BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2161272.2.28
(3878 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AW985238.1|AW985238 NXNV_132_G11_F Nsf Xylem Normal wood... 176 4e-042
dbj|BD235986.1| Materials and method for modification of pl... 165 2e-038
gb|AY789651.1| Pinus taeda cellulose synthase catalytic sub... 165 2e-038
gb|AY262817.1| Pinus radiata cellulose synthase (CesA6) mRN... 165 2e-038
gb|AY262818.1| Pinus radiata cellulose synthase (CesA7) mRN... 165 2e-038
gb|AY262819.1| Pinus radiata cellulose synthase (CesA8) mRN... 165 2e-038
gb|DR080401.1|DR080401 RTFEPL1_22_A02.g1_A029 Roots plus ad... 159 1e-036
gb|AY789650.1| Pinus taeda cellulose synthase catalytic sub... 145 2e-032
gb|AY262821.1| Pinus radiata cellulose synthase (CesA2) mRN... 143 6e-032
gb|DR744890.1|DR744890 RTCU1_25_C12.g1_A029 Roots plus adde... 135 2e-029
gb|AY262816.1| Pinus radiata cellulose synthase (CesA5) mRN... 135 2e-029
gb|AY262820.1| Pinus radiata cellulose synthase (CesA10) mR... 135 2e-029
gb|BF517368.1|BF517368 NXSI_013_F11_F NXSI (Nsf Xylem Side ... 127 4e-027
dbj|BD236020.1| Materials and method for modification of pl... 125 1e-026
gb|AY789652.1| Pinus taeda cellulose synthase catalytic sub... 125 1e-026
gb|BG317558.1|BG317558 NXPV_003_B08_F NXPV (Nsf Xylem Plani... 119 9e-025
gb|AY639654.1| Pinus radiata cellulose synthase catalytic s... 119 9e-025
gb|BG275715.1|BG275715 NXSI_145_B01_F NXSI (Nsf Xylem Side ... 117 4e-024
gb|BI202889.1|BI202889 NXPV_091_H09_F NXPV (Nsf Xylem Plani... 117 4e-024
gb|BX000643.1|BX000643 BX000643 Pinus pinaster xylem Pinus ... 113 6e-023
gb|BX249248.1|BX249248 BX249248 Pinus pinaster differenciat... 111 2e-022
gb|DR059426.1|DR059426 RTNIT1_17_D03.g1_A029 Roots minus ni... 111 2e-022
gb|AW984889.1|AW984889 NXNV_100_C02_F Nsf Xylem Normal wood... 107 3e-021
gb|BQ196805.1|BQ196805 NXLV105_E07_F NXLV (Nsf Xylem Late w... 107 3e-021
gb|BX682714.1|BX682714 BX682714 Pinus pinaster differenciat... 107 3e-021
gb|CO201610.1|CO201610 RTCNT2_7_A01.b1_A029 Root control 2 ... 107 3e-021
gb|CO369942.1|CO369942 RTK1_55_A04.g1_A029 Roots minus pota... 107 3e-021
gb|DR686101.1|DR686101 EST1076179 Normalized pine embryo li... 107 3e-021
gb|AW985306.1|AW985306 NXNV_135_F04_F Nsf Xylem Normal wood... 105 1e-020
gb|DR384721.1|DR384721 RTHG1_4_D04.b1_A029 Roots plus added... 105 1e-020
gb|BV079717.1| Pp_CesA7 Pinus pinaster megagametophytes Pin... 94 5e-017
gb|BF186171.1|BF186171 NXCI_133_H05_F NXCI (Nsf Xylem Compr... 90 8e-016
gb|CF672886.1|CF672886 RTCNT1_74_D05.g1_A029 Root control P... 90 8e-016
gb|CX646526.1|CX646526 COLD1_9_H07.g1_A029 Root cold Pinus ... 90 8e-016
gb|DR054410.1|DR054410 RTCA1_17_D10.b1_A029 Roots minus cal... 90 8e-016
gb|DR110920.1|DR110920 RTS1_14_B08.b1_A029 Roots minus sulf... 90 8e-016
dbj|BD235989.1| Materials and method for modification of pl... 90 8e-016
gb|DR118589.1|DR118589 RTMG1_18_A07.b1_A029 Roots minus mag... 88 3e-015
gb|DR162195.1|DR162195 RTFE1_16_G12.b1_A029 Roots minus iro... 88 3e-015
gb|CO169549.1|CO169549 NDL1_7_F09.g1_A029 Needles control P... 84 5e-014
gb|CF478733.1|CF478733 RTWW3_16_G10.g1_A022 Well-watered lo... 82 2e-013
gb|CV031645.1|CV031645 RTNACL1_2_G07.g1_A029 Roots plus add... 82 2e-013
gb|DR096307.1|DR096307 STRR1_27_D08.b1_A033 Stem Response R... 82 2e-013
gb|DR096386.1|DR096386 STRR1_27_D08.g1_A033 Stem Response R... 82 2e-013
gb|DR101934.1|DR101934 STRR1_76_G04.g1_A033 Stem Response R... 82 2e-013
gb|AW056552.1|AW056552 ST51E06 Pine TriplEx shoot tip libra... 80 8e-013
gb|BE996873.1|BE996873 NXCI_103_E08_F NXCI (Nsf Xylem Compr... 80 8e-013
gb|BV079716.1| Pp_CesA4 Pinus pinaster megagametophytes Pin... 80 8e-013
gb|BX249614.1|BX249614 BX249614 Pinus pinaster differenciat... 78 3e-012
gb|BX254022.1|BX254022 BX254022 Pinus pinaster differenciat... 78 3e-012
gb|BE209216.1|BE209216 NXNV_147_D10_F Nsf Xylem Normal wood... 78 3e-012
gb|BE657157.1|BE657157 NXCI_064_G04_F NXCI (Nsf Xylem Compr... 78 3e-012
gb|DR687054.1|DR687054 EST1077132 Normalized pine embryo li... 78 3e-012
gb|DT633819.1|DT633819 EST1148750 Normalized pine embryo li... 78 3e-012
gb|AW064806.1|AW064806 ST36A06 Pine TriplEx shoot tip libra... 76 1e-011
gb|BE187012.1|BE187012 NXNV_157_H10_F Nsf Xylem Normal wood... 76 1e-011
gb|AL749837.1|AL749837 AL749837 AS Pinus pinaster cDNA clon... 74 5e-011
gb|BV102457.1| AY531556.SNP2 Pinus pinaster megagametophyte... 74 5e-011
gb|AY531556.1| Pinus pinaster putative cellulose synthase g... 74 5e-011
gb|AI812887.1|AI812887 22B3 Pine Lambda Zap Xylem library P... 70 7e-010
gb|AW698053.1|AW698053 NXNV_072_F12_F Nsf Xylem Normal wood... 70 7e-010
gb|BE209203.1|BE209203 NXNV_147_C08_F Nsf Xylem Normal wood... 70 7e-010
gb|BF610475.1|BF610475 NXSI_058_H08_F NXSI (Nsf Xylem Side ... 70 7e-010
gb|BG039408.1|BG039408 NXSI_098_F10_F NXSI (Nsf Xylem Side ... 70 7e-010
gb|BG275945.1|BG275945 NXSI_149_G12_F NXSI (Nsf Xylem Side ... 70 7e-010
gb|BQ702475.1|BQ702475 NXSI_129_A10_F NXSI (Nsf Xylem Side ... 70 7e-010
gb|BQ702504.1|BQ702504 NXSI_129_D04_F NXSI (Nsf Xylem Side ... 70 7e-010
gb|CF478399.1|CF478399 RTWW3_18_G11.g1_A022 Well-watered lo... 70 7e-010
gb|CF666095.1|CF666095 RTCNT1_20_E07.g1_A029 Root control P... 70 7e-010
gb|CO168623.1|CO168623 NDL1_1_A02.g1_A029 Needles control P... 70 7e-010
gb|DR169086.1|DR169086 RTPHOS1_30_A02.b1_A029 Roots minus p... 70 7e-010
gb|DR684943.1|DR684943 EST1075020 Normalized pine embryo li... 70 7e-010
gb|DT632612.1|DT632612 EST1147543 Normalized pine embryo li... 70 7e-010
gb|AY262815.1| Pinus radiata cellulose synthase (CesA3) mRN... 70 7e-010
gb|BQ701215.1|BQ701215 NXSI_023_H05_F NXSI (Nsf Xylem Side ... 68 3e-009
gb|BV079715.1| Pp_CesA3 Pinus pinaster megagametophytes Pin... 68 3e-009
gb|BX784298.1|BX784298 BX784298 Pinus pinaster differenciat... 66 1e-008
gb|BX250234.1|BX250234 BX250234 Pinus pinaster differenciat... 64 5e-008
gb|AW870284.1|AW870284 NXNV_128_H04_F Nsf Xylem Normal wood... 64 5e-008
gb|BE656835.1|BE656835 NXCI_040_B06_F NXCI (Nsf Xylem Compr... 64 5e-008
gb|BF010934.1|BF010934 NXCI_094_H06_F NXCI (Nsf Xylem Compr... 64 5e-008
gb|CD017522.1|CD017522 NXCI_124_B01_F NXCI (Nsf Xylem Compr... 64 5e-008
gb|CF478017.1|CF478017 RTWW3_17_B06.g1_A022 Well-watered lo... 64 5e-008
gb|AA556746.1|AA556746 588 Loblolly pine NA Pinus taeda cDN... 62 2e-007
gb|AW010875.1|AW010875 ST12E01 Pine TriplEx shoot tip libra... 62 2e-007
gb|CF396363.1|CF396363 RTDS2_21_F06.g1_A021 Drought-stresse... 62 2e-007
gb|AL750979.1|AL750979 AL750979 RS Pinus pinaster cDNA clon... 60 7e-007
gb|BE520100.1|BE520100 NXCI_016_G11_F NXCI (Nsf Xylem Compr... 60 7e-007
gb|DR020730.1|DR020730 STRS1_38_H10.g1_A034 Shoot tip pitch... 60 7e-007
gb|AW011234.1|AW011234 ST18D02 Pine TriplEx shoot tip libra... 58 3e-006
gb|AW289623.1|AW289623 NXNV003H02F Nsf Xylem Normal wood Ve... 58 3e-006
gb|BX250396.1|BX250396 BX250396 Pinus pinaster differenciat... 58 3e-006
gb|BX252761.1|BX252761 BX252761 Pinus pinaster differenciat... 58 3e-006
gb|BX255542.1|BX255542 BX255542 Pinus pinaster differenciat... 58 3e-006
gb|CD028231.1|CD028231 NXNV003H02 Nsf Xylem Normal wood Ver... 58 3e-006
gb|CO369344.1|CO369344 RTK1_46_B01.g1_A029 Roots minus pota... 58 3e-006
gb|DR110657.1|DR110657 RTS1_12_E03.b1_A029 Roots minus sulf... 58 3e-006
gb|DR110744.1|DR110744 RTS1_12_E03.g1_A029 Roots minus sulf... 58 3e-006
gb|AH014290.1|SEG_AY764673S Pinus taeda isolate 11 cellulos... 58 3e-006
gb|AY764673.1|AY764673S1 Pinus taeda isolate 11 cellulose s... 58 3e-006
gb|AH014291.1|SEG_AY764675S Pinus taeda isolate 16 cellulos... 58 3e-006
gb|AY764675.1|AY764675S1 Pinus taeda isolate 16 cellulose s... 58 3e-006
gb|AH014292.1|SEG_AY764677S Pinus taeda isolate 25 cellulos... 58 3e-006
gb|AY764677.1|AY764677S1 Pinus taeda isolate 25 cellulose s... 58 3e-006
gb|AH014293.1|SEG_AY764679S Pinus taeda isolate 7 cellulose... 58 3e-006
gb|AY764679.1|AY764679S1 Pinus taeda isolate 7 cellulose sy... 58 3e-006
gb|AH014294.1|SEG_AY764681S Pinus taeda isolate 6 cellulose... 58 3e-006
gb|AY764681.1|AY764681S1 Pinus taeda isolate 6 cellulose sy... 58 3e-006
gb|AH014295.1|SEG_AY764683S Pinus taeda isolate 4 cellulose... 58 3e-006
gb|AY764683.1|AY764683S1 Pinus taeda isolate 4 cellulose sy... 58 3e-006
gb|AH014296.1|SEG_AY764685S Pinus taeda isolate 26 cellulos... 58 3e-006
gb|AY764685.1|AY764685S1 Pinus taeda isolate 26 cellulose s... 58 3e-006
gb|AH014297.1|SEG_AY764687S Pinus taeda isolate 9 cellulose... 58 3e-006
gb|AY764687.1|AY764687S1 Pinus taeda isolate 9 cellulose sy... 58 3e-006
gb|AH014298.1|SEG_AY764689S Pinus taeda isolate 23 cellulos... 58 3e-006
gb|AY764689.1|AY764689S1 Pinus taeda isolate 23 cellulose s... 58 3e-006
gb|AH014299.1|SEG_AY764691S Pinus taeda isolate 13 cellulos... 58 3e-006
gb|AY764691.1|AY764691S1 Pinus taeda isolate 13 cellulose s... 58 3e-006
gb|AH014300.1|SEG_AY764693S Pinus taeda isolate 30 cellulos... 58 3e-006
gb|AY764693.1|AY764693S1 Pinus taeda isolate 30 cellulose s... 58 3e-006
gb|AH014301.1|SEG_AY764695S Pinus taeda isolate 22 cellulos... 58 3e-006
gb|AY764695.1|AY764695S1 Pinus taeda isolate 22 cellulose s... 58 3e-006
gb|AH014302.1|SEG_AY764697S Pinus taeda isolate 32 cellulos... 58 3e-006
gb|AY764697.1|AY764697S1 Pinus taeda isolate 32 cellulose s... 58 3e-006
gb|AH014303.1|SEG_AY764699S Pinus taeda isolate 18 cellulos... 58 3e-006
gb|AY764699.1|AY764699S1 Pinus taeda isolate 18 cellulose s... 58 3e-006
gb|AH014304.1|SEG_AY764701S Pinus taeda isolate 10 cellulos... 58 3e-006
gb|AY764701.1|AY764701S1 Pinus taeda isolate 10 cellulose s... 58 3e-006
gb|AH014305.1|SEG_AY764703S Pinus taeda isolate 14 cellulos... 58 3e-006
gb|AY764703.1|AY764703S1 Pinus taeda isolate 14 cellulose s... 58 3e-006
gb|AH014306.1|SEG_AY764705S Pinus taeda isolate 21 cellulos... 58 3e-006
gb|AY764705.1|AY764705S1 Pinus taeda isolate 21 cellulose s... 58 3e-006
gb|AH014307.1|SEG_AY764707S Pinus taeda isolate 31 cellulos... 58 3e-006
gb|AY764707.1|AY764707S1 Pinus taeda isolate 31 cellulose s... 58 3e-006
gb|AH014308.1|SEG_AY764709S Pinus taeda isolate 5 cellulose... 58 3e-006
gb|AY764709.1|AY764709S1 Pinus taeda isolate 5 cellulose sy... 58 3e-006
gb|AH014309.1|SEG_AY764711S Pinus taeda isolate 2 cellulose... 58 3e-006
gb|AY764711.1|AY764711S1 Pinus taeda isolate 2 cellulose sy... 58 3e-006
gb|AH014310.1|SEG_AY764713S Pinus taeda isolate 3 cellulose... 58 3e-006
gb|AY764713.1|AY764713S1 Pinus taeda isolate 3 cellulose sy... 58 3e-006
gb|AH014311.1|SEG_AY764715S Pinus taeda isolate 19 cellulos... 58 3e-006
gb|AY764715.1|AY764715S1 Pinus taeda isolate 19 cellulose s... 58 3e-006
gb|AH014312.1|SEG_AY764717S Pinus taeda isolate 28 cellulos... 58 3e-006
gb|AY764717.1|AY764717S1 Pinus taeda isolate 28 cellulose s... 58 3e-006
gb|AH014313.1|SEG_AY764719S Pinus taeda isolate 17 cellulos... 58 3e-006
gb|AY764719.1|AY764719S1 Pinus taeda isolate 17 cellulose s... 58 3e-006
gb|AH014314.1|SEG_AY764721S Pinus taeda isolate 8 cellulose... 58 3e-006
gb|AY764721.1|AY764721S1 Pinus taeda isolate 8 cellulose sy... 58 3e-006
gb|AH014315.1|SEG_AY764723S Pinus taeda isolate 15 cellulos... 58 3e-006
gb|AY764723.1|AY764723S1 Pinus taeda isolate 15 cellulose s... 58 3e-006
gb|AH014316.1|SEG_AY764725S Pinus taeda isolate 1 cellulose... 58 3e-006
gb|AY764725.1|AY764725S1 Pinus taeda isolate 1 cellulose sy... 58 3e-006
gb|AH014317.1|SEG_AY764727S Pinus taeda isolate 29 cellulos... 58 3e-006
gb|AY764727.1|AY764727S1 Pinus taeda isolate 29 cellulose s... 58 3e-006
gb|AH014318.1|SEG_AY764729S Pinus taeda isolate 20 cellulos... 58 3e-006
gb|AY764729.1|AY764729S1 Pinus taeda isolate 20 cellulose s... 58 3e-006
gb|AH014319.1|SEG_AY764731S Pinus taeda isolate 27 cellulos... 58 3e-006
gb|AY764731.1|AY764731S1 Pinus taeda isolate 27 cellulose s... 58 3e-006
gb|AH014320.1|SEG_AY764733S Pinus taeda isolate 12 cellulos... 58 3e-006
gb|AY764733.1|AY764733S1 Pinus taeda isolate 12 cellulose s... 58 3e-006
gb|AH014321.1|SEG_AY764735S Pinus taeda isolate 24 cellulos... 58 3e-006
gb|AY764735.1|AY764735S1 Pinus taeda isolate 24 cellulose s... 58 3e-006
gb|BX254483.1|BX254483 BX254483 Pinus pinaster differenciat... 56 1e-005
gb|BX254948.1|BX254948 BX254948 Pinus pinaster differenciat... 56 1e-005
gb|BF220717.1|BF220717 NXCI_149_G02_F NXCI (Nsf Xylem Compr... 56 1e-005
gb|BF609565.1|BF609565 NXSI_046_C11_F NXSI (Nsf Xylem Side ... 56 1e-005
gb|BF610213.1|BF610213 NXSI_056_B10_F NXSI (Nsf Xylem Side ... 56 1e-005
gb|BF778499.1|BF778499 NXSI_085_D12_F NXSI (Nsf Xylem Side ... 56 1e-005
gb|BG040499.1|BG040499 NXSI_108_H05_F NXSI (Nsf Xylem Side ... 56 1e-005
gb|BG275218.1|BG275218 NXSI_138_C06_F NXSI (Nsf Xylem Side ... 56 1e-005
gb|CD023932.1|CD023932 NXRV_018_G08_F NXRV (Nsf Xylem Root ... 56 1e-005
gb|CD026006.1|CD026006 NXSI_094_B11_F NXSI (Nsf Xylem Side ... 56 1e-005
gb|AY262814.1| Pinus radiata cellulose synthase (CesA11) mR... 56 1e-005
gb|BF778216.1|BF778216 NXSI_083_G10_F NXSI (Nsf Xylem Side ... 54 4e-005
gb|BF778225.1|BF778225 NXSI_083_H07_F NXSI (Nsf Xylem Side ... 54 4e-005
gb|BQ698421.1|BQ698421 NXPV_069_F11_F NXPV (Nsf Xylem Plani... 54 4e-005
gb|CD022200.1|CD022200 NXPV_024_F02_F NXPV (Nsf Xylem Plani... 54 4e-005
gb|DR692054.1|DR692054 EST1082141 Normalized pine embryo li... 54 4e-005
gb|BX255349.1|BX255349 BX255349 Pinus pinaster differenciat... 52 2e-004
gb|BE457983.1|BE457983 NXCI_008_H12_F NXCI (Nsf Xylem Compr... 52 2e-004
gb|BF221043.1|BF221043 NXCI_162_E11_F NXCI (Nsf Xylem Compr... 52 2e-004
gb|BG040950.1|BG040950 NXSI_117_A06_F NXSI (Nsf Xylem Side ... 52 2e-004
gb|BG673833.1|BG673833 NXPV_075_F11_F NXPV (Nsf Xylem Plani... 52 2e-004
gb|BQ654688.1|BQ654688 NXRV084_D02_F NXRV (Nsf Xylem Root w... 52 2e-004
gb|BQ698872.1|BQ698872 NXRV116_D12_F NXRV (Nsf Xylem Root w... 52 2e-004
gb|CF390276.1|CF390276 RTDR2_18_A03.g1_A021 Loblolly pine r... 52 2e-004
gb|CF668299.1|CF668299 RTCNT1_35_D11.g1_A029 Root control P... 52 2e-004
gb|CO369260.1|CO369260 RTK1_46_B01.b1_A029 Roots minus pota... 52 2e-004
gb|AW698302.1|AW698302 NXNV_071_E11_F Nsf Xylem Normal wood... 50 7e-004
gb|AW784057.1|AW784057 NXNV_117_B10_F Nsf Xylem Normal wood... 50 7e-004
gb|BQ700148.1|BQ700148 NXRV101_G08_F NXRV (Nsf Xylem Root w... 50 7e-004
gb|BG039685.1|BG039685 NXSI_102_H08_F NXSI (Nsf Xylem Side ... 48 0.003
gb|BQ695648.1|BQ695648 NXPV_030_H04_F NXPV (Nsf Xylem Plani... 48 0.003
gb|BQ697774.1|BQ697774 NXPV_052_F10_F NXPV (Nsf Xylem Plani... 48 0.003
gb|BQ703105.1|BQ703105 NXSI_136_D09_F NXSI (Nsf Xylem Side ... 48 0.003
gb|CD016846.1|CD016846 NXCI_064_H04_F NXCI (Nsf Xylem Compr... 48 0.003
gb|CD020015.1|CD020015 NXNV017A03 Nsf Xylem Normal wood Ver... 48 0.003
gb|DR060720.1|DR060720 RTNIT1_29_C08.g1_A029 Roots minus ni... 48 0.003
gb|AY764674.1|AY764673S2 Pinus taeda isolate 11 cellulose s... 48 0.003
gb|AY764676.1|AY764675S2 Pinus taeda isolate 16 cellulose s... 48 0.003
gb|AY764678.1|AY764677S2 Pinus taeda isolate 25 cellulose s... 48 0.003
gb|AY764680.1|AY764679S2 Pinus taeda isolate 7 cellulose sy... 48 0.003
gb|AY764682.1|AY764681S2 Pinus taeda isolate 6 cellulose sy... 48 0.003
gb|AY764684.1|AY764683S2 Pinus taeda isolate 4 cellulose sy... 48 0.003
gb|AY764686.1|AY764685S2 Pinus taeda isolate 26 cellulose s... 48 0.003
gb|AY764688.1|AY764687S2 Pinus taeda isolate 9 cellulose sy... 48 0.003
gb|AY764690.1|AY764689S2 Pinus taeda isolate 23 cellulose s... 48 0.003
gb|AY764692.1|AY764691S2 Pinus taeda isolate 13 cellulose s... 48 0.003
gb|AY764694.1|AY764693S2 Pinus taeda isolate 30 cellulose s... 48 0.003
gb|AY764696.1|AY764695S2 Pinus taeda isolate 22 cellulose s... 48 0.003
gb|AY764698.1|AY764697S2 Pinus taeda isolate 32 cellulose s... 48 0.003
gb|AY764700.1|AY764699S2 Pinus taeda isolate 18 cellulose s... 48 0.003
gb|AY764702.1|AY764701S2 Pinus taeda isolate 10 cellulose s... 48 0.003
gb|AY764704.1|AY764703S2 Pinus taeda isolate 14 cellulose s... 48 0.003
gb|AY764706.1|AY764705S2 Pinus taeda isolate 21 cellulose s... 48 0.003
gb|AY764708.1|AY764707S2 Pinus taeda isolate 31 cellulose s... 48 0.003
gb|AY764710.1|AY764709S2 Pinus taeda isolate 5 cellulose sy... 48 0.003
gb|AY764712.1|AY764711S2 Pinus taeda isolate 2 cellulose sy... 48 0.003
gb|AY764714.1|AY764713S2 Pinus taeda isolate 3 cellulose sy... 48 0.003
gb|AY764716.1|AY764715S2 Pinus taeda isolate 19 cellulose s... 48 0.003
gb|AY764718.1|AY764717S2 Pinus taeda isolate 28 cellulose s... 48 0.003
gb|AY764720.1|AY764719S2 Pinus taeda isolate 17 cellulose s... 48 0.003
gb|AY764722.1|AY764721S2 Pinus taeda isolate 8 cellulose sy... 48 0.003
gb|AY764724.1|AY764723S2 Pinus taeda isolate 15 cellulose s... 48 0.003
gb|AY764726.1|AY764725S2 Pinus taeda isolate 1 cellulose sy... 48 0.003
gb|AY764728.1|AY764727S2 Pinus taeda isolate 29 cellulose s... 48 0.003
gb|AY764730.1|AY764729S2 Pinus taeda isolate 20 cellulose s... 48 0.003
gb|AY764734.1|AY764733S2 Pinus taeda isolate 12 cellulose s... 48 0.003
gb|AY764736.1|AY764735S2 Pinus taeda isolate 24 cellulose s... 48 0.003
gb|AW697996.1|AW697996 NXNV_079_C07_F Nsf Xylem Normal wood... 46 0.011
gb|BF516900.1|BF516900 NXSI_005_C02_F NXSI (Nsf Xylem Side ... 46 0.011
gb|BF609149.1|BF609149 NXSI_040_H08_F NXSI (Nsf Xylem Side ... 46 0.011
gb|BF610381.1|BF610381 NXSI_049_H06_F NXSI (Nsf Xylem Side ... 46 0.011
gb|CD024597.1|CD024597 NXRV056_C03_F NXRV (Nsf Xylem Root w... 46 0.011
gb|CD025512.1|CD025512 NXSI_059_C11_F NXSI (Nsf Xylem Side ... 46 0.011
gb|DR159855.1|DR159855 RTFE1_2_B09.b1_A029 Roots minus iron... 44 0.043
gb|DR695127.1|DR695127 EST1085220 Normalized pine embryo li... 44 0.043
gb|DT638876.1|DT638876 EST1153807 Normalized pine embryo li... 44 0.043
gb|AW042872.1|AW042872 ST26D09 Pine TriplEx shoot tip libra... 42 0.17
gb|BX254358.1|BX254358 BX254358 Pinus pinaster differenciat... 42 0.17
gb|BX255499.1|BX255499 BX255499 Pinus pinaster differenciat... 42 0.17
gb|BE451860.1|BE451860 NXCI_004_B09_F NXCI (Nsf Xylem Compr... 42 0.17
gb|BQ290464.1|BQ290464 NXRV046_E11_F NXRV (Nsf Xylem Root w... 42 0.17
gb|CD021726.1|CD021726 NXNV_159_F12_F Nsf Xylem Normal wood... 42 0.17
>gb|AW985238.1|AW985238 NXNV_132_G11_F Nsf Xylem Normal wood Vertical Pinus taeda cDNA clone
NXNV_132_G11 5' similar to Arabidopsis thaliana sequence
At4g39350 cellulose synthase catalytic subunit (Ath-A)
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 425
Score = 176 bits (89), Expect = 4e-042
Identities = 288/356 (80%)
Strand = Plus / Minus
Query: 2020 ctgaagacacatccagtacccacataaattgggccctggataccatccaaacctttcatg 2079
||||| |||||||||||||| ||||| || || | | || |||||||| |||||||
Sbjct: 361 ctgaaaacacatccagtaccaacatatatgggtcnnngaatgccatccaannctttcata 302
Query: 2080 ttgatatcgaaaaagacaacatttctgttagcatatcgatcatggcgatcaatcccatca 2139
||||||||||| || || || || | || ||||| ||||| || | |||||| ||||||
Sbjct: 301 ttgatatcgaagaaaaccacgttgcgattggcataacgatcgtgcctatcaataccatca 242
Query: 2140 aatctttgaggaaactgcacatagcaaactttctttccaagcaaaggatccatcataaaa 2199
||||| || |||||||||||||| || ||||||||||||| |||||||||||| |||
Sbjct: 241 aatctctgtggaaactgcacataacagactttctttccaacagtaggatccatcatgaaa 182
Query: 2200 cacattgcttcctttatagccttactattattgatatagtgatcacaatccaagttcagc 2259
||||| | ||| || ||||||||||| || ||||| |||||||||||||||||||||
Sbjct: 181 cacatggattcacgaattgccttactattgtttatataatgatcacaatccaagttcagc 122
Query: 2260 aaataaggagcattagttagtacagcagagactcggaccaatgcattcatagcaccagcc 2319
| |||||||||||| || || ||||| |||||||| ||||| | |||||| || || ||
Sbjct: 121 atataaggagcatttgtaagaacagccgagactcgaaccaaagaattcattgcgcctgct 62
Query: 2320 ttcttgtgatggttgtagcctggccgtttttctcttgaaacataaaccaatcgagg 2375
||||| ||||| ||| | || || | |||||||| |||||||| ||||| |||||
Sbjct: 61 ttcttatgatgattgaatccaggtctcttttctctagaaacatagaccaagcgagg 6
>dbj|BD235986.1| Materials and method for modification of plant cell wall
polysaccharides
Length = 383
Score = 165 bits (83), Expect = 2e-038
Identities = 245/299 (81%)
Strand = Plus / Minus
Query: 2029 catccagtacccacataaattgggccctggataccatccaaacctttcatgttgatatcg 2088
|||||||| |||||||| | ||| |||||||| ||||| | ||| |||||||||||||||
Sbjct: 350 catccagtccccacatacactggcccctggatgccatctagacccttcatgttgatatcg 291
Query: 2089 aaaaagacaacatttctgttagcatatcgatcatggcgatcaatcccatcaaatctttga 2148
|| || ||| |||||||| ||||||||||||||||||||||| ||||| ||||| |||
Sbjct: 290 aagaaaacagtgtttctgtttgcatatcgatcatggcgatcaataccatcgaatctctga 231
Query: 2149 ggaaactgcacatagcaaactttctttccaagcaaaggatccatcataaaacacattgct 2208
|| ||||| |||||||| | |||||||||||| |||||||| | ||||||||||||
Sbjct: 230 gggaactgaacatagcacagtttctttccaagttggggatccatgagaaaacacattgcc 171
Query: 2209 tcctttatagccttactattattgatatagtgatcacaatccaagttcagcaaataagga 2268
||| | |||||||| || |||| ||||||||||||||||| ||||| | | ||
Sbjct: 170 tcccgcacggccttactgttgttgagatagtgatcacaatccaggttcaaaatgaatggg 111
Query: 2269 gcattagttagtacagcagagactcggaccaatgcattcatagcaccagccttcttgtg 2327
||||| ||||| || ||||||||||| |||| || ||||| ||||| || ||||||||
Sbjct: 110 gcatttgttagaactgcagagactcgaaccagggcgttcatggcaccggctttcttgtg 52
>gb|AY789651.1| Pinus taeda cellulose synthase catalytic subunit (CesA2) mRNA,
complete cds
Length = 3478
Score = 165 bits (83), Expect = 2e-038
Identities = 245/299 (81%)
Strand = Plus / Minus
Query: 2029 catccagtacccacataaattgggccctggataccatccaaacctttcatgttgatatcg 2088
|||||||| |||||||| | ||| |||||||| ||||| | ||| |||||||||||||||
Sbjct: 1871 catccagtccccacatacactggcccctggatgccatctagacccttcatgttgatatcg 1812
Query: 2089 aaaaagacaacatttctgttagcatatcgatcatggcgatcaatcccatcaaatctttga 2148
|| || ||| |||||||| ||||||||||||||||||||||| ||||| ||||| |||
Sbjct: 1811 aagaaaacagtgtttctgtttgcatatcgatcatggcgatcaataccatcgaatctctga 1752
Query: 2149 ggaaactgcacatagcaaactttctttccaagcaaaggatccatcataaaacacattgct 2208
|| ||||| |||||||| | |||||||||||| |||||||| | ||||||||||||
Sbjct: 1751 gggaactgaacatagcacagtttctttccaagttggggatccatgagaaaacacattgcc 1692
Query: 2209 tcctttatagccttactattattgatatagtgatcacaatccaagttcagcaaataagga 2268
||| | |||||||| || |||| ||||||||||||||||| ||||| | | ||
Sbjct: 1691 tcccgcacggccttactgttgttgagatagtgatcacaatccaggttcaaaatgaatggg 1632
Query: 2269 gcattagttagtacagcagagactcggaccaatgcattcatagcaccagccttcttgtg 2327
||||| ||||| || ||||||||||| |||| || ||||| ||||| || ||||||||
Sbjct: 1631 gcatttgttagaactgcagagactcgaaccagggcgttcatggcaccggctttcttgtg 1573
Score = 58.0 bits (29), Expect = 3e-006
Identities = 65/77 (84%)
Strand = Plus / Minus
Query: 1063 accttgagtagtccctggaacacagcaaagagatgtgaagacacgcctccaatgacccaa 1122
|||||||| || || || || |||||||| ||||| | ||| || ||||||||||||||
Sbjct: 2825 accttgagcaggccttgaaaaacagcaaaaagatgagcagagacccctccaatgacccag 2766
Query: 1123 aactgctcgtttctcca 1139
||||| |||||||||||
Sbjct: 2765 aactgttcgtttctcca 2749
Score = 54.0 bits (27), Expect = 4e-005
Identities = 174/223 (78%)
Strand = Plus / Minus
Query: 1382 cataccagagagggcagtggttgctgaagaaaatttcaattgaaccaagagcccaccgaa 1441
||||||||||||| || || | |||| ||||||||| || ||||| | ||||| ||||
Sbjct: 2506 cataccagagaggacaatgcctactgaggaaaatttctatggaacccaatgcccaacgaa 2447
Query: 1442 gaacctggtgaagacgatcggaaagattgagaggtgcggaacctttgaaggcggcccgtt 1501
|||||||||| | |||||| || | ||| | ||| || || |||||||| || | ||
Sbjct: 2446 gaacctggtgcaaacgatctgataaattaataggagctgatcctttgaatgccggcctgg 2387
Query: 1502 taggtatgcagtaaattgaccgccaaccatggcagtgcatcttaaacccagtaagaatat 1561
||| |||||||| | || ||||||||| |||||||||| || || || || || ||||
Sbjct: 2386 gaggcatgcagtataccgatcgccaaccacggcagtgcattttgaagcctgtcaggatat 2327
Query: 1562 cttctgtgactgatccataaatccaaccaatatcttttcccca 1604
| ||||| ||||| ||||| ||||| || || || ||||||||
Sbjct: 2326 cctctgtcactgaaccatatatccatccgatctcctttcccca 2284
Score = 52.0 bits (26), Expect = 2e-004
Identities = 53/62 (85%)
Strand = Plus / Minus
Query: 2422 acctgaatcattccaggatgatcacggacattatttccgggccatggagttccatcctgc 2481
||||||||||||||||| ||||| || ||| || |||||||| || ||||||||||||
Sbjct: 1478 acctgaatcattccagggtgatcgcgagtattgttcccgggccagggcgttccatcctgc 1419
Query: 2482 at 2483
||
Sbjct: 1418 at 1417
Score = 52.0 bits (26), Expect = 2e-004
Identities = 158/202 (78%)
Strand = Plus / Minus
Query: 2669 ttttgcagaaaggaacccatttctttgcaaattcagatgtttcagacaatgcttcaaatg 2728
||||||||||||||||||||||| ||||| || || ||||| | || || || ||||
Sbjct: 1231 ttttgcagaaaggaacccatttccgggcaaactctgaggtttctgtcattgaatcgaatg 1172
Query: 2729 tcagcatggcagcaccatcatcagaaacgtagcacgaaaccttatcaactggataatcca 2788
| ||||||| || ||||| || || || |||||||| ||| | || || || || |||
Sbjct: 1171 tgagcatggatgctccatcgtccgatacatagcacgataccctgtccacagggtagtccg 1112
Query: 2789 ccgaaaggatagatagaacagtattagcagtgaccaatggaggttccttcaagggatcaa 2848
| | |||||||| |||||||||||||| || | || ||||| || |||| ||||| |
Sbjct: 1111 cggccaggatagagagaacagtattagctgtaatcagaggaggctctttcagtggatcca 1052
Query: 2849 ccgtactgacaaagaaatcaac 2870
| ||||| ||||||||||||||
Sbjct: 1051 ctgtactcacaaagaaatcaac 1030
>gb|AY262817.1| Pinus radiata cellulose synthase (CesA6) mRNA, partial cds
Length = 2489
Score = 165 bits (83), Expect = 2e-038
Identities = 245/299 (81%)
Strand = Plus / Minus
Query: 2029 catccagtacccacataaattgggccctggataccatccaaacctttcatgttgatatcg 2088
|||||||| |||||||| | ||| |||||||| ||||| | ||| |||||||||||||||
Sbjct: 723 catccagtccccacatacactggcccctggatgccatctagacccttcatgttgatatcg 664
Query: 2089 aaaaagacaacatttctgttagcatatcgatcatggcgatcaatcccatcaaatctttga 2148
|| || ||| |||||||| ||||||||||||||||||||||| ||||| ||||| |||
Sbjct: 663 aagaaaacagtgtttctgtttgcatatcgatcatggcgatcaataccatcgaatctctga 604
Query: 2149 ggaaactgcacatagcaaactttctttccaagcaaaggatccatcataaaacacattgct 2208
|| ||||| |||||||| | |||||||||||| |||||||| | ||||||||||||
Sbjct: 603 gggaactgaacatagcacagtttctttccaagttggggatccatgagaaaacacattgcc 544
Query: 2209 tcctttatagccttactattattgatatagtgatcacaatccaagttcagcaaataagga 2268
||| | |||||||| || |||| ||||||||||||||||| ||||| | | ||
Sbjct: 543 tcccgcacggccttactgttgttgagatagtgatcacaatccaggttcaaaatgaatggg 484
Query: 2269 gcattagttagtacagcagagactcggaccaatgcattcatagcaccagccttcttgtg 2327
||||| ||||| || ||||||||||| |||| || ||||| ||||| || ||||||||
Sbjct: 483 gcatttgttagaactgcagagactcgaaccagggcgttcatggcaccggctttcttgtg 425
Score = 52.0 bits (26), Expect = 2e-004
Identities = 53/62 (85%)
Strand = Plus / Minus
Query: 2422 acctgaatcattccaggatgatcacggacattatttccgggccatggagttccatcctgc 2481
||||||||||||||||| ||||| || ||| || |||||||| || ||||||||||||
Sbjct: 330 acctgaatcattccagggtgatcgcgagtattgttcccgggccagggcgttccatcctgc 271
Query: 2482 at 2483
||
Sbjct: 270 at 269
Score = 48.1 bits (24), Expect = 0.003
Identities = 48/56 (85%)
Strand = Plus / Minus
Query: 1084 acagcaaagagatgtgaagacacgcctccaatgacccaaaactgctcgtttctcca 1139
|||||||| ||||| | ||| || |||||||||||||| ||||| | |||||||||
Sbjct: 1656 acagcaaaaagatgagcagagacccctccaatgacccagaactgttggtttctcca 1601
Score = 46.1 bits (23), Expect = 0.011
Identities = 65/79 (82%)
Strand = Plus / Minus
Query: 1382 cataccagagagggcagtggttgctgaagaaaatttcaattgaaccaagagcccaccgaa 1441
||||||||||||| || || | |||| ||||||||| || ||||| | ||||| ||||
Sbjct: 1358 cataccagagaggacaatgcctactgaggaaaatttctatggaacccaacgcccaacgaa 1299
Query: 1442 gaacctggtgaagacgatc 1460
|||||||||| | ||||||
Sbjct: 1298 gaacctggtgcaaacgatc 1280
Score = 46.1 bits (23), Expect = 0.011
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 2669 ttttgcagaaaggaacccatttc 2691
|||||||||||||||||||||||
Sbjct: 83 ttttgcagaaaggaacccatttc 61
>gb|AY262818.1| Pinus radiata cellulose synthase (CesA7) mRNA, partial cds
Length = 2588
Score = 165 bits (83), Expect = 2e-038
Identities = 245/299 (81%)
Strand = Plus / Minus
Query: 2029 catccagtacccacataaattgggccctggataccatccaaacctttcatgttgatatcg 2088
|||||||| |||||||| | ||| |||||||| ||||| | ||| |||||||||||||||
Sbjct: 944 catccagtccccacatacactggcccctggatgccatctagacccttcatgttgatatcg 885
Query: 2089 aaaaagacaacatttctgttagcatatcgatcatggcgatcaatcccatcaaatctttga 2148
|| || ||| |||||||| ||||||||||||||||||||||| ||||| ||||| |||
Sbjct: 884 aagaaaacagtgtttctgtttgcatatcgatcatggcgatcaataccatcgaatctctga 825
Query: 2149 ggaaactgcacatagcaaactttctttccaagcaaaggatccatcataaaacacattgct 2208
|| ||||| |||||||| | |||||||||||| |||||||| | ||||||||||||
Sbjct: 824 gggaactgaacatagcacagtttctttccaagttggggatccatgagaaaacacattgcc 765
Query: 2209 tcctttatagccttactattattgatatagtgatcacaatccaagttcagcaaataagga 2268
||| | |||||||| || |||| ||||||||||||||||| ||||| | | ||
Sbjct: 764 tcccgcacggccttactgttgttgagatagtgatcacaatccaggttcaaaatgaacggg 705
Query: 2269 gcattagttagtacagcagagactcggaccaatgcattcatagcaccagccttcttgtg 2327
||||| ||||| || ||||||||||| |||| || ||||| ||||| || ||||||||
Sbjct: 704 gcatttgttagaactgcagagactcgaaccagggcgttcatggcaccggctttcttgtg 646
Score = 58.0 bits (29), Expect = 3e-006
Identities = 65/77 (84%)
Strand = Plus / Minus
Query: 1063 accttgagtagtccctggaacacagcaaagagatgtgaagacacgcctccaatgacccaa 1122
|||||||| || || || || |||||||| ||||| | ||| || ||||||||||||||
Sbjct: 1898 accttgagcaggccttgaaaaacagcaaaaagatgagcagagacccctccaatgacccag 1839
Query: 1123 aactgctcgtttctcca 1139
||||| |||||||||||
Sbjct: 1838 aactgttcgtttctcca 1822
Score = 54.0 bits (27), Expect = 4e-005
Identities = 174/223 (78%)
Strand = Plus / Minus
Query: 1382 cataccagagagggcagtggttgctgaagaaaatttcaattgaaccaagagcccaccgaa 1441
||||||||||||| || || | |||| ||||||||| || ||||| | ||||| ||||
Sbjct: 1579 cataccagagaggacaatgcctactgaggaaaatttctatggaacccaacgcccaacgaa 1520
Query: 1442 gaacctggtgaagacgatcggaaagattgagaggtgcggaacctttgaaggcggcccgtt 1501
|||||||||| | |||||| || | ||| | ||| || || |||||||| || | ||
Sbjct: 1519 gaacctggtgcaaacgatctgataaattaataggagctgatcctttgaatgccggcctgg 1460
Query: 1502 taggtatgcagtaaattgaccgccaaccatggcagtgcatcttaaacccagtaagaatat 1561
||| |||||||| | || ||||||||| |||||||||| || || || || || ||||
Sbjct: 1459 gaggcatgcagtataccgatcgccaaccacggcagtgcattttgaagcctgtcaggatat 1400
Query: 1562 cttctgtgactgatccataaatccaaccaatatcttttcccca 1604
| ||||| ||||| ||||| ||||| || || || ||||||||
Sbjct: 1399 cctctgtcactgaaccatatatccatccgatctcctttcccca 1357
Score = 52.0 bits (26), Expect = 2e-004
Identities = 53/62 (85%)
Strand = Plus / Minus
Query: 2422 acctgaatcattccaggatgatcacggacattatttccgggccatggagttccatcctgc 2481
||||||||||||||||| ||||| || ||| || |||||||| || ||||||||||||
Sbjct: 551 acctgaatcattccagggtgatcgcgagtattgttcccgggccagggcgttccatcctgc 492
Query: 2482 at 2483
||
Sbjct: 491 at 490
Score = 52.0 bits (26), Expect = 2e-004
Identities = 158/202 (78%)
Strand = Plus / Minus
Query: 2669 ttttgcagaaaggaacccatttctttgcaaattcagatgtttcagacaatgcttcaaatg 2728
||||||||||||||||||||||| ||||| || || ||||| | || || || ||||
Sbjct: 304 ttttgcagaaaggaacccatttccgggcaaactctgaggtttctgtcattgaatcgaatg 245
Query: 2729 tcagcatggcagcaccatcatcagaaacgtagcacgaaaccttatcaactggataatcca 2788
| ||||||| || ||||| || || || |||||||| ||| | || || || || |||
Sbjct: 244 tgagcatggatgctccatcgtccgatacatagcacgataccctgtccacagggtagtccg 185
Query: 2789 ccgaaaggatagatagaacagtattagcagtgaccaatggaggttccttcaagggatcaa 2848
| | |||||||| |||||||||||||| || | || ||||| || |||| ||||| |
Sbjct: 184 cggccaggatagagagaacagtattagctgtaatcagaggaggctctttcagtggatcca 125
Query: 2849 ccgtactgacaaagaaatcaac 2870
| ||||| ||||||||||||||
Sbjct: 124 ctgtactcacaaagaaatcaac 103
>gb|AY262819.1| Pinus radiata cellulose synthase (CesA8) mRNA, partial cds
Length = 2287
Score = 165 bits (83), Expect = 2e-038
Identities = 245/299 (81%)
Strand = Plus / Minus
Query: 2029 catccagtacccacataaattgggccctggataccatccaaacctttcatgttgatatcg 2088
|||||||| |||||||| | ||| |||||||| ||||| | ||| |||||||||||||||
Sbjct: 572 catccagtccccacatacactggcccctggatgccatctagacccttcatgttgatatcg 513
Query: 2089 aaaaagacaacatttctgttagcatatcgatcatggcgatcaatcccatcaaatctttga 2148
|| || ||| |||||||| ||||||||||||||||||||||| ||||| ||||| |||
Sbjct: 512 aagaaaacagtgtttctgtttgcatatcgatcatggcgatcaataccatcgaatctctga 453
Query: 2149 ggaaactgcacatagcaaactttctttccaagcaaaggatccatcataaaacacattgct 2208
|| ||||| |||||||| | |||||||||||| |||||||| | ||||||||||||
Sbjct: 452 gggaactgaacatagcacagtttctttccaagttggggatccatgagaaaacacattgcc 393
Query: 2209 tcctttatagccttactattattgatatagtgatcacaatccaagttcagcaaataagga 2268
||| | |||||||| || |||| ||||||||||||||||| ||||| | | ||
Sbjct: 392 tcccgcacggccttactgttgttgagatagtgatcacaatccaggttcaaaatgaatggg 333
Query: 2269 gcattagttagtacagcagagactcggaccaatgcattcatagcaccagccttcttgtg 2327
||||| ||||| || ||||||||||| |||| || ||||| ||||| || ||||||||
Sbjct: 332 gcatttgttagaactgcagagactcgaaccagggcgttcatggcaccggctttcttgtg 274
Score = 56.0 bits (28), Expect = 1e-005
Identities = 49/56 (87%)
Strand = Plus / Minus
Query: 1084 acagcaaagagatgtgaagacacgcctccaatgacccaaaactgctcgtttctcca 1139
|||||||| ||||| | ||| || |||||||||||||| ||||| |||||||||||
Sbjct: 1544 acagcaaaaagatgagcagagacccctccaatgacccagaactgttcgtttctcca 1489
Score = 52.0 bits (26), Expect = 2e-004
Identities = 53/62 (85%)
Strand = Plus / Minus
Query: 2422 acctgaatcattccaggatgatcacggacattatttccgggccatggagttccatcctgc 2481
||||||||||||||||| ||||| || ||| || |||||||| || ||||||||||||
Sbjct: 179 acctgaatcattccagggtgatcgcgagtattgttcccgggccagggcgttccatcctgc 120
Query: 2482 at 2483
||
Sbjct: 119 at 118
Score = 46.1 bits (23), Expect = 0.011
Identities = 65/79 (82%)
Strand = Plus / Minus
Query: 1382 cataccagagagggcagtggttgctgaagaaaatttcaattgaaccaagagcccaccgaa 1441
||||||||||||| || || | |||| ||||||||| || ||||| | ||||| ||||
Sbjct: 1246 cataccagagaggacaatgcctactgaggaaaatttctatggaacccaacgcccaacgaa 1187
Query: 1442 gaacctggtgaagacgatc 1460
|||||||||| | ||||||
Sbjct: 1186 gaacctggtgcaaacgatc 1168
>gb|DR080401.1|DR080401 RTFEPL1_22_A02.g1_A029 Roots plus added iron Pinus taeda cDNA clone
RTFEPL1_22_A02_A029 5', mRNA sequence
Length = 741
Score = 159 bits (80), Expect = 1e-036
Identities = 242/296 (81%)
Strand = Plus / Minus
Query: 2032 ccagtacccacataaattgggccctggataccatccaaacctttcatgttgatatcgaaa 2091
||||| |||||||| | ||| |||||||| ||||| | ||| |||||||||||||||||
Sbjct: 658 ccagtccccacatacactggcccctggatgccatctagacccttcatgttgatatcgaag 599
Query: 2092 aagacaacatttctgttagcatatcgatcatggcgatcaatcccatcaaatctttgagga 2151
|| ||| |||||||| ||||||||||||||||||||||| ||||| ||||| |||||
Sbjct: 598 aaaacagtgtttctgtttgcatatcgatcatggcgatcaataccatcgaatctctgaggg 539
Query: 2152 aactgcacatagcaaactttctttccaagcaaaggatccatcataaaacacattgcttcc 2211
||||| |||||||| | |||||||||||| |||||||| | |||||||||||| |||
Sbjct: 538 aactgaacatagcacagtttctttccaagttggggatccatgagaaaacacattgcctcc 479
Query: 2212 tttatagccttactattattgatatagtgatcacaatccaagttcagcaaataaggagca 2271
| |||||||| || |||| ||||||||||||||||| ||||| | | || |||
Sbjct: 478 cgcacggccttactgttgttgagatagtgatcacaatccaggttcaaaatgaatggggca 419
Query: 2272 ttagttagtacagcagagactcggaccaatgcattcatagcaccagccttcttgtg 2327
|| ||||| || ||||||||||| |||| || ||||| ||||| || ||||||||
Sbjct: 418 tttgttagaactgcagagactcgaaccagggcgttcatggcaccggctttcttgtg 363
Score = 52.0 bits (26), Expect = 2e-004
Identities = 53/62 (85%)
Strand = Plus / Minus
Query: 2422 acctgaatcattccaggatgatcacggacattatttccgggccatggagttccatcctgc 2481
||||||||||||||||| ||||| || ||| || |||||||| || ||||||||||||
Sbjct: 268 acctgaatcattccagggtgatcgcgagtattgttcccgggccagggcgttccatcctgc 209
Query: 2482 at 2483
||
Sbjct: 208 at 207
Score = 42.1 bits (21), Expect = 0.17
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 2669 ttttgcagaaaggaacccatt 2689
|||||||||||||||||||||
Sbjct: 21 ttttgcagaaaggaacccatt 1
>gb|AY789650.1| Pinus taeda cellulose synthase catalytic subunit (CesA1) mRNA,
complete cds
Length = 3127
Score = 145 bits (73), Expect = 2e-032
Identities = 241/297 (81%)
Strand = Plus / Minus
Query: 2028 acatccagtacccacataaattgggccctggataccatccaaacctttcatgttgatatc 2087
|||||||||||||||||| | ||| || ||||| |||||||| || ||||||||||||||
Sbjct: 1650 acatccagtacccacatacactggcccttggatgccatccaatcccttcatgttgatatc 1591
Query: 2088 gaaaaagacaacatttctgttagcatatcgatcatggcgatcaatcccatcaaatctttg 2147
||| || ||| |||| || ||||||||||| |||||| || ||||| || || ||
Sbjct: 1590 gaagaacacagtgtttcgattggcatatcgatcgctgcgatcgataccatcgaacctctg 1531
Query: 2148 aggaaactgcacatagcaaactttctttccaagcaaaggatccatcataaaacacattgc 2207
|| |||||||| ||||| || ||| |||||| | ||||||||||||||| | ||||||
Sbjct: 1530 tgggaactgcacgtagcacacgttccttccaacctcaggatccatcataaagcgcattgc 1471
Query: 2208 ttcctttatagccttactattattgatatagtgatcacaatccaagttcagcaaataagg 2267
||| | ||||| || ||||| | ||||||||||||||||||||||||| || ||
Sbjct: 1470 ttcgcgaacggccttgctgttattaacgtagtgatcacaatccaagttcagcaggtatgg 1411
Query: 2268 agcattagttagtacagcagagactcggaccaatgcattcatagcaccagccttctt 2324
|| || || ||||| ||||||||||| |||||||||||||| ||||| ||||||||
Sbjct: 1410 ggcgttcgtcagtacggcagagactcgaaccaatgcattcatggcaccggccttctt 1354
Score = 89.7 bits (45), Expect = 8e-016
Identities = 204/257 (79%)
Strand = Plus / Minus
Query: 1393 gggcagtggttgctgaagaaaatttcaattgaaccaagagcccaccgaagaacctggtga 1452
|||||||| ||||||| || |||||||| ||||| | ||||| |||||||| |||||
Sbjct: 2240 gggcagtgcctgctgaataagatttcaatagaacccaatgcccaacgaagaacttggtgc 2181
Query: 1453 agacgatcggaaagattgagaggtgcggaacctttgaaggcggcccgtttaggtatgcag 1512
|||||||| || ||||||| ||| || || || ||||| || | | || || ||||||
Sbjct: 2180 agacgatctgatagattgataggagcagaccccttgaatgctggtctcttgggcatgcag 2121
Query: 1513 taaattgaccgccaaccatggcagtgcatcttaaacccagtaagaatatcttctgtgact 1572
||||| || ||||| || ||||||||||||| || || || ||||| |||||||| ||
Sbjct: 2120 taaatggagcgccaccctcggcagtgcatcttgaaacctgttagaatgtcttctgtcaca 2061
Query: 1573 gatccataaatccaaccaatatcttttccccagcctgttttgtcttcatatccacaactg 1632
|| ||||| ||||| || | ||||| ||||| | ||||| ||||| || ||||| |||
Sbjct: 2060 gaaccatagatccatccgacctctttcccccattcggttttctcttcgtagccacagctg 2001
Query: 1633 atgacatgtatagcttc 1649
|| ||||||||||||||
Sbjct: 2000 atcacatgtatagcttc 1984
Score = 69.9 bits (35), Expect = 7e-010
Identities = 62/71 (87%)
Strand = Plus / Minus
Query: 1108 cctccaatgacccaaaactgctcgtttctccaccagtcatcgatgcctacaccactccat 1167
|||||||| ||||||||||| ||||| |||||||| || ||||||| || |||||||||
Sbjct: 2528 cctccaatcacccaaaactgttcgttcctccaccattcttcgatgctcactccactccat 2469
Query: 1168 ctcatttccag 1178
|||| ||||||
Sbjct: 2468 ctcagttccag 2458
Score = 56.0 bits (28), Expect = 1e-005
Identities = 43/48 (89%)
Strand = Plus / Minus
Query: 970 agggtcgtccatttgaatgtgtacagctctgagaactcctcgtcgtct 1017
||||||||||||||||||| |||||||||| |||||| | |||||||
Sbjct: 2666 agggtcgtccatttgaatgcgtacagctctccgaactcattgtcgtct 2619
Score = 52.0 bits (26), Expect = 2e-004
Identities = 113/142 (79%)
Strand = Plus / Minus
Query: 2470 gttccatcctgcattgtccatccttcctcaggaaccttttgggctttagcaaccaaggca 2529
|||||||||||||| |||||||||| || || ||| || ||||| || || | |||
Sbjct: 1208 gttccatcctgcatgatccatccttcgtccggtgtcttctgagctttggcgacaagcgca 1149
Query: 2530 ttgattctgaccttgaattcctcatactctctcttcattgctctccgttctctaacaaag 2589
||||| || || ||| ||||||| |||||||| |||||||||| || || | ||||||
Sbjct: 1148 ttgatcctaactttgtattcctcgtactctcttttcattgctcggcgctccttgacaaag 1089
Query: 2590 tttggcgccaccttgtctttca 2611
|| ||| ||||||||||||||
Sbjct: 1088 ttaggctgcaccttgtctttca 1067
>gb|AY262821.1| Pinus radiata cellulose synthase (CesA2) mRNA, partial cds
Length = 3603
Score = 143 bits (72), Expect = 6e-032
Identities = 243/300 (81%)
Strand = Plus / Minus
Query: 2028 acatccagtacccacataaattgggccctggataccatccaaacctttcatgttgatatc 2087
|||||| ||||||||||||| |||||||||||| |||||||||||||| | ||||||||
Sbjct: 1857 acatcctgtacccacataaactgggccctggattccatccaaacctttgagattgatatc 1798
Query: 2088 gaaaaagacaacatttctgttagcatatcgatcatggcgatcaatcccatcaaatctttg 2147
||||| || ||| || ||||| ||||||| | |||||| |||||||| |||||
Sbjct: 1797 aaaaaacactgtattgtgattggcataccgatcattcctatcaataccatcaaacctttg 1738
Query: 2148 aggaaactgcacatagcaaactttctttccaagcaaaggatccatcataaaacacattgc 2207
||||||||| || || ||||| ||| ||||| ||||||||||||||||||||| ||
Sbjct: 1737 aggaaactggacgtaacaaacagacttcccaagattaggatccatcataaaacacatggc 1678
Query: 2208 ttcctttatagccttactattattgatatagtgatcacaatccaagttcagcaaataagg 2267
|| | |||||||||||||| ||||||||||||||||| | ||||| || |||||
Sbjct: 1677 ctcacgcagcgccttactattatttatatagtgatcacaatcgaggttcaacagataaga 1618
Query: 2268 agcattagttagtacagcagagactcggaccaatgcattcatagcaccagccttcttgtg 2327
|||| || ||||| || || || |||||||||| |||||||||||| || ||||||||
Sbjct: 1617 tccatttgtgagtactgctgaaacacggaccaatgaattcatagcaccggctttcttgtg 1558
Score = 127 bits (64), Expect = 4e-027
Identities = 346/440 (78%)
Strand = Plus / Minus
Query: 2422 acctgaatcattccaggatgatcacggacattatttccgggccatggagttccatcctgc 2481
||||| ||||| |||||||| || | | ||||||||| ||||| ||||| ||||| |||
Sbjct: 1463 acctgtatcatcccaggatggtccctggtattatttccaggccagggagtgccatcttgc 1404
Query: 2482 attgtccatccttcctcaggaaccttttgggctttagcaaccaaggcattgattctgacc 2541
|| ||| || || ||||| ||||| ||||| || ||||| | |||||||| | |||
Sbjct: 1403 ataacccagccctcttcaggtaccttctgggccttcgcaacaagcgcattgatccgaacc 1344
Query: 2542 ttgaattcctcatactctctcttcattgctctccgttctctaacaaagtttggcgccacc 2601
|||||||| ||||| |||||||||||||| ||||| ||| | ||||| | ||| ||
Sbjct: 1343 ttgaattcttcatattctctcttcattgccctccgctcttttacaaaagtaggctgtact 1284
Query: 2602 ttgtctttcaggtagtctatcttctgttggaagtaccactctggagcacgaggctcaagg 2661
||||| |||| ||| || || ||| || |||||||||||||||||| | || |||| |
Sbjct: 1283 ttgtccttcaagtaatccattttcagtgagaagtaccactctggagctctgggttcaatg 1224
Query: 2662 ctatatcttttgcagaaaggaacccatttctttgcaaattcagatgtttcagacaatgct 2721
|| | ||||||| || || ||||||||| |||||||||| || ||||| || | | |
Sbjct: 1223 ttaaactttttgcaaaatggcacccatttccttgcaaattctgaagtttctgaaagggat 1164
Query: 2722 tcaaatgtcagcatggcagcaccatcatcagaaacgtagcacgaaaccttatcaactgga 2781
|| || |||| |||||| || ||||| |||||||| ||||| |||||||| ||||| |||
Sbjct: 1163 tcgaaagtcaacatggctgctccatcgtcagaaacatagcaggaaaccttgtcaacagga 1104
Query: 2782 taatccaccgaaaggatagatagaacagtattagcagtgaccaatggaggttccttcaag 2841
|||||||| || || || || |||||||| || ||||| || | ||||| ||||| ||
Sbjct: 1103 taatccacagacagaatcgacagaacagtgtttgcagtaacaagaggaggctcctttaaa 1044
Query: 2842 ggatcaaccgtactgacaaa 2861
|| ||||| |||||||||||
Sbjct: 1043 gggtcaactgtactgacaaa 1024
Score = 81.8 bits (41), Expect = 2e-013
Identities = 95/113 (84%)
Strand = Plus / Minus
Query: 1537 tgcatcttaaacccagtaagaatatcttctgtgactgatccataaatccaaccaatatct 1596
||||| ||||| ||||| | ||||||||| || ||||| ||||||||||||||||| ||
Sbjct: 2321 tgcattttaaatccagttaaaatatcttccgtcactgaaccataaatccaaccaatctca 2262
Query: 1597 tttccccagcctgttttgtcttcatatccacaactgatgacatgtatagcttc 1649
||||||| |||| ||||||||||| ||||| || || ||||| ||||||||
Sbjct: 2261 cgtccccagtctgtcttgtcttcatacccacagctaataacatggatagcttc 2209
Score = 77.8 bits (39), Expect = 3e-012
Identities = 60/67 (89%)
Strand = Plus / Minus
Query: 817 aggaacgggtaaagatggacgatcacccaaaatgcaaagaagagcttcccgaacaggggg 876
||||| |||||||||||||| ||||||||||| ||||| ||||| || |||||||||||
Sbjct: 3044 aggaaagggtaaagatggacaatcacccaaaacgcaaaaaagagttttccgaacagggga 2985
Query: 877 ccccatg 883
|||||||
Sbjct: 2984 ccccatg 2978
Score = 63.9 bits (32), Expect = 5e-008
Identities = 77/92 (83%)
Strand = Plus / Minus
Query: 1087 gcaaagagatgtgaagacacgcctccaatgacccaaaactgctcgtttctccaccagtca 1146
||||||||||| | ||||| |||||||||||||| || || || || |||||||| |||
Sbjct: 2771 gcaaagagatgagctgacacacctccaatgacccagaattgttcattcctccaccattca 2712
Query: 1147 tcgatgcctacaccactccatctcatttccag 1178
|| || || || |||||||||| |||||||||
Sbjct: 2711 tcaataccaaccccactccatcgcatttccag 2680
Score = 46.1 bits (23), Expect = 0.011
Identities = 77/95 (81%)
Strand = Plus / Minus
Query: 2917 agccggtcaagataggtttccctctcgataggaaaccactttggaaactggtcaagaatc 2976
|||| |||||| || |||||||| | ||| || | ||| || |||||||| || || |||
Sbjct: 968 agcctgtcaaggtatgtttccctattgatgggtagccatttcggaaactgatccaggatc 909
Query: 2977 caagacatggcaaaccaaatttcacagatcacaga 3011
|| || ||||||||||||| ||||| ||||||||
Sbjct: 908 catgaaatggcaaaccaaacctcacatatcacaga 874
>gb|DR744890.1|DR744890 RTCU1_25_C12.g1_A029 Roots plus added copper Pinus taeda cDNA clone
RTCU1_25_C12_A029 5', mRNA sequence
Length = 754
Score = 135 bits (68), Expect = 2e-029
Identities = 131/152 (86%)
Strand = Plus / Minus
Query: 2029 catccagtacccacataaattgggccctggataccatccaaacctttcatgttgatatcg 2088
|||||||| |||||||| | ||| |||||||| ||||| | ||| |||||||||||||||
Sbjct: 175 catccagtccccacatacactggcccctggatgccatctagacccttcatgttgatatcg 116
Query: 2089 aaaaagacaacatttctgttagcatatcgatcatggcgatcaatcccatcaaatctttga 2148
|| || ||| |||||||| ||||||||||||||||||||||| ||||| ||||| |||
Sbjct: 115 aagaaaacagtgtttctgtttgcatatcgatcatggcgatcaataccatcgaatctctga 56
Query: 2149 ggaaactgcacatagcaaactttctttccaag 2180
|| ||||| |||||||| | ||||||||||||
Sbjct: 55 gggaactgaacatagcacagtttctttccaag 24
>gb|AY262816.1| Pinus radiata cellulose synthase (CesA5) mRNA, partial cds
Length = 1989
Score = 135 bits (68), Expect = 2e-029
Identities = 131/152 (86%)
Strand = Plus / Minus
Query: 2029 catccagtacccacataaattgggccctggataccatccaaacctttcatgttgatatcg 2088
|||||||| |||||||| | ||| |||||||| ||||| | ||| |||||||||||||||
Sbjct: 165 catccagtccccacatacactggcccctggatgccatctagacccttcatgttgatatcg 106
Query: 2089 aaaaagacaacatttctgttagcatatcgatcatggcgatcaatcccatcaaatctttga 2148
|| || ||| |||||||| ||||||||||||||||||||||| ||||| ||||| |||
Sbjct: 105 aagaaaacagtgtttctgtttgcatatcgatcatggcgatcaataccatcgaatctctga 46
Query: 2149 ggaaactgcacatagcaaactttctttccaag 2180
|| ||||| |||||||| | ||||||||||||
Sbjct: 45 gggaactgaacatagcacagtttctttccaag 14
Score = 58.0 bits (29), Expect = 3e-006
Identities = 65/77 (84%)
Strand = Plus / Minus
Query: 1063 accttgagtagtccctggaacacagcaaagagatgtgaagacacgcctccaatgacccaa 1122
|||||||| || || || || |||||||| ||||| | ||| || ||||||||||||||
Sbjct: 1119 accttgagcaggccttgaaaaacagcaaaaagatgagcagagacccctccaatgacccag 1060
Query: 1123 aactgctcgtttctcca 1139
||||| |||||||||||
Sbjct: 1059 aactgttcgtttctcca 1043
Score = 46.1 bits (23), Expect = 0.011
Identities = 65/79 (82%)
Strand = Plus / Minus
Query: 1382 cataccagagagggcagtggttgctgaagaaaatttcaattgaaccaagagcccaccgaa 1441
||||||||||||| || || | |||| ||||||||| || ||||| | ||||| ||||
Sbjct: 800 cataccagagaggacaatgcctactgaggaaaatttctatggaacccaacgcccaacgaa 741
Query: 1442 gaacctggtgaagacgatc 1460
|||||||||| | ||||||
Sbjct: 740 gaacctggtgcaaacgatc 722
>gb|AY262820.1| Pinus radiata cellulose synthase (CesA10) mRNA, complete cds
Length = 4428
Score = 135 bits (68), Expect = 2e-029
Identities = 152/180 (84%)
Strand = Plus / Minus
Query: 2401 ccaccactttgaccaaggaaaacctgaatcattccaggatgatcacggacattatttccg 2460
|||||||| ||||| | ||| ||||| ||||| |||||||| || ||| |||||||||
Sbjct: 2237 ccaccactatgacctaagaacacctgtatcatcccaggatggtcccgggtattatttcca 2178
Query: 2461 ggccatggagttccatcctgcattgtccatccttcctcaggaaccttttgggctttagca 2520
||||| || |||||||| ||||| |||| ||||| ||||||||||| || |||||||||
Sbjct: 2177 ggccaaggtgttccatcttgcataatccagccttcttcaggaaccttctgagctttagca 2118
Query: 2521 accaaggcattgattctgaccttgaattcctcatactctctcttcattgctctccgttct 2580
|| | |||||||||| ||||||||| || ||||| ||||||||||||||||| ||||||
Sbjct: 2117 acaagagcattgattcggaccttgaactcttcatattctctcttcattgctctacgttct 2058
Score = 107 bits (54), Expect = 3e-021
Identities = 156/190 (82%)
Strand = Plus / Minus
Query: 2683 acccatttctttgcaaattcagatgtttcagacaatgcttcaaatgtcagcatggcagca 2742
||||||||| |||||||||| || |||||||| | ||||||||||| ||||| |||||
Sbjct: 1955 acccatttccttgcaaattctgaggtttcagaaagggcttcaaatgttagcattgcagct 1896
Query: 2743 ccatcatcagaaacgtagcacgaaaccttatcaactggataatccaccgaaaggatagat 2802
||||| ||||| || || || ||||| |||||||||||||| ||||| ||||| || ||
Sbjct: 1895 ccatcgtcagacacataacatgaaactttatcaactggatagtccacagaaagaattgac 1836
Query: 2803 agaacagtattagcagtgaccaatggaggttccttcaagggatcaaccgtactgacaaag 2862
| ||||||||| || || || | ||||| ||||||| |||||||| || ||||||||
Sbjct: 1835 aaaacagtatttgccgtcacaagaggaggctccttcataggatcaactgtgctgacaaaa 1776
Query: 2863 aaatcaacag 2872
| ||||||||
Sbjct: 1775 atatcaacag 1766
Score = 97.6 bits (49), Expect = 3e-018
Identities = 136/165 (82%)
Strand = Plus / Minus
Query: 1033 acagtgaagctcgtgtctacaccagctatgaccttgagtagtccctggaacacagcaaag 1092
||||||||| | ||||| || ||||| | |||||| |||| ||| || | || ||||||
Sbjct: 3563 acagtgaagtttgtgtcaacgccagcaaggacctttagtaatccttgaatgactgcaaag 3504
Query: 1093 agatgtgaagacacgcctccaatgacccaaaactgctcgtttctccaccagtcatcgatg 1152
||||| | |||||| |||||||| ||||| |||||||| || |||||||| ||||| |||
Sbjct: 3503 agatgagcagacacacctccaatcacccagaactgctcattcctccaccattcatcaatg 3444
Query: 1153 cctacaccactccatctcatttccaggatgctcgtagcaaaaatg 1197
|| || || ||||||| |||||| || |||| |||||||||||||
Sbjct: 3443 ccaaccccgctccatcgcatttctagtatgcccgtagcaaaaatg 3399
Score = 93.7 bits (47), Expect = 5e-017
Identities = 137/167 (82%)
Strand = Plus / Minus
Query: 2038 cccacataaattgggccctggataccatccaaacctttcatgttgatatcgaaaaagaca 2097
|||||||||| || ||||| || ||||||||||| |||| |||||||| ||||||||
Sbjct: 2600 cccacataaacaggcccctgtatcccatccaaacccttcaaattgatatcaaaaaagact 2541
Query: 2098 acatttctgttagcatatcgatcatggcgatcaatcccatcaaatctttgaggaaactgc 2157
||| |||||||||||||||| | ||||| |||||||| |||||||| |||||
Sbjct: 2540 gtattgtgattagcatatcgatcatttctgtcaatgccatcaaacctttgagggaactga 2481
Query: 2158 acatagcaaactttctttccaagcaaaggatccatcataaaacacat 2204
||||| || |||||||| ||||| |||||||||||||||||||||
Sbjct: 2480 acataacagactttcttcccaagagtaggatccatcataaaacacat 2434
Score = 81.8 bits (41), Expect = 2e-013
Identities = 95/113 (84%)
Strand = Plus / Minus
Query: 1537 tgcatcttaaacccagtaagaatatcttctgtgactgatccataaatccaaccaatatct 1596
||||| ||||| ||||| | |||||||||||| || || ||||| ||||||||||| |||
Sbjct: 3059 tgcattttaaagccagtcaaaatatcttctgtcacagaaccatatatccaaccaatctct 3000
Query: 1597 tttccccagcctgttttgtcttcatatccacaactgatgacatgtatagcttc 1649
|||||||| ||| ||||||||||| ||||| ||||| ||||| || |||||
Sbjct: 2999 tttccccaatctgacttgtcttcataaccacagctgattacatggattgcttc 2947
Score = 75.8 bits (38), Expect = 1e-011
Identities = 74/86 (86%)
Strand = Plus / Minus
Query: 2917 agccggtcaagataggtttccctctcgataggaaaccactttggaaactggtcaagaatc 2976
|||| ||||||||| |||||||| | ||| |||| ||| || |||||||| |||||||||
Sbjct: 1721 agcctgtcaagataagtttccctattgatgggaagccatttaggaaactgatcaagaatc 1662
Query: 2977 caagacatggcaaaccaaatttcaca 3002
|| || |||||||||||||| |||||
Sbjct: 1661 caggatatggcaaaccaaatctcaca 1636
Score = 63.9 bits (32), Expect = 5e-008
Identities = 62/72 (86%)
Strand = Plus / Minus
Query: 814 ttgaggaacgggtaaagatggacgatcacccaaaatgcaaagaagagcttcccgaacagg 873
|||||||| || ||||| || || ||||||||||| ||||| ||||| ||||| ||||||
Sbjct: 3785 ttgaggaaaggataaaggtgaacaatcacccaaaaagcaaaaaagagtttcccaaacagg 3726
Query: 874 gggccccatgat 885
|| |||||||||
Sbjct: 3725 ggaccccatgat 3714
>gb|BF517368.1|BF517368 NXSI_013_F11_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_013_F11 5' similar to Arabidopsis thaliana
sequence At5g17420 cellulose synthase catalytic subunit
(IRX3) see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 332
Score = 127 bits (64), Expect = 4e-027
Identities = 217/268 (80%)
Strand = Plus / Minus
Query: 2057 ggataccatccaaacctttcatgttgatatcgaaaaagacaacatttctgttagcatatc 2116
|||| |||||||| || ||||||||||||||||| || ||| |||| || |||||||
Sbjct: 273 ggatgccatccaatcccttcatgttgatatcgaagaacacagtgtttcgattggcatatc 214
Query: 2117 gatcatggcgatcaatcccatcaaatctttgaggaaactgcacatagcaaactttctttc 2176
|||| |||||| || ||||| || || || || |||||||| ||||| || ||| |||
Sbjct: 213 gatcgctgcgatcgataccatcgaacctctgtgggaactgcacgtagcacacgttccttc 154
Query: 2177 caagcaaaggatccatcataaaacacattgcttcctttatagccttactattattgatat 2236
||| | ||||||||||||||| ||||||||||| | ||||| || ||||| | |
Sbjct: 153 caacctcaggatccatcataaagcacattgcttcgcgaacggccttgctgttattaacgt 94
Query: 2237 agtgatcacaatccaagttcagcaaataaggagcattagttagtacagcagagactcgga 2296
|||||||||||||||||||||||| || || || || || ||||| ||||||||||| |
Sbjct: 93 agtgatcacaatccaagttcagcaggtatggggcgttcgtcagtacggcagagactcgaa 34
Query: 2297 ccaatgcattcatagcaccagccttctt 2324
||||||||||||| ||||| ||||||||
Sbjct: 33 ccaatgcattcatggcaccggccttctt 6
>dbj|BD236020.1| Materials and method for modification of plant cell wall
polysaccharides
Length = 3851
Score = 125 bits (63), Expect = 1e-026
Identities = 420/539 (77%)
Strand = Plus / Minus
Query: 2029 catccagtacccacataaattgggccctggataccatccaaacctttcatgttgatatcg 2088
|||||||| |||||||| | || || || || ||||||| ||||||||||||||||||
Sbjct: 2086 catccagttcccacatatacaggcccttgaattccatccagacctttcatgttgatatca 2027
Query: 2089 aaaaagacaacatttctgttagcatatcgatcatggcgatcaatcccatcaaatctttga 2148
|| || || |||| || || || || |||| ||||||||| ||||| ||||| |||
Sbjct: 2026 aagaatacggtgtttcgattggcgtaacggtcattgcgatcaataccatcgaatctctga 1967
Query: 2149 ggaaactgcacatagcaaactttctttccaagcaaaggatccatcataaaacacattgct 2208
|| || || ||||| || ||||| | |||| | ||||||||||||||| ||||| ||
Sbjct: 1966 gggaattggacataacagacttttctcccaacctgaggatccatcataaagcacatgcct 1907
Query: 2209 tcctttatagccttactattattgatatagtgatcacaatccaagttcagcaaataagga 2268
||| | || ||||| ||||| || || |||||||||||||||| ||||||| | | |||
Sbjct: 1906 tccctgattgccttgctattgttaatgtagtgatcacaatccagattcagcataaatgga 1847
Query: 2269 gcattagttagtacagcagagactcggaccaatgcattcatagcaccagccttcttgtga 2328
||||| || || |||||||| || || ||||| |||||||| ||||| ||||||||||||
Sbjct: 1846 gcattggtgagcacagcagaaacccgaaccaaagcattcatggcaccggccttcttgtga 1787
Query: 2329 tggttgtagcctggccgtttttctcttgaaacataaaccaatcgaggcagctcatttcct 2388
|| | | | || || | || || | |||||||| || | ||||| |||||||| |||
Sbjct: 1786 tgctggaaaccaggtctcttctcacgagaaacatatactagccgaggaagctcattgcct 1727
Query: 2389 tccacatcatggccaccactttgaccaaggaaaacctgaatcattccaggatgatcacgg 2448
|| ||| |||| ||||| ||||| | ||| || || ||||| |||||||| ||||||
Sbjct: 1726 tctgtatcgaggccgccactgtgacccaagaacacttggatcataccaggatggtcacgg 1667
Query: 2449 acattatttccgggccatggagttccatcctgcattgtccatccttcctcaggaaccttt 2508
|||||| || ||||| || || || || ||||||||||||||||||| || || ||
Sbjct: 1666 gtattattaccaggccaaggcgtaccgtcttgcattgtccatccttccttgggcacttta 1607
Query: 2509 tgggctttagcaaccaaggcattgattctgaccttgaattcctcatactctctcttcat 2567
||| || |||||||| |||||| | ||||||||||| ||||| |||||||||||
Sbjct: 1606 gaggcctttgcaaccaaccgattgatgcgcaccttgaattcttcatattctctcttcat 1548
Score = 119 bits (60), Expect = 9e-025
Identities = 144/172 (83%)
Strand = Plus / Minus
Query: 1483 cctttgaaggcggcccgtttaggtatgcagtaaattgaccgccaaccatggcagtgcatc 1542
|||||||| || || ||||| || || |||||||| |||||||| || | |||||||
Sbjct: 2584 cctttgaatgctgctcgtttgggcatacagtaaatggaccgccagcctcgagtgtgcatc 2525
Query: 1543 ttaaacccagtaagaatatcttctgtgactgatccataaatccaaccaatatcttttccc 1602
|| || ||||| ||||| || ||||||||||||||||| ||||| |||| |||||||||
Sbjct: 2524 ttgaatccagtcagaatgtcctctgtgactgatccatagatccatccaagctcttttccc 2465
Query: 1603 cagcctgttttgtcttcatatccacaactgatgacatgtatagcttccttca 1654
|| | |||||||||||||||||||| ||||||||||| ||||| |||||||
Sbjct: 2464 cattccgttttgtcttcatatccacagctgatgacatgaatagcctccttca 2413
Score = 71.9 bits (36), Expect = 2e-010
Identities = 54/60 (90%)
Strand = Plus / Minus
Query: 2943 gataggaaaccactttggaaactggtcaagaatccaagacatggcaaaccaaatttcaca 3002
|||||| |||||||| |||||||| ||||||||||| |||| ||||||||| ||||||||
Sbjct: 1172 gataggcaaccacttgggaaactgatcaagaatccatgacaaggcaaaccagatttcaca 1113
Score = 48.1 bits (24), Expect = 0.003
Identities = 81/100 (81%)
Strand = Plus / Minus
Query: 808 agacccttgaggaacgggtaaagatggacgatcacccaaaatgcaaagaagagcttcccg 867
|||||||||||||| || || || || || || ||||| ||||||||||| ||||| ||
Sbjct: 3259 agacccttgaggaaaggatacaggtgcacaatgacccagaatgcaaagaaaagcttaccc 3200
Query: 868 aacagggggccccatgattcatatccgttgttgatcgcat 907
|| || || |||||||| | | |||| |||||||| ||||
Sbjct: 3199 aagagaggaccccatgactgaaatccattgttgattgcat 3160
Score = 48.1 bits (24), Expect = 0.003
Identities = 48/56 (85%)
Strand = Plus / Minus
Query: 1687 ccaccattctcaagaagtgtggatgcaacaaaaactgaagactggccaaatttctt 1742
||||||||||| | || |||||| ||||||| |||||||||||||||| |||||
Sbjct: 2380 ccaccattctccatcagagtggattgaacaaaagctgaagactggccaaacttctt 2325
>gb|AY789652.1| Pinus taeda cellulose synthase catalytic subunit (CesA3) mRNA,
complete cds
Length = 3959
Score = 125 bits (63), Expect = 1e-026
Identities = 420/539 (77%)
Strand = Plus / Minus
Query: 2029 catccagtacccacataaattgggccctggataccatccaaacctttcatgttgatatcg 2088
|||||||| |||||||| | || || || || ||||||| ||||||||||||||||||
Sbjct: 2092 catccagttcccacatatacaggcccttgaattccatccagacctttcatgttgatatca 2033
Query: 2089 aaaaagacaacatttctgttagcatatcgatcatggcgatcaatcccatcaaatctttga 2148
|| || || |||| || || || || |||| ||||||||| ||||| ||||| |||
Sbjct: 2032 aagaatacggtgtttcgattggcgtaacggtcattgcgatcaataccatcgaatctctga 1973
Query: 2149 ggaaactgcacatagcaaactttctttccaagcaaaggatccatcataaaacacattgct 2208
|| || || ||||| || ||||| | |||| | ||||||||||||||| ||||| |||
Sbjct: 1972 gggaattggacataacagacttttctcccaacctgaggatccatcataaagcacatggct 1913
Query: 2209 tcctttatagccttactattattgatatagtgatcacaatccaagttcagcaaataagga 2268
||| | || ||||| || || || || |||||||||||||||| ||||||| | | |||
Sbjct: 1912 tccctgattgccttgctgttgttaatgtagtgatcacaatccagattcagcataaatgga 1853
Query: 2269 gcattagttagtacagcagagactcggaccaatgcattcatagcaccagccttcttgtga 2328
||||| || || |||||||| || || ||||| |||||||| ||||| ||||||||||||
Sbjct: 1852 gcattggtgagcacagcagaaacccgaaccaaagcattcatggcaccggccttcttgtga 1793
Query: 2329 tggttgtagcctggccgtttttctcttgaaacataaaccaatcgaggcagctcatttcct 2388
|| | | | || || | || || | |||||||| || | ||||| |||||||| |||
Sbjct: 1792 tgctggaaaccaggtctcttctcacgagaaacatatactagccgaggaagctcattgcct 1733
Query: 2389 tccacatcatggccaccactttgaccaaggaaaacctgaatcattccaggatgatcacgg 2448
|| ||| |||| ||||| ||||| | ||| || || ||||| |||||||| ||||||
Sbjct: 1732 tctgtatcgaggccgccactgtgacccaagaacacttggatcataccaggatggtcacgg 1673
Query: 2449 acattatttccgggccatggagttccatcctgcattgtccatccttcctcaggaaccttt 2508
|||||| || ||||| || || || || ||||||||||||||||||| || || ||
Sbjct: 1672 gtattattaccaggccaaggcgtaccgtcttgcattgtccatccttccttgggcacttta 1613
Query: 2509 tgggctttagcaaccaaggcattgattctgaccttgaattcctcatactctctcttcat 2567
||| || |||||||| |||||| | ||||||||||| ||||| |||||||||||
Sbjct: 1612 gaggcctttgcaaccaaccgattgatgcgcaccttgaattcttcatattctctcttcat 1554
Score = 119 bits (60), Expect = 9e-025
Identities = 144/172 (83%)
Strand = Plus / Minus
Query: 1483 cctttgaaggcggcccgtttaggtatgcagtaaattgaccgccaaccatggcagtgcatc 1542
|||||||| || || ||||| || || |||||||| |||||||| || | |||||||
Sbjct: 2590 cctttgaatgctgctcgtttgggcatacagtaaatggaccgccagcctcgagtgtgcatc 2531
Query: 1543 ttaaacccagtaagaatatcttctgtgactgatccataaatccaaccaatatcttttccc 1602
|| || ||||| ||||| || ||||||||||||||||| ||||| |||| |||||||||
Sbjct: 2530 ttgaatccagtcagaatgtcctctgtgactgatccatagatccatccaagctcttttccc 2471
Query: 1603 cagcctgttttgtcttcatatccacaactgatgacatgtatagcttccttca 1654
|| | |||||||||||||||||||| ||||||||||| ||||| |||||||
Sbjct: 2470 cattccgttttgtcttcatatccacagctgatgacatgaatagcctccttca 2419
Score = 71.9 bits (36), Expect = 2e-010
Identities = 54/60 (90%)
Strand = Plus / Minus
Query: 2943 gataggaaaccactttggaaactggtcaagaatccaagacatggcaaaccaaatttcaca 3002
|||||| |||||||| |||||||| ||||||||||| |||| ||||||||| ||||||||
Sbjct: 1178 gataggcaaccacttgggaaactgatcaagaatccatgacaaggcaaaccagatttcaca 1119
Score = 52.0 bits (26), Expect = 2e-004
Identities = 92/114 (80%)
Strand = Plus / Minus
Query: 1095 atgtgaagacacgcctccaatgacccaaaactgctcgtttctccaccagtcatcgatgcc 1154
||||| ||| || |||||||| ||||| ||||| || |||| |||||| || || ||||
Sbjct: 2978 atgtgcagaaacccctccaataacccagaactgttcatttcgccaccattcttcaatgct 2919
Query: 1155 tacaccactccatctcatttccaggatgctcgtagcaaaaatgcagatgaaaag 1208
|| |||||||| ||||||||||| || | || |||||||| ||||||||||
Sbjct: 2918 cactccactccacctcatttccagaataccagtggcaaaaattgagatgaaaag 2865
Score = 48.1 bits (24), Expect = 0.003
Identities = 81/100 (81%)
Strand = Plus / Minus
Query: 808 agacccttgaggaacgggtaaagatggacgatcacccaaaatgcaaagaagagcttcccg 867
|||||||||||||| || || || || || || ||||| ||||||||||| ||||| ||
Sbjct: 3265 agacccttgaggaaaggatacaggtgcacaataacccagaatgcaaagaaaagcttaccc 3206
Query: 868 aacagggggccccatgattcatatccgttgttgatcgcat 907
|| || || |||||||| | | |||| |||||||| ||||
Sbjct: 3205 aagagaggaccccatgactgaaatccattgttgattgcat 3166
Score = 48.1 bits (24), Expect = 0.003
Identities = 48/56 (85%)
Strand = Plus / Minus
Query: 1687 ccaccattctcaagaagtgtggatgcaacaaaaactgaagactggccaaatttctt 1742
||||||||||| | || |||||| ||||||| |||||||||||||||| |||||
Sbjct: 2386 ccaccattctccatcagagtggattgaacaaaagctgaagactggccaaacttctt 2331
>gb|BG317558.1|BG317558 NXPV_003_B08_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_003_B08 5' similar to Arabidopsis
thaliana sequence At5g05170 cellulose synthase catalytic
subunit (Ath-B) see
http://mips.gsf.de/proj/thal/db/index.html, mRNA sequence
Length = 536
Score = 119 bits (60), Expect = 9e-025
Identities = 144/172 (83%)
Strand = Plus / Minus
Query: 1483 cctttgaaggcggcccgtttaggtatgcagtaaattgaccgccaaccatggcagtgcatc 1542
|||||||| || || ||||| || || |||||||| |||||||| || | |||||||
Sbjct: 303 cctttgaatgctgctcgtttgggcatacagtaaatggaccgccagcctcgagtgtgcatc 244
Query: 1543 ttaaacccagtaagaatatcttctgtgactgatccataaatccaaccaatatcttttccc 1602
|| || ||||| ||||| || ||||||||||||||||| ||||| |||| |||||||||
Sbjct: 243 ttgaatccagtcagaatgtcctctgtgactgatccatagatccatccaagctcttttccc 184
Query: 1603 cagcctgttttgtcttcatatccacaactgatgacatgtatagcttccttca 1654
|| | |||||||||||||||||||| ||||||||||| ||||| |||||||
Sbjct: 183 cattccgttttgtcttcatatccacagctgatgacatgaatagcctccttca 132
Score = 48.1 bits (24), Expect = 0.003
Identities = 48/56 (85%)
Strand = Plus / Minus
Query: 1687 ccaccattctcaagaagtgtggatgcaacaaaaactgaagactggccaaatttctt 1742
||||||||||| | || |||||| ||||||| |||||||||||||||| |||||
Sbjct: 99 ccaccattctccatcagagtggattgaacaaaagctgaagactggccaaacttctt 44
>gb|AY639654.1| Pinus radiata cellulose synthase catalytic subunit (CesA1) mRNA,
complete cds
Length = 3911
Score = 119 bits (60), Expect = 9e-025
Identities = 144/172 (83%)
Strand = Plus / Minus
Query: 1483 cctttgaaggcggcccgtttaggtatgcagtaaattgaccgccaaccatggcagtgcatc 1542
|||||||| || || ||||| || || |||||||| |||||||| || | |||||||
Sbjct: 2600 cctttgaatgctgctcgtttgggcatacagtaaatggaccgccagcctcgagtgtgcatc 2541
Query: 1543 ttaaacccagtaagaatatcttctgtgactgatccataaatccaaccaatatcttttccc 1602
|| || ||||| ||||| || ||||||||||||||||| ||||| |||| |||||||||
Sbjct: 2540 ttgaatccagtcagaatgtcctctgtgactgatccatagatccatccaagctcttttccc 2481
Query: 1603 cagcctgttttgtcttcatatccacaactgatgacatgtatagcttccttca 1654
|| | |||||||||||||||||||| ||||||||||| ||||| |||||||
Sbjct: 2480 cattccgttttgtcttcatatccacagctgatgacatgaatagcctccttca 2429
Score = 117 bits (59), Expect = 4e-024
Identities = 419/539 (77%)
Strand = Plus / Minus
Query: 2029 catccagtacccacataaattgggccctggataccatccaaacctttcatgttgatatcg 2088
|||||||| |||||||| | || || || || ||||||| ||||||||||||||||||
Sbjct: 2102 catccagttcccacatatacaggcccttgaattccatccagacctttcatgttgatatca 2043
Query: 2089 aaaaagacaacatttctgttagcatatcgatcatggcgatcaatcccatcaaatctttga 2148
|| || || |||| || || || || |||| ||||||||| ||||| ||||| |||
Sbjct: 2042 aagaatacggtgtttcgattggcgtaacggtcattgcgatcaataccatcgaatctctga 1983
Query: 2149 ggaaactgcacatagcaaactttctttccaagcaaaggatccatcataaaacacattgct 2208
|| || || ||||| || ||||| | |||| | ||||||||||||||| ||||| ||
Sbjct: 1982 gggaattggacataacagacttttctcccaacctgaggatccatcataaagcacatgcct 1923
Query: 2209 tcctttatagccttactattattgatatagtgatcacaatccaagttcagcaaataagga 2268
||| | || ||||| || || || || |||||||||||||||| ||||||| | | |||
Sbjct: 1922 tccctgattgccttgctgttgttaatgtagtgatcacaatccagattcagcataaatgga 1863
Query: 2269 gcattagttagtacagcagagactcggaccaatgcattcatagcaccagccttcttgtga 2328
||||| || || |||||||| || || ||||| |||||||| ||||| ||||||||||||
Sbjct: 1862 gcattggtgagcacagcagaaacccgaaccaaagcattcatggcaccggccttcttgtga 1803
Query: 2329 tggttgtagcctggccgtttttctcttgaaacataaaccaatcgaggcagctcatttcct 2388
|| | | | || || | || || | |||||||| || | ||||| |||||||| |||
Sbjct: 1802 tgctggaaaccaggtctcttctcacgagaaacatatactagccgaggaagctcattgcct 1743
Query: 2389 tccacatcatggccaccactttgaccaaggaaaacctgaatcattccaggatgatcacgg 2448
|| ||| |||| ||||| ||||| | ||| || || ||||| |||||||| ||||||
Sbjct: 1742 tctgtatcgaggccgccactgtgacccaagaacacttggatcataccaggatggtcacgg 1683
Query: 2449 acattatttccgggccatggagttccatcctgcattgtccatccttcctcaggaaccttt 2508
|||||| || ||||| || || || || ||||||||||||||||||| || || ||
Sbjct: 1682 gtattattaccaggccaaggcgtaccgtcttgcattgtccatccttccttgggcacttta 1623
Query: 2509 tgggctttagcaaccaaggcattgattctgaccttgaattcctcatactctctcttcat 2567
||| || |||||||| |||||| | ||||||||||| ||||| |||||||||||
Sbjct: 1622 gaggcctttgcaaccaaccgattgatgcgcaccttgaattcttcatattctctcttcat 1564
Score = 71.9 bits (36), Expect = 2e-010
Identities = 54/60 (90%)
Strand = Plus / Minus
Query: 2943 gataggaaaccactttggaaactggtcaagaatccaagacatggcaaaccaaatttcaca 3002
|||||| |||||||| |||||||| ||||||||||| |||| ||||||||| ||||||||
Sbjct: 1188 gataggcaaccacttgggaaactgatcaagaatccatgacaaggcaaaccagatttcaca 1129
Score = 52.0 bits (26), Expect = 2e-004
Identities = 92/114 (80%)
Strand = Plus / Minus
Query: 1095 atgtgaagacacgcctccaatgacccaaaactgctcgtttctccaccagtcatcgatgcc 1154
||||| ||| || |||||||| ||||| ||||| || |||| |||||| || || ||||
Sbjct: 2988 atgtgcagaaacccctccaataacccagaactgttcatttcgccaccattcttcaatgct 2929
Query: 1155 tacaccactccatctcatttccaggatgctcgtagcaaaaatgcagatgaaaag 1208
|| |||||||| ||||||||||| || | || |||||||| ||||||||||
Sbjct: 2928 cactccactccacctcatttccagaataccagtggcaaaaattgagatgaaaag 2875
Score = 48.1 bits (24), Expect = 0.003
Identities = 81/100 (81%)
Strand = Plus / Minus
Query: 808 agacccttgaggaacgggtaaagatggacgatcacccaaaatgcaaagaagagcttcccg 867
|||||||||||||| || || || || || || ||||| ||||||||||| ||||| ||
Sbjct: 3275 agacccttgaggaaaggatacaggtgcacaatgacccagaatgcaaagaaaagcttaccc 3216
Query: 868 aacagggggccccatgattcatatccgttgttgatcgcat 907
|| || || |||||||| | | |||| |||||||| ||||
Sbjct: 3215 aagagaggaccccatgactgaaatccattgttgattgcat 3176
Score = 48.1 bits (24), Expect = 0.003
Identities = 48/56 (85%)
Strand = Plus / Minus
Query: 1687 ccaccattctcaagaagtgtggatgcaacaaaaactgaagactggccaaatttctt 1742
||||||||||| | || |||||| ||||||| |||||||||||||||| |||||
Sbjct: 2396 ccaccattctccatcagagtggattgaacaaaagctgaagactggccaaacttctt 2341
>gb|BG275715.1|BG275715 NXSI_145_B01_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_145_B01 5' similar to Arabidopsis thaliana
sequence At4g18780 cellulose synthase catalytic subunit
(IRX1) see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 487
Score = 117 bits (59), Expect = 4e-024
Identities = 215/267 (80%)
Strand = Plus / Minus
Query: 2028 acatccagtacccacataaattgggccctggataccatccaaacctttcatgttgatatc 2087
|||||||||||||||||| | ||| || ||||| |||||||| || ||||||||||||||
Sbjct: 269 acatccagtacccacatacactggcccttggatgccatccaatcccttcatgttgatatc 210
Query: 2088 gaaaaagacaacatttctgttagcatatcgatcatggcgatcaatcccatcaaatctttg 2147
||| || ||| |||| || ||||||||||| |||||| || ||||| || || ||
Sbjct: 209 gaagaacacagtgtttcgattggcatatcgatcgctgcgatcgataccatcgaacctctg 150
Query: 2148 aggaaactgcacatagcaaactttctttccaagcaaaggatccatcataaaacacattgc 2207
|| |||||||| ||||| || ||| |||||| | ||||||||||||||| ||||||||
Sbjct: 149 tgggaactgcacgtagcacacgttccttccaacctcaggatccatcataaagcacattgc 90
Query: 2208 ttcctttatagccttactattattgatatagtgatcacaatccaagttcagcaaataagg 2267
||| | ||||| || ||||| | ||||||||||||||||||||||||| || ||
Sbjct: 89 ttcgcgaacggccttgctgttattaacgtagtgatcacaatccaagttcagcaggtatgg 30
Query: 2268 agcattagttagtacagcagagactcg 2294
|| || || ||||| |||||||||||
Sbjct: 29 ggcgttcgtaagtacggcagagactcg 3
>gb|BI202889.1|BI202889 NXPV_091_H09_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_091_H09 5' similar to Arabidopsis
thaliana sequence At5g05170 cellulose synthase catalytic
subunit (Ath-B) see
http://mips.gsf.de/proj/thal/db/index.html, mRNA sequence
Length = 537
Score = 117 bits (59), Expect = 4e-024
Identities = 104/119 (87%)
Strand = Plus / Minus
Query: 1536 gtgcatcttaaacccagtaagaatatcttctgtgactgatccataaatccaaccaatatc 1595
||||||||| || ||||| ||||| || ||||||||||||||||| ||||| |||| ||
Sbjct: 250 gtgcatcttgaatccagtcagaatgtcctctgtgactgatccatagatccatccaagctc 191
Query: 1596 ttttccccagcctgttttgtcttcatatccacaactgatgacatgtatagcttccttca 1654
||||||||| | |||||||||||||||||||| ||||||||||| ||||| |||||||
Sbjct: 190 ttttccccattccgttttgtcttcatatccacagctgatgacatgaatagcctccttca 132
Score = 48.1 bits (24), Expect = 0.003
Identities = 48/56 (85%)
Strand = Plus / Minus
Query: 1687 ccaccattctcaagaagtgtggatgcaacaaaaactgaagactggccaaatttctt 1742
||||||||||| | || |||||| ||||||| |||||||||||||||| |||||
Sbjct: 99 ccaccattctccatcagagtggattgaacaaaagctgaagactggccaaacttctt 44
>gb|BX000643.1|BX000643 BX000643 Pinus pinaster xylem Pinus pinaster cDNA clone PPJM13, mRNA
sequence
Length = 520
Score = 113 bits (57), Expect = 6e-023
Identities = 123/145 (84%)
Strand = Plus / Minus
Query: 1510 cagtaaattgaccgccaaccatggcagtgcatcttaaacccagtaagaatatcttctgtg 1569
|||||||| |||||||| || | | ||||||||| || ||||| ||||| || ||||||
Sbjct: 500 cagtaaatggaccgccagcctcgactgtgcatcttgaatccagtcagaatgtcctctgtg 441
Query: 1570 actgatccataaatccaaccaatatcttttccccagcctgttttgtcttcatatccacaa 1629
||||||||||| ||||| |||| ||||||||||| | ||||||||||||||||| ||
Sbjct: 440 actgatccatagatccatccaagctcttttccccattccgttttgtcttcatatccccag 381
Query: 1630 ctgatgacatgtatagcttccttca 1654
||||||||||| ||||| |||||||
Sbjct: 380 ctgatgacatgaatagcctccttca 356
Score = 48.1 bits (24), Expect = 0.003
Identities = 48/56 (85%)
Strand = Plus / Minus
Query: 1687 ccaccattctcaagaagtgtggatgcaacaaaaactgaagactggccaaatttctt 1742
||||||||||| | || |||||| ||||||| |||||||||||||||| |||||
Sbjct: 322 ccaccattctccatcagagtggattgaacaaaagctgaagactggccaaacttctt 267
>gb|BX249248.1|BX249248 BX249248 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP021G11 similar to Cellulose synthase
catalytic subunit, mRNA sequence
Length = 708
Score = 111 bits (56), Expect = 2e-022
Identities = 110/128 (85%)
Strand = Plus / Minus
Query: 2029 catccagtacccacataaattgggccctggataccatccaaacctttcatgttgatatcg 2088
|||||||| |||||||| | ||| |||||||| ||||| | ||| |||||||||||||||
Sbjct: 131 catccagtccccacatacactggcccctggatgccatctagacccttcatgttgatatcg 72
Query: 2089 aaaaagacaacatttctgttagcatatcgatcatggcgatcaatcccatcaaatctttga 2148
|| || ||| |||||||| ||||||||||||||||||||||| ||||| ||||| |||
Sbjct: 71 aagaaaacagtgtttctgtttgcatatcgatcatggcgatcaataccatcgaatctctga 12
Query: 2149 ggaaactg 2156
|| |||||
Sbjct: 11 gggaactg 4
>gb|DR059426.1|DR059426 RTNIT1_17_D03.g1_A029 Roots minus nitrogen Pinus taeda cDNA clone
RTNIT1_17_D03_A029 5', mRNA sequence
Length = 862
Score = 111 bits (56), Expect = 2e-022
Identities = 344/440 (78%)
Strand = Plus / Minus
Query: 2422 acctgaatcattccaggatgatcacggacattatttccgggccatggagttccatcctgc 2481
||||| ||||| |||||||| || | | ||||||||| ||||| |||| ||||| |||
Sbjct: 529 acctgtatcatcccaggatggtccctggtattatttccaggccagagagtgccatcttgc 470
Query: 2482 attgtccatccttcctcaggaaccttttgggctttagcaaccaaggcattgattctgacc 2541
|| ||| || || ||||| ||||| ||||| || ||||| | |||||||| | |||
Sbjct: 469 ataacccagccctcttcaggtaccttctgggccttcgcaacaagcgcattgatccgaacc 410
Query: 2542 ttgaattcctcatactctctcttcattgctctccgttctctaacaaagtttggcgccacc 2601
|||||||| ||||| |||||||||||||| ||||| ||| | ||||| | ||| ||
Sbjct: 409 ttgaattcttcatattctctcttcattgccctccgctcttttacaaaagtaggctgtact 350
Query: 2602 ttgtctttcaggtagtctatcttctgttggaagtaccactctggagcacgaggctcaagg 2661
||||| |||| ||| || || ||| || ||||||||||||||||| | || |||| |
Sbjct: 349 ttgtccttcaagtaatccattttcagtgaaaagtaccactctggagctctgggttcaatg 290
Query: 2662 ctatatcttttgcagaaaggaacccatttctttgcaaattcagatgtttcagacaatgct 2721
|| | ||||||| || || ||||||||| |||||||||| || ||||| || | | |
Sbjct: 289 ttaaactttttgcaaaatggcacccatttccttgcaaattctgaagtttctgaaagggat 230
Query: 2722 tcaaatgtcagcatggcagcaccatcatcagaaacgtagcacgaaaccttatcaactgga 2781
|| || |||| |||||| || ||||| |||||||| ||||| |||||||| ||||| |||
Sbjct: 229 tcgaaagtcaacatggctgctccatcgtcagaaacatagcaggaaaccttgtcaacagga 170
Query: 2782 taatccaccgaaaggatagatagaacagtattagcagtgaccaatggaggttccttcaag 2841
|||||||| || || || || |||||||| || ||||| || | ||||| ||||| ||
Sbjct: 169 taatccacagacagaatcgacagaacagtgtttgcagtaacaagaggaggctcctttaaa 110
Query: 2842 ggatcaaccgtactgacaaa 2861
|| ||||| |||||||||||
Sbjct: 109 gggtcaactgtactgacaaa 90
Score = 58.0 bits (29), Expect = 3e-006
Identities = 44/49 (89%)
Strand = Plus / Minus
Query: 2218 gccttactattattgatatagtgatcacaatccaagttcagcaaataag 2266
|||||||||||||| ||||||||||||||||| | ||||| || |||||
Sbjct: 845 gccttactattatttatatagtgatcacaatcgaggttcaacagataag 797
>gb|AW984889.1|AW984889 NXNV_100_C02_F Nsf Xylem Normal wood Vertical Pinus taeda cDNA clone
NXNV_100_C02 5' similar to Arabidopsis thaliana sequence
At5g05170 cellulose synthase catalytic subunit (Ath-B)
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 405
Score = 107 bits (54), Expect = 3e-021
Identities = 102/119 (85%)
Strand = Plus / Minus
Query: 1536 gtgcatcttaaacccagtaagaatatcttctgtgactgatccataaatccaaccaatatc 1595
||||||||| || ||||| ||||| | |||||||||||||||| ||||| |||| ||
Sbjct: 305 gtgcatcttgaatccagtcagaatgtnnnctgtgactgatccatagatccatccaagctc 246
Query: 1596 ttttccccagcctgttttgtcttcatatccacaactgatgacatgtatagcttccttca 1654
||||||||| | |||||||||||||||||||| ||||||||||| ||||| |||||||
Sbjct: 245 ttttccccattccgttttgtcttcatatccacagctgatgacatgaatagcctccttca 187
Score = 48.1 bits (24), Expect = 0.003
Identities = 48/56 (85%)
Strand = Plus / Minus
Query: 1687 ccaccattctcaagaagtgtggatgcaacaaaaactgaagactggccaaatttctt 1742
||||||||||| | || |||||| ||||||| |||||||||||||||| |||||
Sbjct: 154 ccaccattctccatcagagtggattgaacaaaagctgaagactggccaaacttctt 99
>gb|BQ196805.1|BQ196805 NXLV105_E07_F NXLV (Nsf Xylem Late wood Vertical) Pinus taeda cDNA
clone NXLV105_E07 5' similar to Arabidopsis thaliana
sequence At4g32410 cellulose synthase catalytic subunit
(RSW1) see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 758
Score = 107 bits (54), Expect = 3e-021
Identities = 102/118 (86%)
Strand = Plus / Minus
Query: 1537 tgcatcttaaacccagtaagaatatcttctgtgactgatccataaatccaaccaatatct 1596
||||| ||||||||||| | ||||||||||||||| || ||||||||||| ||||| |||
Sbjct: 239 tgcattttaaacccagtcaaaatatcttctgtgacagaaccataaatccacccaatctct 180
Query: 1597 tttccccagcctgttttgtcttcatatccacaactgatgacatgtatagcttccttca 1654
|||||||| ||| ||||||||||||||||| ||||| ||||| || ||||| ||||
Sbjct: 179 tttccccattctgacttgtcttcatatccacagctgataacatgaatggcttctttca 122
>gb|BX682714.1|BX682714 BX682714 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone 120E04 similar to Cellulose synthase, mRNA
sequence
Length = 431
Score = 107 bits (54), Expect = 3e-021
Identities = 102/118 (86%)
Strand = Plus / Minus
Query: 1537 tgcatcttaaacccagtaagaatatcttctgtgactgatccataaatccaaccaatatct 1596
||||| ||||||||||| | ||||||||||||||| || ||||||||||| ||||| |||
Sbjct: 326 tgcattttaaacccagtcaaaatatcttctgtgacagaaccataaatccacccaatctct 267
Query: 1597 tttccccagcctgttttgtcttcatatccacaactgatgacatgtatagcttccttca 1654
|||||||| ||| ||||||||||||||||| ||||| ||||| || ||||| ||||
Sbjct: 266 tttccccattctgacttgtcttcatatccacagctgataacatgaatggcttctttca 209
>gb|CO201610.1|CO201610 RTCNT2_7_A01.b1_A029 Root control 2 (late) Pinus taeda cDNA clone
RTCNT2_7_A01_A029 3', mRNA sequence
Length = 681
Score = 107 bits (54), Expect = 3e-021
Identities = 102/118 (86%)
Strand = Plus / Plus
Query: 1537 tgcatcttaaacccagtaagaatatcttctgtgactgatccataaatccaaccaatatct 1596
||||| ||||||||||| | ||||||||||||||| || ||||||||||| ||||| |||
Sbjct: 182 tgcattttaaacccagtcaaaatatcttctgtgacagaaccataaatccacccaatctct 241
Query: 1597 tttccccagcctgttttgtcttcatatccacaactgatgacatgtatagcttccttca 1654
|||||||| ||| ||||||||||||||||| ||||| ||||| || ||||| ||||
Sbjct: 242 tttccccattctgacttgtcttcatatccacagctgataacatgaatggcttctttca 299
>gb|CO369942.1|CO369942 RTK1_55_A04.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_55_A04_A029 5', mRNA sequence
Length = 695
Score = 107 bits (54), Expect = 3e-021
Identities = 102/118 (86%)
Strand = Plus / Minus
Query: 1537 tgcatcttaaacccagtaagaatatcttctgtgactgatccataaatccaaccaatatct 1596
||||| ||||||||||| | ||||||||||||||| || ||||||||||| ||||| |||
Sbjct: 191 tgcattttaaacccagtcaaaatatcttctgtgacagaaccataaatccacccaatctct 132
Query: 1597 tttccccagcctgttttgtcttcatatccacaactgatgacatgtatagcttccttca 1654
|||||||| ||| ||||||||||||||||| ||||| ||||| || ||||| ||||
Sbjct: 131 tttccccattctgacttgtcttcatatccacagctgataacatgaatggcttctttca 74
>gb|DR686101.1|DR686101 EST1076179 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWABC32 3' end, mRNA sequence
Length = 737
Score = 107 bits (54), Expect = 3e-021
Identities = 102/118 (86%)
Strand = Plus / Minus
Query: 1537 tgcatcttaaacccagtaagaatatcttctgtgactgatccataaatccaaccaatatct 1596
||||| ||||||||||| | ||||||||||||||| || ||||||||||| ||||| |||
Sbjct: 617 tgcattttaaacccagtcaaaatatcttctgtgacagaaccataaatccacccaatctct 558
Query: 1597 tttccccagcctgttttgtcttcatatccacaactgatgacatgtatagcttccttca 1654
|||||||| ||| ||||||||||||||||| ||||| ||||| || ||||| ||||
Sbjct: 557 tttccccattctgacttgtcttcatatccacagctgataacatgaatggcttctttca 500
Score = 91.7 bits (46), Expect = 2e-016
Identities = 121/146 (82%)
Strand = Plus / Minus
Query: 2035 gtacccacataaattgggccctggataccatccaaacctttcatgttgatatcgaaaaag 2094
||||||||||||| || || ||||||||||| |||||| ||| | ||||||| || ||
Sbjct: 149 gtacccacataaacaggcccttggataccatcgaaacctctcaaggtgatatcaaagaac 90
Query: 2095 acaacatttctgttagcatatcgatcatggcgatcaatcccatcaaatctttgaggaaac 2154
||| || | |||||||||||||| || |||||||| ||||||||||| |||||||||
Sbjct: 89 acagtgttacgattagcatatcgatcgtgtcgatcaatgccatcaaatctctgaggaaac 30
Query: 2155 tgcacatagcaaactttctttccaag 2180
|| ||||||||| |||||| |||||
Sbjct: 29 tgtacatagcaagttttcttcccaag 4
>gb|AW985306.1|AW985306 NXNV_135_F04_F Nsf Xylem Normal wood Vertical Pinus taeda cDNA clone
NXNV_135_F04 5' similar to Arabidopsis thaliana sequence
At5g44030 cellulose synthase catalytic subunit-like
protein see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 418
Score = 105 bits (53), Expect = 1e-020
Identities = 114/135 (84%)
Strand = Plus / Minus
Query: 2029 catccagtacccacataaattgggccctggataccatccaaacctttcatgttgatatcg 2088
|||||||| |||||||| | ||| |||||||| ||||| | ||| |||||||||||||||
Sbjct: 135 catccagtccccacatacactggcccctggatgccatctagacccttcatgttgatatcg 76
Query: 2089 aaaaagacaacatttctgttagcatatcgatcatggcgatcaatcccatcaaatctttga 2148
|| || ||| |||||||| ||||||||||||||||||||||| ||||| ||| |||
Sbjct: 75 aagaaaacagtgtttctgtttgcatatcgatcatggcgatcaataccatcgaatnnctga 16
Query: 2149 ggaaactgcacatag 2163
|| ||||| ||||||
Sbjct: 15 gggaactgaacatag 1
>gb|DR384721.1|DR384721 RTHG1_4_D04.b1_A029 Roots plus added mercury Pinus taeda cDNA clone
RTHG1_4_D04_A029 3', mRNA sequence
Length = 749
Score = 105 bits (53), Expect = 1e-020
Identities = 218/273 (79%)
Strand = Plus / Plus
Query: 2721 ttcaaatgtcagcatggcagcaccatcatcagaaacgtagcacgaaaccttatcaactgg 2780
|||||| |||| ||| || || |||||||||||||| ||||| ||||| ||||| || ||
Sbjct: 312 ttcaaaagtcaacattgccgctccatcatcagaaacatagcatgaaactttatcgacagg 371
Query: 2781 ataatccaccgaaaggatagatagaacagtattagcagtgaccaatggaggttccttcaa 2840
||||||||| | ||||||||| ||||||||||| || ||||| | ||||| ||||| |
Sbjct: 372 ataatccacggcaaggatagacagaacagtatttgctgtgacaagaggaggctcctttag 431
Query: 2841 gggatcaaccgtactgacaaagaaatcaacaggggcgagttgagaaggatgcccttcctt 2900
||||| || ||||||||||| | ||||||| ||| | ||||| || | ||||| |
Sbjct: 432 aggatccactgtactgacaaaaatatcaacaccggccaactgagatggctctccttctct 491
Query: 2901 gtcaaaccttaaactcagccggtcaagataggtttccctctcgataggaaaccactttgg 2960
||||||||| ||| |||| ||||||||| ||||| | | || || | ||| || ||
Sbjct: 492 gtcaaacctcaaagaaagcctgtcaagatatgtttctcggttaatgggcatccatttagg 551
Query: 2961 aaactggtcaagaatccaagacatggcaaacca 2993
|||||||||||||||||| |||| |||||||||
Sbjct: 552 aaactggtcaagaatccatgacacggcaaacca 584
Score = 67.9 bits (34), Expect = 3e-009
Identities = 105/129 (81%)
Strand = Plus / Plus
Query: 2461 ggccatggagttccatcctgcattgtccatccttcctcaggaaccttttgggctttagca 2520
||||||||||||||||| ||||| |||||||| || || || || || || ||||| ||
Sbjct: 52 ggccatggagttccatcttgcatggtccatccctcttctggcactttntgcgctttggcc 111
Query: 2521 accaaggcattgattctgaccttgaattcctcatactctctcttcattgctctccgttct 2580
|| | ||||| || | || |||| | || ||||| || |||||||||||||||||||||
Sbjct: 112 acaagagcattaatccggatcttgtactcttcatattccctcttcattgctctccgttct 171
Query: 2581 ctaacaaag 2589
||||||||
Sbjct: 172 ttaacaaag 180
>gb|BV079717.1| Pp_CesA7 Pinus pinaster megagametophytes Pinus pinaster STS genomic,
sequence tagged site
Length = 560
Score = 93.7 bits (47), Expect = 5e-017
Identities = 125/151 (82%)
Strand = Plus / Minus
Query: 2110 gcatatcgatcatggcgatcaatcccatcaaatctttgaggaaactgcacatagcaaact 2169
||||||||||| ||||||||| ||||| || ||||| || |||||||| ||||| ||
Sbjct: 195 gcatatcgatcgctgcgatcaataccatcgaacctttgtgggaactgcacgtagcacacg 136
Query: 2170 ttctttccaagcaaaggatccatcataaaacacattgcttcctttatagccttactatta 2229
||| |||||| | ||||||||||||||| ||||||||||| | ||||| || |||
Sbjct: 135 ttccttccaacctcaggatccatcataaagcacattgcttcgcgaacggccttgctgtta 76
Query: 2230 ttgatatagtgatcacaatccaagttcagca 2260
|||| |||||||||||||||||||||||||
Sbjct: 75 ttgacgtagtgatcacaatccaagttcagca 45
Score = 58.0 bits (29), Expect = 3e-006
Identities = 50/57 (87%)
Strand = Plus / Minus
Query: 2028 acatccagtacccacataaattgggccctggataccatccaaacctttcatgttgat 2084
|||||||||||||||||| | ||| || ||||| |||||||| || |||||||||||
Sbjct: 394 acatccagtacccacatacactggcccttggatgccatccaatcccttcatgttgat 338
>gb|BF186171.1|BF186171 NXCI_133_H05_F NXCI (Nsf Xylem Compression wood Inclined) Pinus taeda
cDNA clone NXCI_133_H05 5' similar to Arabidopsis
thaliana sequence At5g17420 cellulose synthase catalytic
subunit (IRX3) see
http://mips.gsf.de/proj/thal/db/index.html, mRNA sequence
Length = 209
Score = 89.7 bits (45), Expect = 8e-016
Identities = 78/89 (87%)
Strand = Plus / Minus
Query: 2236 tagtgatcacaatccaagttcagcaaataaggagcattagttagtacagcagagactcgg 2295
||||||||||||||||||||||||| || || || || || ||||| |||||||||||
Sbjct: 101 tagtgatcacaatccaagttcagcaggtatggggcgttcgtcagtacggcagagactcga 42
Query: 2296 accaatgcattcatagcaccagccttctt 2324
|||||||||||||| ||||| ||||||||
Sbjct: 41 accaatgcattcatggcaccggccttctt 13
>gb|CF672886.1|CF672886 RTCNT1_74_D05.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_74_D05_A029 5', mRNA sequence
Length = 763
Score = 89.7 bits (45), Expect = 8e-016
Identities = 204/257 (79%)
Strand = Plus / Minus
Query: 1393 gggcagtggttgctgaagaaaatttcaattgaaccaagagcccaccgaagaacctggtga 1452
|||||||| ||||||| || |||||||| ||||| | ||||| |||||||| |||||
Sbjct: 498 gggcagtgcctgctgaataagatttcaatagaacccaatgcccaacgaagaacttggtgc 439
Query: 1453 agacgatcggaaagattgagaggtgcggaacctttgaaggcggcccgtttaggtatgcag 1512
|||||||| || ||||||| ||| || || || ||||| || | | || || ||||||
Sbjct: 438 agacgatctgatagattgataggagcagaccccttgaatgctggtctcttgggcatgcag 379
Query: 1513 taaattgaccgccaaccatggcagtgcatcttaaacccagtaagaatatcttctgtgact 1572
||||| || ||||| || ||||||||||||| || || || ||||| |||||||| ||
Sbjct: 378 taaatggagcgccatcctcggcagtgcatcttgaaacctgttagaatgtcttctgtcaca 319
Query: 1573 gatccataaatccaaccaatatcttttccccagcctgttttgtcttcatatccacaactg 1632
|| ||||| ||||| || | ||||| ||||| | ||||| ||||| || ||||| |||
Sbjct: 318 gaaccatagatccatccgacctctttcccccattcggttttctcttcgtagccacagctg 259
Query: 1633 atgacatgtatagcttc 1649
|| ||||||||||||||
Sbjct: 258 atcacatgtatagcttc 242
>gb|CX646526.1|CX646526 COLD1_9_H07.g1_A029 Root cold Pinus taeda cDNA clone COLD1_9_H07_A029
5', mRNA sequence
Length = 853
Score = 89.7 bits (45), Expect = 8e-016
Identities = 204/257 (79%)
Strand = Plus / Minus
Query: 1393 gggcagtggttgctgaagaaaatttcaattgaaccaagagcccaccgaagaacctggtga 1452
|||||||| ||||||| || |||||||| ||||| | ||||| |||||||| |||||
Sbjct: 279 gggcagtgcctgctgaataagatttcaatagaacccaatgcccaacgaagaacttggtgc 220
Query: 1453 agacgatcggaaagattgagaggtgcggaacctttgaaggcggcccgtttaggtatgcag 1512
|||||||| || ||||||| ||| || || || ||||| || | | || || ||||||
Sbjct: 219 agacgatctgatagattgataggagcagaccccttgaatgctggtctcttgggcatgcag 160
Query: 1513 taaattgaccgccaaccatggcagtgcatcttaaacccagtaagaatatcttctgtgact 1572
||||| || ||||| || ||||||||||||| || || || ||||| |||||||| ||
Sbjct: 159 taaatggagcgccatcctcggcagtgcatcttgaaacctgttagaatgtcttctgtcaca 100
Query: 1573 gatccataaatccaaccaatatcttttccccagcctgttttgtcttcatatccacaactg 1632
|| ||||| ||||| || | ||||| ||||| | ||||| ||||| || |||||| ||
Sbjct: 99 gaaccatagatccatccgacctctttcccccattcggttttctcttcgtagccacaaatg 40
Query: 1633 atgacatgtatagcttc 1649
|| ||||||||||||||
Sbjct: 39 atcacatgtatagcttc 23
Score = 69.9 bits (35), Expect = 7e-010
Identities = 62/71 (87%)
Strand = Plus / Minus
Query: 1108 cctccaatgacccaaaactgctcgtttctccaccagtcatcgatgcctacaccactccat 1167
|||||||| ||||||||||| ||||| |||||||| || ||||||| || |||||||||
Sbjct: 567 cctccaatcacccaaaactgttcgttcctccaccattcttcgatgctcactccactccat 508
Query: 1168 ctcatttccag 1178
|||| ||||||
Sbjct: 507 ctcagttccag 497
Score = 56.0 bits (28), Expect = 1e-005
Identities = 43/48 (89%)
Strand = Plus / Minus
Query: 970 agggtcgtccatttgaatgtgtacagctctgagaactcctcgtcgtct 1017
||||||||||||||||||| |||||||||| |||||| | |||||||
Sbjct: 705 agggtcgtccatttgaatgcgtacagctctccgaactcattgtcgtct 658
>gb|DR054410.1|DR054410 RTCA1_17_D10.b1_A029 Roots minus calcium Pinus taeda cDNA clone
RTCA1_17_D10_A029 3', mRNA sequence
Length = 821
Score = 89.7 bits (45), Expect = 8e-016
Identities = 204/257 (79%)
Strand = Plus / Plus
Query: 1393 gggcagtggttgctgaagaaaatttcaattgaaccaagagcccaccgaagaacctggtga 1452
|||||||| ||||||| || |||||||| ||||| | ||||| |||||||| |||||
Sbjct: 453 gggcagtgcctgctgaataagatttcaatagaacccaatgcccaacgaagaacttggtgc 512
Query: 1453 agacgatcggaaagattgagaggtgcggaacctttgaaggcggcccgtttaggtatgcag 1512
|||||||| || ||||||| ||| || || || ||||| || | | || || ||||||
Sbjct: 513 agacgatctgatagattgataggagcagaccccttgaatgctggtctcttgggcatgcag 572
Query: 1513 taaattgaccgccaaccatggcagtgcatcttaaacccagtaagaatatcttctgtgact 1572
||||| || ||||| || ||||||||||||| || || || ||||| |||||||| ||
Sbjct: 573 taaatggagcgccatcctcggcagtgcatcttgaaacctgttagaatgtcttctgtcaca 632
Query: 1573 gatccataaatccaaccaatatcttttccccagcctgttttgtcttcatatccacaactg 1632
|| ||||| ||||| || | ||||| ||||| | ||||| ||||| || ||||| |||
Sbjct: 633 gaaccatagatccatccgacctctttcccccattcggttttctcttcgtagccacagctg 692
Query: 1633 atgacatgtatagcttc 1649
|| ||||||||||||||
Sbjct: 693 atcacatgtatagcttc 709
Score = 69.9 bits (35), Expect = 7e-010
Identities = 62/71 (87%)
Strand = Plus / Plus
Query: 1108 cctccaatgacccaaaactgctcgtttctccaccagtcatcgatgcctacaccactccat 1167
|||||||| ||||||||||| ||||| |||||||| || ||||||| || |||||||||
Sbjct: 165 cctccaatcacccaaaactgttcgttcctccaccattcttcgatgctcactccactccat 224
Query: 1168 ctcatttccag 1178
|||| ||||||
Sbjct: 225 ctcagttccag 235
Score = 56.0 bits (28), Expect = 1e-005
Identities = 43/48 (89%)
Strand = Plus / Plus
Query: 970 agggtcgtccatttgaatgtgtacagctctgagaactcctcgtcgtct 1017
||||||||||||||||||| |||||||||| |||||| | |||||||
Sbjct: 27 agggtcgtccatttgaatgcgtacagctctccgaactcattgtcgtct 74
>gb|DR110920.1|DR110920 RTS1_14_B08.b1_A029 Roots minus sulfur Pinus taeda cDNA clone
RTS1_14_B08_A029 3', mRNA sequence
Length = 632
Score = 89.7 bits (45), Expect = 8e-016
Identities = 204/257 (79%)
Strand = Plus / Plus
Query: 1393 gggcagtggttgctgaagaaaatttcaattgaaccaagagcccaccgaagaacctggtga 1452
|||||||| ||||||| || |||||||| ||||| | ||||| |||||||| |||||
Sbjct: 247 gggcagtgcctgctgaataagatttcaatagaacccaatgcccaacgaagaacttggtgc 306
Query: 1453 agacgatcggaaagattgagaggtgcggaacctttgaaggcggcccgtttaggtatgcag 1512
|||||||| || ||||||| ||| || || || ||||| || | | || || ||||||
Sbjct: 307 agacgatctgatagattgataggagcagaccccttgaatgctggtctcttgggcatgcag 366
Query: 1513 taaattgaccgccaaccatggcagtgcatcttaaacccagtaagaatatcttctgtgact 1572
||||| || ||||| || ||||||||||||| || || || ||||| |||||||| ||
Sbjct: 367 taaatggagcgccaccctcggcagtgcatcttgaaacctgttagaatgtcttctgtcaca 426
Query: 1573 gatccataaatccaaccaatatcttttccccagcctgttttgtcttcatatccacaactg 1632
|| ||||| ||||| || | ||||| ||||| | ||||| ||||| || ||||| |||
Sbjct: 427 gaaccatagatccatccgacctctttcccccattcggttttctcttcgtagccacagctg 486
Query: 1633 atgacatgtatagcttc 1649
|| ||||||||||||||
Sbjct: 487 atcacatgtatagcttc 503
>dbj|BD235989.1| Materials and method for modification of plant cell wall
polysaccharides
Length = 619
Score = 89.7 bits (45), Expect = 8e-016
Identities = 204/257 (79%)
Strand = Plus / Minus
Query: 1393 gggcagtggttgctgaagaaaatttcaattgaaccaagagcccaccgaagaacctggtga 1452
|||||||| ||||||| || |||||||| ||||| | ||||| |||||||| |||||
Sbjct: 378 gggcagtgcctgctgaataagatttcaatagaacccaatgcccaacgaagaacttggtgc 319
Query: 1453 agacgatcggaaagattgagaggtgcggaacctttgaaggcggcccgtttaggtatgcag 1512
|||||||| || ||||||| ||| || || || ||||| || | | || || ||||||
Sbjct: 318 agacgatctgatagattgataggagcagaccccttgaatgctggtctcttgggcatgcag 259
Query: 1513 taaattgaccgccaaccatggcagtgcatcttaaacccagtaagaatatcttctgtgact 1572
||||| || ||||| || ||||||||||||| || || || ||||| |||||||| ||
Sbjct: 258 taaatggagcgccatcctcggcagtgcatcttgaaacctgttagaatgtcttctgtcaca 199
Query: 1573 gatccataaatccaaccaatatcttttccccagcctgttttgtcttcatatccacaactg 1632
|| ||||| ||||| || | ||||| ||||| | ||||| ||||| || ||||| |||
Sbjct: 198 gaaccatagatccatccgacctctttcccccattcggttttctcttcgtagccacagctg 139
Query: 1633 atgacatgtatagcttc 1649
|| ||||||||||||||
Sbjct: 138 atcacatgtatagcttc 122
>gb|DR118589.1|DR118589 RTMG1_18_A07.b1_A029 Roots minus magnesium Pinus taeda cDNA clone
RTMG1_18_A07_A029 3', mRNA sequence
Length = 610
Score = 87.7 bits (44), Expect = 3e-015
Identities = 129/156 (82%), Gaps = 1/156 (0%)
Strand = Plus / Plus
Query: 1483 cctttgaaggcggcccgtttaggtatgcagtaaattgaccgccaaccatggcagtgcatc 1542
|||||||| || || ||||| || || |||||||| |||||||| || | |||||||
Sbjct: 456 cctttgaatgctgctcgtttgggcatacagtaaatggaccgccagcctcgagtgtgcatc 515
Query: 1543 ttaaacccagtaagaatatcttctgtgactgatccataaatccaaccaatatcttttccc 1602
|| || ||||| ||||| || ||||||||||||||||| ||||| |||| |||||||||
Sbjct: 516 ttgaatccagtcagaatgtcctctgtgactgatccatagatccatccaagctcttttccc 575
Query: 1603 cagcctgttttgtcttcatatccacaactgatgaca 1638
|| | | |||||||||||||||||| |||||||||
Sbjct: 576 cattccg-tttgtcttcatatccacagctgatgaca 610
Score = 52.0 bits (26), Expect = 2e-004
Identities = 92/114 (80%)
Strand = Plus / Plus
Query: 1095 atgtgaagacacgcctccaatgacccaaaactgctcgtttctccaccagtcatcgatgcc 1154
||||| ||| || |||||||| ||||| ||||| || |||| |||||| || || ||||
Sbjct: 68 atgtgcagaaacccctccaataacccagaactgttcatttcgccaccattcttcaatgct 127
Query: 1155 tacaccactccatctcatttccaggatgctcgtagcaaaaatgcagatgaaaag 1208
|| |||||||| ||||||||||| || | || |||||||| ||||||||||
Sbjct: 128 cactccactccacctcatttccagaataccagtggcaaaaattgagatgaaaag 181
>gb|DR162195.1|DR162195 RTFE1_16_G12.b1_A029 Roots minus iron Pinus taeda cDNA clone
RTFE1_16_G12_A029 3', mRNA sequence
Length = 626
Score = 87.7 bits (44), Expect = 3e-015
Identities = 188/236 (79%)
Strand = Plus / Plus
Query: 1513 taaattgaccgccaaccatggcagtgcatcttaaacccagtaagaatatcttctgtgact 1572
||||| |||||||| |||||||| ||||| || || || || | ||||| ||||| ||
Sbjct: 90 taaatagaccgccatccatggcaatgcattttgaagcctgtcaatatatcctctgtaacc 149
Query: 1573 gatccataaatccaaccaatatcttttccccagcctgttttgtcttcatatccacaactg 1632
|| ||||||||||| |||| || ||||||||| ||||||| |||||||| ||||| ||
Sbjct: 150 gaaccataaatccatccaacctcctttccccagtctgttttatcttcatagccacagcta 209
Query: 1633 atgacatgtatagcttccttcagaagagaagctggactggcactcttcagggttccacca 1692
|| ||||| || ||||| || ||||| ||||| ||||| ||| | | | ||||||
Sbjct: 210 ataacatgaatggcttcttttagaagtgaagcaggactagcattttgtggtacaccacca 269
Query: 1693 ttctcaagaagtgtggatgcaacaaaaactgaagactggccaaatttcttttccaa 1748
||||||||||| || || |||||||| || | ||||| |||||||||||||||||
Sbjct: 270 ttctcaagaagagtagaggcaacaaagacaggggactgtccaaatttcttttccaa 325
Score = 73.8 bits (37), Expect = 5e-011
Identities = 109/133 (81%)
Strand = Plus / Plus
Query: 1939 caccactttggccagcagttgcaagttcttgatggtggcttctttgttttgggagcatcg 1998
||||| ||||||||||| || ||||| |||| |||| ||||| | ||| ||||||||
Sbjct: 492 caccattttggccagcaattacaagtccttgttggttccttctcagctttaggagcatca 551
Query: 1999 tagccatataatgcctgccttctgaagacacatccagtacccacataaattgggccctgg 2058
| ||||| | ||| ||||||||||| |||||||||||||| ||||| || || |||||
Sbjct: 552 aatccataaagtgcttgccttctgaaaacacatccagtaccaacatatatgggtccctga 611
Query: 2059 ataccatccaaac 2071
|| ||||||||||
Sbjct: 612 atgccatccaaac 624
>gb|CO169549.1|CO169549 NDL1_7_F09.g1_A029 Needles control Pinus taeda cDNA clone
NDL1_7_F09_A029 5', mRNA sequence
Length = 802
Score = 83.8 bits (42), Expect = 5e-014
Identities = 201/254 (79%)
Strand = Plus / Minus
Query: 1393 gggcagtggttgctgaagaaaatttcaattgaaccaagagcccaccgaagaacctggtga 1452
|||||||| ||||||| || |||||||| ||||| | ||||| |||||||| |||||
Sbjct: 256 gggcagtgcctgctgaataagatttcaatagaacccaatgcccaacgaagaacttggtgc 197
Query: 1453 agacgatcggaaagattgagaggtgcggaacctttgaaggcggcccgtttaggtatgcag 1512
|||||||| || ||||||| ||| || || || ||||| || | | || || ||||||
Sbjct: 196 agacgatctgatagattgataggagcagaccccttgaatgctggtctcttgggcatgcag 137
Query: 1513 taaattgaccgccaaccatggcagtgcatcttaaacccagtaagaatatcttctgtgact 1572
||||| || ||||| || ||||||||||||| || || || ||||| |||||||| ||
Sbjct: 136 taaatggagcgccatcctcggcagtgcatcttgaaacctgttagaatgtcttctgtcaca 77
Query: 1573 gatccataaatccaaccaatatcttttccccagcctgttttgtcttcatatccacaactg 1632
|| ||||| ||||| || | ||||| ||||| | ||||| ||||| || ||||| |||
Sbjct: 76 gaaccatagatccatccgacctctttcccccattcggttttctcttcgtagccacagctg 17
Query: 1633 atgacatgtatagc 1646
|| |||||||||||
Sbjct: 16 atcacatgtatagc 3
Score = 69.9 bits (35), Expect = 7e-010
Identities = 62/71 (87%)
Strand = Plus / Minus
Query: 1108 cctccaatgacccaaaactgctcgtttctccaccagtcatcgatgcctacaccactccat 1167
|||||||| ||||||||||| ||||| |||||||| || ||||||| || |||||||||
Sbjct: 544 cctccaatcacccaaaactgttcgttcctccaccattcttcgatgctcactccactccat 485
Query: 1168 ctcatttccag 1178
|||| ||||||
Sbjct: 484 ctcagttccag 474
Score = 56.0 bits (28), Expect = 1e-005
Identities = 43/48 (89%)
Strand = Plus / Minus
Query: 970 agggtcgtccatttgaatgtgtacagctctgagaactcctcgtcgtct 1017
||||||||||||||||||| |||||||||| |||||| | |||||||
Sbjct: 682 agggtcgtccatttgaatgcgtacagctctccgaactcattgtcgtct 635
>gb|CF478733.1|CF478733 RTWW3_16_G10.g1_A022 Well-watered loblolly pine roots WW3 Pinus
taeda cDNA clone RTWW3_16_G10_A022 5', mRNA sequence
Length = 695
Score = 81.8 bits (41), Expect = 2e-013
Identities = 101/121 (83%)
Strand = Plus / Minus
Query: 763 gaccagacaatgacaatcgttggcgtcctgttctgcctcccaaccagacccttgaggaac 822
|||||||||| ||||| || || ||||||||||| | || | || ||| || |||||
Sbjct: 328 gaccagacaacaacaattgtgggtgtcctgttctgtcgtcccatcaaacctttcaggaaa 269
Query: 823 gggtaaagatggacgatcacccaaaatgcaaagaagagcttcccgaacagggggccccat 882
|||||||||||||| ||||||||||| ||||| ||||| || ||||||||||| ||||||
Sbjct: 268 gggtaaagatggacaatcacccaaaacgcaaaaaagagttttccgaacaggggaccccat 209
Query: 883 g 883
|
Sbjct: 208 g 208
>gb|CV031645.1|CV031645 RTNACL1_2_G07.g1_A029 Roots plus added NaCl Pinus taeda cDNA clone
RTNACL1_2_G07_A029 5', mRNA sequence
Length = 796
Score = 81.8 bits (41), Expect = 2e-013
Identities = 101/121 (83%)
Strand = Plus / Minus
Query: 763 gaccagacaatgacaatcgttggcgtcctgttctgcctcccaaccagacccttgaggaac 822
|||||||||| ||||| || || ||||||||||| | || | || ||| || |||||
Sbjct: 600 gaccagacaacaacaattgtgggtgtcctgttctgtcgtcccatcaaacctttcaggaaa 541
Query: 823 gggtaaagatggacgatcacccaaaatgcaaagaagagcttcccgaacagggggccccat 882
|||||||||||||| ||||||||||| ||||| ||||| || ||||||||||| ||||||
Sbjct: 540 gggtaaagatggacaatcacccaaaacgcaaaaaagagttttccgaacaggggaccccat 481
Query: 883 g 883
|
Sbjct: 480 g 480
Score = 63.9 bits (32), Expect = 5e-008
Identities = 77/92 (83%)
Strand = Plus / Minus
Query: 1087 gcaaagagatgtgaagacacgcctccaatgacccaaaactgctcgtttctccaccagtca 1146
||||||||||| | ||||| |||||||||||||| || || || || |||||||| |||
Sbjct: 273 gcaaagagatgagctgacacacctccaatgacccagaattgttcattcctccaccattca 214
Query: 1147 tcgatgcctacaccactccatctcatttccag 1178
|| || || || |||||||||| |||||||||
Sbjct: 213 tcaataccaaccccactccatcgcatttccag 182
>gb|DR096307.1|DR096307 STRR1_27_D08.b1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_27_D08_A033 3', mRNA sequence
Length = 797
Score = 81.8 bits (41), Expect = 2e-013
Identities = 101/121 (83%)
Strand = Plus / Plus
Query: 763 gaccagacaatgacaatcgttggcgtcctgttctgcctcccaaccagacccttgaggaac 822
|||||||||| ||||| || || ||||||||||| | || | || ||| || |||||
Sbjct: 184 gaccagacaacaacaattgtgggtgtcctgttctgtcgtcccatcaaacctttcaggaaa 243
Query: 823 gggtaaagatggacgatcacccaaaatgcaaagaagagcttcccgaacagggggccccat 882
|||||||||||||| ||||||||||| ||||| ||||| || ||||||||||| ||||||
Sbjct: 244 gggtaaagatggacaatcacccaaaacgcaaaaaagagttttccgaacaggggaccccat 303
Query: 883 g 883
|
Sbjct: 304 g 304
>gb|DR096386.1|DR096386 STRR1_27_D08.g1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_27_D08_A033 5', mRNA sequence
Length = 744
Score = 81.8 bits (41), Expect = 2e-013
Identities = 101/121 (83%)
Strand = Plus / Plus
Query: 763 gaccagacaatgacaatcgttggcgtcctgttctgcctcccaaccagacccttgaggaac 822
|||||||||| ||||| || || ||||||||||| | || | || ||| || |||||
Sbjct: 446 gaccagacaacaacaattgtgggtgtcctgttctgtcgtcccatcaaacctttcaggaaa 505
Query: 823 gggtaaagatggacgatcacccaaaatgcaaagaagagcttcccgaacagggggccccat 882
|||||||||||||| ||||||||||| ||||| ||||| || ||||||||||| ||||||
Sbjct: 506 gggtaaagatggacaatcacccaaaacgcaaaaaagagttttccgaacaggggaccccat 565
Query: 883 g 883
|
Sbjct: 566 g 566
>gb|DR101934.1|DR101934 STRR1_76_G04.g1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_76_G04_A033 5', mRNA sequence
Length = 579
Score = 81.8 bits (41), Expect = 2e-013
Identities = 131/161 (81%)
Strand = Plus / Minus
Query: 2017 cttctgaagacacatccagtacccacataaattgggccctggataccatccaaacctttc 2076
|||| ||| ||||| || ||||| ||||| || || ||||| || ||||||| |||||||
Sbjct: 198 cttcggaaaacacaacctgtaccaacatatataggtccctgtattccatccagacctttc 139
Query: 2077 atgttgatatcgaaaaagacaacatttctgttagcatatcgatcatggcgatcaatccca 2136
||||| ||||| || || ||| ||| | || ||||||| |||||| | |||||| |||
Sbjct: 138 atgtttatatcaaagaacacagtattgcgattggcatatctatcatgccaatcaatacca 79
Query: 2137 tcaaatctttgaggaaactgcacatagcaaactttctttcc 2177
||||| || ||||| |||||||||||||| || ||||||||
Sbjct: 78 tcaaacctctgagggaactgcacatagcagaccttctttcc 38
>gb|AW056552.1|AW056552 ST51E06 Pine TriplEx shoot tip library Pinus taeda cDNA clone
ST51E06, mRNA sequence
Length = 389
Score = 79.8 bits (40), Expect = 8e-013
Identities = 80/94 (85%)
Strand = Plus / Minus
Query: 1510 cagtaaattgaccgccaaccatggcagtgcatcttaaacccagtaagaatatcttctgtg 1569
|||||||| || ||||| |||||||||||||| || || ||||| | |||||| ||||||
Sbjct: 94 cagtaaatagaacgccatccatggcagtgcattttgaaaccagtcaaaatatcctctgtg 35
Query: 1570 actgatccataaatccaaccaatatcttttcccc 1603
||||| ||||| ||||| |||| ||||||||||
Sbjct: 34 actgaaccatatatccacccaanntcttttcccc 1
>gb|BE996873.1|BE996873 NXCI_103_E08_F NXCI (Nsf Xylem Compression wood Inclined) Pinus taeda
cDNA clone NXCI_103_E08 5' similar to Arabidopsis
thaliana sequence At5g44030 cellulose synthase catalytic
subunit-like protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA sequence
Length = 363
Score = 79.8 bits (40), Expect = 8e-013
Identities = 187/236 (79%)
Strand = Plus / Minus
Query: 1414 atttcaattgaaccaagagcccaccgaagaacctggtgaagacgatcggaaagattgaga 1473
|||||||| ||||| | ||||| |||||||| ||||| |||||||| || ||||||| |
Sbjct: 269 atttcaatagaacccaatgcccaacgaagaacttggtgcagacgatctgatagattgata 210
Query: 1474 ggtgcggaacctttgaaggcggcccgtttaggtatgcagtaaattgaccgccaaccatgg 1533
|| || || || ||||| || | | || || ||||||||||| || ||||| || ||
Sbjct: 209 ggagcagaccccttgaatgctggtctcttgggcatgcagtaaatggagcgccaccctcgg 150
Query: 1534 cagtgcatcttaaacccagtaagaatatcttctgtgactgatccataaatccaaccaata 1593
||||||||||| || || || ||||| |||||||| || || ||||| ||||| || |
Sbjct: 149 cagtgcatcttgaaacctgttagaatgtcttctgtcacagaaccatagatccatccgacc 90
Query: 1594 tcttttccccagcctgttttgtcttcatatccacaactgatgacatgtatagcttc 1649
||||| ||||| | ||||| ||||| || ||||| ||||| ||||||||||||||
Sbjct: 89 tctttcccccattcggttttctcttcgtagccacagctgatcacatgtatagcttc 34
>gb|BV079716.1| Pp_CesA4 Pinus pinaster megagametophytes Pinus pinaster STS
genomic, sequence tagged site
Length = 489
Score = 79.8 bits (40), Expect = 8e-013
Identities = 130/160 (81%)
Strand = Plus / Plus
Query: 724 cggacccaaagcagcgagaagatcgaagccaggaggatggaccagacaatgacaatcgtt 783
|||||||| |||| |||||||| ||||| || || | |||||||||| ||||| ||
Sbjct: 176 cggacccagagcaaagagaagatagaagcgagaagaacagaccagacaacaacaattgtg 235
Query: 784 ggcgtcctgttctgcctcccaaccagacccttgaggaacgggtaaagatggacgatcacc 843
|| ||||||||||| | || | || ||| || ||||| |||||||||||||| ||||||
Sbjct: 236 ggtgtcctgttctgtcgtcccatcaaacctttcaggaaagggtaaagatggacaatcacc 295
Query: 844 caaaatgcaaagaagagcttcccgaacagggggccccatg 883
||||| ||||| ||||| || || |||||||| |||||||
Sbjct: 296 caaaacgcaaaaaagagttttccyaacaggggaccccatg 335
>gb|BX249614.1|BX249614 BX249614 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP026B12, mRNA sequence
Length = 685
Score = 77.8 bits (39), Expect = 3e-012
Identities = 63/71 (88%)
Strand = Plus / Minus
Query: 1108 cctccaatgacccaaaactgctcgtttctccaccagtcatcgatgcctacaccactccat 1167
|||||||| ||||||||||| ||||| |||||||| || ||||||| ||| |||||||||
Sbjct: 326 cctccaatcacccaaaactgttcgttcctccaccattcttcgatgcttactccactccat 267
Query: 1168 ctcatttccag 1178
|||| ||||||
Sbjct: 266 ctcagttccag 256
Score = 56.0 bits (28), Expect = 1e-005
Identities = 43/48 (89%)
Strand = Plus / Minus
Query: 970 agggtcgtccatttgaatgtgtacagctctgagaactcctcgtcgtct 1017
||||||||||||||||||| |||||||||| |||||| | |||||||
Sbjct: 464 agggtcgtccatttgaatgcgtacagctctccgaactcattgtcgtct 417
>gb|BX254022.1|BX254022 BX254022 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP092C09, mRNA sequence
Length = 690
Score = 77.8 bits (39), Expect = 3e-012
Identities = 63/71 (88%)
Strand = Plus / Minus
Query: 1108 cctccaatgacccaaaactgctcgtttctccaccagtcatcgatgcctacaccactccat 1167
|||||||| ||||||||||| ||||| |||||||| || ||||||| ||| |||||||||
Sbjct: 275 cctccaatcacccaaaactgttcgttcctccaccattcttcgatgcttactccactccat 216
Query: 1168 ctcatttccag 1178
|||| ||||||
Sbjct: 215 ctcagttccag 205
Score = 56.0 bits (28), Expect = 1e-005
Identities = 43/48 (89%)
Strand = Plus / Minus
Query: 970 agggtcgtccatttgaatgtgtacagctctgagaactcctcgtcgtct 1017
||||||||||||||||||| |||||||||| |||||| | |||||||
Sbjct: 413 agggtcgtccatttgaatgcgtacagctctccgaactcattgtcgtct 366
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 494,953
Number of Sequences: 355925
Number of extensions: 494953
Number of successful extensions: 132670
Number of sequences better than 0.5: 246
Number of HSP's better than 0.5 without gapping: 246
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 131916
Number of HSP's gapped (non-prelim): 721
length of query: 3878
length of database: 217,277,237
effective HSP length: 20
effective length of query: 3858
effective length of database: 210,158,737
effective search space: 810792407346
effective search space used: 810792407346
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)