BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 1805022.2.2
(1462 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CF663545.1|CF663545 RTCNT1_3_C03.g1_A029 Root control Pi... 131 9e-029
gb|CO170284.1|CO170284 NDL1_13_A07.b1_A029 Needles control ... 131 9e-029
gb|DR012570.1|DR012570 HEAT1_13_E05.g1_A029 Root at 37 C fo... 131 9e-029
gb|DR684764.1|DR684764 EST1074841 Normalized pine embryo li... 123 2e-026
gb|DT632301.1|DT632301 EST1147232 Normalized pine embryo li... 123 2e-026
gb|CO167298.1|CO167298 FLD1_68_C08.b1_A029 Root flooded Pin... 121 9e-026
gb|DR385000.1|DR385000 RTHG1_6_B04.b1_A029 Roots plus added... 121 9e-026
gb|DR385676.1|DR385676 RTHG1_10_D07.b1_A029 Roots plus adde... 121 9e-026
gb|DR385753.1|DR385753 RTHG1_10_D07.g1_A029 Roots plus adde... 121 9e-026
gb|DR386705.1|DR386705 RTHG1_17_A06.b1_A029 Roots plus adde... 121 9e-026
gb|DR745849.1|DR745849 RTCU1_33_B06.b1_A029 Roots plus adde... 121 9e-026
gb|DR167749.1|DR167749 RTPHOS1_20_F10.g1_A029 Roots minus p... 107 1e-021
gb|CO167375.1|CO167375 FLD1_68_C08.g1_A029 Root flooded Pin... 101 8e-020
gb|DR102334.1|DR102334 STRR1_80_H05.b1_A033 Stem Response R... 100 3e-019
gb|DR069213.1|DR069213 RTDK1_5_D09.g1_A029 Roots, dark Pinu... 88 1e-015
gb|DR021932.1|DR021932 STRS1_47_G01.g1_A034 Shoot tip pitch... 86 5e-015
gb|DR069137.1|DR069137 RTDK1_5_D09.b1_A029 Roots, dark Pinu... 86 5e-015
gb|BQ697317.1|BQ697317 NXPV_055_F05_F NXPV (Nsf Xylem Plani... 74 2e-011
gb|DR102410.1|DR102410 STRR1_80_H05.g1_A033 Stem Response R... 72 7e-011
gb|DR692338.1|DR692338 EST1082426 Normalized pine embryo li... 72 7e-011
gb|DT634175.1|DT634175 EST1149106 Normalized pine embryo li... 72 7e-011
gb|CO158311.1|CO158311 FLD1_6_C12.b1_A029 Root flooded Pinu... 66 4e-009
gb|DR687598.1|DR687598 EST1077680 Normalized pine embryo li... 64 2e-008
gb|DT632670.1|DT632670 EST1147601 Normalized pine embryo li... 52 7e-005
>gb|CF663545.1|CF663545 RTCNT1_3_C03.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_3_C03_A029 5', mRNA sequence
Length = 654
Score = 131 bits (66), Expect = 9e-029
Identities = 189/230 (82%)
Strand = Plus / Plus
Query: 14 gacatgtgtgattatgctgtggggctaagtcgccaactaaatggatccattataccatct 73
||||||||||||||||| || || ||||||| || | ||||| ||||| ||||| ||
Sbjct: 181 gacatgtgtgattatgcggttggcttaagtcgacagttgaatggctccatcataccttca 240
Query: 74 gaacgaccaaaccatatgatgatggaggtgtggaatccccttggagttgtgggtgttata 133
||||| || || ||||||||||||||||| |||||||| ||||| | || || || ||
Sbjct: 241 gaacggcccaatcatatgatgatggaggtttggaatcctcttggtatagtcggagtaatt 300
Query: 134 acggcatttaatttcccttgtgctgtgcttggttggaatgcttgcattgctttggtctgt 193
|| ||||| || || || |||||||| ||||| |||||||| ||||| |||||||| |||
Sbjct: 301 actgcattcaactttccatgtgctgtacttgggtggaatgcatgcatcgctttggtttgt 360
Query: 194 ggaaattgtgtcgtctggaaaggtgctccaacaactccactgatcactat 243
|| |||||||| || |||||||||||||| || || ||| ||||||||||
Sbjct: 361 ggcaattgtgttgtttggaaaggtgctcctactacaccattgatcactat 410
Score = 48.1 bits (24), Expect = 0.001
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 447 aacttagcggaaacaatgccatcattgttatggatgatgc 486
||||||| |||||||||||||| || |||||||| |||||
Sbjct: 615 aacttagtggaaacaatgccattatagttatggaagatgc 654
>gb|CO170284.1|CO170284 NDL1_13_A07.b1_A029 Needles control Pinus taeda cDNA clone
NDL1_13_A07_A029 3', mRNA sequence
Length = 767
Score = 131 bits (66), Expect = 9e-029
Identities = 189/230 (82%)
Strand = Plus / Minus
Query: 14 gacatgtgtgattatgctgtggggctaagtcgccaactaaatggatccattataccatct 73
||||||||||||||||| || || ||||||| || | ||||| ||||| ||||| ||
Sbjct: 641 gacatgtgtgattatgcggttggcttaagtcgacagttgaatggctccatcataccttca 582
Query: 74 gaacgaccaaaccatatgatgatggaggtgtggaatccccttggagttgtgggtgttata 133
||||| || || ||||||||||||||||| |||||||| ||||| | || || || ||
Sbjct: 581 gaacggcccaatcatatgatgatggaggtttggaatcctcttggtatagtcggagtaatt 522
Query: 134 acggcatttaatttcccttgtgctgtgcttggttggaatgcttgcattgctttggtctgt 193
|| ||||| || || || |||||||| ||||| |||||||| ||||| |||||||| |||
Sbjct: 521 actgcattcaactttccatgtgctgtacttgggtggaatgcatgcatcgctttggtttgt 462
Query: 194 ggaaattgtgtcgtctggaaaggtgctccaacaactccactgatcactat 243
|| |||||||| || |||||||||||||| || || ||| ||||||||||
Sbjct: 461 ggcaattgtgttgtttggaaaggtgctcctactacaccattgatcactat 412
Score = 67.9 bits (34), Expect = 1e-009
Identities = 91/110 (82%)
Strand = Plus / Minus
Query: 443 cttgaacttagcggaaacaatgccatcattgttatggatgatgcagatatccagctagct 502
||||||||||| |||||||||||||| || |||||||| |||||||| | | | |
Sbjct: 211 cttgaacttagtggaaacaatgccattatagttatggaagatgcagacttagcaatggtt 152
Query: 503 gtgcgatctgtcttgttcgctgctgttggtacagcaggacaacgctgcac 552
||||||||||| ||||| ||||| |||||||| || |||||||| |||||
Sbjct: 151 gtgcgatctgttttgtttgctgcagttggtactgctggacaacgatgcac 102
>gb|DR012570.1|DR012570 HEAT1_13_E05.g1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_13_E05_A029 5', mRNA sequence
Length = 627
Score = 131 bits (66), Expect = 9e-029
Identities = 189/230 (82%)
Strand = Plus / Plus
Query: 14 gacatgtgtgattatgctgtggggctaagtcgccaactaaatggatccattataccatct 73
||||||||||||||||| || || ||||||| || | ||||| ||||| ||||| ||
Sbjct: 240 gacatgtgtgattatgcggttggcttaagtcgacagttgaatggctccatcataccttca 299
Query: 74 gaacgaccaaaccatatgatgatggaggtgtggaatccccttggagttgtgggtgttata 133
||||| || || ||||||||||||||||| |||||||| ||||| | || || || ||
Sbjct: 300 gaacggcccaatcatatgatgatggaggtttggaatcctcttggtatagtcggagtaatt 359
Query: 134 acggcatttaatttcccttgtgctgtgcttggttggaatgcttgcattgctttggtctgt 193
|| ||||| || || || |||||||| ||||| |||||||| ||||| |||||||| |||
Sbjct: 360 actgcattcaactttccatgtgctgtacttgggtggaatgcatgcatcgctttggtttgt 419
Query: 194 ggaaattgtgtcgtctggaaaggtgctccaacaactccactgatcactat 243
|| |||||||| || |||||||||||||| || || ||| ||||||||||
Sbjct: 420 ggcaattgtgttgtttggaaaggtgctcctactacaccattgatcactat 469
>gb|DR684764.1|DR684764 EST1074841 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAAW40 3' end, mRNA sequence
Length = 823
Score = 123 bits (62), Expect = 2e-026
Identities = 188/230 (81%)
Strand = Plus / Plus
Query: 14 gacatgtgtgattatgctgtggggctaagtcgccaactaaatggatccattataccatct 73
|||||||| |||||||| || || ||||||| || | ||||| ||||| ||||| ||
Sbjct: 41 gacatgtgcgattatgcggttggcttaagtcgacagttgaatggctccatcataccttca 100
Query: 74 gaacgaccaaaccatatgatgatggaggtgtggaatccccttggagttgtgggtgttata 133
||||| || || ||||||||||||||||| |||||||| ||||| | || || || ||
Sbjct: 101 gaacggcccaatcatatgatgatggaggtttggaatcctcttggtatagtcggagtaatt 160
Query: 134 acggcatttaatttcccttgtgctgtgcttggttggaatgcttgcattgctttggtctgt 193
|| ||||| || || || |||||||| ||||| |||||||| ||||| |||||||| |||
Sbjct: 161 actgcattcaactttccatgtgctgtacttgggtggaatgcatgcatcgctttggtttgt 220
Query: 194 ggaaattgtgtcgtctggaaaggtgctccaacaactccactgatcactat 243
|| |||||||| || |||||||||||||| || || ||| ||||||||||
Sbjct: 221 ggcaattgtgttgtttggaaaggtgctcctactacaccattgatcactat 270
Score = 71.9 bits (36), Expect = 7e-011
Identities = 108/132 (81%)
Strand = Plus / Plus
Query: 421 tgcaagatttggtaaatgccttcttgaacttagcggaaacaatgccatcattgttatgga 480
|||||||||||| || || | ||||||||||| |||||||||||||| || ||||||||
Sbjct: 448 tgcaagatttgggaagtgtttgcttgaacttagtggaaacaatgccattatagttatgga 507
Query: 481 tgatgcagatatccagctagctgtgcgatctgtcttgttcgctgctgttggtacagcagg 540
|||||||| | | | |||||||||||| ||||| ||||| |||||||| || ||
Sbjct: 508 agatgcagacttagcaatggttgtgcgatctgttttgtttgctgcagttggtactgctgg 567
Query: 541 acaacgctgcac 552
|||||| |||||
Sbjct: 568 acaacgatgcac 579
>gb|DT632301.1|DT632301 EST1147232 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMFI57 3' end, mRNA sequence
Length = 841
Score = 123 bits (62), Expect = 2e-026
Identities = 188/230 (81%)
Strand = Plus / Plus
Query: 14 gacatgtgtgattatgctgtggggctaagtcgccaactaaatggatccattataccatct 73
|||||||| |||||||| || || ||||||| || | ||||| ||||| ||||| ||
Sbjct: 49 gacatgtgcgattatgcggttggcttaagtcgacagttgaatggctccatcataccttca 108
Query: 74 gaacgaccaaaccatatgatgatggaggtgtggaatccccttggagttgtgggtgttata 133
||||| || || ||||||||||||||||| |||||||| ||||| | || || || ||
Sbjct: 109 gaacggcccaatcatatgatgatggaggtttggaatcctcttggtatagtcggagtaatt 168
Query: 134 acggcatttaatttcccttgtgctgtgcttggttggaatgcttgcattgctttggtctgt 193
|| ||||| || || || |||||||| ||||| |||||||| ||||| |||||||| |||
Sbjct: 169 actgcattcaactttccatgtgctgtacttgggtggaatgcatgcatcgctttggtttgt 228
Query: 194 ggaaattgtgtcgtctggaaaggtgctccaacaactccactgatcactat 243
|| |||||||| || |||||||||||||| || || ||| ||||||||||
Sbjct: 229 ggcaattgtgttgtttggaaaggtgctcctactacaccattgatcactat 278
Score = 71.9 bits (36), Expect = 7e-011
Identities = 108/132 (81%)
Strand = Plus / Plus
Query: 421 tgcaagatttggtaaatgccttcttgaacttagcggaaacaatgccatcattgttatgga 480
|||||||||||| || || | ||||||||||| |||||||||||||| || ||||||||
Sbjct: 456 tgcaagatttgggaagtgtttgcttgaacttagtggaaacaatgccattatagttatgga 515
Query: 481 tgatgcagatatccagctagctgtgcgatctgtcttgttcgctgctgttggtacagcagg 540
|||||||| | | | |||||||||||| ||||| ||||| |||||||| || ||
Sbjct: 516 agatgcagacttagcaatggttgtgcgatctgttttgtttgctgcagttggtactgctgg 575
Query: 541 acaacgctgcac 552
|||||| |||||
Sbjct: 576 acaacgatgcac 587
Score = 44.1 bits (22), Expect = 0.016
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 773 gaaggaaactttgtgcaaccaacaattgtggaaa 806
||||| || ||||||||||| |||||||||||||
Sbjct: 808 gaagggaattttgtgcaacctacaattgtggaaa 841
>gb|CO167298.1|CO167298 FLD1_68_C08.b1_A029 Root flooded Pinus taeda cDNA clone
FLD1_68_C08_A029 3', mRNA sequence
Length = 832
Score = 121 bits (61), Expect = 9e-026
Identities = 316/401 (78%)
Strand = Plus / Plus
Query: 773 gaaggaaactttgtgcaaccaacaattgtggaaattacaccttctgcaccagttgtgaaa 832
||||| || ||||||||||| |||||||||||||| | |||||| ||||||||
Sbjct: 13 gaagggaattttgtgcaacctacaattgtggaaatatctaaagatgcacctgttgtgaag 72
Query: 833 gaagaactctttggtcctgtcctttatgttatgaaatttcagaccttgaaggaagcaatt 892
||||| || ||||| ||||| || ||||| |||| |||||||||||| ||||||| |||
Sbjct: 73 gaagagctttttgggcctgttctctatgtcttgaagtttcagaccttggaggaagctatt 132
Query: 893 gaaatcaataactctgttcctcaaggattgagcagttctatatttacaaagaggccagat 952
||||| || || |||||| ||||||| | || ||||| || || || ||| |||||
Sbjct: 133 gaaataaacaattctgttgctcaaggcctaagtagttccatcttcactcggagtccagaa 192
Query: 953 attatttttaagtggctcgggccccatggtagtgattgtggtatagtgaatgtgaacata 1012
||||||||||||| | || || ||||||||| |||||||| || || | || |||
Sbjct: 193 gctatttttaagtggattggaccttgtggtagtgactgtggtattgtaaacataaatata 252
Query: 1013 cctactaatggtgctgaaattggtggagcatttggtggagaaaaagcaactggtggtgga 1072
|| |||| ||| || || ||||| || ||||||||||| ||||| ||||| ||||| ||
Sbjct: 253 ccaactagtggggcagagattgggggtgcatttggtggtgaaaaggcaaccggtggaggt 312
Query: 1073 cgagaagcagggagtgattcctggaagcagtacatgaggagggcgacttgtacaatcaac 1132
|| |||||||| |||||||| ||||| ||||||||| | | || ||||||||| ||||
Sbjct: 313 cgtgaagcaggaagtgattcatggaaacagtacatgcgtcgtgcaacttgtacactcaat 372
Query: 1133 tatgggagcgagctacctctagcccagggaatcaattttgg 1173
|| |||||||| || || ||||| || || || ||||||||
Sbjct: 373 tacgggagcgaactgccactagcacaagggattaattttgg 413
>gb|DR385000.1|DR385000 RTHG1_6_B04.b1_A029 Roots plus added mercury Pinus taeda cDNA clone
RTHG1_6_B04_A029 3', mRNA sequence
Length = 797
Score = 121 bits (61), Expect = 9e-026
Identities = 316/401 (78%)
Strand = Plus / Plus
Query: 773 gaaggaaactttgtgcaaccaacaattgtggaaattacaccttctgcaccagttgtgaaa 832
||||| || ||||||||||| |||||||||||||| | |||||| ||||||||
Sbjct: 13 gaagggaattttgtgcaacctacaattgtggaaatatctaaagatgcacctgttgtgaag 72
Query: 833 gaagaactctttggtcctgtcctttatgttatgaaatttcagaccttgaaggaagcaatt 892
||||| || ||||| ||||| || ||||| |||| |||||||||||| ||||||| |||
Sbjct: 73 gaagagctttttgggcctgttctctatgtcttgaagtttcagaccttggaggaagctatt 132
Query: 893 gaaatcaataactctgttcctcaaggattgagcagttctatatttacaaagaggccagat 952
||||| || || |||||| ||||||| | || ||||| || || || ||| |||||
Sbjct: 133 gaaataaacaattctgttgctcaaggcctaagtagttccatcttcactcggagtccagaa 192
Query: 953 attatttttaagtggctcgggccccatggtagtgattgtggtatagtgaatgtgaacata 1012
||||||||||||| | || || ||||||||| |||||||| || || | || |||
Sbjct: 193 gctatttttaagtggattggaccttgtggtagtgactgtggtattgtaaacataaatata 252
Query: 1013 cctactaatggtgctgaaattggtggagcatttggtggagaaaaagcaactggtggtgga 1072
|| |||| ||| || || ||||| || ||||||||||| ||||| ||||| ||||| ||
Sbjct: 253 ccaactagtggggcagagattgggggtgcatttggtggtgaaaaggcaaccggtggaggt 312
Query: 1073 cgagaagcagggagtgattcctggaagcagtacatgaggagggcgacttgtacaatcaac 1132
|| |||||||| |||||||| ||||| ||||||||| | | || ||||||||| ||||
Sbjct: 313 cgtgaagcaggaagtgattcatggaaacagtacatgcgtcgtgcaacttgtacactcaat 372
Query: 1133 tatgggagcgagctacctctagcccagggaatcaattttgg 1173
|| |||||||| || || ||||| || || || ||||||||
Sbjct: 373 tacgggagcgaactgccactagcacaagggattaattttgg 413
>gb|DR385676.1|DR385676 RTHG1_10_D07.b1_A029 Roots plus added mercury Pinus taeda cDNA clone
RTHG1_10_D07_A029 3', mRNA sequence
Length = 793
Score = 121 bits (61), Expect = 9e-026
Identities = 283/357 (79%)
Strand = Plus / Plus
Query: 817 tgcaccagttgtgaaagaagaactctttggtcctgtcctttatgttatgaaatttcagac 876
|||||| |||||||| ||||| || ||||| ||||| || ||||| |||| ||||||||
Sbjct: 6 tgcacctgttgtgaaggaagagctttttgggcctgttctctatgtcttgaagtttcagac 65
Query: 877 cttgaaggaagcaattgaaatcaataactctgttcctcaaggattgagcagttctatatt 936
|||| ||||||| |||||||| || || |||||| ||||||| | || ||||| || ||
Sbjct: 66 cttggaggaagctattgaaataaacaattctgttgctcaaggcctaagtagttccatctt 125
Query: 937 tacaaagaggccagatattatttttaagtggctcgggccccatggtagtgattgtggtat 996
|| ||| ||||| ||||||||||||| | || || ||||||||| ||||||||
Sbjct: 126 cactcggagtccagaagctatttttaagtggattggaccttgtggtagtgactgtggtat 185
Query: 997 agtgaatgtgaacatacctactaatggtgctgaaattggtggagcatttggtggagaaaa 1056
|| || | || ||||| |||| ||| || || ||||| || ||||||||||| |||||
Sbjct: 186 tgtaaacataaatataccaactagtggggcagagattgggggtgcatttggtggtgaaaa 245
Query: 1057 agcaactggtggtggacgagaagcagggagtgattcctggaagcagtacatgaggagggc 1116
||||| ||||| || || |||||||| |||||||| ||||| ||||||||| | | ||
Sbjct: 246 ggcaaccggtggaggtcgtgaagcaggaagtgattcatggaaacagtacatgcgtcgtgc 305
Query: 1117 gacttgtacaatcaactatgggagcgagctacctctagcccagggaatcaattttgg 1173
||||||||| |||| || |||||||| || || ||||| || || || ||||||||
Sbjct: 306 aacttgtacactcaattacgggagcgaactgccactagcacaagggattaattttgg 362
>gb|DR385753.1|DR385753 RTHG1_10_D07.g1_A029 Roots plus added mercury Pinus taeda cDNA clone
RTHG1_10_D07_A029 5', mRNA sequence
Length = 821
Score = 121 bits (61), Expect = 9e-026
Identities = 316/401 (78%)
Strand = Plus / Plus
Query: 773 gaaggaaactttgtgcaaccaacaattgtggaaattacaccttctgcaccagttgtgaaa 832
||||| || ||||||||||| |||||||||||||| | |||||| ||||||||
Sbjct: 115 gaagggaattttgtgcaacctacaattgtggaaatatctaaagatgcacctgttgtgaag 174
Query: 833 gaagaactctttggtcctgtcctttatgttatgaaatttcagaccttgaaggaagcaatt 892
||||| || ||||| ||||| || ||||| |||| |||||||||||| ||||||| |||
Sbjct: 175 gaagagctttttgggcctgttctctatgtcttgaagtttcagaccttggaggaagctatt 234
Query: 893 gaaatcaataactctgttcctcaaggattgagcagttctatatttacaaagaggccagat 952
||||| || || |||||| ||||||| | || ||||| || || || ||| |||||
Sbjct: 235 gaaataaacaattctgttgctcaaggcctaagtagttccatcttcactcggagtccagaa 294
Query: 953 attatttttaagtggctcgggccccatggtagtgattgtggtatagtgaatgtgaacata 1012
||||||||||||| | || || ||||||||| |||||||| || || | || |||
Sbjct: 295 gctatttttaagtggattggaccttgtggtagtgactgtggtattgtaaacataaatata 354
Query: 1013 cctactaatggtgctgaaattggtggagcatttggtggagaaaaagcaactggtggtgga 1072
|| |||| ||| || || ||||| || ||||||||||| ||||| ||||| ||||| ||
Sbjct: 355 ccaactagtggggcagagattgggggtgcatttggtggtgaaaaggcaaccggtggaggt 414
Query: 1073 cgagaagcagggagtgattcctggaagcagtacatgaggagggcgacttgtacaatcaac 1132
|| |||||||| |||||||| ||||| ||||||||| | | || ||||||||| ||||
Sbjct: 415 cgtgaagcaggaagtgattcatggaaacagtacatgcgtcgtgcaacttgtacactcaat 474
Query: 1133 tatgggagcgagctacctctagcccagggaatcaattttgg 1173
|| |||||||| || || ||||| || || || ||||||||
Sbjct: 475 tacgggagcgaactgccactagcacaagggattaattttgg 515
>gb|DR386705.1|DR386705 RTHG1_17_A06.b1_A029 Roots plus added mercury Pinus taeda cDNA clone
RTHG1_17_A06_A029 3', mRNA sequence
Length = 823
Score = 121 bits (61), Expect = 9e-026
Identities = 316/401 (78%)
Strand = Plus / Plus
Query: 773 gaaggaaactttgtgcaaccaacaattgtggaaattacaccttctgcaccagttgtgaaa 832
||||| || ||||||||||| |||||||||||||| | |||||| ||||||||
Sbjct: 38 gaagggaattttgtgcaacctacaattgtggaaatatctaaagatgcacctgttgtgaag 97
Query: 833 gaagaactctttggtcctgtcctttatgttatgaaatttcagaccttgaaggaagcaatt 892
||||| || ||||| ||||| || ||||| |||| |||||||||||| ||||||| |||
Sbjct: 98 gaagagctttttgggcctgttctctatgtcttgaagtttcagaccttggaggaagctatt 157
Query: 893 gaaatcaataactctgttcctcaaggattgagcagttctatatttacaaagaggccagat 952
||||| || || |||||| ||||||| | || ||||| || || || ||| |||||
Sbjct: 158 gaaataaacaattctgttgctcaaggcctaagtagttccatcttcactcggagtccagaa 217
Query: 953 attatttttaagtggctcgggccccatggtagtgattgtggtatagtgaatgtgaacata 1012
||||||||||||| | || || ||||||||| |||||||| || || | || |||
Sbjct: 218 gctatttttaagtggattggaccttgtggtagtgactgtggtattgtaaacataaatata 277
Query: 1013 cctactaatggtgctgaaattggtggagcatttggtggagaaaaagcaactggtggtgga 1072
|| |||| ||| || || ||||| || ||||||||||| ||||| ||||| ||||| ||
Sbjct: 278 ccaactagtggggcagagattgggggtgcatttggtggtgaaaaggcaaccggtggaggt 337
Query: 1073 cgagaagcagggagtgattcctggaagcagtacatgaggagggcgacttgtacaatcaac 1132
|| |||||||| |||||||| ||||| ||||||||| | | || ||||||||| ||||
Sbjct: 338 cgtgaagcaggaagtgattcatggaaacagtacatgcgtcgtgcaacttgtacactcaat 397
Query: 1133 tatgggagcgagctacctctagcccagggaatcaattttgg 1173
|| |||||||| || || ||||| || || || ||||||||
Sbjct: 398 tacgggagcgaactgccactagcacaagggattaattttgg 438
>gb|DR745849.1|DR745849 RTCU1_33_B06.b1_A029 Roots plus added copper Pinus taeda cDNA clone
RTCU1_33_B06_A029 3', mRNA sequence
Length = 622
Score = 121 bits (61), Expect = 9e-026
Identities = 316/401 (78%)
Strand = Plus / Minus
Query: 773 gaaggaaactttgtgcaaccaacaattgtggaaattacaccttctgcaccagttgtgaaa 832
||||| || ||||||||||| |||||||||||||| | |||||| ||||||||
Sbjct: 603 gaagggaattttgtgcaacctacaattgtggaaatatctaaagatgcacctgttgtgaag 544
Query: 833 gaagaactctttggtcctgtcctttatgttatgaaatttcagaccttgaaggaagcaatt 892
||||| || ||||| ||||| || ||||| |||| |||||||||||| ||||||| |||
Sbjct: 543 gaagagctttttgggcctgttctctatgtcttgaagtttcagaccttggaggaagctatt 484
Query: 893 gaaatcaataactctgttcctcaaggattgagcagttctatatttacaaagaggccagat 952
||||| || || |||||| ||||||| | || ||||| || || || ||| |||||
Sbjct: 483 gaaataaacaattctgttgctcaaggcctaagtagttccatcttcactcggagtccagaa 424
Query: 953 attatttttaagtggctcgggccccatggtagtgattgtggtatagtgaatgtgaacata 1012
||||||||||||| | || || ||||||||| |||||||| || || | || |||
Sbjct: 423 gctatttttaagtggattggaccttgtggtagtgactgtggtattgtaaacataaatata 364
Query: 1013 cctactaatggtgctgaaattggtggagcatttggtggagaaaaagcaactggtggtgga 1072
|| |||| ||| || || ||||| || ||||||||||| ||||| ||||| ||||| ||
Sbjct: 363 ccaactagtggggcagagattgggggtgcatttggtggtgaaaaggcaaccggtggaggt 304
Query: 1073 cgagaagcagggagtgattcctggaagcagtacatgaggagggcgacttgtacaatcaac 1132
|| |||||||| |||||||| ||||| ||||||||| | | || ||||||||| ||||
Sbjct: 303 cgtgaagcaggaagtgattcatggaaacagtacatgcgtcgtgcaacttgtacactcaat 244
Query: 1133 tatgggagcgagctacctctagcccagggaatcaattttgg 1173
|| |||||||| || || ||||| || || || ||||||||
Sbjct: 243 tacgggagcgaactgccactagcacaagggattaattttgg 203
>gb|DR167749.1|DR167749 RTPHOS1_20_F10.g1_A029 Roots minus phosphorous Pinus taeda cDNA
clone RTPHOS1_20_F10_A029 5', mRNA sequence
Length = 614
Score = 107 bits (54), Expect = 1e-021
Identities = 132/158 (83%)
Strand = Plus / Plus
Query: 86 catatgatgatggaggtgtggaatccccttggagttgtgggtgttataacggcatttaat 145
||||||||||||||||| |||||||| ||||| | || || || || || ||||| ||
Sbjct: 34 catatgatgatggaggtttggaatcctcttggtatagtcggagtaattactgcattcaac 93
Query: 146 ttcccttgtgctgtgcttggttggaatgcttgcattgctttggtctgtggaaattgtgtc 205
|| || |||||||| ||||| |||||||| ||||| |||||||| ||||| ||||||||
Sbjct: 94 tttccatgtgctgtacttgggtggaatgcatgcatcgctttggtttgtggcaattgtgtt 153
Query: 206 gtctggaaaggtgctccaacaactccactgatcactat 243
|| |||||||||||||| || || ||| ||||||||||
Sbjct: 154 gtttggaaaggtgctcctactacaccattgatcactat 191
Score = 71.9 bits (36), Expect = 7e-011
Identities = 108/132 (81%)
Strand = Plus / Plus
Query: 421 tgcaagatttggtaaatgccttcttgaacttagcggaaacaatgccatcattgttatgga 480
|||||||||||| || || | ||||||||||| |||||||||||||| || ||||||||
Sbjct: 369 tgcaagatttgggaagtgtttgcttgaacttagtggaaacaatgccattatagttatgga 428
Query: 481 tgatgcagatatccagctagctgtgcgatctgtcttgttcgctgctgttggtacagcagg 540
|||||||| | | | |||||||||||| ||||| ||||| |||||||| || ||
Sbjct: 429 agatgcagacttagcaatggttgtgcgatctgttttgtttgctgcagttggtactgctgg 488
Query: 541 acaacgctgcac 552
|||||| |||||
Sbjct: 489 acaacgatgcac 500
>gb|CO167375.1|CO167375 FLD1_68_C08.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_68_C08_A029 5', mRNA sequence
Length = 889
Score = 101 bits (51), Expect = 8e-020
Identities = 156/191 (81%)
Strand = Plus / Plus
Query: 53 aatggatccattataccatctgaacgaccaaaccatatgatgatggaggtgtggaatccc 112
||||| ||||| ||||| || ||||| || | ||||||||||||||||| ||||||||
Sbjct: 14 aatggctccatcataccttcagaacggccttatcatatgatgatggaggtttggaatcct 73
Query: 113 cttggagttgtgggtgttataacggcatttaatttcccttgtgctgtgcttggttggaat 172
||||| | | || || || || ||||| || || || |||||||| ||||| ||||||
Sbjct: 74 cttggtatattcggagtaattactgcattcaactttccatgtgctgtacttgggtggaat 133
Query: 173 gcttgcattgctttggtctgtggaaattgtgtcgtctggaaaggtgctccaacaactcca 232
|| ||||| |||||||| ||||| |||||||| || |||||||||||||| || || |||
Sbjct: 134 gcatgcatcgctttggtttgtggcaattgtgttgtttggaaaggtgctcctactacacca 193
Query: 233 ctgatcactat 243
||||||||||
Sbjct: 194 ttgatcactat 204
Score = 71.9 bits (36), Expect = 7e-011
Identities = 108/132 (81%)
Strand = Plus / Plus
Query: 421 tgcaagatttggtaaatgccttcttgaacttagcggaaacaatgccatcattgttatgga 480
|||||||||||| || || | ||||||||||| |||||||||||||| || ||||||||
Sbjct: 382 tgcaagatttgggaagtgtttgcttgaacttagtggaaacaatgccattatagttatgga 441
Query: 481 tgatgcagatatccagctagctgtgcgatctgtcttgttcgctgctgttggtacagcagg 540
|||||||| | | | |||||||||||| ||||| ||||| |||||||| || ||
Sbjct: 442 agatgcagacttagcaatggttgtgcgatctgttttgtttgctgcagttggtactgctgg 501
Query: 541 acaacgctgcac 552
|||||| |||||
Sbjct: 502 acaacgatgcac 513
Score = 65.9 bits (33), Expect = 4e-009
Identities = 102/125 (81%)
Strand = Plus / Plus
Query: 773 gaaggaaactttgtgcaaccaacaattgtggaaattacaccttctgcaccagttgtgaaa 832
||||| || ||||||||||| |||||||||||||| | |||||| ||||||||
Sbjct: 734 gaagggaattttgtgcaacctacaattgtggaaatatctaaagatgcacctgttgtgaag 793
Query: 833 gaagaactctttggtcctgtcctttatgttatgaaatttcagaccttgaaggaagcaatt 892
||||| || ||||| ||||| || ||||| |||| |||||||||||| ||||||| |||
Sbjct: 794 gaagagctttttgggcctgttctctatgtcttgaagtttcagaccttggaggaagctatt 853
Query: 893 gaaat 897
|||||
Sbjct: 854 gaaat 858
>gb|DR102334.1|DR102334 STRR1_80_H05.b1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_80_H05_A033 3', mRNA sequence
Length = 728
Score = 99.6 bits (50), Expect = 3e-019
Identities = 245/310 (79%)
Strand = Plus / Plus
Query: 864 tgaaatttcagaccttgaaggaagcaattgaaatcaataactctgttcctcaaggattga 923
|||| |||||||||||| ||||||| |||||||| || || |||||| ||||||| | |
Sbjct: 1 tgaagtttcagaccttggaggaagctattgaaataaacaattctgttgctcaaggcctaa 60
Query: 924 gcagttctatatttacaaagaggccagatattatttttaagtggctcgggccccatggta 983
| ||||| || || || ||| ||||| ||||||||||||| | || || |||||
Sbjct: 61 gtagttccatcttcactcggagtccagaagctatttttaagtggattggaccttgtggta 120
Query: 984 gtgattgtggtatagtgaatgtgaacatacctactaatggtgctgaaattggtggagcat 1043
|||| |||||||| || || | || ||||| |||| ||| || || ||||| || ||||
Sbjct: 121 gtgactgtggtattgtaaacataaatataccaactagtggggcagagattgggggtgcat 180
Query: 1044 ttggtggagaaaaagcaactggtggtggacgagaagcagggagtgattcctggaagcagt 1103
||||||| ||||| ||||| ||||| || || |||||||| |||||||| ||||| ||||
Sbjct: 181 ttggtggtgaaaaggcaaccggtggaggtcgtgaagcaggaagtgattcatggaaacagt 240
Query: 1104 acatgaggagggcgacttgtacaatcaactatgggagcgagctacctctagcccagggaa 1163
||||| | | || ||||||||| |||| || |||||||| || || ||||| || || |
Sbjct: 241 acatgcgtcgtgcaacttgtacactcaattacgggagcgaactgccactagcacaaggga 300
Query: 1164 tcaattttgg 1173
| ||||||||
Sbjct: 301 ttaattttgg 310
>gb|DR069213.1|DR069213 RTDK1_5_D09.g1_A029 Roots, dark Pinus taeda cDNA clone
RTDK1_5_D09_A029 5', mRNA sequence
Length = 665
Score = 87.7 bits (44), Expect = 1e-015
Identities = 176/220 (80%)
Strand = Plus / Plus
Query: 954 ttatttttaagtggctcgggccccatggtagtgattgtggtatagtgaatgtgaacatac 1013
|||||||||||||| | || || ||||||||| |||||||| || || | || ||||
Sbjct: 37 ttatttttaagtggattggaccttgtggtagtgactgtggtattgtaaacataaatatac 96
Query: 1014 ctactaatggtgctgaaattggtggagcatttggtggagaaaaagcaactggtggtggac 1073
| |||| ||| || || ||||| || ||||||||||| ||||| ||||| ||||| || |
Sbjct: 97 caactagtggggcagagattgggggtgcatttggtggtgaaaaggcaaccggtggaggtc 156
Query: 1074 gagaagcagggagtgattcctggaagcagtacatgaggagggcgacttgtacaatcaact 1133
| |||||||| |||||||| ||||| ||||||||| | | || ||||||||| |||| |
Sbjct: 157 gtgaagcaggaagtgattcatggaaacagtacatgcgtcgtgcaacttgtacactcaatt 216
Query: 1134 atgggagcgagctacctctagcccagggaatcaattttgg 1173
| |||||||| || || ||||| || || || ||||||||
Sbjct: 217 acgggagcgaactgccactagcacaagggattaattttgg 256
>gb|DR021932.1|DR021932 STRS1_47_G01.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_47_G01_A034 5', mRNA sequence
Length = 703
Score = 85.7 bits (43), Expect = 5e-015
Identities = 175/219 (79%)
Strand = Plus / Minus
Query: 955 tatttttaagtggctcgggccccatggtagtgattgtggtatagtgaatgtgaacatacc 1014
||||||||||||| | || || ||||||||| |||||||| || || | || |||||
Sbjct: 687 tatttttaagtggattggaccttgtggtagtgactgtggtattgtaaacataaatatacc 628
Query: 1015 tactaatggtgctgaaattggtggagcatttggtggagaaaaagcaactggtggtggacg 1074
|||| ||| || || ||||| || ||||||||||| ||||| ||||| ||||| || ||
Sbjct: 627 aactagtggggcagagattgggggtgcatttggtggtgaaaaggcaaccggtggaggtcg 568
Query: 1075 agaagcagggagtgattcctggaagcagtacatgaggagggcgacttgtacaatcaacta 1134
|||||||| |||||||| ||||| ||||||||| | | || ||||||||| |||| ||
Sbjct: 567 tgaagcaggaagtgattcatggaaacagtacatgcgtcgtgcaacttgtacactcaatta 508
Query: 1135 tgggagcgagctacctctagcccagggaatcaattttgg 1173
|||||||| || || ||||| || || || ||||||||
Sbjct: 507 cgggagcgaactgccactagcacaagggattaattttgg 469
>gb|DR069137.1|DR069137 RTDK1_5_D09.b1_A029 Roots, dark Pinus taeda cDNA clone
RTDK1_5_D09_A029 3', mRNA sequence
Length = 666
Score = 85.7 bits (43), Expect = 5e-015
Identities = 175/219 (79%)
Strand = Plus / Plus
Query: 955 tatttttaagtggctcgggccccatggtagtgattgtggtatagtgaatgtgaacatacc 1014
||||||||||||| | || || ||||||||| |||||||| || || | || |||||
Sbjct: 60 tatttttaagtggattggaccttgtggtagtgactgtggtattgtaaacataaatatacc 119
Query: 1015 tactaatggtgctgaaattggtggagcatttggtggagaaaaagcaactggtggtggacg 1074
|||| ||| || || ||||| || ||||||||||| ||||| ||||| ||||| || ||
Sbjct: 120 aactagtggggcagagattgggggtgcatttggtggtgaaaaggcaaccggtggaggtcg 179
Query: 1075 agaagcagggagtgattcctggaagcagtacatgaggagggcgacttgtacaatcaacta 1134
|||||||| |||||||| ||||| ||||||||| | | || ||||||||| |||| ||
Sbjct: 180 tgaagcaggaagtgattcatggaaacagtacatgcgtcgtgcaacttgtacactcaatta 239
Query: 1135 tgggagcgagctacctctagcccagggaatcaattttgg 1173
|||||||| || || ||||| || || || ||||||||
Sbjct: 240 cgggagcgaactgccactagcacaagggattaattttgg 278
>gb|BQ697317.1|BQ697317 NXPV_055_F05_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_055_F05 5' similar to Arabidopsis
thaliana sequence At1g54100 putative protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA sequence
Length = 436
Score = 73.8 bits (37), Expect = 2e-011
Identities = 94/113 (83%)
Strand = Plus / Plus
Query: 1031 attggtggagcatttggtggagaaaaagcaactggtggtggacgagaagcagggagtgat 1090
||||| || ||||||||||| ||||| ||||| ||||| || || |||||||| ||||||
Sbjct: 5 attgggggtgcatttggtggtgaaaaggcaaccggtggaggtcgtgaagcaggaagtgat 64
Query: 1091 tcctggaagcagtacatgaggagggcgacttgtacaatcaactatgggagcga 1143
|| ||||| ||||||||| | | || ||||||||| |||| || ||||||||
Sbjct: 65 tcatggaaacagtacatgcgtcgtgcaacttgtacactcaattacgggagcga 117
>gb|DR102410.1|DR102410 STRR1_80_H05.g1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_80_H05_A033 5', mRNA sequence
Length = 604
Score = 71.9 bits (36), Expect = 7e-011
Identities = 117/144 (81%)
Strand = Plus / Plus
Query: 773 gaaggaaactttgtgcaaccaacaattgtggaaattacaccttctgcaccagttgtgaaa 832
||||| || ||||||||||| |||||||||||||| | |||||| ||||||||
Sbjct: 461 gaagggaattttgtgcaacctacaattgtggaaatatctaaagatgcacctgttgtgaag 520
Query: 833 gaagaactctttggtcctgtcctttatgttatgaaatttcagaccttgaaggaagcaatt 892
||||| || ||||| ||||| || ||||| |||| |||||||||||| ||||||| |||
Sbjct: 521 gaagagctttttgggcctgttctctatgtcttgaagtttcagaccttggaggaagctatt 580
Query: 893 gaaatcaataactctgttcctcaa 916
||||| || || |||||| |||||
Sbjct: 581 gaaataaacaattctgttgctcaa 604
Score = 71.9 bits (36), Expect = 7e-011
Identities = 108/132 (81%)
Strand = Plus / Plus
Query: 421 tgcaagatttggtaaatgccttcttgaacttagcggaaacaatgccatcattgttatgga 480
|||||||||||| || || | ||||||||||| |||||||||||||| || ||||||||
Sbjct: 109 tgcaagatttgggaagtgtttgcttgaacttagtggaaacaatgccattatagttatgga 168
Query: 481 tgatgcagatatccagctagctgtgcgatctgtcttgttcgctgctgttggtacagcagg 540
|||||||| | | | |||||||||||| ||||| ||||| |||||||| || ||
Sbjct: 169 agatgcagacttagcaatggttgtgcgatctgttttgtttgctgcagttggtactgctgg 228
Query: 541 acaacgctgcac 552
|||||| |||||
Sbjct: 229 acaacgatgcac 240
Score = 40.1 bits (20), Expect = 0.25
Identities = 56/68 (82%)
Strand = Plus / Plus
Query: 668 ggaccactgcacactcctgcttcaaaagagaactttttgaaaggcattcagactatcaaa 727
||||||||||| |||| ||| ||||| ||||||| ||| |||||||| |||| |||
Sbjct: 356 ggaccactgcatactcgtgcatcaaagctgaactttgagaagggcattcaagctataaaa 415
Query: 728 tctcaggg 735
||||||||
Sbjct: 416 tctcaggg 423
>gb|DR692338.1|DR692338 EST1082426 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWADL04 3' end, mRNA sequence
Length = 831
Score = 71.9 bits (36), Expect = 7e-011
Identities = 87/104 (83%)
Strand = Plus / Plus
Query: 14 gacatgtgtgattatgctgtggggctaagtcgccaactaaatggatccattataccatct 73
||||||||||||||||| || || ||||||| || | ||||| ||||| ||||| ||
Sbjct: 704 gacatgtgtgattatgcggttggcttaagtcgacagttgaatggctccatcataccttca 763
Query: 74 gaacgaccaaaccatatgatgatggaggtgtggaatccccttgg 117
||||| || || ||||||||||||||||| |||||||| |||||
Sbjct: 764 gaacggcccaatcatatgatgatggaggtttggaatcctcttgg 807
>gb|DT634175.1|DT634175 EST1149106 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMG312 3' end, mRNA sequence
Length = 912
Score = 71.9 bits (36), Expect = 7e-011
Identities = 87/104 (83%)
Strand = Plus / Plus
Query: 14 gacatgtgtgattatgctgtggggctaagtcgccaactaaatggatccattataccatct 73
||||||||||||||||| || || ||||||| || | ||||| ||||| ||||| ||
Sbjct: 567 gacatgtgtgattatgcggttggcttaagtcgacagttgaatggctccatcataccttca 626
Query: 74 gaacgaccaaaccatatgatgatggaggtgtggaatccccttgg 117
||||| || || ||||||||||||||||| |||||||| |||||
Sbjct: 627 gaacggcccaatcatatgatgatggaggtttggaatcctcttgg 670
>gb|CO158311.1|CO158311 FLD1_6_C12.b1_A029 Root flooded Pinus taeda cDNA clone
FLD1_6_C12_A029 3', mRNA sequence
Length = 717
Score = 65.9 bits (33), Expect = 4e-009
Identities = 51/57 (89%)
Strand = Plus / Plus
Query: 1021 tggtgctgaaattggtggagcatttggtggagaaaaagcaactggtggtggacgaga 1077
|||||||||||||||||| || ||||||||||| |||| ||| ||||||||| ||||
Sbjct: 530 tggtgctgaaattggtggtgcttttggtggagagaaagaaacaggtggtggaagaga 586
>gb|DR687598.1|DR687598 EST1077680 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWABU36 3' end, mRNA sequence
Length = 733
Score = 63.9 bits (32), Expect = 2e-008
Identities = 87/104 (83%), Gaps = 1/104 (0%)
Strand = Plus / Plus
Query: 14 gacatgtgtgattatgctgtggggctaagtcgccaactaaatggatccattataccatct 73
||||||||||||||||| || || ||||||| || | ||||| ||||| ||||| ||
Sbjct: 559 gacatgtgtgattatgcggttggcttaagtcgacagttgaatggctccatcataccttca 618
Query: 74 gaacgaccaaaccatatgatgatggaggtgtggaatccccttgg 117
||||| || || ||||||||||||||||| |||||||| |||||
Sbjct: 619 gaacggcccaatcatatgatgatggaggt-tggaatcctcttgg 661
>gb|DT632670.1|DT632670 EST1147601 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMFM52 3' end, mRNA sequence
Length = 791
Score = 52.0 bits (26), Expect = 7e-005
Identities = 71/86 (82%)
Strand = Plus / Plus
Query: 14 gacatgtgtgattatgctgtggggctaagtcgccaactaaatggatccattataccatct 73
||||||||||||||||| || || ||||||| || | ||||| ||||| ||||| ||
Sbjct: 706 gacatgtgtgattatgcggttggcttaagtcgacagttgaatggctccatcataccttca 765
Query: 74 gaacgaccaaaccatatgatgatgga 99
||||| || || ||||||||||||||
Sbjct: 766 gaacggcccaatcatatgatgatgga 791
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 189,586
Number of Sequences: 355925
Number of extensions: 189586
Number of successful extensions: 54779
Number of sequences better than 0.5: 24
Number of HSP's better than 0.5 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 54701
Number of HSP's gapped (non-prelim): 71
length of query: 1462
length of database: 217,277,237
effective HSP length: 19
effective length of query: 1443
effective length of database: 210,514,662
effective search space: 303772657266
effective search space used: 303772657266
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)