagga 394
Score = 40.1 bits (20), Expect = 0.11
Identities = 38/44 (86%)
Strand = Plus / Plus
Query: 212 atccaaggaattccacacctgagacctgctgagtacaagaggtc 255
||||| || ||||| || ||||| || |||||||||||||||||
Sbjct: 204 atccatgggattccccatctgaggccagctgagtacaagaggtc 247
>gb|CF470616.1|CF470616 RTDS1_13_E11.g1_A015 Drought-stressed loblolly pine roots DS1 Pinus
taeda cDNA clone RTDS1_13_E11_A015 5', mRNA sequence
Length = 742
Score = 48.1 bits (24), Expect = 4e-004
Identities = 48/56 (85%)
Strand = Plus / Plus
Query: 347 ttggttgaggaacagaagatagtgaagaaggtgttgaagatccaaaagaccaagga 402
||||| || ||||||||||| || |||||||| |||||||| || ||| |||||||
Sbjct: 382 ttggtagaagaacagaagattgtcaagaaggttttgaagattcagaagtccaagga 437
Score = 40.1 bits (20), Expect = 0.11
Identities = 38/44 (86%)
Strand = Plus / Plus
Query: 212 atccaaggaattccacacctgagacctgctgagtacaagaggtc 255
||||| || ||||| || ||||| || |||||||||||||||||
Sbjct: 247 atccatgggattccccatctgaggccagctgagtacaagaggtc 290
>gb|CF471664.1|CF471664 RTDS1_6_G10.b1_A015 Drought-stressed loblolly pine roots DS1 Pinus
taeda cDNA clone RTDS1_6_G10_A015 3', mRNA sequence
Length = 635
Score = 48.1 bits (24), Expect = 4e-004
Identities = 48/56 (85%)
Strand = Plus / Plus
Query: 347 ttggttgaggaacagaagatagtgaagaaggtgttgaagatccaaaagaccaagga 402
||||| || ||||||||||| || |||||||| |||||||| || ||| |||||||
Sbjct: 397 ttggtagaagaacagaagattgtcaagaaggttttgaagattcagaagtccaagga 452
Score = 40.1 bits (20), Expect = 0.11
Identities = 38/44 (86%)
Strand = Plus / Plus
Query: 212 atccaaggaattccacacctgagacctgctgagtacaagaggtc 255
||||| || ||||| || ||||| || |||||||||||||||||
Sbjct: 262 atccatgggattccccatctgaggccagctgagtacaagaggtc 305
>gb|CO165995.1|CO165995 FLD1_58_C11.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_58_C11_A029 5', mRNA sequence
Length = 853
Score = 48.1 bits (24), Expect = 4e-004
Identities = 48/56 (85%)
Strand = Plus / Minus
Query: 347 ttggttgaggaacagaagatagtgaagaaggtgttgaagatccaaaagaccaagga 402
||||| || ||||||||||| || |||||||| |||||||| || ||| |||||||
Sbjct: 194 ttggtagaagaacagaagattgtcaagaaggttttgaagattcagaagtccaagga 139
Score = 40.1 bits (20), Expect = 0.11
Identities = 38/44 (86%)
Strand = Plus / Minus
Query: 212 atccaaggaattccacacctgagacctgctgagtacaagaggtc 255
||||| || ||||| || ||||| || |||||||||||||||||
Sbjct: 329 atccatgggattccccatctgaggccagctgagtacaagaggtc 286
>gb|CO361147.1|CO361147 NDL2_3_C03.b1_A029 Needles control 2 Pinus taeda cDNA clone
NDL2_3_C03_A029 3', mRNA sequence
Length = 790
Score = 48.1 bits (24), Expect = 4e-004
Identities = 48/56 (85%)
Strand = Plus / Minus
Query: 347 ttggttgaggaacagaagatagtgaagaaggtgttgaagatccaaaagaccaagga 402
||||| || ||||||||||| || |||||||| |||||||| || ||| |||||||
Sbjct: 480 ttggtagaagaacagaagattgtcaagaaggttttgaagattcagaagtccaagga 425
Score = 40.1 bits (20), Expect = 0.11
Identities = 38/44 (86%)
Strand = Plus / Minus
Query: 212 atccaaggaattccacacctgagacctgctgagtacaagaggtc 255
||||| || ||||| || ||||| || |||||||||||||||||
Sbjct: 615 atccatgggattccccatctgaggccagctgagtacaagaggtc 572
>gb|CV035055.1|CV035055 RTNACL1_13_G07.b1_A029 Roots plus added NaCl Pinus taeda cDNA clone
RTNACL1_13_G07_A029 3', mRNA sequence
Length = 688
Score = 48.1 bits (24), Expect = 4e-004
Identities = 48/56 (85%)
Strand = Plus / Plus
Query: 347 ttggttgaggaacagaagatagtgaagaaggtgttgaagatccaaaagaccaagga 402
||||| || ||||||||||| || |||||||| |||||||| || ||| |||||||
Sbjct: 364 ttggtagaagaacagaagattgtcaagaaggttttgaagattcagaagtccaagga 419
Score = 40.1 bits (20), Expect = 0.11
Identities = 38/44 (86%)
Strand = Plus / Plus
Query: 212 atccaaggaattccacacctgagacctgctgagtacaagaggtc 255
||||| || ||||| || ||||| || |||||||||||||||||
Sbjct: 229 atccatgggattccccatctgaggccagctgagtacaagaggtc 272
>gb|CV035135.1|CV035135 RTNACL1_13_G07.g1_A029 Roots plus added NaCl Pinus taeda cDNA clone
RTNACL1_13_G07_A029 5', mRNA sequence
Length = 710
Score = 48.1 bits (24), Expect = 4e-004
Identities = 48/56 (85%)
Strand = Plus / Plus
Query: 347 ttggttgaggaacagaagatagtgaagaaggtgttgaagatccaaaagaccaagga 402
||||| || ||||||||||| || |||||||| |||||||| || ||| |||||||
Sbjct: 361 ttggtagaagaacagaagattgtcaagaaggttttgaagattcagaagtccaagga 416
Score = 40.1 bits (20), Expect = 0.11
Identities = 38/44 (86%)
Strand = Plus / Plus
Query: 212 atccaaggaattccacacctgagacctgctgagtacaagaggtc 255
||||| || ||||| || ||||| || |||||||||||||||||
Sbjct: 226 atccatgggattccccatctgaggccagctgagtacaagaggtc 269
>gb|CV036384.1|CV036384 RTNACL1_58_H09.g1_A029 Roots plus added NaCl Pinus taeda cDNA clone
RTNACL1_58_H09_A029 5', mRNA sequence
Length = 620
Score = 48.1 bits (24), Expect = 4e-004
Identities = 48/56 (85%)
Strand = Plus / Plus
Query: 347 ttggttgaggaacagaagatagtgaagaaggtgttgaagatccaaaagaccaagga 402
||||| || ||||||||||| || |||||||| |||||||| || ||| |||||||
Sbjct: 401 ttggtagaagaacagaagattgtcaagaaggttttgaagattcagaagtccaagga 456
Score = 40.1 bits (20), Expect = 0.11
Identities = 38/44 (86%)
Strand = Plus / Plus
Query: 212 atccaaggaattccacacctgagacctgctgagtacaagaggtc 255
||||| || ||||| || ||||| || |||||||||||||||||
Sbjct: 266 atccatgggattccccatctgaggccagctgagtacaagaggtc 309
>gb|CX646462.1|CX646462 COLD1_9_B07.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_9_B07_A029 5', mRNA sequence
Length = 822
Score = 48.1 bits (24), Expect = 4e-004
Identities = 48/56 (85%)
Strand = Plus / Plus
Query: 347 ttggttgaggaacagaagatagtgaagaaggtgttgaagatccaaaagaccaagga 402
||||| || ||||||||||| || |||||||| |||||||| || ||| |||||||
Sbjct: 391 ttggtagaagaacagaagattgtcaagaaggttttgaagattcagaagtccaagga 446
Score = 40.1 bits (20), Expect = 0.11
Identities = 38/44 (86%)
Strand = Plus / Plus
Query: 212 atccaaggaattccacacctgagacctgctgagtacaagaggtc 255
||||| || ||||| || ||||| || |||||||||||||||||
Sbjct: 256 atccatgggattccccatctgaggccagctgagtacaagaggtc 299
>gb|CX648845.1|CX648845 COLD1_31_G04.b1_A029 Root cold Pinus taeda cDNA clone
COLD1_31_G04_A029 3', mRNA sequence
Length = 659
Score = 48.1 bits (24), Expect = 4e-004
Identities = 48/56 (85%)
Strand = Plus / Plus
Query: 347 ttggttgaggaacagaagatagtgaagaaggtgttgaagatccaaaagaccaagga 402
||||| || ||||||||||| || |||||||| |||||||| || ||| |||||||
Sbjct: 317 ttggtagaagaacagaagattgtcaagaaggttttgaagattcagaagtccaagga 372
Score = 40.1 bits (20), Expect = 0.11
Identities = 38/44 (86%)
Strand = Plus / Plus
Query: 212 atccaaggaattccacacctgagacctgctgagtacaagaggtc 255
||||| || ||||| || ||||| || |||||||||||||||||
Sbjct: 182 atccatgggattccccatctgaggccagctgagtacaagaggtc 225
>gb|CX648922.1|CX648922 COLD1_31_G04.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_31_G04_A029 5', mRNA sequence
Length = 524
Score = 48.1 bits (24), Expect = 4e-004
Identities = 48/56 (85%)
Strand = Plus / Plus
Query: 347 ttggttgaggaacagaagatagtgaagaaggtgttgaagatccaaaagaccaagga 402
||||| || ||||||||||| || |||||||| |||||||| || ||| |||||||
Sbjct: 393 ttggtagaagaacagaagattgtcaagaaggttttgaagattcagaagtccaagga 448
Score = 40.1 bits (20), Expect = 0.11
Identities = 38/44 (86%)
Strand = Plus / Plus
Query: 212 atccaaggaattccacacctgagacctgctgagtacaagaggtc 255
||||| || ||||| || ||||| || |||||||||||||||||
Sbjct: 258 atccatgggattccccatctgaggccagctgagtacaagaggtc 301
>gb|CX651289.1|CX651289 COLD1_51_H09.b1_A029 Root cold Pinus taeda cDNA clone
COLD1_51_H09_A029 3', mRNA sequence
Length = 699
Score = 48.1 bits (24), Expect = 4e-004
Identities = 48/56 (85%)
Strand = Plus / Plus
Query: 347 ttggttgaggaacagaagatagtgaagaaggtgttgaagatccaaaagaccaagga 402
||||| || ||||||||||| || |||||||| |||||||| || ||| |||||||
Sbjct: 359 ttggtagaagaacagaagattgtcaagaaggttttgaagattcagaagtccaagga 414
Score = 40.1 bits (20), Expect = 0.11
Identities = 38/44 (86%)
Strand = Plus / Plus
Query: 212 atccaaggaattccacacctgagacctgctgagtacaagaggtc 255
||||| || ||||| || ||||| || |||||||||||||||||
Sbjct: 224 atccatgggattccccatctgaggccagctgagtacaagaggtc 267
>gb|CX651369.1|CX651369 COLD1_51_H09.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_51_H09_A029 5', mRNA sequence
Length = 604
Score = 48.1 bits (24), Expect = 4e-004
Identities = 48/56 (85%)
Strand = Plus / Plus
Query: 347 ttggttgaggaacagaagatagtgaagaaggtgttgaagatccaaaagaccaagga 402
||||| || ||||||||||| || |||||||| |||||||| || ||| |||||||
Sbjct: 346 ttggtagaagaacagaagattgtcaagaaggttttgaagattcagaagtccaagga 401
Score = 40.1 bits (20), Expect = 0.11
Identities = 38/44 (86%)
Strand = Plus / Plus
Query: 212 atccaaggaattccacacctgagacctgctgagtacaagaggtc 255
||||| || ||||| || ||||| || |||||||||||||||||
Sbjct: 211 atccatgggattccccatctgaggccagctgagtacaagaggtc 254
>gb|CX652961.1|CX652961 COLD1_62_C04.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_62_C04_A029 5', mRNA sequence
Length = 819
Score = 48.1 bits (24), Expect = 4e-004
Identities = 42/48 (87%)
Strand = Plus / Minus
Query: 347 ttggttgaggaacagaagatagtgaagaaggtgttgaagatccaaaag 394
||||| || ||||||||||| || |||||||| |||||||| ||||||
Sbjct: 316 ttggtggaagaacagaagattgtcaagaaggttttgaagattcaaaag 269
>gb|CX715540.1|CX715540 RTPQ1_34_G10.g1_A032 Roots treated with paraquat Pinus taeda cDNA
clone RTPQ1_34_G10_A032 5', mRNA sequence
Length = 596
Score = 48.1 bits (24), Expect = 4e-004
Identities = 48/56 (85%)
Strand = Plus / Plus
Query: 347 ttggttgaggaacagaagatagtgaagaaggtgttgaagatccaaaagaccaagga 402
||||| || ||||||||||| || |||||||| |||||||| || ||| |||||||
Sbjct: 367 ttggtagaagaacagaagattgtcaagaaggttttgaagattcagaagtccaagga 422
Score = 40.1 bits (20), Expect = 0.11
Identities = 38/44 (86%)
Strand = Plus / Plus
Query: 212 atccaaggaattccacacctgagacctgctgagtacaagaggtc 255
||||| || ||||| || ||||| || |||||||||||||||||
Sbjct: 232 atccatgggattccccatctgaggccagctgagtacaagaggtc 275
>gb|DN628003.1|DN628003 EST978819 Subtracted pine embryo library, Lib_C Pinus taeda cDNA
clone PTAAS91, mRNA sequence
Length = 374
Score = 48.1 bits (24), Expect = 4e-004
Identities = 48/56 (85%)
Strand = Plus / Plus
Query: 347 ttggttgaggaacagaagatagtgaagaaggtgttgaagatccaaaagaccaagga 402
||||| || ||||||||||| || |||||||| |||||||| || ||| |||||||
Sbjct: 102 ttggtagaagaacagaagattgtcaagaaggttttgaagattcagaagtccaagga 157
>gb|DN629391.1|DN629391 EST980207 Subtracted pine embryo library, Lib_C Pinus taeda cDNA
clone PTABE06, mRNA sequence
Length = 373
Score = 48.1 bits (24), Expect = 4e-004
Identities = 48/56 (85%)
Strand = Plus / Minus
Query: 347 ttggttgaggaacagaagatagtgaagaaggtgttgaagatccaaaagaccaagga 402
||||| || ||||||||||| || |||||||| |||||||| || ||| |||||||
Sbjct: 272 ttggtagaagaacagaagattgtcaagaaggttttgaagattcagaagtccaagga 217
>gb|DN631511.1|DN631511 EST982327 Subtracted pine embryo library, Lib_C Pinus taeda cDNA
clone PTACA80, mRNA sequence
Length = 372
Score = 48.1 bits (24), Expect = 4e-004
Identities = 48/56 (85%)
Strand = Plus / Plus
Query: 347 ttggttgaggaacagaagatagtgaagaaggtgttgaagatccaaaagaccaagga 402
||||| || ||||||||||| || |||||||| |||||||| || ||| |||||||
Sbjct: 102 ttggtagaagaacagaagattgtcaagaaggttttgaagattcagaagtccaagga 157
>gb|DN631551.1|DN631551 EST982367 Subtracted pine embryo library, Lib_C Pinus taeda cDNA
clone PTACB47, mRNA sequence
Length = 373
Score = 48.1 bits (24), Expect = 4e-004
Identities = 48/56 (85%)
Strand = Plus / Minus
Query: 347 ttggttgaggaacagaagatagtgaagaaggtgttgaagatccaaaagaccaagga 402
||||| || ||||||||||| || |||||||| |||||||| || ||| |||||||
Sbjct: 272 ttggtagaagaacagaagattgtcaagaaggttttgaagattcagaagtccaagga 217
>gb|DR016754.1|DR016754 STRS1_12_A09.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_12_A09_A034 3', mRNA sequence
Length = 582
Score = 48.1 bits (24), Expect = 4e-004
Identities = 48/56 (85%)
Strand = Plus / Plus
Query: 347 ttggttgaggaacagaagatagtgaagaaggtgttgaagatccaaaagaccaagga 402
||||| || ||||||||||| || |||||||| |||||||| || ||| |||||||
Sbjct: 249 ttggtagaagaacagaagattgtcaagaaggttttgaagattcagaagtccaagga 304
Score = 40.1 bits (20), Expect = 0.11
Identities = 38/44 (86%)
Strand = Plus / Plus
Query: 212 atccaaggaattccacacctgagacctgctgagtacaagaggtc 255
||||| || ||||| || ||||| || |||||||||||||||||
Sbjct: 114 atccatgggattccccatctgaggccagctgagtacaagaggtc 157
>gb|DR016831.1|DR016831 STRS1_12_A09.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_12_A09_A034 5', mRNA sequence
Length = 581
Score = 48.1 bits (24), Expect = 4e-004
Identities = 48/56 (85%)
Strand = Plus / Plus
Query: 347 ttggttgaggaacagaagatagtgaagaaggtgttgaagatccaaaagaccaagga 402
||||| || ||||||||||| || |||||||| |||||||| || ||| |||||||
Sbjct: 232 ttggtagaagaacagaagattgtcaagaaggttttgaagattcagaagtccaagga 287
Score = 40.1 bits (20), Expect = 0.11
Identities = 38/44 (86%)
Strand = Plus / Plus
Query: 212 atccaaggaattccacacctgagacctgctgagtacaagaggtc 255
||||| || ||||| || ||||| || |||||||||||||||||
Sbjct: 97 atccatgggattccccatctgaggccagctgagtacaagaggtc 140
>gb|DR088564.1|DR088564 RTAL1_2_F09.g1_A029 Roots plus added aluminum Pinus taeda cDNA
clone RTAL1_2_F09_A029 5', mRNA sequence
Length = 736
Score = 48.1 bits (24), Expect = 4e-004
Identities = 48/56 (85%)
Strand = Plus / Plus
Query: 347 ttggttgaggaacagaagatagtgaagaaggtgttgaagatccaaaagaccaagga 402
||||| || ||||||||||| || |||||||| |||||||| || ||| |||||||
Sbjct: 404 ttggtagaagaacagaagattgtcaagaaggttttgaagattcagaagtccaagga 459
Score = 40.1 bits (20), Expect = 0.11
Identities = 38/44 (86%)
Strand = Plus / Plus
Query: 212 atccaaggaattccacacctgagacctgctgagtacaagaggtc 255
||||| || ||||| || ||||| || |||||||||||||||||
Sbjct: 269 atccatgggattccccatctgaggccagctgagtacaagaggtc 312
>gb|DR110501.1|DR110501 RTS1_11_F07.b1_A029 Roots minus sulfur Pinus taeda cDNA clone
RTS1_11_F07_A029 3', mRNA sequence
Length = 334
Score = 48.1 bits (24), Expect = 4e-004
Identities = 48/56 (85%)
Strand = Plus / Plus
Query: 347 ttggttgaggaacagaagatagtgaagaaggtgttgaagatccaaaagaccaagga 402
||||| || ||||||||||| || |||||||| |||||||| || ||| |||||||
Sbjct: 26 ttggtagaagaacagaagattgtcaagaaggttttgaagattcagaagtccaagga 81
>gb|DR167170.1|DR167170 RTPHOS1_17_D09.b1_A029 Roots minus phosphorous Pinus taeda cDNA
clone RTPHOS1_17_D09_A029 3', mRNA sequence
Length = 650
Score = 48.1 bits (24), Expect = 4e-004
Identities = 48/56 (85%)
Strand = Plus / Minus
Query: 347 ttggttgaggaacagaagatagtgaagaaggtgttgaagatccaaaagaccaagga 402
||||| || ||||||||||| || |||||||| |||||||| || ||| |||||||
Sbjct: 246 ttggtagaagaacagaagattgtcaagaaggttttgaagattcagaagtccaagga 191
Score = 40.1 bits (20), Expect = 0.11
Identities = 38/44 (86%)
Strand = Plus / Minus
Query: 212 atccaaggaattccacacctgagacctgctgagtacaagaggtc 255
||||| || ||||| || ||||| || |||||||||||||||||
Sbjct: 381 atccatgggattccccatctgaggccagctgagtacaagaggtc 338
>gb|DR744690.1|DR744690 RTCU1_24_E12.b1_A029 Roots plus added copper Pinus taeda cDNA clone
RTCU1_24_E12_A029 3', mRNA sequence
Length = 550
Score = 48.1 bits (24), Expect = 4e-004
Identities = 48/56 (85%)
Strand = Plus / Plus
Query: 347 ttggttgaggaacagaagatagtgaagaaggtgttgaagatccaaaagaccaagga 402
||||| || ||||||||||| || |||||||| |||||||| || ||| |||||||
Sbjct: 303 ttggtagaagaacagaagattgtcaagaaggttttgaagattcagaagtccaagga 358
Score = 40.1 bits (20), Expect = 0.11
Identities = 38/44 (86%)
Strand = Plus / Plus
Query: 212 atccaaggaattccacacctgagacctgctgagtacaagaggtc 255
||||| || ||||| || ||||| || |||||||||||||||||
Sbjct: 168 atccatgggattccccatctgaggccagctgagtacaagaggtc 211
>gb|DR744762.1|DR744762 RTCU1_24_E12.g1_A029 Roots plus added copper Pinus taeda cDNA clone
RTCU1_24_E12_A029 5', mRNA sequence
Length = 545
Score = 48.1 bits (24), Expect = 4e-004
Identities = 48/56 (85%)
Strand = Plus / Plus
Query: 347 ttggttgaggaacagaagatagtgaagaaggtgttgaagatccaaaagaccaagga 402
||||| || ||||||||||| || |||||||| |||||||| || ||| |||||||
Sbjct: 279 ttggtagaagaacagaagattgtcaagaaggttttgaagattcagaagtccaagga 334
Score = 40.1 bits (20), Expect = 0.11
Identities = 38/44 (86%)
Strand = Plus / Plus
Query: 212 atccaaggaattccacacctgagacctgctgagtacaagaggtc 255
||||| || ||||| || ||||| || |||||||||||||||||
Sbjct: 144 atccatgggattccccatctgaggccagctgagtacaagaggtc 187
>gb|DR745149.1|DR745149 RTCU1_27_H05.b1_A029 Roots plus added copper Pinus taeda cDNA clone
RTCU1_27_H05_A029 3', mRNA sequence
Length = 577
Score = 48.1 bits (24), Expect = 4e-004
Identities = 48/56 (85%)
Strand = Plus / Plus
Query: 347 ttggttgaggaacagaagatagtgaagaaggtgttgaagatccaaaagaccaagga 402
||||| || ||||||||||| || |||||||| |||||||| || ||| |||||||
Sbjct: 235 ttggtagaagaacagaagattgtcaagaaggttttgaagattcagaagtccaagga 290
Score = 40.1 bits (20), Expect = 0.11
Identities = 38/44 (86%)
Strand = Plus / Plus
Query: 212 atccaaggaattccacacctgagacctgctgagtacaagaggtc 255
||||| || ||||| || ||||| || |||||||||||||||||
Sbjct: 100 atccatgggattccccatctgaggccagctgagtacaagaggtc 143
>gb|DR745218.1|DR745218 RTCU1_27_H05.g1_A029 Roots plus added copper Pinus taeda cDNA clone
RTCU1_27_H05_A029 5', mRNA sequence
Length = 677
Score = 48.1 bits (24), Expect = 4e-004
Identities = 48/56 (85%)
Strand = Plus / Plus
Query: 347 ttggttgaggaacagaagatagtgaagaaggtgttgaagatccaaaagaccaagga 402
||||| || ||||||||||| || |||||||| |||||||| || ||| |||||||
Sbjct: 317 ttggtagaagaacagaagattgtcaagaaggttttgaagattcagaagtccaagga 372
Score = 40.1 bits (20), Expect = 0.11
Identities = 38/44 (86%)
Strand = Plus / Plus
Query: 212 atccaaggaattccacacctgagacctgctgagtacaagaggtc 255
||||| || ||||| || ||||| || |||||||||||||||||
Sbjct: 182 atccatgggattccccatctgaggccagctgagtacaagaggtc 225
>gb|DR088508.1|DR088508 RTAL1_2_F09.b1_A029 Roots plus added aluminum Pinus taeda cDNA
clone RTAL1_2_F09_A029 3', mRNA sequence
Length = 335
Score = 46.1 bits (23), Expect = 0.002
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 356 gaacagaagatagtgaagaaggtgttgaagatccaaaagaccaagga 402
||||||||||| || |||||||| |||||||| || ||| |||||||
Sbjct: 9 gaacagaagattgtcaagaaggttttgaagattcagaagtccaagga 55
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 62,798
Number of Sequences: 355925
Number of extensions: 62798
Number of successful extensions: 16544
Number of sequences better than 0.5: 86
Number of HSP's better than 0.5 without gapping: 86
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 16388
Number of HSP's gapped (non-prelim): 156
length of query: 644
length of database: 217,277,237
effective HSP length: 19
effective length of query: 625
effective length of database: 210,514,662
effective search space: 131571663750
effective search space used: 131571663750
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)