BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 1804944.2.3
(671 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AY262821.1| Pinus radiata cellulose synthase (CesA2) mRN... 72 3e-011
gb|BQ698421.1|BQ698421 NXPV_069_F11_F NXPV (Nsf Xylem Plani... 70 1e-010
gb|DR684943.1|DR684943 EST1075020 Normalized pine embryo li... 70 1e-010
gb|DR687054.1|DR687054 EST1077132 Normalized pine embryo li... 70 1e-010
gb|DR692054.1|DR692054 EST1082141 Normalized pine embryo li... 70 1e-010
gb|DT632612.1|DT632612 EST1147543 Normalized pine embryo li... 70 1e-010
gb|DT633819.1|DT633819 EST1148750 Normalized pine embryo li... 70 1e-010
gb|AL749837.1|AL749837 AL749837 AS Pinus pinaster cDNA clon... 64 8e-009
gb|CD023932.1|CD023932 NXRV_018_G08_F NXRV (Nsf Xylem Root ... 64 8e-009
gb|CF478733.1|CF478733 RTWW3_16_G10.g1_A022 Well-watered lo... 64 8e-009
gb|CV031645.1|CV031645 RTNACL1_2_G07.g1_A029 Roots plus add... 64 8e-009
gb|DR096307.1|DR096307 STRR1_27_D08.b1_A033 Stem Response R... 64 8e-009
gb|DR096386.1|DR096386 STRR1_27_D08.g1_A033 Stem Response R... 64 8e-009
gb|BV079716.1| Pp_CesA4 Pinus pinaster megagametophytes Pin... 64 8e-009
gb|AW698152.1|AW698152 NXNV_073_G04_F Nsf Xylem Normal wood... 62 3e-008
gb|BE762150.1|BE762150 NXCI_082_D03_F NXCI (Nsf Xylem Compr... 62 3e-008
gb|CD027901.1|CD027901 NXNV_073_G04 Nsf Xylem Normal wood V... 62 3e-008
gb|DR118030.1|DR118030 RTMG1_10_E11.g1_A029 Roots minus mag... 62 3e-008
gb|DR163320.1|DR163320 RTFE1_42_F04.b1_A029 Roots minus iro... 62 3e-008
gb|AW064806.1|AW064806 ST36A06 Pine TriplEx shoot tip libra... 58 5e-007
gb|BX249614.1|BX249614 BX249614 Pinus pinaster differenciat... 56 2e-006
gb|BX254022.1|BX254022 BX254022 Pinus pinaster differenciat... 56 2e-006
gb|BX254483.1|BX254483 BX254483 Pinus pinaster differenciat... 56 2e-006
gb|BX254948.1|BX254948 BX254948 Pinus pinaster differenciat... 56 2e-006
gb|BX255349.1|BX255349 BX255349 Pinus pinaster differenciat... 56 2e-006
gb|BF609149.1|BF609149 NXSI_040_H08_F NXSI (Nsf Xylem Side ... 56 2e-006
gb|BF609565.1|BF609565 NXSI_046_C11_F NXSI (Nsf Xylem Side ... 56 2e-006
gb|BF777661.1|BF777661 NXSI_073_C10_F NXSI (Nsf Xylem Side ... 56 2e-006
gb|BG040499.1|BG040499 NXSI_108_H05_F NXSI (Nsf Xylem Side ... 56 2e-006
gb|BG275218.1|BG275218 NXSI_138_C06_F NXSI (Nsf Xylem Side ... 56 2e-006
gb|CF666027.1|CF666027 RTCNT1_20_E07.b1_A029 Root control P... 56 2e-006
gb|CF672816.1|CF672816 RTCNT1_74_D05.b1_A029 Root control P... 56 2e-006
gb|CO168623.1|CO168623 NDL1_1_A02.g1_A029 Needles control P... 56 2e-006
gb|DR682518.1|DR682518 EST1072593 Normalized pine embryo li... 56 2e-006
gb|AH014319.1|SEG_AY764731S Pinus taeda isolate 27 cellulos... 56 2e-006
gb|AY764732.1|AY764731S2 Pinus taeda isolate 27 cellulose s... 56 2e-006
gb|AY789650.1| Pinus taeda cellulose synthase catalytic sub... 56 2e-006
gb|AY262815.1| Pinus radiata cellulose synthase (CesA3) mRN... 56 2e-006
gb|AY262820.1| Pinus radiata cellulose synthase (CesA10) mR... 56 2e-006
gb|BF610213.1|BF610213 NXSI_056_B10_F NXSI (Nsf Xylem Side ... 54 8e-006
gb|BX784298.1|BX784298 BX784298 Pinus pinaster differenciat... 54 8e-006
gb|AW697996.1|AW697996 NXNV_079_C07_F Nsf Xylem Normal wood... 48 5e-004
gb|BG039685.1|BG039685 NXSI_102_H08_F NXSI (Nsf Xylem Side ... 48 5e-004
gb|BQ695648.1|BQ695648 NXPV_030_H04_F NXPV (Nsf Xylem Plani... 48 5e-004
gb|BQ697774.1|BQ697774 NXPV_052_F10_F NXPV (Nsf Xylem Plani... 48 5e-004
gb|BQ703105.1|BQ703105 NXSI_136_D09_F NXSI (Nsf Xylem Side ... 48 5e-004
gb|DR060720.1|DR060720 RTNIT1_29_C08.g1_A029 Roots minus ni... 48 5e-004
dbj|BD236020.1| Materials and method for modification of pl... 48 5e-004
gb|AY639654.1| Pinus radiata cellulose synthase catalytic s... 48 5e-004
gb|AH014290.1|SEG_AY764673S Pinus taeda isolate 11 cellulos... 48 5e-004
gb|AY764674.1|AY764673S2 Pinus taeda isolate 11 cellulose s... 48 5e-004
gb|AH014291.1|SEG_AY764675S Pinus taeda isolate 16 cellulos... 48 5e-004
gb|AY764676.1|AY764675S2 Pinus taeda isolate 16 cellulose s... 48 5e-004
gb|AH014292.1|SEG_AY764677S Pinus taeda isolate 25 cellulos... 48 5e-004
gb|AY764678.1|AY764677S2 Pinus taeda isolate 25 cellulose s... 48 5e-004
gb|AH014293.1|SEG_AY764679S Pinus taeda isolate 7 cellulose... 48 5e-004
gb|AY764680.1|AY764679S2 Pinus taeda isolate 7 cellulose sy... 48 5e-004
gb|AH014294.1|SEG_AY764681S Pinus taeda isolate 6 cellulose... 48 5e-004
gb|AY764682.1|AY764681S2 Pinus taeda isolate 6 cellulose sy... 48 5e-004
gb|AH014295.1|SEG_AY764683S Pinus taeda isolate 4 cellulose... 48 5e-004
gb|AY764684.1|AY764683S2 Pinus taeda isolate 4 cellulose sy... 48 5e-004
gb|AH014296.1|SEG_AY764685S Pinus taeda isolate 26 cellulos... 48 5e-004
gb|AY764686.1|AY764685S2 Pinus taeda isolate 26 cellulose s... 48 5e-004
gb|AH014297.1|SEG_AY764687S Pinus taeda isolate 9 cellulose... 48 5e-004
gb|AY764688.1|AY764687S2 Pinus taeda isolate 9 cellulose sy... 48 5e-004
gb|AH014298.1|SEG_AY764689S Pinus taeda isolate 23 cellulos... 48 5e-004
gb|AY764690.1|AY764689S2 Pinus taeda isolate 23 cellulose s... 48 5e-004
gb|AH014299.1|SEG_AY764691S Pinus taeda isolate 13 cellulos... 48 5e-004
gb|AY764692.1|AY764691S2 Pinus taeda isolate 13 cellulose s... 48 5e-004
gb|AH014300.1|SEG_AY764693S Pinus taeda isolate 30 cellulos... 48 5e-004
gb|AY764694.1|AY764693S2 Pinus taeda isolate 30 cellulose s... 48 5e-004
gb|AH014301.1|SEG_AY764695S Pinus taeda isolate 22 cellulos... 48 5e-004
gb|AY764696.1|AY764695S2 Pinus taeda isolate 22 cellulose s... 48 5e-004
gb|AH014302.1|SEG_AY764697S Pinus taeda isolate 32 cellulos... 48 5e-004
gb|AY764698.1|AY764697S2 Pinus taeda isolate 32 cellulose s... 48 5e-004
gb|AH014303.1|SEG_AY764699S Pinus taeda isolate 18 cellulos... 48 5e-004
gb|AY764700.1|AY764699S2 Pinus taeda isolate 18 cellulose s... 48 5e-004
gb|AH014304.1|SEG_AY764701S Pinus taeda isolate 10 cellulos... 48 5e-004
gb|AY764702.1|AY764701S2 Pinus taeda isolate 10 cellulose s... 48 5e-004
gb|AH014305.1|SEG_AY764703S Pinus taeda isolate 14 cellulos... 48 5e-004
gb|AY764704.1|AY764703S2 Pinus taeda isolate 14 cellulose s... 48 5e-004
gb|AH014306.1|SEG_AY764705S Pinus taeda isolate 21 cellulos... 48 5e-004
gb|AY764706.1|AY764705S2 Pinus taeda isolate 21 cellulose s... 48 5e-004
gb|AH014307.1|SEG_AY764707S Pinus taeda isolate 31 cellulos... 48 5e-004
gb|AY764708.1|AY764707S2 Pinus taeda isolate 31 cellulose s... 48 5e-004
gb|AH014308.1|SEG_AY764709S Pinus taeda isolate 5 cellulose... 48 5e-004
gb|AY764710.1|AY764709S2 Pinus taeda isolate 5 cellulose sy... 48 5e-004
gb|AH014309.1|SEG_AY764711S Pinus taeda isolate 2 cellulose... 48 5e-004
gb|AY764712.1|AY764711S2 Pinus taeda isolate 2 cellulose sy... 48 5e-004
gb|AH014310.1|SEG_AY764713S Pinus taeda isolate 3 cellulose... 48 5e-004
gb|AY764714.1|AY764713S2 Pinus taeda isolate 3 cellulose sy... 48 5e-004
gb|AH014311.1|SEG_AY764715S Pinus taeda isolate 19 cellulos... 48 5e-004
gb|AY764716.1|AY764715S2 Pinus taeda isolate 19 cellulose s... 48 5e-004
gb|AH014312.1|SEG_AY764717S Pinus taeda isolate 28 cellulos... 48 5e-004
gb|AY764718.1|AY764717S2 Pinus taeda isolate 28 cellulose s... 48 5e-004
gb|AH014313.1|SEG_AY764719S Pinus taeda isolate 17 cellulos... 48 5e-004
gb|AY764720.1|AY764719S2 Pinus taeda isolate 17 cellulose s... 48 5e-004
gb|AH014314.1|SEG_AY764721S Pinus taeda isolate 8 cellulose... 48 5e-004
gb|AY764722.1|AY764721S2 Pinus taeda isolate 8 cellulose sy... 48 5e-004
gb|AH014315.1|SEG_AY764723S Pinus taeda isolate 15 cellulos... 48 5e-004
gb|AY764724.1|AY764723S2 Pinus taeda isolate 15 cellulose s... 48 5e-004
gb|AH014316.1|SEG_AY764725S Pinus taeda isolate 1 cellulose... 48 5e-004
gb|AY764726.1|AY764725S2 Pinus taeda isolate 1 cellulose sy... 48 5e-004
gb|AH014317.1|SEG_AY764727S Pinus taeda isolate 29 cellulos... 48 5e-004
gb|AY764728.1|AY764727S2 Pinus taeda isolate 29 cellulose s... 48 5e-004
gb|AH014318.1|SEG_AY764729S Pinus taeda isolate 20 cellulos... 48 5e-004
gb|AY764730.1|AY764729S2 Pinus taeda isolate 20 cellulose s... 48 5e-004
gb|AH014320.1|SEG_AY764733S Pinus taeda isolate 12 cellulos... 48 5e-004
gb|AY764734.1|AY764733S2 Pinus taeda isolate 12 cellulose s... 48 5e-004
gb|AH014321.1|SEG_AY764735S Pinus taeda isolate 24 cellulos... 48 5e-004
gb|AY764736.1|AY764735S2 Pinus taeda isolate 24 cellulose s... 48 5e-004
gb|AY789652.1| Pinus taeda cellulose synthase catalytic sub... 48 5e-004
gb|BE209216.1|BE209216 NXNV_147_D10_F Nsf Xylem Normal wood... 46 0.002
gb|BQ654688.1|BQ654688 NXRV084_D02_F NXRV (Nsf Xylem Root w... 46 0.002
gb|BX679126.1|BX679126 BX679126 RS Pinus pinaster cDNA clon... 46 0.002
gb|BF610612.1|BF610612 NXSI_060_G02_F NXSI (Nsf Xylem Side ... 44 0.007
gb|CF478399.1|CF478399 RTWW3_18_G11.g1_A022 Well-watered lo... 44 0.007
gb|BG040950.1|BG040950 NXSI_117_A06_F NXSI (Nsf Xylem Side ... 42 0.029
gb|BX251307.1|BX251307 BX251307 Pinus pinaster differenciat... 40 0.11
gb|BX252761.1|BX252761 BX252761 Pinus pinaster differenciat... 40 0.11
gb|BX254358.1|BX254358 BX254358 Pinus pinaster differenciat... 40 0.11
gb|BE209203.1|BE209203 NXNV_147_C08_F Nsf Xylem Normal wood... 40 0.11
gb|BF186257.1|BF186257 NXCI_135_B10_F NXCI (Nsf Xylem Compr... 40 0.11
gb|BG832808.1|BG832808 NXPV_080_C10_F NXPV (Nsf Xylem Plani... 40 0.11
gb|BM493879.1|BM493879 NXLV_071_A06_F NXLV (Nsf Xylem Late ... 40 0.11
gb|CF476470.1|CF476470 RTWW3_1_C10.g1_A022 Well-watered lob... 40 0.11
gb|CF668221.1|CF668221 RTCNT1_35_D11.b1_A029 Root control P... 40 0.11
gb|BX682482.1|BX682482 BX682482 Pinus pinaster differenciat... 40 0.11
gb|BX682490.1|BX682490 BX682490 Pinus pinaster differenciat... 40 0.11
gb|CO369260.1|CO369260 RTK1_46_B01.b1_A029 Roots minus pota... 40 0.11
gb|CO369885.1|CO369885 RTK1_55_A04.b1_A029 Roots minus pota... 40 0.11
gb|CX647876.1|CX647876 COLD1_25_C03.b1_A029 Root cold Pinus... 40 0.11
gb|CX651410.1|CX651410 COLD1_52_E07.b1_A029 Root cold Pinus... 40 0.11
gb|DR017425.1|DR017425 STRS1_16_E10.b1_A034 Shoot tip pitch... 40 0.11
gb|DR017506.1|DR017506 STRS1_16_E10.g1_A034 Shoot tip pitch... 40 0.11
gb|DR089385.1|DR089385 RTAL1_8_G12.b1_A029 Roots plus added... 40 0.11
gb|DR110657.1|DR110657 RTS1_12_E03.b1_A029 Roots minus sulf... 40 0.11
gb|DR110744.1|DR110744 RTS1_12_E03.g1_A029 Roots minus sulf... 40 0.11
gb|DR689610.1|DR689610 EST1079696 Normalized pine embryo li... 40 0.11
gb|DR744391.1|DR744391 RTCU1_22_E01.b1_A029 Roots plus adde... 40 0.11
gb|DR746030.1|DR746030 RTCU1_34_F01.b1_A029 Roots plus adde... 40 0.11
gb|DT635390.1|DT635390 EST1150321 Normalized pine embryo li... 40 0.11
gb|AY789651.1| Pinus taeda cellulose synthase catalytic sub... 40 0.11
gb|AY262814.1| Pinus radiata cellulose synthase (CesA11) mR... 40 0.11
gb|AY262816.1| Pinus radiata cellulose synthase (CesA5) mRN... 40 0.11
gb|AY262817.1| Pinus radiata cellulose synthase (CesA6) mRN... 40 0.11
gb|AY262818.1| Pinus radiata cellulose synthase (CesA7) mRN... 40 0.11
gb|AY262819.1| Pinus radiata cellulose synthase (CesA8) mRN... 40 0.11
gb|BF778814.1|BF778814 NXSI_087_D09_F NXSI (Nsf Xylem Side ... 38 0.45
gb|BQ702475.1|BQ702475 NXSI_129_A10_F NXSI (Nsf Xylem Side ... 38 0.45
gb|CF669767.1|CF669767 RTCNT1_46_A03.b1_A029 Root control P... 38 0.45
gb|CF669847.1|CF669847 RTCNT1_46_A03.g1_A029 Root control P... 38 0.45
gb|CO198739.1|CO198739 GEO1_16_D05.b1_A029 Root gravitropis... 38 0.45
gb|CO198795.1|CO198795 GEO1_16_D05.g1_A029 Root gravitropis... 38 0.45
gb|CO199139.1|CO199139 GEO1_19_D04.b1_A029 Root gravitropis... 38 0.45
gb|DR060949.1|DR060949 RTNIT1_31_C04.b1_A029 Roots minus ni... 38 0.45
gb|DR061017.1|DR061017 RTNIT1_31_C04.g1_A029 Roots minus ni... 38 0.45
gb|DR081399.1|DR081399 RTFEPL1_29_G12.b1_A029 Roots plus ad... 38 0.45
gb|DR081470.1|DR081470 RTFEPL1_29_G12.g1_A029 Roots plus ad... 38 0.45
gb|DR110307.1|DR110307 RTS1_10_D06.b1_A029 Roots minus sulf... 38 0.45
gb|DR110395.1|DR110395 RTS1_10_D06.g1_A029 Roots minus sulf... 38 0.45
gb|DR163446.1|DR163446 RTFE1_43_A10.b1_A029 Roots minus iro... 38 0.45
gb|DR164326.1|DR164326 RTFE1_48_F06.b1_A029 Roots minus iro... 38 0.45
gb|DR164411.1|DR164411 RTFE1_48_F06.g1_A029 Roots minus iro... 38 0.45
gb|DR388300.1|DR388300 RTHG1_27_H09.b1_A029 Roots plus adde... 38 0.45
gb|DR388381.1|DR388381 RTHG1_27_H09.g1_A029 Roots plus adde... 38 0.45
>gb|AY262821.1| Pinus radiata cellulose synthase (CesA2) mRNA, partial cds
Length = 3603
Score = 71.9 bits (36), Expect = 3e-011
Identities = 69/80 (86%)
Strand = Plus / Plus
Query: 10 tttgcattttgggtgattgtccatctgtatcccttcctcaaaggtttggttgggaggcaa 69
||||| |||||||||||||||||||| || || ||||| ||||||||| | || | |||
Sbjct: 3007 tttgcgttttgggtgattgtccatctttaccctttcctgaaaggtttgatgggacgacaa 3066
Query: 70 aacaggacaccgacaattgt 89
||||||||||| ||||||||
Sbjct: 3067 aacaggacacccacaattgt 3086
>gb|BQ698421.1|BQ698421 NXPV_069_F11_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_069_F11 5' similar to Arabidopsis
thaliana sequence At5g05170 cellulose synthase catalytic
subunit (Ath-B) see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 497
Score = 69.9 bits (35), Expect = 1e-010
Identities = 110/135 (81%)
Strand = Plus / Plus
Query: 10 tttgcattttgggtgattgtccatctgtatcccttcctcaaaggtttggttgggaggcaa 69
||||| || ||||||||||| ||| ||||||| ||||| ||||||||| | || |||||
Sbjct: 126 tttgccttctgggtgattgtgcatttgtatcctttcctaaaaggtttgatgggaaggcag 185
Query: 70 aacaggacaccgacaattgtcatcgtctggtccatcctgctggcttcaatcttctcactc 129
||| ||||||| |||||||| || || ||||| || || || || || || || || |||
Sbjct: 186 aaccggacacccacaattgttattgtgtggtctattctactcgcatccattttttctctc 245
Query: 130 ctttgggttcggatt 144
|| ||||||||||||
Sbjct: 246 ctatgggttcggatt 260
>gb|DR684943.1|DR684943 EST1075020 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAAY38 3' end, mRNA sequence
Length = 859
Score = 69.9 bits (35), Expect = 1e-010
Identities = 110/135 (81%)
Strand = Plus / Plus
Query: 10 tttgcattttgggtgattgtccatctgtatcccttcctcaaaggtttggttgggaggcaa 69
||||| || ||||||||||| ||| ||||||| ||||| ||||||||| | || |||||
Sbjct: 424 tttgccttctgggtgattgtgcatttgtatcctttcctaaaaggtttgatgggaaggcag 483
Query: 70 aacaggacaccgacaattgtcatcgtctggtccatcctgctggcttcaatcttctcactc 129
||| ||||||| |||||||| || || ||||| || || || || || || || || |||
Sbjct: 484 aaccggacacccacaattgttattgtgtggtctattctactcgcatccattttttctctc 543
Query: 130 ctttgggttcggatt 144
|| ||||||||||||
Sbjct: 544 ctatgggttcggatt 558
>gb|DR687054.1|DR687054 EST1077132 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWABM78 3' end, mRNA sequence
Length = 740
Score = 69.9 bits (35), Expect = 1e-010
Identities = 110/135 (81%)
Strand = Plus / Plus
Query: 10 tttgcattttgggtgattgtccatctgtatcccttcctcaaaggtttggttgggaggcaa 69
||||| || ||||||||||| ||| ||||||| ||||| ||||||||| | || |||||
Sbjct: 519 tttgccttctgggtgattgtgcatttgtatcctttcctaaaaggtttgatgggaaggcag 578
Query: 70 aacaggacaccgacaattgtcatcgtctggtccatcctgctggcttcaatcttctcactc 129
||| ||||||| |||||||| || || ||||| || || || || || || || || |||
Sbjct: 579 aaccggacacccacaattgttattgtgtggtctattctactcgcatccattttttctctc 638
Query: 130 ctttgggttcggatt 144
|| ||||||||||||
Sbjct: 639 ctatgggttcggatt 653
>gb|DR692054.1|DR692054 EST1082141 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWADH43 3' end, mRNA sequence
Length = 770
Score = 69.9 bits (35), Expect = 1e-010
Identities = 110/135 (81%)
Strand = Plus / Plus
Query: 10 tttgcattttgggtgattgtccatctgtatcccttcctcaaaggtttggttgggaggcaa 69
||||| || ||||||||||| ||| ||||||| ||||| ||||||||| | || |||||
Sbjct: 179 tttgccttctgggtgattgtgcatttgtatcctttcctaaaaggtttgatgggaaggcag 238
Query: 70 aacaggacaccgacaattgtcatcgtctggtccatcctgctggcttcaatcttctcactc 129
||| ||||||| |||||||| || || ||||| || || || || || || || || |||
Sbjct: 239 aaccggacacccacaattgttattgtgtggtctattctactcgcatccattttttctctc 298
Query: 130 ctttgggttcggatt 144
|| ||||||||||||
Sbjct: 299 ctatgggttcggatt 313
>gb|DT632612.1|DT632612 EST1147543 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMFL85 3' end, mRNA sequence
Length = 771
Score = 69.9 bits (35), Expect = 1e-010
Identities = 110/135 (81%)
Strand = Plus / Plus
Query: 10 tttgcattttgggtgattgtccatctgtatcccttcctcaaaggtttggttgggaggcaa 69
||||| || ||||||||||| ||| ||||||| ||||| ||||||||| | || |||||
Sbjct: 432 tttgccttctgggtgattgtgcatttgtatcctttcctaaaaggtttgatgggaaggcag 491
Query: 70 aacaggacaccgacaattgtcatcgtctggtccatcctgctggcttcaatcttctcactc 129
||| ||||||| |||||||| || || ||||| || || || || || || || || |||
Sbjct: 492 aaccggacacccacaattgttattgtgtggtctattctactcgcatccattttttctctc 551
Query: 130 ctttgggttcggatt 144
|| ||||||||||||
Sbjct: 552 ctatgggttcggatt 566
>gb|DT633819.1|DT633819 EST1148750 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMFZ11 3' end, mRNA sequence
Length = 688
Score = 69.9 bits (35), Expect = 1e-010
Identities = 110/135 (81%)
Strand = Plus / Plus
Query: 10 tttgcattttgggtgattgtccatctgtatcccttcctcaaaggtttggttgggaggcaa 69
||||| || ||||||||||| ||| ||||||| ||||| ||||||||| | || |||||
Sbjct: 527 tttgccttctgggtgattgtgcatttgtatcctttcctaaaaggtttgatgggaaggcag 586
Query: 70 aacaggacaccgacaattgtcatcgtctggtccatcctgctggcttcaatcttctcactc 129
||| ||||||| |||||||| || || ||||| || || || || || || || || |||
Sbjct: 587 aaccggacacccacaattgttattgtgtggtctattctactcgcatccattttttctctc 646
Query: 130 ctttgggttcggatt 144
|| ||||||||||||
Sbjct: 647 ctatgggttcggatt 661
>gb|AL749837.1|AL749837 AL749837 AS Pinus pinaster cDNA clone AS01F10 similar to CELLULOSE
SYNTHASE, mRNA sequence
Length = 469
Score = 63.9 bits (32), Expect = 8e-009
Identities = 68/80 (85%)
Strand = Plus / Minus
Query: 10 tttgcattttgggtgattgtccatctgtatcccttcctcaaaggtttggttgggaggcaa 69
||||| |||||||||||||||||||| || || ||||| ||||||||| | || | ||
Sbjct: 386 tttgcgttttgggtgattgtccatctttaccctttcctgaaaggtttgatgggacgacag 327
Query: 70 aacaggacaccgacaattgt 89
||||||||||| ||||||||
Sbjct: 326 aacaggacacccacaattgt 307
>gb|CD023932.1|CD023932 NXRV_018_G08_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda
cDNA clone NXRV_018_G08 5' similar to Arabidopsis
thaliana sequence At5g05170 cellulose synthase
catalytic subunit (Ath-B) see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 161
Score = 63.9 bits (32), Expect = 8e-009
Identities = 68/80 (85%)
Strand = Plus / Plus
Query: 10 tttgcattttgggtgattgtccatctgtatcccttcctcaaaggtttggttgggaggcaa 69
||||| |||||||||||||||||||| || || ||||| ||||||||| | || | ||
Sbjct: 6 tttgcgttttgggtgattgtccatctttaccctttcctgaaaggtttgatgggacgacag 65
Query: 70 aacaggacaccgacaattgt 89
||||||||||| ||||||||
Sbjct: 66 aacaggacacccacaattgt 85
>gb|CF478733.1|CF478733 RTWW3_16_G10.g1_A022 Well-watered loblolly pine roots WW3 Pinus
taeda cDNA clone RTWW3_16_G10_A022 5', mRNA sequence
Length = 695
Score = 63.9 bits (32), Expect = 8e-009
Identities = 68/80 (85%)
Strand = Plus / Plus
Query: 10 tttgcattttgggtgattgtccatctgtatcccttcctcaaaggtttggttgggaggcaa 69
||||| |||||||||||||||||||| || || ||||| ||||||||| | || | ||
Sbjct: 237 tttgcgttttgggtgattgtccatctttaccctttcctgaaaggtttgatgggacgacag 296
Query: 70 aacaggacaccgacaattgt 89
||||||||||| ||||||||
Sbjct: 297 aacaggacacccacaattgt 316
>gb|CV031645.1|CV031645 RTNACL1_2_G07.g1_A029 Roots plus added NaCl Pinus taeda cDNA clone
RTNACL1_2_G07_A029 5', mRNA sequence
Length = 796
Score = 63.9 bits (32), Expect = 8e-009
Identities = 68/80 (85%)
Strand = Plus / Plus
Query: 10 tttgcattttgggtgattgtccatctgtatcccttcctcaaaggtttggttgggaggcaa 69
||||| |||||||||||||||||||| || || ||||| ||||||||| | || | ||
Sbjct: 509 tttgcgttttgggtgattgtccatctttaccctttcctgaaaggtttgatgggacgacag 568
Query: 70 aacaggacaccgacaattgt 89
||||||||||| ||||||||
Sbjct: 569 aacaggacacccacaattgt 588
>gb|DR096307.1|DR096307 STRR1_27_D08.b1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_27_D08_A033 3', mRNA sequence
Length = 797
Score = 63.9 bits (32), Expect = 8e-009
Identities = 68/80 (85%)
Strand = Plus / Minus
Query: 10 tttgcattttgggtgattgtccatctgtatcccttcctcaaaggtttggttgggaggcaa 69
||||| |||||||||||||||||||| || || ||||| ||||||||| | || | ||
Sbjct: 275 tttgcgttttgggtgattgtccatctttaccctttcctgaaaggtttgatgggacgacag 216
Query: 70 aacaggacaccgacaattgt 89
||||||||||| ||||||||
Sbjct: 215 aacaggacacccacaattgt 196
>gb|DR096386.1|DR096386 STRR1_27_D08.g1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_27_D08_A033 5', mRNA sequence
Length = 744
Score = 63.9 bits (32), Expect = 8e-009
Identities = 68/80 (85%)
Strand = Plus / Minus
Query: 10 tttgcattttgggtgattgtccatctgtatcccttcctcaaaggtttggttgggaggcaa 69
||||| |||||||||||||||||||| || || ||||| ||||||||| | || | ||
Sbjct: 537 tttgcgttttgggtgattgtccatctttaccctttcctgaaaggtttgatgggacgacag 478
Query: 70 aacaggacaccgacaattgt 89
||||||||||| ||||||||
Sbjct: 477 aacaggacacccacaattgt 458
>gb|BV079716.1| Pp_CesA4 Pinus pinaster megagametophytes Pinus pinaster STS
genomic, sequence tagged site
Length = 489
Score = 63.9 bits (32), Expect = 8e-009
Identities = 68/80 (85%)
Strand = Plus / Minus
Query: 10 tttgcattttgggtgattgtccatctgtatcccttcctcaaaggtttggttgggaggcaa 69
||||| |||||||||||||||||||| || || ||||| ||||||||| | || | ||
Sbjct: 306 tttgcgttttgggtgattgtccatctttaccctttcctgaaaggtttgatgggacgacag 247
Query: 70 aacaggacaccgacaattgt 89
||||||||||| ||||||||
Sbjct: 246 aacaggacacccacaattgt 227
>gb|AW698152.1|AW698152 NXNV_073_G04_F Nsf Xylem Normal wood Vertical Pinus taeda cDNA
clone NXNV_073_G04 5', mRNA sequence
Length = 240
Score = 61.9 bits (31), Expect = 3e-008
Identities = 46/51 (90%)
Strand = Plus / Plus
Query: 7 ttctttgcattttgggtgattgtccatctgtatcccttcctcaaaggtttg 57
||||||||||| ||||||||||| ||||| ||||| ||||| |||||||||
Sbjct: 101 ttctttgcattctgggtgattgtacatctatatcctttcctgaaaggtttg 151
>gb|BE762150.1|BE762150 NXCI_082_D03_F NXCI (Nsf Xylem Compression wood Inclined) Pinus
taeda cDNA clone NXCI_082_D03 5' similar to Arabidopsis
thaliana sequence At5g44030 cellulose synthase
catalytic subunit-like protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 238
Score = 61.9 bits (31), Expect = 3e-008
Identities = 46/51 (90%)
Strand = Plus / Plus
Query: 7 ttctttgcattttgggtgattgtccatctgtatcccttcctcaaaggtttg 57
||||||||||| ||||||||||| ||||| ||||| ||||| |||||||||
Sbjct: 8 ttctttgcattctgggtgattgtacatctatatcctttcctgaaaggtttg 58
>gb|CD027901.1|CD027901 NXNV_073_G04 Nsf Xylem Normal wood Vertical Pinus taeda cDNA clone
NXNV_073_G04 5' similar to Arabidopsis thaliana sequence
At5g17420 cellulose synthase catalytic subunit (IRX3)
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 240
Score = 61.9 bits (31), Expect = 3e-008
Identities = 46/51 (90%)
Strand = Plus / Plus
Query: 7 ttctttgcattttgggtgattgtccatctgtatcccttcctcaaaggtttg 57
||||||||||| ||||||||||| ||||| ||||| ||||| |||||||||
Sbjct: 101 ttctttgcattctgggtgattgtacatctatatcctttcctgaaaggtttg 151
>gb|DR118030.1|DR118030 RTMG1_10_E11.g1_A029 Roots minus magnesium Pinus taeda cDNA clone
RTMG1_10_E11_A029 5', mRNA sequence
Length = 700
Score = 61.9 bits (31), Expect = 3e-008
Identities = 46/51 (90%)
Strand = Plus / Plus
Query: 7 ttctttgcattttgggtgattgtccatctgtatcccttcctcaaaggtttg 57
||||||||||| ||||||||||| ||||| ||||| ||||| |||||||||
Sbjct: 111 ttctttgcattctgggtgattgtacatctatatcctttcctgaaaggtttg 161
>gb|DR163320.1|DR163320 RTFE1_42_F04.b1_A029 Roots minus iron Pinus taeda cDNA clone
RTFE1_42_F04_A029 3', mRNA sequence
Length = 835
Score = 61.9 bits (31), Expect = 3e-008
Identities = 46/51 (90%)
Strand = Plus / Minus
Query: 7 ttctttgcattttgggtgattgtccatctgtatcccttcctcaaaggtttg 57
||||||||||| ||||||||||| ||||| ||||| ||||| |||||||||
Sbjct: 632 ttctttgcattctgggtgattgtacatctatatcctttcctgaaaggtttg 582
>gb|AW064806.1|AW064806 ST36A06 Pine TriplEx shoot tip library Pinus taeda cDNA clone
ST36A06, mRNA sequence
Length = 596
Score = 58.0 bits (29), Expect = 5e-007
Identities = 67/80 (83%)
Strand = Plus / Plus
Query: 10 tttgcattttgggtgattgtccatctgtatcccttcctcaaaggtttggttgggaggcaa 69
||||| |||||||||||||||||||| || | ||||| ||||||||| | || | ||
Sbjct: 126 tttgcgttttgggtgattgtccatctttacnctttcctgaaaggtttgatgggacgacag 185
Query: 70 aacaggacaccgacaattgt 89
||||||||||| ||||||||
Sbjct: 186 aacaggacacccacaattgt 205
>gb|BX249614.1|BX249614 BX249614 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP026B12, mRNA sequence
Length = 685
Score = 56.0 bits (28), Expect = 2e-006
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 19 tgggtgattgtccatctgtatcccttcctcaaaggt 54
||||||||| ||||| ||||||||||||||||||||
Sbjct: 589 tgggtgattctccatttgtatcccttcctcaaaggt 624
>gb|BX254022.1|BX254022 BX254022 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP092C09, mRNA sequence
Length = 690
Score = 56.0 bits (28), Expect = 2e-006
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 19 tgggtgattgtccatctgtatcccttcctcaaaggt 54
||||||||| ||||| ||||||||||||||||||||
Sbjct: 538 tgggtgattctccatttgtatcccttcctcaaaggt 573
>gb|BX254483.1|BX254483 BX254483 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP099B08, mRNA sequence
Length = 707
Score = 56.0 bits (28), Expect = 2e-006
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 19 tgggtgattgtccatctgtatcccttcctcaaaggt 54
||||||||| ||||| ||||||||||||||||||||
Sbjct: 251 tgggtgattctccatttgtatcccttcctcaaaggt 286
>gb|BX254948.1|BX254948 BX254948 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP108A02, mRNA sequence
Length = 673
Score = 56.0 bits (28), Expect = 2e-006
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 19 tgggtgattgtccatctgtatcccttcctcaaaggt 54
||||||||| ||||| ||||||||||||||||||||
Sbjct: 189 tgggtgattctccatttgtatcccttcctcaaaggt 224
>gb|BX255349.1|BX255349 BX255349 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP004G04, mRNA sequence
Length = 561
Score = 56.0 bits (28), Expect = 2e-006
Identities = 34/36 (94%)
Strand = Plus / Minus
Query: 19 tgggtgattgtccatctgtatcccttcctcaaaggt 54
||||||||| ||||| ||||||||||||||||||||
Sbjct: 398 tgggtgattctccatttgtatcccttcctcaaaggt 363
>gb|BF609149.1|BF609149 NXSI_040_H08_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_040_H08 5' similar to Arabidopsis thaliana
sequence At5g17420 cellulose synthase catalytic subunit
(IRX3) see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 516
Score = 56.0 bits (28), Expect = 2e-006
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 19 tgggtgattgtccatctgtatcccttcctcaaaggt 54
||||||||| ||||| ||||||||||||||||||||
Sbjct: 166 tgggtgattctccatttgtatcccttcctcaaaggt 201
>gb|BF609565.1|BF609565 NXSI_046_C11_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_046_C11 5' similar to Arabidopsis thaliana
sequence At5g17420 cellulose synthase catalytic subunit
(IRX3) see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 453
Score = 56.0 bits (28), Expect = 2e-006
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 19 tgggtgattgtccatctgtatcccttcctcaaaggt 54
||||||||| ||||| ||||||||||||||||||||
Sbjct: 202 tgggtgattctccatttgtatcccttcctcaaaggt 237
>gb|BF777661.1|BF777661 NXSI_073_C10_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda
cDNA clone NXSI_073_C10 5' similar to Arabidopsis
thaliana sequence At5g17420 cellulose synthase
catalytic subunit (IRX3) see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 273
Score = 56.0 bits (28), Expect = 2e-006
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 19 tgggtgattgtccatctgtatcccttcctcaaaggt 54
||||||||| ||||| ||||||||||||||||||||
Sbjct: 46 tgggtgattctccatttgtatcccttcctcaaaggt 81
>gb|BG040499.1|BG040499 NXSI_108_H05_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_108_H05 5' similar to Arabidopsis thaliana
sequence At5g17420 cellulose synthase catalytic subunit
(IRX3) see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 544
Score = 56.0 bits (28), Expect = 2e-006
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 19 tgggtgattgtccatctgtatcccttcctcaaaggt 54
||||||||| ||||| ||||||||||||||||||||
Sbjct: 202 tgggtgattctccatttgtatcccttcctcaaaggt 237
>gb|BG275218.1|BG275218 NXSI_138_C06_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_138_C06 5' similar to Arabidopsis thaliana
sequence At5g17420 cellulose synthase catalytic subunit
(IRX3) see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 450
Score = 56.0 bits (28), Expect = 2e-006
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 19 tgggtgattgtccatctgtatcccttcctcaaaggt 54
||||||||| ||||| ||||||||||||||||||||
Sbjct: 202 tgggtgattctccatttgtatcccttcctcaaaggt 237
>gb|CF666027.1|CF666027 RTCNT1_20_E07.b1_A029 Root control Pinus taeda cDNA clone
RTCNT1_20_E07_A029 3', mRNA sequence
Length = 581
Score = 56.0 bits (28), Expect = 2e-006
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 19 tgggtgattgtccatctgtatcccttcctcaaaggt 54
||||||||| ||||| ||||||||||||||||||||
Sbjct: 109 tgggtgattctccatttgtatcccttcctcaaaggt 144
>gb|CF672816.1|CF672816 RTCNT1_74_D05.b1_A029 Root control Pinus taeda cDNA clone
RTCNT1_74_D05_A029 3', mRNA sequence
Length = 581
Score = 56.0 bits (28), Expect = 2e-006
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 19 tgggtgattgtccatctgtatcccttcctcaaaggt 54
||||||||| ||||| ||||||||||||||||||||
Sbjct: 82 tgggtgattctccatttgtatcccttcctcaaaggt 117
>gb|CO168623.1|CO168623 NDL1_1_A02.g1_A029 Needles control Pinus taeda cDNA clone
NDL1_1_A02_A029 5', mRNA sequence
Length = 662
Score = 56.0 bits (28), Expect = 2e-006
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 19 tgggtgattgtccatctgtatcccttcctcaaaggt 54
||||||||| ||||| ||||||||||||||||||||
Sbjct: 421 tgggtgattctccatttgtatcccttcctcaaaggt 456
>gb|DR682518.1|DR682518 EST1072593 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAAA42, mRNA sequence
Length = 809
Score = 56.0 bits (28), Expect = 2e-006
Identities = 31/32 (96%)
Strand = Plus / Minus
Query: 19 tgggtgattgtccatctgtatcccttcctcaa 50
||||||||||||||||| ||||||||||||||
Sbjct: 542 tgggtgattgtccatctctatcccttcctcaa 511
>gb|AH014319.1|SEG_AY764731S Pinus taeda isolate 27 cellulose synthase genes, partial cds
Length = 1023
Score = 56.0 bits (28), Expect = 2e-006
Identities = 43/48 (89%)
Strand = Plus / Plus
Query: 7 ttctttgcattttgggtgattgtccatctgtatcccttcctcaaaggt 54
||||||||||| ||||| ||||| || |||||||| ||||||||||||
Sbjct: 758 ttctttgcattctgggtcattgtgcacctgtatcctttcctcaaaggt 805
>gb|AY764732.1|AY764731S2 Pinus taeda isolate 27 cellulose synthase gene, partial cds
Length = 452
Score = 56.0 bits (28), Expect = 2e-006
Identities = 43/48 (89%)
Strand = Plus / Plus
Query: 7 ttctttgcattttgggtgattgtccatctgtatcccttcctcaaaggt 54
||||||||||| ||||| ||||| || |||||||| ||||||||||||
Sbjct: 187 ttctttgcattctgggtcattgtgcacctgtatcctttcctcaaaggt 234
>gb|AY789650.1| Pinus taeda cellulose synthase catalytic subunit (CesA1) mRNA,
complete cds
Length = 3127
Score = 56.0 bits (28), Expect = 2e-006
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 19 tgggtgattgtccatctgtatcccttcctcaaaggt 54
||||||||| ||||| ||||||||||||||||||||
Sbjct: 2791 tgggtgattctccatttgtatcccttcctcaaaggt 2826
>gb|AY262815.1| Pinus radiata cellulose synthase (CesA3) mRNA, partial cds
Length = 1333
Score = 56.0 bits (28), Expect = 2e-006
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 19 tgggtgattgtccatctgtatcccttcctcaaaggt 54
||||||||| ||||| ||||||||||||||||||||
Sbjct: 808 tgggtgattctccatttgtatcccttcctcaaaggt 843
>gb|AY262820.1| Pinus radiata cellulose synthase (CesA10) mRNA, complete cds
Length = 4428
Score = 56.0 bits (28), Expect = 2e-006
Identities = 43/48 (89%)
Strand = Plus / Plus
Query: 10 tttgcattttgggtgattgtccatctgtatcccttcctcaaaggtttg 57
||||| |||||||||||||| || || ||||| |||||||||||||||
Sbjct: 3745 tttgctttttgggtgattgttcacctttatcctttcctcaaaggtttg 3792
>gb|BF610213.1|BF610213 NXSI_056_B10_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_056_B10 5' similar to Arabidopsis thaliana
sequence At5g17420 cellulose synthase catalytic subunit
(IRX3) see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 352
Score = 54.0 bits (27), Expect = 8e-006
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 20 gggtgattgtccatctgtatcccttcctcaaaggt 54
|||||||| ||||| ||||||||||||||||||||
Sbjct: 262 gggtgattctccatttgtatcccttcctcaaaggt 296
>gb|BX784298.1|BX784298 BX784298 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone 132B11 similar to Cellulose synthase, mRNA
sequence
Length = 540
Score = 54.0 bits (27), Expect = 8e-006
Identities = 45/51 (88%)
Strand = Plus / Plus
Query: 7 ttctttgcattttgggtgattgtccatctgtatcccttcctcaaaggtttg 57
||||||||||| ||||||||||| ||| | ||||| ||||| |||||||||
Sbjct: 358 ttctttgcattctgggtgattgtacatttatatcctttcctgaaaggtttg 408
>gb|AW697996.1|AW697996 NXNV_079_C07_F Nsf Xylem Normal wood Vertical Pinus taeda cDNA
clone NXNV_079_C07 5' similar to Arabidopsis thaliana
sequence At5g17420 cellulose synthase catalytic subunit
(IRX3) see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 352
Score = 48.1 bits (24), Expect = 5e-004
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 7 ttctttgcattttgggtgattgtccatctgtatcccttcctcaa 50
||||||||||| ||||| ||||| || |||||||| ||||||||
Sbjct: 48 ttctttgcattctgggtcattgtgcacctgtatcctttcctcaa 91
>gb|BG039685.1|BG039685 NXSI_102_H08_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_102_H08 5' similar to Arabidopsis thaliana
sequence At5g17420 cellulose synthase catalytic subunit
(IRX3) see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 546
Score = 48.1 bits (24), Expect = 5e-004
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 7 ttctttgcattttgggtgattgtccatctgtatcccttcctcaa 50
||||||||||| ||||| ||||| || |||||||| ||||||||
Sbjct: 152 ttctttgcattctgggtcattgtgcacctgtatcctttcctcaa 195
>gb|BQ695648.1|BQ695648 NXPV_030_H04_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_030_H04 5' similar to Arabidopsis
thaliana sequence At5g17420 cellulose synthase catalytic
subunit (IRX3) see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 491
Score = 48.1 bits (24), Expect = 5e-004
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 7 ttctttgcattttgggtgattgtccatctgtatcccttcctcaa 50
||||||||||| ||||| ||||| || |||||||| ||||||||
Sbjct: 101 ttctttgcattctgggtcattgtgcacctgtatcctttcctcaa 144
>gb|BQ697774.1|BQ697774 NXPV_052_F10_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_052_F10 5' similar to Arabidopsis
thaliana sequence At5g17420 cellulose synthase catalytic
subunit (IRX3) see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 523
Score = 48.1 bits (24), Expect = 5e-004
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 7 ttctttgcattttgggtgattgtccatctgtatcccttcctcaa 50
||||||||||| ||||| ||||| || |||||||| ||||||||
Sbjct: 101 ttctttgcattctgggtcattgtgcacctgtatcctttcctcaa 144
>gb|BQ703105.1|BQ703105 NXSI_136_D09_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_136_D09 5' similar to Arabidopsis thaliana
sequence At5g17420 cellulose synthase catalytic subunit
(IRX3) see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 483
Score = 48.1 bits (24), Expect = 5e-004
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 7 ttctttgcattttgggtgattgtccatctgtatcccttcctcaa 50
||||||||||| ||||| ||||| || |||||||| ||||||||
Sbjct: 134 ttctttgcattctgggtcattgtgcacctgtatcctttcctcaa 177
>gb|DR060720.1|DR060720 RTNIT1_29_C08.g1_A029 Roots minus nitrogen Pinus taeda cDNA clone
RTNIT1_29_C08_A029 5', mRNA sequence
Length = 789
Score = 48.1 bits (24), Expect = 5e-004
Identities = 39/44 (88%)
Strand = Plus / Minus
Query: 7 ttctttgcattttgggtgattgtccatctgtatcccttcctcaa 50
||||||||||| ||||| ||||| || |||||||| ||||||||
Sbjct: 707 ttctttgcattctgggtcattgtgcacctgtatcctttcctcaa 664
>dbj|BD236020.1| Materials and method for modification of plant cell wall
polysaccharides
Length = 3851
Score = 48.1 bits (24), Expect = 5e-004
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 7 ttctttgcattttgggtgattgtccatctgtatcccttcctcaa 50
||||||||||| ||||| ||||| || |||||||| ||||||||
Sbjct: 3210 ttctttgcattctgggtcattgtgcacctgtatcctttcctcaa 3253
>gb|AY639654.1| Pinus radiata cellulose synthase catalytic subunit (CesA1) mRNA,
complete cds
Length = 3911
Score = 48.1 bits (24), Expect = 5e-004
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 7 ttctttgcattttgggtgattgtccatctgtatcccttcctcaa 50
||||||||||| ||||| ||||| || |||||||| ||||||||
Sbjct: 3226 ttctttgcattctgggtcattgtgcacctgtatcctttcctcaa 3269
>gb|AH014290.1|SEG_AY764673S Pinus taeda isolate 11 cellulose synthase genes, partial cds
Length = 1023
Score = 48.1 bits (24), Expect = 5e-004
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 7 ttctttgcattttgggtgattgtccatctgtatcccttcctcaa 50
||||||||||| ||||| ||||| || |||||||| ||||||||
Sbjct: 758 ttctttgcattctgggtcattgtgcacctgtatcctttcctcaa 801
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 76,084
Number of Sequences: 355925
Number of extensions: 76084
Number of successful extensions: 21825
Number of sequences better than 0.5: 167
Number of HSP's better than 0.5 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 21517
Number of HSP's gapped (non-prelim): 300
length of query: 671
length of database: 217,277,237
effective HSP length: 19
effective length of query: 652
effective length of database: 210,514,662
effective search space: 137255559624
effective search space used: 137255559624
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)