BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 2161072.2.1
(1197 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CF385296.1|CF385296 RTDR1_3_F02.b1_A015 Loblolly pine ro... 80 2e-013
gb|CF393360.1|CF393360 RTDR3_20_B01.g1_A022 Loblolly pine r... 80 2e-013
gb|CF402922.1|CF402922 RTWW1_23_B05.g1_A015 Well-watered lo... 80 2e-013
gb|CF476865.1|CF476865 RTWW3_4_B02.b1_A022 Well-watered lob... 80 2e-013
gb|CF477261.1|CF477261 RTWW3_6_F05.g1_A022 Well-watered lob... 80 2e-013
gb|CX649092.1|CX649092 COLD1_32_H12.g1_A029 Root cold Pinus... 80 2e-013
gb|DR025087.1|DR025087 STRS1_69_B11.g1_A034 Shoot tip pitch... 80 2e-013
gb|DR098589.1|DR098589 STRR1_46_C09.g1_A033 Stem Response R... 80 2e-013
gb|DR167864.1|DR167864 RTPHOS1_21_D05.g1_A029 Roots minus p... 80 2e-013
gb|CF670615.1|CF670615 RTCNT1_51_H09.b1_A029 Root control P... 72 6e-011
gb|DR079640.1|DR079640 RTFEPL1_12_C09.g1_A029 Roots plus ad... 72 6e-011
gb|DR385646.1|DR385646 RTHG1_10_A05.b1_A029 Roots plus adde... 72 6e-011
gb|AY321088.1| Pinus pinaster phenylalanine ammonia-lyase (... 64 1e-008
gb|AY321089.1| Pinus pinaster phenylalanine ammonia-lyase (... 64 1e-008
gb|CF473922.1|CF473922 RTWW2_19_D07.g1_A021 Well-watered lo... 56 3e-006
gb|DR024409.1|DR024409 STRS1_64_F07.g1_A034 Shoot tip pitch... 56 3e-006
gb|AF013482.1|AF013482 Pinus banksiana phenylalanine ammoni... 56 3e-006
gb|AF013485.1|AF013485 Pinus banksiana phenylalanine ammoni... 56 3e-006
gb|AF013484.1|AF013484 Pinus banksiana phenylalanine ammoni... 54 1e-005
gb|BF777444.1|BF777444 NXSI_071_F09_F NXSI (Nsf Xylem Side ... 52 5e-005
gb|AI813128.1|AI813128 23C5 Pine Lambda Zap Xylem library P... 48 8e-004
gb|DR024117.1|DR024117 STRS1_62_B04.g1_A034 Shoot tip pitch... 48 8e-004
gb|DR096094.1|DR096094 STRR1_25_E05.g1_A033 Stem Response R... 48 8e-004
gb|DR018722.1|DR018722 STRS1_25_F11.b1_A034 Shoot tip pitch... 44 0.013
gb|DR024061.1|DR024061 STRS1_62_B04.b1_A034 Shoot tip pitch... 44 0.013
gb|AF013483.1|AF013483 Pinus banksiana phenylalanine ammoni... 44 0.013
gb|CF401338.1|CF401338 RTWW1_11_A01.g1_A015 Well-watered lo... 42 0.052
gb|DR101633.1|DR101633 STRR1_74_E10.g1_A033 Stem Response R... 42 0.052
gb|DR101882.1|DR101882 STRR1_76_B02.g1_A033 Stem Response R... 42 0.052
gb|DR160726.1|DR160726 RTFE1_7_E06.g1_A029 Roots minus iron... 42 0.052
>gb|CF385296.1|CF385296 RTDR1_3_F02.b1_A015 Loblolly pine roots recovering from drought DR1
Pinus taeda cDNA clone RTDR1_3_F02_A015 3', mRNA sequence
Length = 565
Score = 79.8 bits (40), Expect = 2e-013
Identities = 103/122 (84%), Gaps = 2/122 (1%)
Strand = Plus / Plus
Query: 1042 ttgtgctgctccgcgctctgcacgtgggttggtgatgggggtgcccangtactggagctc 1101
||||||||||| |||||||| |||||||| ||||| ||| || | | ||||||||||||
Sbjct: 127 ttgtgctgctcggcgctctggacgtgggt-ggtgacagggctggcgaggtactggagctc 185
Query: 1102 ngagcagtaggaggccatggcgatctcggtgccccttgaagccgtagtccaggctggggt 1161
|| |||||| |||||||| ||||||| |||| |||||||||||||| ||||| ||||
Sbjct: 186 cgatgtgtaggaagccatggctatctcggcgccc-ttgaagccgtagtcgaggctcgggt 244
Query: 1162 tg 1163
||
Sbjct: 245 tg 246
>gb|CF393360.1|CF393360 RTDR3_20_B01.g1_A022 Loblolly pine roots recovering from drought DR3
Pinus taeda cDNA clone RTDR3_20_B01_A022 5', mRNA
sequence
Length = 756
Score = 79.8 bits (40), Expect = 2e-013
Identities = 103/122 (84%), Gaps = 2/122 (1%)
Strand = Plus / Minus
Query: 1042 ttgtgctgctccgcgctctgcacgtgggttggtgatgggggtgcccangtactggagctc 1101
||||||||||| |||||||| |||||||| ||||| ||| || | | ||||||||||||
Sbjct: 541 ttgtgctgctcggcgctctggacgtgggt-ggtgacagggctggcgaggtactggagctc 483
Query: 1102 ngagcagtaggaggccatggcgatctcggtgccccttgaagccgtagtccaggctggggt 1161
|| |||||| |||||||| ||||||| |||| |||||||||||||| ||||| ||||
Sbjct: 482 cgatgtgtaggaagccatggctatctcggcgccc-ttgaagccgtagtcgaggctcgggt 424
Query: 1162 tg 1163
||
Sbjct: 423 tg 422
>gb|CF402922.1|CF402922 RTWW1_23_B05.g1_A015 Well-watered loblolly pine roots WW1 Pinus taeda
cDNA clone RTWW1_23_B05_A015 5', mRNA sequence
Length = 793
Score = 79.8 bits (40), Expect = 2e-013
Identities = 103/122 (84%), Gaps = 2/122 (1%)
Strand = Plus / Minus
Query: 1042 ttgtgctgctccgcgctctgcacgtgggttggtgatgggggtgcccangtactggagctc 1101
||||||||||| |||||||| |||||||| ||||| ||| || | | ||||||||||||
Sbjct: 221 ttgtgctgctcggcgctctggacgtgggt-ggtgacagggctggcgaggtactggagctc 163
Query: 1102 ngagcagtaggaggccatggcgatctcggtgccccttgaagccgtagtccaggctggggt 1161
|| |||||| |||||||| ||||||| |||| |||||||||||||| ||||| ||||
Sbjct: 162 cgatgtgtaggaagccatggctatctcggcgccc-ttgaagccgtagtcgaggctcgggt 104
Query: 1162 tg 1163
||
Sbjct: 103 tg 102
>gb|CF476865.1|CF476865 RTWW3_4_B02.b1_A022 Well-watered loblolly pine roots WW3 Pinus taeda
cDNA clone RTWW3_4_B02_A022 3', mRNA sequence
Length = 561
Score = 79.8 bits (40), Expect = 2e-013
Identities = 103/122 (84%), Gaps = 2/122 (1%)
Strand = Plus / Plus
Query: 1042 ttgtgctgctccgcgctctgcacgtgggttggtgatgggggtgcccangtactggagctc 1101
||||||||||| |||||||| |||||||| ||||| ||| || | | ||||||||||||
Sbjct: 309 ttgtgctgctcggcgctctggacgtgggt-ggtgacagggctggcgaggtactggagctc 367
Query: 1102 ngagcagtaggaggccatggcgatctcggtgccccttgaagccgtagtccaggctggggt 1161
|| |||||| |||||||| ||||||| |||| |||||||||||||| ||||| ||||
Sbjct: 368 cgatgtgtaggaagccatggctatctcggcgccc-ttgaagccgtagtcgaggctcgggt 426
Query: 1162 tg 1163
||
Sbjct: 427 tg 428
>gb|CF477261.1|CF477261 RTWW3_6_F05.g1_A022 Well-watered loblolly pine roots WW3 Pinus taeda
cDNA clone RTWW3_6_F05_A022 5', mRNA sequence
Length = 715
Score = 79.8 bits (40), Expect = 2e-013
Identities = 103/122 (84%), Gaps = 2/122 (1%)
Strand = Plus / Minus
Query: 1042 ttgtgctgctccgcgctctgcacgtgggttggtgatgggggtgcccangtactggagctc 1101
||||||||||| |||||||| |||||||| ||||| ||| || | | ||||||||||||
Sbjct: 490 ttgtgctgctcggcgctctggacgtgggt-ggtgacagggctggcgaggtactggagctc 432
Query: 1102 ngagcagtaggaggccatggcgatctcggtgccccttgaagccgtagtccaggctggggt 1161
|| |||||| |||||||| ||||||| |||| |||||||||||||| ||||| ||||
Sbjct: 431 cgatgtgtaggaagccatggctatctcggcgccc-ttgaagccgtagtcgaggctcgggt 373
Query: 1162 tg 1163
||
Sbjct: 372 tg 371
>gb|CX649092.1|CX649092 COLD1_32_H12.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_32_H12_A029 5', mRNA sequence
Length = 782
Score = 79.8 bits (40), Expect = 2e-013
Identities = 103/122 (84%), Gaps = 2/122 (1%)
Strand = Plus / Minus
Query: 1042 ttgtgctgctccgcgctctgcacgtgggttggtgatgggggtgcccangtactggagctc 1101
||||||||||| |||||||| |||||||| ||||| ||| || | | ||||||||||||
Sbjct: 249 ttgtgctgctcggcgctctggacgtgggt-ggtgacagggctggcgaggtactggagctc 191
Query: 1102 ngagcagtaggaggccatggcgatctcggtgccccttgaagccgtagtccaggctggggt 1161
|| |||||| |||||||| ||||||| |||| |||||||||||||| ||||| ||||
Sbjct: 190 cgatgtgtaggaagccatggctatctcggcgccc-ttgaagccgtagtcgaggctcgggt 132
Query: 1162 tg 1163
||
Sbjct: 131 tg 130
>gb|DR025087.1|DR025087 STRS1_69_B11.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_69_B11_A034 5', mRNA sequence
Length = 833
Score = 79.8 bits (40), Expect = 2e-013
Identities = 103/122 (84%), Gaps = 2/122 (1%)
Strand = Plus / Minus
Query: 1042 ttgtgctgctccgcgctctgcacgtgggttggtgatgggggtgcccangtactggagctc 1101
||||||||||| |||||||| |||||||| ||||| ||| || | | ||||||||||||
Sbjct: 381 ttgtgctgctcggcgctctggacgtgggt-ggtgacagggctggcgaggtactggagctc 323
Query: 1102 ngagcagtaggaggccatggcgatctcggtgccccttgaagccgtagtccaggctggggt 1161
|| |||||| |||||||| ||||||| |||| |||||||||||||| ||||| ||||
Sbjct: 322 cgatgtgtaggaagccatggctatctcggcgccc-ttgaagccgtagtcgaggctcgggt 264
Query: 1162 tg 1163
||
Sbjct: 263 tg 262
>gb|DR098589.1|DR098589 STRR1_46_C09.g1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_46_C09_A033 5', mRNA sequence
Length = 624
Score = 79.8 bits (40), Expect = 2e-013
Identities = 103/122 (84%), Gaps = 2/122 (1%)
Strand = Plus / Minus
Query: 1042 ttgtgctgctccgcgctctgcacgtgggttggtgatgggggtgcccangtactggagctc 1101
||||||||||| |||||||| |||||||| ||||| ||| || | | ||||||||||||
Sbjct: 335 ttgtgctgctcggcgctctggacgtgggt-ggtgacagggctggcgaggtactggagctc 277
Query: 1102 ngagcagtaggaggccatggcgatctcggtgccccttgaagccgtagtccaggctggggt 1161
|| |||||| |||||||| ||||||| |||| |||||||||||||| ||||| ||||
Sbjct: 276 cgatgtgtaggaagccatggctatctcggcgccc-ttgaagccgtagtcgaggctcgggt 218
Query: 1162 tg 1163
||
Sbjct: 217 tg 216
>gb|DR167864.1|DR167864 RTPHOS1_21_D05.g1_A029 Roots minus phosphorous Pinus taeda cDNA clone
RTPHOS1_21_D05_A029 5', mRNA sequence
Length = 606
Score = 79.8 bits (40), Expect = 2e-013
Identities = 103/122 (84%), Gaps = 2/122 (1%)
Strand = Plus / Minus
Query: 1042 ttgtgctgctccgcgctctgcacgtgggttggtgatgggggtgcccangtactggagctc 1101
||||||||||| |||||||| |||||||| ||||| ||| || | | ||||||||||||
Sbjct: 167 ttgtgctgctcggcgctctggacgtgggt-ggtgacagggctggcgaggtactggagctc 109
Query: 1102 ngagcagtaggaggccatggcgatctcggtgccccttgaagccgtagtccaggctggggt 1161
|| |||||| |||||||| ||||||| |||| |||||||||||||| ||||| ||||
Sbjct: 108 cgatgtgtaggaagccatggctatctcggcgccc-ttgaagccgtagtcgaggctcgggt 50
Query: 1162 tg 1163
||
Sbjct: 49 tg 48
>gb|CF670615.1|CF670615 RTCNT1_51_H09.b1_A029 Root control Pinus taeda cDNA clone
RTCNT1_51_H09_A029 3', mRNA sequence
Length = 705
Score = 71.9 bits (36), Expect = 6e-011
Identities = 102/122 (83%), Gaps = 2/122 (1%)
Strand = Plus / Plus
Query: 1042 ttgtgctgctccgcgctctgcacgtgggttggtgatgggggtgcccangtactggagctc 1101
||||||||||| |||||||| |||||||| ||||| ||| | | | ||||||||||||
Sbjct: 566 ttgtgctgctcggcgctctggacgtgggt-ggtgacagggctagcgaggtactggagctc 624
Query: 1102 ngagcagtaggaggccatggcgatctcggtgccccttgaagccgtagtccaggctggggt 1161
|| |||||| |||||||| ||||||| |||| |||||||||||||| ||||| ||||
Sbjct: 625 cgatgtgtaggaagccatggctatctcggcgccc-ttgaagccgtagtcgaggctcgggt 683
Query: 1162 tg 1163
||
Sbjct: 684 tg 685
>gb|DR079640.1|DR079640 RTFEPL1_12_C09.g1_A029 Roots plus added iron Pinus taeda cDNA clone
RTFEPL1_12_C09_A029 5', mRNA sequence
Length = 867
Score = 71.9 bits (36), Expect = 6e-011
Identities = 102/122 (83%), Gaps = 2/122 (1%)
Strand = Plus / Minus
Query: 1042 ttgtgctgctccgcgctctgcacgtgggttggtgatgggggtgcccangtactggagctc 1101
||||||||||| |||||||| |||||||| ||||| ||| | | | ||||||||||||
Sbjct: 181 ttgtgctgctcggcgctctggacgtgggt-ggtgacagggctagcgaggtactggagctc 123
Query: 1102 ngagcagtaggaggccatggcgatctcggtgccccttgaagccgtagtccaggctggggt 1161
|| |||||| |||||||| ||||||| |||| |||||||||||||| ||||| ||||
Sbjct: 122 cgatgtgtaggaagccatggctatctcggcgccc-ttgaagccgtagtcgaggctcgggt 64
Query: 1162 tg 1163
||
Sbjct: 63 tg 62
>gb|DR385646.1|DR385646 RTHG1_10_A05.b1_A029 Roots plus added mercury Pinus taeda cDNA clone
RTHG1_10_A05_A029 3', mRNA sequence
Length = 798
Score = 71.9 bits (36), Expect = 6e-011
Identities = 102/122 (83%), Gaps = 2/122 (1%)
Strand = Plus / Plus
Query: 1042 ttgtgctgctccgcgctctgcacgtgggttggtgatgggggtgcccangtactggagctc 1101
||||||||||| |||||||| |||||||| ||||| ||| | | | ||||||||||||
Sbjct: 121 ttgtgctgctcggcgctctggacgtgggt-ggtgacagggctagcgaggtactggagctc 179
Query: 1102 ngagcagtaggaggccatggcgatctcggtgccccttgaagccgtagtccaggctggggt 1161
|| |||||| |||||||| ||||||| |||| |||||||||||||| ||||| ||||
Sbjct: 180 cgatgtgtaggaagccatggctatctcggcgccc-ttgaagccgtagtcgaggctcgggt 238
Query: 1162 tg 1163
||
Sbjct: 239 tg 240
>gb|AY321088.1| Pinus pinaster phenylalanine ammonia-lyase (pal1) mRNA, complete cds
Length = 2570
Score = 63.9 bits (32), Expect = 1e-008
Identities = 101/122 (82%), Gaps = 2/122 (1%)
Strand = Plus / Minus
Query: 1042 ttgtgctgctccgcgctctgcacgtgggttggtgatgggggtgcccangtactggagctc 1101
||||||||||| |||||||| |||||||| ||||| ||| || | | |||| | |||||
Sbjct: 1641 ttgtgctgctcggcgctctggacgtgggt-ggtgacagggctggcgaggtacagaagctc 1583
Query: 1102 ngagcagtaggaggccatggcgatctcggtgccccttgaagccgtagtccaggctggggt 1161
|| |||||| |||||||| ||||||| |||| |||||||||||||| ||||| ||||
Sbjct: 1582 cgatgtgtaggaagccatggctatctcggcgccc-ttgaagccgtagtcgaggctcgggt 1524
Query: 1162 tg 1163
||
Sbjct: 1523 tg 1522
>gb|AY321089.1| Pinus pinaster phenylalanine ammonia-lyase (pal2) mRNA, complete cds
Length = 2561
Score = 63.9 bits (32), Expect = 1e-008
Identities = 101/122 (82%), Gaps = 2/122 (1%)
Strand = Plus / Minus
Query: 1042 ttgtgctgctccgcgctctgcacgtgggttggtgatgggggtgcccangtactggagctc 1101
||||||||||| |||||||| |||||||| ||||| ||| || | | |||| | |||||
Sbjct: 1582 ttgtgctgctcggcgctctggacgtgggt-ggtgacagggctggcgaggtacagaagctc 1524
Query: 1102 ngagcagtaggaggccatggcgatctcggtgccccttgaagccgtagtccaggctggggt 1161
|| |||||| |||||||| ||||||| |||| |||||||||||||| ||||| ||||
Sbjct: 1523 cgatgtgtaggaagccatggctatctcggcgccc-ttgaagccgtagtcgaggctcgggt 1465
Query: 1162 tg 1163
||
Sbjct: 1464 tg 1463
>gb|CF473922.1|CF473922 RTWW2_19_D07.g1_A021 Well-watered loblolly pine roots WW2 Pinus taeda
cDNA clone RTWW2_19_D07_A021 5', mRNA sequence
Length = 677
Score = 56.0 bits (28), Expect = 3e-006
Identities = 44/48 (91%), Gaps = 1/48 (2%)
Strand = Plus / Minus
Query: 1114 ggccatggcgatctcggtgccccttgaagccgtagtccaggctggggt 1161
||||||||||||||||| ||| ||||| |||||||||||||||||||
Sbjct: 78 ggccatggcgatctcggcaccc-ttgaaaccgtagtccaggctggggt 32
Score = 48.1 bits (24), Expect = 8e-004
Identities = 128/160 (80%), Gaps = 2/160 (1%)
Strand = Plus / Minus
Query: 908 ttctcctcgaggtggcgcaggtccacggcctggcacagcgccacgatgtaggtggacgac 967
||||| || ||||| || ||||| | ||||||||| |||||||||| ||| || || | |
Sbjct: 281 ttctcttccaggtgtcgtaggtcgatggcctggcagagcgccacgaggtacgtcgaagtc 222
Query: 968 atgagcttcaggatgtcgatcgcctcggcggtcttcctgggccgagacgaggcccaggga 1027
|||||||||| || |||| |||| ||| ||| | | |||| |||| ||||| |||||
Sbjct: 221 atgagcttcaaaatctcgacggcctgggccgtcatgc-gggcggagattaggccgaggga 163
Query: 1028 gttcacgtcctggtttgtgctgctccgcgctctgcacgtg 1067
||| ||||| ||| ||||| ||||| |||||||| |||||
Sbjct: 162 gttgacgtcttgg-ttgtgttgctcagcgctctggacgtg 124
>gb|DR024409.1|DR024409 STRS1_64_F07.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_64_F07_A034 5', mRNA sequence
Length = 578
Score = 56.0 bits (28), Expect = 3e-006
Identities = 44/48 (91%), Gaps = 1/48 (2%)
Strand = Plus / Minus
Query: 1114 ggccatggcgatctcggtgccccttgaagccgtagtccaggctggggt 1161
||||||||||||||||| ||| ||||| |||||||||||||||||||
Sbjct: 461 ggccatggcgatctcggcaccc-ttgaaaccgtagtccaggctggggt 415
>gb|AF013482.1|AF013482 Pinus banksiana phenylalanine ammonia-lyase (pal2) gene, partial cds
Length = 366
Score = 56.0 bits (28), Expect = 3e-006
Identities = 44/48 (91%), Gaps = 1/48 (2%)
Strand = Plus / Minus
Query: 1114 ggccatggcgatctcggtgccccttgaagccgtagtccaggctggggt 1161
||||||||||||||||| ||| ||||| |||||||||||||||||||
Sbjct: 321 ggccatggcgatctcggcaccc-ttgaaaccgtagtccaggctggggt 275
>gb|AF013485.1|AF013485 Pinus banksiana phenylalanine ammonia-lyase (pal5) gene, partial cds
Length = 366
Score = 56.0 bits (28), Expect = 3e-006
Identities = 44/48 (91%), Gaps = 1/48 (2%)
Strand = Plus / Minus
Query: 1114 ggccatggcgatctcggtgccccttgaagccgtagtccaggctggggt 1161
||||||||||||||||| ||| ||||| |||||||||||||||||||
Sbjct: 321 ggccatggcgatctcggcaccc-ttgaaaccgtagtccaggctggggt 275
>gb|AF013484.1|AF013484 Pinus banksiana phenylalanine ammonia-lyase (pal4) gene, partial cds
Length = 366
Score = 54.0 bits (27), Expect = 1e-005
Identities = 63/74 (85%), Gaps = 1/74 (1%)
Strand = Plus / Minus
Query: 1090 gtactggagctcngagcagtaggaggccatggcgatctcggtgccccttgaagccgtagt 1149
|||||||||||| || |||||| |||||||| ||||||| | |||||||| |||||||
Sbjct: 345 gtactggagctccgatgtgtaggaagccatggctatctcggcg-cccttgaaaccgtagt 287
Query: 1150 ccaggctggggttg 1163
| ||||| ||||||
Sbjct: 286 cgaggctcgggttg 273
>gb|BF777444.1|BF777444 NXSI_071_F09_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_071_F09 5' similar to Arabidopsis thaliana
sequence At3g53260 phenylalanine ammonia-lyase see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 428
Score = 52.0 bits (26), Expect = 5e-005
Identities = 59/70 (84%)
Strand = Plus / Minus
Query: 908 ttctcctcgaggtggcgcaggtccacggcctggcacagcgccacgatgtaggtggacgac 967
||||| || ||||| || ||||| | ||||||||| |||||||||| ||| || |||| |
Sbjct: 140 ttctcttccaggtgtcgtaggtcgatggcctggcagagcgccacgaggtacgtcgacgtc 81
Query: 968 atgagcttca 977
||||||||||
Sbjct: 80 atgagcttca 71
>gb|AI813128.1|AI813128 23C5 Pine Lambda Zap Xylem library Pinus taeda cDNA, mRNA sequence
Length = 524
Score = 48.1 bits (24), Expect = 8e-004
Identities = 128/160 (80%), Gaps = 2/160 (1%)
Strand = Plus / Minus
Query: 908 ttctcctcgaggtggcgcaggtccacggcctggcacagcgccacgatgtaggtggacgac 967
||||| || ||||| || ||||| | ||||||||| |||||||||| ||| || || | |
Sbjct: 221 ttctcttccaggtgtcgtaggtcgatggcctggcagagcgccacgaggtacgtcgaagtc 162
Query: 968 atgagcttcaggatgtcgatcgcctcggcggtcttcctgggccgagacgaggcccaggga 1027
|||||||||| || |||| |||| ||| ||| | | |||| |||| ||||| |||||
Sbjct: 161 atgagcttcaaaatctcgacggcctgggccgtcatgc-gggcggagattaggccgaggga 103
Query: 1028 gttcacgtcctggtttgtgctgctccgcgctctgcacgtg 1067
||| ||||| ||| ||||| ||||| |||||||| |||||
Sbjct: 102 gttgacgtcttgg-ttgtgttgctcagcgctctggacgtg 64
>gb|DR024117.1|DR024117 STRS1_62_B04.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_62_B04_A034 5', mRNA sequence
Length = 860
Score = 48.1 bits (24), Expect = 8e-004
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 1134 cccttgaagccgtagtccaggctggggt 1161
|||||||| |||||||||||||||||||
Sbjct: 324 cccttgaaaccgtagtccaggctggggt 297
Score = 44.1 bits (22), Expect = 0.013
Identities = 58/70 (82%)
Strand = Plus / Minus
Query: 908 ttctcctcgaggtggcgcaggtccacggcctggcacagcgccacgatgtaggtggacgac 967
||||| || ||||| || ||||| | ||||||||| |||||||||| ||| || || | |
Sbjct: 546 ttctcttccaggtgtcgtaggtcgatggcctggcagagcgccacgaggtacgtcgaagtc 487
Query: 968 atgagcttca 977
||||||||||
Sbjct: 486 atgagcttca 477
>gb|DR096094.1|DR096094 STRR1_25_E05.g1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_25_E05_A033 5', mRNA sequence
Length = 805
Score = 48.1 bits (24), Expect = 8e-004
Identities = 128/160 (80%), Gaps = 2/160 (1%)
Strand = Plus / Minus
Query: 908 ttctcctcgaggtggcgcaggtccacggcctggcacagcgccacgatgtaggtggacgac 967
||||| || ||||| || ||||| | ||||||||| |||||||||| ||| || || | |
Sbjct: 236 ttctcttccaggtgtcgtaggtcgatggcctggcagagcgccacgaggtacgtcgaagtc 177
Query: 968 atgagcttcaggatgtcgatcgcctcggcggtcttcctgggccgagacgaggcccaggga 1027
|||||||||| || |||| |||| ||| ||| | | |||| |||| ||||| |||||
Sbjct: 176 atgagcttcaaaatctcgacggcctgggccgtcatgc-gggcggagattaggccgaggga 118
Query: 1028 gttcacgtcctggtttgtgctgctccgcgctctgcacgtg 1067
||| ||||| ||| ||||| ||||| |||||||| |||||
Sbjct: 117 gttgacgtcttgg-ttgtgttgctcagcgctctggacgtg 79
>gb|DR018722.1|DR018722 STRS1_25_F11.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_25_F11_A034 3', mRNA sequence
Length = 759
Score = 44.1 bits (22), Expect = 0.013
Identities = 58/70 (82%)
Strand = Plus / Minus
Query: 908 ttctcctcgaggtggcgcaggtccacggcctggcacagcgccacgatgtaggtggacgac 967
||||| || ||||| || ||||| | ||||||||| |||||||||| ||| || || | |
Sbjct: 157 ttctcttccaggtgtcgtaggtcgatggcctggcagagcgccacgaggtacgtcgaagtc 98
Query: 968 atgagcttca 977
||||||||||
Sbjct: 97 atgagcttca 88
>gb|DR024061.1|DR024061 STRS1_62_B04.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_62_B04_A034 3', mRNA sequence
Length = 792
Score = 44.1 bits (22), Expect = 0.013
Identities = 58/70 (82%)
Strand = Plus / Minus
Query: 908 ttctcctcgaggtggcgcaggtccacggcctggcacagcgccacgatgtaggtggacgac 967
||||| || ||||| || ||||| | ||||||||| |||||||||| ||| || || | |
Sbjct: 191 ttctcttccaggtgtcgtaggtcgatggcctggcagagcgccacgaggtacgtcgaagtc 132
Query: 968 atgagcttca 977
||||||||||
Sbjct: 131 atgagcttca 122
>gb|AF013483.1|AF013483 Pinus banksiana phenylalanine ammonia-lyase (pal3) gene, partial cds
Length = 366
Score = 44.1 bits (22), Expect = 0.013
Identities = 66/80 (82%), Gaps = 1/80 (1%)
Strand = Plus / Minus
Query: 1073 gtgatgggggtgcccangtactggagctcngagcagtaggaggccatggcgatctcggtg 1132
|||| |||| || ||| |||||||||||| || ||| | ||||||||||||||||| |
Sbjct: 362 gtgacggggttggccaggtactggagctccgatgtgtaagcggccatggcgatctcggcg 303
Query: 1133 ccccttgaagccgtagtcca 1152
|||||||| || |||||||
Sbjct: 302 -cccttgaaaccatagtcca 284
>gb|CF401338.1|CF401338 RTWW1_11_A01.g1_A015 Well-watered loblolly pine roots WW1 Pinus taeda
cDNA clone RTWW1_11_A01_A015 5', mRNA sequence
Length = 571
Score = 42.1 bits (21), Expect = 0.052
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 1042 ttgtgctgctccgcgctctgcacgtgggt 1070
||||||||||| |||||||| ||||||||
Sbjct: 38 ttgtgctgctcggcgctctggacgtgggt 10
>gb|DR101633.1|DR101633 STRR1_74_E10.g1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_74_E10_A033 5', mRNA sequence
Length = 572
Score = 42.1 bits (21), Expect = 0.052
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 1042 ttgtgctgctccgcgctctgcacgtgggt 1070
||||||||||| |||||||| ||||||||
Sbjct: 76 ttgtgctgctcggcgctctggacgtgggt 48
>gb|DR101882.1|DR101882 STRR1_76_B02.g1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_76_B02_A033 5', mRNA sequence
Length = 749
Score = 42.1 bits (21), Expect = 0.052
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 1042 ttgtgctgctccgcgctctgcacgtgggt 1070
||||||||||| |||||||| ||||||||
Sbjct: 125 ttgtgctgctcggcgctctggacgtgggt 97
>gb|DR160726.1|DR160726 RTFE1_7_E06.g1_A029 Roots minus iron Pinus taeda cDNA clone
RTFE1_7_E06_A029 5', mRNA sequence
Length = 932
Score = 42.1 bits (21), Expect = 0.052
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 1042 ttgtgctgctccgcgctctgcacgtgggt 1070
||||||||||| |||||||| ||||||||
Sbjct: 40 ttgtgctgctcggcgctctggacgtgggt 12
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 111,784
Number of Sequences: 355925
Number of extensions: 111784
Number of successful extensions: 31605
Number of sequences better than 0.5: 30
Number of HSP's better than 0.5 without gapping: 29
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 31520
Number of HSP's gapped (non-prelim): 58
length of query: 1197
length of database: 217,277,237
effective HSP length: 19
effective length of query: 1178
effective length of database: 210,514,662
effective search space: 247986271836
effective search space used: 247986271836
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)