BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2192909.2.3
(674 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BF516773.1|BF516773 NXSI_003_B11_F NXSI (Nsf Xylem Side ... 40 0.11
gb|BM158914.1|BM158914 NXLV_041_D01_F NXLV (Nsf Xylem Late ... 40 0.11
gb|CF388135.1|CF388135 RTDR2_1_H07.b1_A021 Loblolly pine ro... 40 0.11
gb|CF477819.1|CF477819 RTWW3_13_F12.b1_A022 Well-watered lo... 40 0.11
gb|CF478957.1|CF478957 RTWW3_21_C10.b1_A022 Well-watered lo... 40 0.11
gb|CO162271.1|CO162271 FLD1_34_F09.b1_A029 Root flooded Pin... 40 0.11
gb|CO162352.1|CO162352 FLD1_34_F09.g1_A029 Root flooded Pin... 40 0.11
gb|CO173975.1|CO173975 NDL1_40_G05.g1_A029 Needles control ... 40 0.11
gb|CO175243.1|CO175243 NDL1_53_A10.g1_A029 Needles control ... 40 0.11
gb|CX646520.1|CX646520 COLD1_9_H01.g1_A029 Root cold Pinus ... 40 0.11
gb|CX647330.1|CX647330 COLD1_15_G09.b1_A029 Root cold Pinus... 40 0.11
gb|CX648030.1|CX648030 COLD1_26_C06.b1_A029 Root cold Pinus... 40 0.11
gb|CX651603.1|CX651603 COLD1_53_C02.g1_A029 Root cold Pinus... 40 0.11
gb|CX653031.1|CX653031 COLD1_63_A10.b1_A029 Root cold Pinus... 40 0.11
gb|CX653109.1|CX653109 COLD1_63_A10.g1_A029 Root cold Pinus... 40 0.11
gb|DR011092.1|DR011092 HEAT1_3_H07.b1_A029 Root at 37 C for... 40 0.11
gb|DR015347.1|DR015347 STRS1_3_A05.b1_A034 Shoot tip pitch ... 40 0.11
gb|DR015421.1|DR015421 STRS1_3_A05.g1_A034 Shoot tip pitch ... 40 0.11
gb|DR017124.1|DR017124 STRS1_14_E09.b1_A034 Shoot tip pitch... 40 0.11
gb|DR023804.1|DR023804 STRS1_60_E01.b1_A034 Shoot tip pitch... 40 0.11
gb|DR025455.1|DR025455 STRS1_71_E09.g1_A034 Shoot tip pitch... 40 0.11
gb|DR057315.1|DR057315 RTNIT1_5_C05.b1_A029 Roots minus nit... 40 0.11
gb|DR068582.1|DR068582 RTDK1_1_E01.g1_A029 Roots, dark Pinu... 40 0.11
gb|DR071353.1|DR071353 RTDK1_19_G05.b1_A029 Roots, dark Pin... 40 0.11
gb|DR072066.1|DR072066 RTDK1_23_H03.g1_A029 Roots, dark Pin... 40 0.11
gb|DR080794.1|DR080794 RTFEPL1_25_F08.b1_A029 Roots plus ad... 40 0.11
gb|DR101310.1|DR101310 STRR1_72_B03.b1_A033 Stem Response R... 40 0.11
gb|DR101998.1|DR101998 STRR1_77_H06.b1_A033 Stem Response R... 40 0.11
gb|DR118289.1|DR118289 RTMG1_12_H02.b1_A029 Roots minus mag... 40 0.11
gb|DR118474.1|DR118474 RTMG1_17_F04.b1_A029 Roots minus mag... 40 0.11
gb|DR118553.1|DR118553 RTMG1_17_F04.g1_A029 Roots minus mag... 40 0.11
gb|DR388885.1|DR388885 RTHG1_31_C03.b1_A029 Roots plus adde... 40 0.11
dbj|BD224468.1| Materials and methods for the modification ... 40 0.11
emb|AJ297297.1|PPI297297 Pinus pinaster partial mRNA for ca... 40 0.11
gb|BX678762.1|BX678762 BX678762 RS Pinus pinaster cDNA clon... 38 0.45
gb|BX678852.1|BX678852 BX678852 RS Pinus pinaster cDNA clon... 38 0.45
>gb|BF516773.1|BF516773 NXSI_003_B11_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_003_B11 5' similar to Arabidopsis thaliana
sequence At1g63140 caffeic O-methyltransferase, putative
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 402
Score = 40.1 bits (20), Expect = 0.11
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 630 ccagtcgtggaggatccacttcat 653
|||||| |||||||||||||||||
Sbjct: 66 ccagtcatggaggatccacttcat 43
>gb|BM158914.1|BM158914 NXLV_041_D01_F NXLV (Nsf Xylem Late wood Vertical) Pinus taeda cDNA
clone NXLV_041_D01 5', mRNA sequence
Length = 300
Score = 40.1 bits (20), Expect = 0.11
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 288 ccaagcaagcaagcatgcat 307
||||||||||||||||||||
Sbjct: 79 ccaagcaagcaagcatgcat 60
>gb|CF388135.1|CF388135 RTDR2_1_H07.b1_A021 Loblolly pine roots recovering from drought DR2
Pinus taeda cDNA clone RTDR2_1_H07_A021 3', mRNA
sequence
Length = 644
Score = 40.1 bits (20), Expect = 0.11
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 630 ccagtcgtggaggatccacttcat 653
|||||| |||||||||||||||||
Sbjct: 311 ccagtcatggaggatccacttcat 334
>gb|CF477819.1|CF477819 RTWW3_13_F12.b1_A022 Well-watered loblolly pine roots WW3 Pinus
taeda cDNA clone RTWW3_13_F12_A022 3', mRNA sequence
Length = 496
Score = 40.1 bits (20), Expect = 0.11
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 630 ccagtcgtggaggatccacttcat 653
|||||| |||||||||||||||||
Sbjct: 46 ccagtcatggaggatccacttcat 23
>gb|CF478957.1|CF478957 RTWW3_21_C10.b1_A022 Well-watered loblolly pine roots WW3 Pinus
taeda cDNA clone RTWW3_21_C10_A022 3', mRNA sequence
Length = 733
Score = 40.1 bits (20), Expect = 0.11
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 288 ccaagcaagcaagcatgcat 307
||||||||||||||||||||
Sbjct: 475 ccaagcaagcaagcatgcat 456
>gb|CO162271.1|CO162271 FLD1_34_F09.b1_A029 Root flooded Pinus taeda cDNA clone
FLD1_34_F09_A029 3', mRNA sequence
Length = 705
Score = 40.1 bits (20), Expect = 0.11
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 288 ccaagcaagcaagcatgcat 307
||||||||||||||||||||
Sbjct: 482 ccaagcaagcaagcatgcat 463
>gb|CO162352.1|CO162352 FLD1_34_F09.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_34_F09_A029 5', mRNA sequence
Length = 826
Score = 40.1 bits (20), Expect = 0.11
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 288 ccaagcaagcaagcatgcat 307
||||||||||||||||||||
Sbjct: 695 ccaagcaagcaagcatgcat 676
>gb|CO173975.1|CO173975 NDL1_40_G05.g1_A029 Needles control Pinus taeda cDNA clone
NDL1_40_G05_A029 5', mRNA sequence
Length = 574
Score = 40.1 bits (20), Expect = 0.11
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 630 ccagtcgtggaggatccacttcat 653
|||||| |||||||||||||||||
Sbjct: 29 ccagtcatggaggatccacttcat 6
>gb|CO175243.1|CO175243 NDL1_53_A10.g1_A029 Needles control Pinus taeda cDNA clone
NDL1_53_A10_A029 5', mRNA sequence
Length = 837
Score = 40.1 bits (20), Expect = 0.11
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 630 ccagtcgtggaggatccacttcat 653
|||||| |||||||||||||||||
Sbjct: 540 ccagtcatggaggatccacttcat 563
>gb|CX646520.1|CX646520 COLD1_9_H01.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_9_H01_A029 5', mRNA sequence
Length = 830
Score = 40.1 bits (20), Expect = 0.11
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 630 ccagtcgtggaggatccacttcat 653
|||||| |||||||||||||||||
Sbjct: 461 ccagtcatggaggatccacttcat 484
>gb|CX647330.1|CX647330 COLD1_15_G09.b1_A029 Root cold Pinus taeda cDNA clone
COLD1_15_G09_A029 3', mRNA sequence
Length = 687
Score = 40.1 bits (20), Expect = 0.11
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 630 ccagtcgtggaggatccacttcat 653
|||||| |||||||||||||||||
Sbjct: 197 ccagtcatggaggatccacttcat 174
>gb|CX648030.1|CX648030 COLD1_26_C06.b1_A029 Root cold Pinus taeda cDNA clone
COLD1_26_C06_A029 3', mRNA sequence
Length = 820
Score = 40.1 bits (20), Expect = 0.11
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 630 ccagtcgtggaggatccacttcat 653
|||||| |||||||||||||||||
Sbjct: 365 ccagtcatggaggatccacttcat 342
>gb|CX651603.1|CX651603 COLD1_53_C02.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_53_C02_A029 5', mRNA sequence
Length = 816
Score = 40.1 bits (20), Expect = 0.11
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 630 ccagtcgtggaggatccacttcat 653
|||||| |||||||||||||||||
Sbjct: 735 ccagtcatggaggatccacttcat 712
>gb|CX653031.1|CX653031 COLD1_63_A10.b1_A029 Root cold Pinus taeda cDNA clone
COLD1_63_A10_A029 3', mRNA sequence
Length = 809
Score = 40.1 bits (20), Expect = 0.11
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 630 ccagtcgtggaggatccacttcat 653
|||||| |||||||||||||||||
Sbjct: 238 ccagtcatggaggatccacttcat 215
>gb|CX653109.1|CX653109 COLD1_63_A10.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_63_A10_A029 5', mRNA sequence
Length = 895
Score = 40.1 bits (20), Expect = 0.11
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 630 ccagtcgtggaggatccacttcat 653
|||||| |||||||||||||||||
Sbjct: 893 ccagtcatggaggatccacttcat 870
>gb|DR011092.1|DR011092 HEAT1_3_H07.b1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_3_H07_A029 3', mRNA sequence
Length = 730
Score = 40.1 bits (20), Expect = 0.11
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 288 ccaagcaagcaagcatgcat 307
||||||||||||||||||||
Sbjct: 502 ccaagcaagcaagcatgcat 483
>gb|DR015347.1|DR015347 STRS1_3_A05.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_3_A05_A034 3', mRNA sequence
Length = 884
Score = 40.1 bits (20), Expect = 0.11
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 630 ccagtcgtggaggatccacttcat 653
|||||| |||||||||||||||||
Sbjct: 302 ccagtcatggaggatccacttcat 279
>gb|DR015421.1|DR015421 STRS1_3_A05.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_3_A05_A034 5', mRNA sequence
Length = 900
Score = 40.1 bits (20), Expect = 0.11
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 630 ccagtcgtggaggatccacttcat 653
|||||| |||||||||||||||||
Sbjct: 310 ccagtcatggaggatccacttcat 287
>gb|DR017124.1|DR017124 STRS1_14_E09.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_14_E09_A034 3', mRNA sequence
Length = 666
Score = 40.1 bits (20), Expect = 0.11
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 630 ccagtcgtggaggatccacttcat 653
|||||| |||||||||||||||||
Sbjct: 95 ccagtcatggaggatccacttcat 72
>gb|DR023804.1|DR023804 STRS1_60_E01.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_60_E01_A034 3', mRNA sequence
Length = 830
Score = 40.1 bits (20), Expect = 0.11
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 288 ccaagcaagcaagcatgcat 307
||||||||||||||||||||
Sbjct: 630 ccaagcaagcaagcatgcat 611
>gb|DR025455.1|DR025455 STRS1_71_E09.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_71_E09_A034 5', mRNA sequence
Length = 665
Score = 40.1 bits (20), Expect = 0.11
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 630 ccagtcgtggaggatccacttcat 653
|||||| |||||||||||||||||
Sbjct: 292 ccagtcatggaggatccacttcat 315
>gb|DR057315.1|DR057315 RTNIT1_5_C05.b1_A029 Roots minus nitrogen Pinus taeda cDNA clone
RTNIT1_5_C05_A029 3', mRNA sequence
Length = 812
Score = 40.1 bits (20), Expect = 0.11
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 630 ccagtcgtggaggatccacttcat 653
|||||| |||||||||||||||||
Sbjct: 240 ccagtcatggaggatccacttcat 217
>gb|DR068582.1|DR068582 RTDK1_1_E01.g1_A029 Roots, dark Pinus taeda cDNA clone
RTDK1_1_E01_A029 5', mRNA sequence
Length = 437
Score = 40.1 bits (20), Expect = 0.11
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 630 ccagtcgtggaggatccacttcat 653
|||||| |||||||||||||||||
Sbjct: 355 ccagtcatggaggatccacttcat 378
>gb|DR071353.1|DR071353 RTDK1_19_G05.b1_A029 Roots, dark Pinus taeda cDNA clone
RTDK1_19_G05_A029 3', mRNA sequence
Length = 743
Score = 40.1 bits (20), Expect = 0.11
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 630 ccagtcgtggaggatccacttcat 653
|||||| |||||||||||||||||
Sbjct: 404 ccagtcatggaggatccacttcat 381
>gb|DR072066.1|DR072066 RTDK1_23_H03.g1_A029 Roots, dark Pinus taeda cDNA clone
RTDK1_23_H03_A029 5', mRNA sequence
Length = 741
Score = 40.1 bits (20), Expect = 0.11
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 630 ccagtcgtggaggatccacttcat 653
|||||| |||||||||||||||||
Sbjct: 316 ccagtcatggaggatccacttcat 293
>gb|DR080794.1|DR080794 RTFEPL1_25_F08.b1_A029 Roots plus added iron Pinus taeda cDNA clone
RTFEPL1_25_F08_A029 3', mRNA sequence
Length = 673
Score = 40.1 bits (20), Expect = 0.11
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 630 ccagtcgtggaggatccacttcat 653
|||||| |||||||||||||||||
Sbjct: 261 ccagtcatggaggatccacttcat 238
>gb|DR101310.1|DR101310 STRR1_72_B03.b1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_72_B03_A033 3', mRNA sequence
Length = 734
Score = 40.1 bits (20), Expect = 0.11
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 630 ccagtcgtggaggatccacttcat 653
|||||| |||||||||||||||||
Sbjct: 286 ccagtcatggaggatccacttcat 263
>gb|DR101998.1|DR101998 STRR1_77_H06.b1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_77_H06_A033 3', mRNA sequence
Length = 826
Score = 40.1 bits (20), Expect = 0.11
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 630 ccagtcgtggaggatccacttcat 653
|||||| |||||||||||||||||
Sbjct: 284 ccagtcatggaggatccacttcat 261
>gb|DR118289.1|DR118289 RTMG1_12_H02.b1_A029 Roots minus magnesium Pinus taeda cDNA clone
RTMG1_12_H02_A029 3', mRNA sequence
Length = 706
Score = 40.1 bits (20), Expect = 0.11
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 630 ccagtcgtggaggatccacttcat 653
|||||| |||||||||||||||||
Sbjct: 134 ccagtcatggaggatccacttcat 111
>gb|DR118474.1|DR118474 RTMG1_17_F04.b1_A029 Roots minus magnesium Pinus taeda cDNA clone
RTMG1_17_F04_A029 3', mRNA sequence
Length = 775
Score = 40.1 bits (20), Expect = 0.11
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 630 ccagtcgtggaggatccacttcat 653
|||||| |||||||||||||||||
Sbjct: 326 ccagtcatggaggatccacttcat 303
>gb|DR118553.1|DR118553 RTMG1_17_F04.g1_A029 Roots minus magnesium Pinus taeda cDNA clone
RTMG1_17_F04_A029 5', mRNA sequence
Length = 607
Score = 40.1 bits (20), Expect = 0.11
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 630 ccagtcgtggaggatccacttcat 653
|||||| |||||||||||||||||
Sbjct: 515 ccagtcatggaggatccacttcat 492
>gb|DR388885.1|DR388885 RTHG1_31_C03.b1_A029 Roots plus added mercury Pinus taeda cDNA
clone RTHG1_31_C03_A029 3', mRNA sequence
Length = 793
Score = 40.1 bits (20), Expect = 0.11
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 288 ccaagcaagcaagcatgcat 307
||||||||||||||||||||
Sbjct: 41 ccaagcaagcaagcatgcat 60
>dbj|BD224468.1| Materials and methods for the modification of plant lignin content
Length = 682
Score = 40.1 bits (20), Expect = 0.11
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 630 ccagtcgtggaggatccacttcat 653
|||||| |||||||||||||||||
Sbjct: 199 ccagtcatggaggatccacttcat 176
>emb|AJ297297.1|PPI297297 Pinus pinaster partial mRNA for caffeic acid O-methyltransferase
(comt gene)
Length = 946
Score = 40.1 bits (20), Expect = 0.11
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 630 ccagtcgtggaggatccacttcat 653
|||||| |||||||||||||||||
Sbjct: 777 ccagtcatggaggatccacttcat 754
>gb|BX678762.1|BX678762 BX678762 RS Pinus pinaster cDNA clone RS14G09, mRNA sequence
Length = 549
Score = 38.2 bits (19), Expect = 0.45
Identities = 37/43 (86%)
Strand = Plus / Minus
Query: 623 cgtcgctccagtcgtggaggatccacttcatgaggatggcgtc 665
|||||| |||||| || | |||||||||||||| ||||||||
Sbjct: 261 cgtcgccccagtcatgcatgatccacttcatgaatatggcgtc 219
>gb|BX678852.1|BX678852 BX678852 RS Pinus pinaster cDNA clone RS16A04, mRNA sequence
Length = 591
Score = 38.2 bits (19), Expect = 0.45
Identities = 37/43 (86%)
Strand = Plus / Minus
Query: 623 cgtcgctccagtcgtggaggatccacttcatgaggatggcgtc 665
|||||| |||||| || | |||||||||||||| ||||||||
Sbjct: 261 cgtcgccccagtcatgcatgatccacttcatgaatatggcgtc 219
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 73,086
Number of Sequences: 355925
Number of extensions: 73086
Number of successful extensions: 23148
Number of sequences better than 0.5: 36
Number of HSP's better than 0.5 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 23110
Number of HSP's gapped (non-prelim): 38
length of query: 674
length of database: 217,277,237
effective HSP length: 19
effective length of query: 655
effective length of database: 210,514,662
effective search space: 137887103610
effective search space used: 137887103610
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)