BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 2161272.2.22
         (333 letters)

Database: Pinus_nucl_with_EST.fasta 
           355,925 sequences; 217,277,237 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CO361958.1|CO361958  NDL2_8_E08.b1_A029 Needles control 2...    34   3.4  

>gb|CO361958.1|CO361958 NDL2_8_E08.b1_A029 Needles control 2 Pinus taeda cDNA clone
           NDL2_8_E08_A029 3', mRNA sequence
          Length = 786

 Score = 34.2 bits (17), Expect = 3.4
 Identities = 26/29 (89%)
 Strand = Plus / Plus

                                        
Query: 31  ttggtctctgctggacaactttgaatggt 59
           |||||| ||| |||| |||||||||||||
Sbjct: 376 ttggtcgctgttggataactttgaatggt 404



  Database: Pinus_nucl_with_EST.fasta
    Posted date:  May 2, 2006  3:25 PM
  Number of letters in database: 217,277,237
  Number of sequences in database:  355,925
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 19,486
Number of Sequences: 355925
Number of extensions: 19486
Number of successful extensions: 5049
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 5048
Number of HSP's gapped (non-prelim): 1
length of query: 333
length of database: 217,277,237
effective HSP length: 18
effective length of query: 315
effective length of database: 210,870,587
effective search space: 66424234905
effective search space used: 66424234905
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)