BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 1804918.2.5
(733 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CF474118.1|CF474118 RTWW2_18_F04.g1_A021 Well-watered lo... 101 4e-020
gb|CF474719.1|CF474719 RTWW2_7_H10.g1_A021 Well-watered lob... 98 6e-019
gb|CF387891.1|CF387891 RTDR1_18_F09.g1_A015 Loblolly pine r... 94 1e-017
gb|CF400139.1|CF400139 RTWW1_3_H05.g1_A015 Well-watered lob... 94 1e-017
gb|CF672186.1|CF672186 RTCNT1_62_A03.b1_A029 Root control P... 94 1e-017
gb|CO175804.1|CO175804 NDL1_57_D06.b1_A029 Needles control ... 94 1e-017
gb|CO367528.1|CO367528 RTK1_34_G11.g1_A029 Roots minus pota... 94 1e-017
gb|CV147649.1|CV147649 EST858858 Sequencing ESTs from loblo... 94 1e-017
gb|DN460695.1|DN460695 EST956494 Sequencing ESTs from loblo... 94 1e-017
gb|DN462689.1|DN462689 EST958488 Sequencing ESTs from loblo... 94 1e-017
gb|DR025028.1|DR025028 STRS1_69_D08.b1_A034 Shoot tip pitch... 94 1e-017
gb|DR025491.1|DR025491 STRS1_71_H12.g1_A034 Shoot tip pitch... 94 1e-017
gb|DR093099.1|DR093099 STRR1_6_B07.b1_A033 Stem Response Re... 94 1e-017
gb|DR093169.1|DR093169 STRR1_6_B07.g1_A033 Stem Response Re... 94 1e-017
gb|DR099634.1|DR099634 STRR1_57_B02.b1_A033 Stem Response R... 94 1e-017
gb|DR099694.1|DR099694 STRR1_57_B02.g1_A033 Stem Response R... 94 1e-017
gb|DR178936.1|DR178936 RTMNUT1_14_H08.g1_A029 Roots minus m... 94 1e-017
gb|DR180061.1|DR180061 RTMNUT1_26_E12.b1_A029 Roots minus m... 94 1e-017
gb|DR180143.1|DR180143 RTMNUT1_26_E12.g1_A029 Roots minus m... 94 1e-017
gb|CF400481.1|CF400481 RTWW1_5_F02.g1_A015 Well-watered lob... 90 1e-016
gb|CF671997.1|CF671997 RTCNT1_60_D07.g1_A029 Root control P... 90 1e-016
gb|DR016208.1|DR016208 STRS1_8_C03.g1_A034 Shoot tip pitch ... 90 1e-016
gb|DR019892.1|DR019892 STRS1_33_E03.b1_A034 Shoot tip pitch... 90 1e-016
gb|DR021389.1|DR021389 STRS1_44_G08.b1_A034 Shoot tip pitch... 90 1e-016
gb|DR023572.1|DR023572 STRS1_58_C10.g1_A034 Shoot tip pitch... 90 1e-016
gb|DR101560.1|DR101560 STRR1_74_E03.b1_A033 Stem Response R... 90 1e-016
gb|DR101629.1|DR101629 STRR1_74_E03.g1_A033 Stem Response R... 90 1e-016
gb|DR178852.1|DR178852 RTMNUT1_14_H08.b1_A029 Roots minus m... 90 1e-016
gb|BE520104.1|BE520104 NXCI_016_H05_F NXCI (Nsf Xylem Compr... 86 2e-015
gb|BG275381.1|BG275381 NXSI_141_C02_F NXSI (Nsf Xylem Side ... 86 2e-015
gb|CF386306.1|CF386306 RTDR1_13_D11.g1_A015 Loblolly pine r... 86 2e-015
gb|CF400303.1|CF400303 RTWW1_4_E12.g1_A015 Well-watered lob... 86 2e-015
gb|CF400876.1|CF400876 RTWW1_8_B05.g1_A015 Well-watered lob... 86 2e-015
gb|CF663680.1|CF663680 RTCNT1_4_B03.g1_A029 Root control Pi... 86 2e-015
gb|CN783902.1|CN783902 EST782593 Sequencing ESTs from loblo... 86 2e-015
gb|CO174224.1|CO174224 NDL1_42_D01.g1_A029 Needles control ... 86 2e-015
gb|CO201181.1|CO201181 RTCNT2_4_D06.b1_A029 Root control 2 ... 86 2e-015
gb|CO411231.1|CO411231 EST841616 Sequencing ESTs from loblo... 86 2e-015
gb|CO413491.1|CO413491 EST843876 Sequencing ESTs from loblo... 86 2e-015
gb|CO361282.1|CO361282 NDL2_3_H08.g1_A029 Needles control 2... 86 2e-015
gb|CV133908.1|CV133908 EST845117 Sequencing ESTs from loblo... 86 2e-015
gb|CV135319.1|CV135319 EST846528 Sequencing ESTs from loblo... 86 2e-015
gb|CV136622.1|CV136622 EST847831 Sequencing ESTs from loblo... 86 2e-015
gb|CV137349.1|CV137349 EST848558 Sequencing ESTs from loblo... 86 2e-015
gb|CV137492.1|CV137492 EST848701 Sequencing ESTs from loblo... 86 2e-015
gb|CV137856.1|CV137856 EST849065 Sequencing ESTs from loblo... 86 2e-015
gb|CV137973.1|CV137973 EST849182 Sequencing ESTs from loblo... 86 2e-015
gb|CV138543.1|CV138543 EST849752 Sequencing ESTs from loblo... 86 2e-015
gb|CV138881.1|CV138881 EST850090 Sequencing ESTs from loblo... 86 2e-015
gb|CV139095.1|CV139095 EST850304 Sequencing ESTs from loblo... 86 2e-015
gb|CV143521.1|CV143521 EST854730 Sequencing ESTs from loblo... 86 2e-015
gb|CV145594.1|CV145594 EST856803 Sequencing ESTs from loblo... 86 2e-015
gb|CV146001.1|CV146001 EST857210 Sequencing ESTs from loblo... 86 2e-015
gb|CV146320.1|CV146320 EST857529 Sequencing ESTs from loblo... 86 2e-015
gb|CV147265.1|CV147265 EST858474 Sequencing ESTs from loblo... 86 2e-015
gb|CX651365.1|CX651365 COLD1_51_H03.g1_A029 Root cold Pinus... 86 2e-015
gb|CX652139.1|CX652139 COLD1_57_E03.b1_A029 Root cold Pinus... 86 2e-015
gb|DN445694.1|DN445694 EST941493 Sequencing ESTs from loblo... 86 2e-015
gb|DN446958.1|DN446958 EST942757 Sequencing ESTs from loblo... 86 2e-015
gb|DN447788.1|DN447788 EST943587 Sequencing ESTs from loblo... 86 2e-015
gb|DN451081.1|DN451081 EST946880 Sequencing ESTs from loblo... 86 2e-015
gb|DN453114.1|DN453114 EST948913 Sequencing ESTs from loblo... 86 2e-015
gb|DN455453.1|DN455453 EST951252 Sequencing ESTs from loblo... 86 2e-015
gb|DN455563.1|DN455563 EST951362 Sequencing ESTs from loblo... 86 2e-015
gb|DN456589.1|DN456589 EST952388 Sequencing ESTs from loblo... 86 2e-015
gb|DN457081.1|DN457081 EST952880 Sequencing ESTs from loblo... 86 2e-015
gb|DN457605.1|DN457605 EST953404 Sequencing ESTs from loblo... 86 2e-015
gb|DN457898.1|DN457898 EST953697 Sequencing ESTs from loblo... 86 2e-015
gb|DN457925.1|DN457925 EST953724 Sequencing ESTs from loblo... 86 2e-015
gb|DN458115.1|DN458115 EST953914 Sequencing ESTs from loblo... 86 2e-015
gb|DN459101.1|DN459101 EST954900 Sequencing ESTs from loblo... 86 2e-015
gb|DN462207.1|DN462207 EST958006 Sequencing ESTs from loblo... 86 2e-015
gb|DN462754.1|DN462754 EST958553 Sequencing ESTs from loblo... 86 2e-015
gb|DN463808.1|DN463808 EST959607 Sequencing ESTs from loblo... 86 2e-015
gb|DN464277.1|DN464277 EST960076 Sequencing ESTs from loblo... 86 2e-015
gb|DN465502.1|DN465502 EST961301 Sequencing ESTs from loblo... 86 2e-015
gb|DN465684.1|DN465684 EST961483 Sequencing ESTs from loblo... 86 2e-015
gb|DR014631.1|DR014631 HEAT1_50_D11.g1_A029 Root at 37 C fo... 86 2e-015
gb|DR048524.1|DR048524 RTBOR1_9_A12.g1_A029 Roots plus adde... 86 2e-015
gb|DR070033.1|DR070033 RTDK1_10_H02.g1_A029 Roots, dark Pin... 86 2e-015
gb|DR071133.1|DR071133 RTDK1_17_G08.g1_A029 Roots, dark Pin... 86 2e-015
gb|DR080326.1|DR080326 RTFEPL1_21_H11.g1_A029 Roots plus ad... 86 2e-015
gb|DR096503.1|DR096503 STRR1_28_H08.b1_A033 Stem Response R... 86 2e-015
gb|DR112603.1|DR112603 RTS1_29_G02.b1_A029 Roots minus sulf... 86 2e-015
gb|DR162217.1|DR162217 RTFE1_16_A12.g1_A029 Roots minus iro... 86 2e-015
gb|DR181373.1|DR181373 RTMNUT1_38_B07.g2_A029 Roots minus m... 86 2e-015
gb|DT624423.1|DT624423 EST1158698 Sequencing ESTs from lobl... 86 2e-015
gb|DT625015.1|DT625015 EST1159290 Sequencing ESTs from lobl... 86 2e-015
gb|DT627235.1|DT627235 EST1160311 Sequencing ESTs from lobl... 86 2e-015
gb|CX713747.1|CX713747 RTPQ1_12_D08.g1_A032 Roots treated w... 84 9e-015
gb|BX248907.1|BX248907 BX248907 Pinus pinaster differenciat... 82 4e-014
gb|BE657088.1|BE657088 NXCI_042_D11_F NXCI (Nsf Xylem Compr... 82 4e-014
gb|CF667142.1|CF667142 RTCNT1_28_A04.g1_A029 Root control P... 82 4e-014
gb|CF671375.1|CF671375 RTCNT1_56_D12.g1_A029 Root control P... 82 4e-014
gb|BX675171.1|BX675171 BX675171 RN Pinus pinaster cDNA clon... 82 4e-014
gb|BX679239.1|BX679239 BX679239 RS Pinus pinaster cDNA clon... 82 4e-014
gb|BX681413.1|BX681413 BX681413 RS Pinus pinaster cDNA clon... 82 4e-014
gb|BX681480.1|BX681480 BX681480 RS Pinus pinaster cDNA clon... 82 4e-014
gb|BX682186.1|BX682186 BX682186 RS Pinus pinaster cDNA clon... 82 4e-014
gb|CR392122.1|CR392122 CR392122 RN Pinus pinaster cDNA clon... 82 4e-014
gb|CV135118.1|CV135118 EST846327 Sequencing ESTs from loblo... 82 4e-014
gb|CX650205.1|CX650205 COLD1_44_D12.b1_A029 Root cold Pinus... 82 4e-014
gb|DR110394.1|DR110394 RTS1_10_D05.g1_A029 Roots minus sulf... 82 4e-014
gb|DR112678.1|DR112678 RTS1_29_G02.g1_A029 Roots minus sulf... 82 4e-014
gb|DR117892.1|DR117892 RTMG1_9_H02.g1_A029 Roots minus magn... 82 4e-014
gb|DR181297.1|DR181297 RTMNUT1_38_B07.b2_A029 Roots minus m... 82 4e-014
gb|BQ696001.1|BQ696001 NXPV_035_C07_F NXPV (Nsf Xylem Plani... 78 6e-013
gb|BQ696456.1|BQ696456 NXPV_041_E05_F NXPV (Nsf Xylem Plani... 78 6e-013
gb|CN784034.1|CN784034 EST782725 Sequencing ESTs from loblo... 78 6e-013
gb|CN785978.1|CN785978 EST784669 Sequencing ESTs from loblo... 78 6e-013
gb|CO410745.1|CO410745 EST841130 Sequencing ESTs from loblo... 78 6e-013
gb|CO411901.1|CO411901 EST842286 Sequencing ESTs from loblo... 78 6e-013
gb|CO412528.1|CO412528 EST842913 Sequencing ESTs from loblo... 78 6e-013
gb|CV134043.1|CV134043 EST845252 Sequencing ESTs from loblo... 78 6e-013
gb|CV136664.1|CV136664 EST847873 Sequencing ESTs from loblo... 78 6e-013
gb|CV136875.1|CV136875 EST848084 Sequencing ESTs from loblo... 78 6e-013
gb|CV138026.1|CV138026 EST849235 Sequencing ESTs from loblo... 78 6e-013
gb|CV139126.1|CV139126 EST850335 Sequencing ESTs from loblo... 78 6e-013
gb|CV143875.1|CV143875 EST855084 Sequencing ESTs from loblo... 78 6e-013
gb|CV145549.1|CV145549 EST856758 Sequencing ESTs from loblo... 78 6e-013
gb|CV147500.1|CV147500 EST858709 Sequencing ESTs from loblo... 78 6e-013
gb|CV147701.1|CV147701 EST858910 Sequencing ESTs from loblo... 78 6e-013
gb|CX649536.1|CX649536 COLD1_35_H06.g1_A029 Root cold Pinus... 78 6e-013
gb|DN446023.1|DN446023 EST941822 Sequencing ESTs from loblo... 78 6e-013
gb|DN447430.1|DN447430 EST943229 Sequencing ESTs from loblo... 78 6e-013
gb|DN447483.1|DN447483 EST943282 Sequencing ESTs from loblo... 78 6e-013
gb|DN449505.1|DN449505 EST945304 Sequencing ESTs from loblo... 78 6e-013
gb|DN453639.1|DN453639 EST949438 Sequencing ESTs from loblo... 78 6e-013
gb|DN454312.1|DN454312 EST950111 Sequencing ESTs from loblo... 78 6e-013
gb|DN457901.1|DN457901 EST953700 Sequencing ESTs from loblo... 78 6e-013
gb|DN459549.1|DN459549 EST955348 Sequencing ESTs from loblo... 78 6e-013
gb|DR016154.1|DR016154 STRS1_8_C03.b1_A034 Shoot tip pitch ... 78 6e-013
gb|DR110306.1|DR110306 RTS1_10_D05.b1_A029 Roots minus sulf... 78 6e-013
gb|AA557044.1|AA557044 886 Loblolly pine N Pinus taeda cDNA... 76 2e-012
gb|AW758720.1|AW758720 NXNV_086_F01_F Nsf Xylem Normal wood... 74 9e-012
gb|CF663603.1|CF663603 RTCNT1_4_B03.b1_A029 Root control Pi... 70 1e-010
gb|CO361199.1|CO361199 NDL2_3_H08.b1_A029 Needles control 2... 70 1e-010
gb|CX650283.1|CX650283 COLD1_44_D12.g1_A029 Root cold Pinus... 70 1e-010
gb|DR052858.1|DR052858 RTCA1_7_G12.b1_A029 Roots minus calc... 70 1e-010
gb|DR069946.1|DR069946 RTDK1_10_H02.b1_A029 Roots, dark Pin... 70 1e-010
gb|DR071054.1|DR071054 RTDK1_17_G08.b1_A029 Roots, dark Pin... 70 1e-010
gb|DR080253.1|DR080253 RTFEPL1_21_H11.b1_A029 Roots plus ad... 70 1e-010
gb|DR178582.1|DR178582 RTMNUT1_12_D12.g1_A029 Roots minus m... 70 1e-010
gb|DR385811.1|DR385811 RTHG1_11_B07.b1_A029 Roots plus adde... 70 1e-010
gb|CO369727.1|CO369727 RTK1_53_D06.b1_A029 Roots minus pota... 66 2e-009
gb|CV133935.1|CV133935 EST845144 Sequencing ESTs from loblo... 66 2e-009
gb|BE656885.1|BE656885 NXCI_057_F08_F NXCI (Nsf Xylem Compr... 64 9e-009
gb|CD017575.1|CD017575 NXCI_128_D09_F NXCI (Nsf Xylem Compr... 62 3e-008
gb|CO175869.1|CO175869 NDL1_57_D06.g1_A029 Needles control ... 62 3e-008
gb|DR387173.1|DR387173 RTHG1_20_A05.b1_A029 Roots plus adde... 62 3e-008
gb|AW064650.1|AW064650 ST34A10 Pine TriplEx shoot tip libra... 60 1e-007
gb|CX649456.1|CX649456 COLD1_35_H06.b1_A029 Root cold Pinus... 60 1e-007
gb|DR014549.1|DR014549 HEAT1_50_D11.b1_A029 Root at 37 C fo... 56 2e-006
gb|CF386208.1|CF386208 RTDR1_13_D11.b1_A015 Loblolly pine r... 54 8e-006
gb|CF398458.1|CF398458 RTDS3_12_G11.g1_A022 Drought-stresse... 54 8e-006
gb|DR049321.1|DR049321 RTBOR1_15_A11.g1_A029 Roots plus add... 54 8e-006
gb|DR096588.1|DR096588 STRR1_28_H08.g1_A033 Stem Response R... 52 3e-005
gb|CF387817.1|CF387817 RTDR1_18_F09.b1_A015 Loblolly pine r... 50 1e-004
gb|CF473974.1|CF473974 RTWW2_18_F04.b1_A021 Well-watered lo... 50 1e-004
gb|DR061161.1|DR061161 RTNIT1_32_A11.g1_A029 Roots minus ni... 50 1e-004
gb|BE758647.1|BE758647 NXCI_069_E11_F NXCI (Nsf Xylem Compr... 48 5e-004
gb|CF400223.1|CF400223 RTWW1_4_E12.b1_A015 Well-watered lob... 44 0.008
gb|CF666500.1|CF666500 RTCNT1_23_F05.g1_A029 Root control P... 44 0.008
gb|CV137246.1|CV137246 EST848455 Sequencing ESTs from loblo... 44 0.008
gb|DN459276.1|DN459276 EST955075 Sequencing ESTs from loblo... 44 0.008
gb|DR023500.1|DR023500 STRS1_58_C10.b1_A034 Shoot tip pitch... 44 0.008
gb|DR178495.1|DR178495 RTMNUT1_12_D12.b1_A029 Roots minus m... 44 0.008
gb|BX253888.1|BX253888 BX253888 Pinus pinaster differenciat... 42 0.031
gb|BE451888.1|BE451888 NXCI_004_G08_F NXCI (Nsf Xylem Compr... 42 0.031
gb|BG319400.1|BG319400 NXPV_027_E04_F NXPV (Nsf Xylem Plani... 42 0.031
gb|CF391331.1|CF391331 RTDR3_1_H09.b1_A022 Loblolly pine ro... 42 0.031
gb|CV134305.1|CV134305 EST845514 Sequencing ESTs from loblo... 42 0.031
gb|DR025107.1|DR025107 STRS1_69_D08.g1_A034 Shoot tip pitch... 42 0.031
gb|DR059696.1|DR059696 RTNIT1_19_E08.b1_A029 Roots minus ni... 42 0.031
gb|DR079957.1|DR079957 RTFEPL1_19_B06.b1_A029 Roots plus ad... 42 0.031
gb|DR162134.1|DR162134 RTFE1_16_A12.b1_A029 Roots minus iro... 42 0.031
gb|DR741994.1|DR741994 RTCU1_1_B12.b1_A029 Roots plus added... 42 0.031
gb|AA739675.1|AA739675 440 PtIFG2 Pinus taeda cDNA clone 87... 40 0.12
gb|BX249407.1|BX249407 BX249407 Pinus pinaster differenciat... 38 0.49
gb|CF400367.1|CF400367 RTWW1_5_F02.b1_A015 Well-watered lob... 38 0.49
gb|CF666433.1|CF666433 RTCNT1_23_F05.b1_A029 Root control P... 38 0.49
gb|CF667058.1|CF667058 RTCNT1_28_A04.b1_A029 Root control P... 38 0.49
gb|CF671917.1|CF671917 RTCNT1_60_D07.b1_A029 Root control P... 38 0.49
gb|BX676871.1|BX676871 BX676871 RN Pinus pinaster cDNA clon... 38 0.49
gb|DN462101.1|DN462101 EST957900 Sequencing ESTs from loblo... 38 0.49
gb|DR116803.1|DR116803 RTMG1_2_H05.g1_A029 Roots minus magn... 38 0.49
gb|DR744533.1|DR744533 RTCU1_23_D03.b1_A029 Roots plus adde... 38 0.49
>gb|CF474118.1|CF474118 RTWW2_18_F04.g1_A021 Well-watered loblolly pine roots WW2 Pinus
taeda cDNA clone RTWW2_18_F04_A021 5', mRNA sequence
Length = 749
Score = 101 bits (51), Expect = 4e-020
Identities = 243/307 (79%)
Strand = Plus / Minus
Query: 417 tgtgcttgatgttcttgaccttcttccggtccctctcgggctccttgagcgccttgatga 476
|||||||||||||||| |||||||| || |||||||||||||| ||||| || ||||
Sbjct: 365 tgtgcttgatgttcttcgtcttcttcctatctctctcgggctccttcagcgcttttatga 306
Query: 477 cgagcgcggcggcggaggggacgacggagaccttggcctggcggttctggacggtgagct 536
| || || || || || || || | |||||||||||| | |||||| ||||||||||
Sbjct: 305 ccagggcagcagcactcggcaccacagcgaccttggcctgcctgttctgaacggtgagct 246
Query: 537 tgacggtgacgcgcaggcccttccagtccttggccgtctccttggcgatgtcctcgccga 596
| || ||||| | || |||||||||||||| || || ||||| || ||||| || ||||
Sbjct: 245 ttaccgtgaccctcaaacccttccagtccttcgcagtttcctttgcaatgtcttctccga 186
Query: 597 tcttcttcggggagagcccgagcgggccgatcttgggcgccagggacgacgccgcgccga 656
|||||||||| || || || || || ||||||||||| ||||| ||||| || || || |
Sbjct: 185 tcttcttcggcgatagacccagaggaccgatcttgggggccagagacgaagcagctccca 126
Query: 657 cctcgccgcccgtcacccggacgaagacctccaccacctgcgacgggtcgagcttgggcg 716
| ||||| || || |||| ||| | ||||| ||||| || || || || |||||||| |
Sbjct: 125 cttcgccccctgtgaccctcacgtacacctcgaccacttgggaaggatcaagcttgggag 66
Query: 717 gcatggc 723
|||||||
Sbjct: 65 gcatggc 59
>gb|CF474719.1|CF474719 RTWW2_7_H10.g1_A021 Well-watered loblolly pine roots WW2 Pinus
taeda cDNA clone RTWW2_7_H10_A021 5', mRNA sequence
Length = 719
Score = 97.6 bits (49), Expect = 6e-019
Identities = 184/229 (80%)
Strand = Plus / Minus
Query: 417 tgtgcttgatgttcttgaccttcttccggtccctctcgggctccttgagcgccttgatga 476
|||||||||||||||| |||||||| || |||||||||||||| ||||| || ||||
Sbjct: 577 tgtgcttgatgttcttcgtcttcttcctatctctctcgggctccttcagcgcttttatga 518
Query: 477 cgagcgcggcggcggaggggacgacggagaccttggcctggcggttctggacggtgagct 536
| || || || || || || || | |||||||||||| | |||||| ||||||||||
Sbjct: 517 ccagggcagcagcactcggcaccacagcgaccttggcctgcctgttctgaacggtgagct 458
Query: 537 tgacggtgacgcgcaggcccttccagtccttggccgtctccttggcgatgtcctcgccga 596
| || ||||| | || |||||||||||||| || || ||||| || ||||| || ||||
Sbjct: 457 ttaccgtgaccctcaaacccttccagtccttcgcagtttcctttgcaatgtcttctccga 398
Query: 597 tcttcttcggggagagcccgagcgggccgatcttgggcgccagggacga 645
|||||||||| || || || || || ||||||||||| ||||| |||||
Sbjct: 397 tcttcttcggcgatagacccagaggaccgatcttgggggccagagacga 349
>gb|CF387891.1|CF387891 RTDR1_18_F09.g1_A015 Loblolly pine roots recovering from drought
DR1 Pinus taeda cDNA clone RTDR1_18_F09_A015 5', mRNA
sequence
Length = 790
Score = 93.7 bits (47), Expect = 1e-017
Identities = 242/307 (78%)
Strand = Plus / Minus
Query: 417 tgtgcttgatgttcttgaccttcttccggtccctctcgggctccttgagcgccttgatga 476
|||||||||||||||| |||||||| || |||||||||||||| ||||| || ||||
Sbjct: 343 tgtgcttgatgttcttcgtcttcttcctatctctctcgggctccttcagcgcttttatga 284
Query: 477 cgagcgcggcggcggaggggacgacggagaccttggcctggcggttctggacggtgagct 536
| || || || || || || || | |||||||||||| | |||||| ||||||||||
Sbjct: 283 ccagggcagcagcactcggcaccacagcgaccttggcctgcctgttctgaacggtgagct 224
Query: 537 tgacggtgacgcgcaggcccttccagtccttggccgtctccttggcgatgtcctcgccga 596
| || ||||| | || |||||||||||||| || || ||||| || ||||| || ||||
Sbjct: 223 ttaccgtgaccctcaaacccttccagtccttcgcagtttcctttgcaatgtcttctccga 164
Query: 597 tcttcttcggggagagcccgagcgggccgatcttgggcgccagggacgacgccgcgccga 656
||||||| || || || || || || ||||||||||| ||||| ||||| || || || |
Sbjct: 163 tcttcttgggcgatagacccagaggaccgatcttgggggccagagacgaagcagctccca 104
Query: 657 cctcgccgcccgtcacccggacgaagacctccaccacctgcgacgggtcgagcttgggcg 716
| ||||| || || |||| ||| | ||||| ||||| || || || || |||||||| |
Sbjct: 103 cttcgccccctgtgaccctcacgtacacctcgaccacttgggaaggatcaagcttgggag 44
Query: 717 gcatggc 723
|||||||
Sbjct: 43 gcatggc 37
>gb|CF400139.1|CF400139 RTWW1_3_H05.g1_A015 Well-watered loblolly pine roots WW1 Pinus
taeda cDNA clone RTWW1_3_H05_A015 5', mRNA sequence
Length = 727
Score = 93.7 bits (47), Expect = 1e-017
Identities = 242/307 (78%)
Strand = Plus / Minus
Query: 417 tgtgcttgatgttcttgaccttcttccggtccctctcgggctccttgagcgccttgatga 476
|||||||||||||||| |||||||| || |||||||||||||| ||||| || ||||
Sbjct: 382 tgtgcttgatgttcttcgtcttcttcctatctctctcgggctccttcagcgcttttatga 323
Query: 477 cgagcgcggcggcggaggggacgacggagaccttggcctggcggttctggacggtgagct 536
| || || || || || || || | |||||||||||| | |||||| ||||||||||
Sbjct: 322 ccagggcagcagcactcggcaccacagcgaccttggcctgcctgttctgaacggtgagct 263
Query: 537 tgacggtgacgcgcaggcccttccagtccttggccgtctccttggcgatgtcctcgccga 596
| || ||||| | || |||||||||||||| || || ||||| || ||||| || ||||
Sbjct: 262 ttaccgtgaccctcaaacccttccagtccttcgcagtttcctttgcaatgtcttctccga 203
Query: 597 tcttcttcggggagagcccgagcgggccgatcttgggcgccagggacgacgccgcgccga 656
||||||| || || || || || || ||||||||||| ||||| ||||| || || || |
Sbjct: 202 tcttcttgggcgatagacccagaggaccgatcttgggggccagagacgaagcagctccca 143
Query: 657 cctcgccgcccgtcacccggacgaagacctccaccacctgcgacgggtcgagcttgggcg 716
| ||||| || || |||| ||| | ||||| ||||| || || || || |||||||| |
Sbjct: 142 cttcgccccctgtgaccctcacgtacacctcgaccacttgggaaggatcaagcttgggag 83
Query: 717 gcatggc 723
|||||||
Sbjct: 82 gcatggc 76
Score = 38.2 bits (19), Expect = 0.49
Identities = 76/95 (80%)
Strand = Plus / Minus
Query: 269 tccttggggtccttgccgtcgacggtgcacccgacgctgacgcaggtgccgaggatctcc 328
|||||||| ||||| || || || ||||| |||||| || ||| || || || ||||||
Sbjct: 530 tccttgggatcctttccatccaccgtgcagccgacggagaggcatgtacccagaatctcc 471
Query: 329 ttgacggtgccggccaactccttggccatggacct 363
|| || | |||||||| ||||| |||||||||||
Sbjct: 470 ttcactgatccggccaattccttcgccatggacct 436
>gb|CF672186.1|CF672186 RTCNT1_62_A03.b1_A029 Root control Pinus taeda cDNA clone
RTCNT1_62_A03_A029 3', mRNA sequence
Length = 708
Score = 93.7 bits (47), Expect = 1e-017
Identities = 242/307 (78%)
Strand = Plus / Plus
Query: 417 tgtgcttgatgttcttgaccttcttccggtccctctcgggctccttgagcgccttgatga 476
|||||||||||||||| |||||||| || |||||||||||||| ||||| || ||||
Sbjct: 308 tgtgcttgatgttcttcgtcttcttcctatctctctcgggctccttcagcgcttttatga 367
Query: 477 cgagcgcggcggcggaggggacgacggagaccttggcctggcggttctggacggtgagct 536
| || || || || || || || | |||||||||||| | |||||| ||||||||||
Sbjct: 368 ccagggcagcagcactcggcaccacagcgaccttggcctgcctgttctgaacggtgagct 427
Query: 537 tgacggtgacgcgcaggcccttccagtccttggccgtctccttggcgatgtcctcgccga 596
| || ||||| | || |||||||||||||| || || ||||| || ||||| || ||||
Sbjct: 428 ttaccgtgaccctcaaacccttccagtccttcgcagtttcctttgcaatgtcttctccga 487
Query: 597 tcttcttcggggagagcccgagcgggccgatcttgggcgccagggacgacgccgcgccga 656
||||||| || || || || || || ||||||||||| ||||| ||||| || || || |
Sbjct: 488 tcttcttgggcgatagacccagaggaccgatcttgggggccagagacgaagcagctccca 547
Query: 657 cctcgccgcccgtcacccggacgaagacctccaccacctgcgacgggtcgagcttgggcg 716
| ||||| || || |||| ||| | ||||| ||||| || || || || |||||||| |
Sbjct: 548 cttcgccccctgtgaccctcacgtacacctcgaccacttgggaaggatcaagcttgggag 607
Query: 717 gcatggc 723
|||||||
Sbjct: 608 gcatggc 614
>gb|CO175804.1|CO175804 NDL1_57_D06.b1_A029 Needles control Pinus taeda cDNA clone
NDL1_57_D06_A029 3', mRNA sequence
Length = 796
Score = 93.7 bits (47), Expect = 1e-017
Identities = 242/307 (78%)
Strand = Plus / Plus
Query: 417 tgtgcttgatgttcttgaccttcttccggtccctctcgggctccttgagcgccttgatga 476
|||||||||||||||| |||||||| || |||||||||||||| ||||| || ||||
Sbjct: 403 tgtgcttgatgttcttcgtcttcttcctatctctctcgggctccttcagcgcttttatga 462
Query: 477 cgagcgcggcggcggaggggacgacggagaccttggcctggcggttctggacggtgagct 536
| || || || || || || || | |||||||||||| | |||||| ||||||||||
Sbjct: 463 ccagggcagcagcactcggcaccacagcgaccttggcctgcctgttctgaacggtgagct 522
Query: 537 tgacggtgacgcgcaggcccttccagtccttggccgtctccttggcgatgtcctcgccga 596
| || ||||| | || |||||||||||||| || || ||||| || ||||| || ||||
Sbjct: 523 ttaccgtgaccctcaaacccttccagtccttcgcagtttcctttgcaatgtcttctccga 582
Query: 597 tcttcttcggggagagcccgagcgggccgatcttgggcgccagggacgacgccgcgccga 656
||||||| || || || || || || ||||||||||| ||||| ||||| || || || |
Sbjct: 583 tcttcttgggcgatagacccagaggaccgatcttgggggccagagacgaagcagctccca 642
Query: 657 cctcgccgcccgtcacccggacgaagacctccaccacctgcgacgggtcgagcttgggcg 716
| ||||| || || |||| ||| | ||||| ||||| || || || || |||||||| |
Sbjct: 643 cttcgccccctgtgaccctcacgtacacctcgaccacttgggaaggatcaagcttgggag 702
Query: 717 gcatggc 723
|||||||
Sbjct: 703 gcatggc 709
>gb|CO367528.1|CO367528 RTK1_34_G11.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_34_G11_A029 5', mRNA sequence
Length = 825
Score = 93.7 bits (47), Expect = 1e-017
Identities = 242/307 (78%)
Strand = Plus / Minus
Query: 417 tgtgcttgatgttcttgaccttcttccggtccctctcgggctccttgagcgccttgatga 476
|||||||||||||||| |||||||| || |||||||||||||| ||||| || ||||
Sbjct: 388 tgtgcttgatgttcttcgtcttcttcctatctctctcgggctccttcagcgcttttatga 329
Query: 477 cgagcgcggcggcggaggggacgacggagaccttggcctggcggttctggacggtgagct 536
| || || || || || || || | |||||||||||| | |||||| ||||||||||
Sbjct: 328 ccagggcagcagcactcggcaccacagcgaccttggcctgcctgttctgaacggtgagct 269
Query: 537 tgacggtgacgcgcaggcccttccagtccttggccgtctccttggcgatgtcctcgccga 596
| || ||||| | || |||||||||||||| || || ||||| || ||||| || ||||
Sbjct: 268 ttaccgtgaccctcaaacccttccagtccttcgcagtttcctttgcaatgtcttctccga 209
Query: 597 tcttcttcggggagagcccgagcgggccgatcttgggcgccagggacgacgccgcgccga 656
||||||| || || || || || || ||||||||||| ||||| ||||| || || || |
Sbjct: 208 tcttcttgggcgatagacccagaggaccgatcttgggggccagagacgaagcagctccca 149
Query: 657 cctcgccgcccgtcacccggacgaagacctccaccacctgcgacgggtcgagcttgggcg 716
| ||||| || || |||| ||| | ||||| ||||| || || || || |||||||| |
Sbjct: 148 cttcgccccctgtgaccctcacgtacacctcgaccacttgggaaggatcaagcttgggag 89
Query: 717 gcatggc 723
|||||||
Sbjct: 88 gcatggc 82
>gb|CV147649.1|CV147649 EST858858 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone RPIE953 5' end, mRNA sequence
Length = 418
Score = 93.7 bits (47), Expect = 1e-017
Identities = 242/307 (78%)
Strand = Plus / Minus
Query: 417 tgtgcttgatgttcttgaccttcttccggtccctctcgggctccttgagcgccttgatga 476
||||||||||||| || |||||||| || |||||||||||||| ||||| || ||||
Sbjct: 387 tgtgcttgatgtttttcgtcttcttcctatctctctcgggctccttcagcgcttttatga 328
Query: 477 cgagcgcggcggcggaggggacgacggagaccttggcctggcggttctggacggtgagct 536
| || || || || || || || | |||||||||||| | |||||| ||||||||||
Sbjct: 327 ccagggcagcagcactcggcaccacagcgaccttggcctgcctgttctgaacggtgagct 268
Query: 537 tgacggtgacgcgcaggcccttccagtccttggccgtctccttggcgatgtcctcgccga 596
| || ||||| | || ||||||||||||||||| || ||||| || ||||| || ||||
Sbjct: 267 ttaccgtgaccctcaaacccttccagtccttggcagtttcctttgcaatgtcttctccga 208
Query: 597 tcttcttcggggagagcccgagcgggccgatcttgggcgccagggacgacgccgcgccga 656
||||||| || || || || || || ||||||||||| ||||| ||||| || || || |
Sbjct: 207 tcttcttgggcgatagacccagaggaccgatcttgggggccagagacgaagcagctccca 148
Query: 657 cctcgccgcccgtcacccggacgaagacctccaccacctgcgacgggtcgagcttgggcg 716
| ||||| || || |||| ||| | ||||| ||||| || || || || |||||||| |
Sbjct: 147 cttcgccccctgtgaccctcacgtacacctcgaccacttgggaaggatcaagcttgggag 88
Query: 717 gcatggc 723
|||||||
Sbjct: 87 gcatggc 81
>gb|DN460695.1|DN460695 EST956494 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone RPII149 5' end, mRNA sequence
Length = 733
Score = 93.7 bits (47), Expect = 1e-017
Identities = 242/307 (78%)
Strand = Plus / Minus
Query: 417 tgtgcttgatgttcttgaccttcttccggtccctctcgggctccttgagcgccttgatga 476
|||||||||||||||| |||||||| || |||||||||||||| ||||| || ||||
Sbjct: 315 tgtgcttgatgttcttcgtcttcttcctatctctctcgggctccttcagcgcttttatga 256
Query: 477 cgagcgcggcggcggaggggacgacggagaccttggcctggcggttctggacggtgagct 536
| || || || || || || || | |||||||||||| | |||||| ||||||||||
Sbjct: 255 ccagggcagcagcactcggcaccacagcgaccttggcctgcctgttctgaacggtgagct 196
Query: 537 tgacggtgacgcgcaggcccttccagtccttggccgtctccttggcgatgtcctcgccga 596
| || ||||| | || |||||||||||||| || || ||||| || ||||| || ||||
Sbjct: 195 ttaccgtgaccctcaaacccttccagtccttcgcagtttcctttgcaatgtcttctccga 136
Query: 597 tcttcttcggggagagcccgagcgggccgatcttgggcgccagggacgacgccgcgccga 656
||||||| || || || || || || ||||||||||| ||||| ||||| || || || |
Sbjct: 135 tcttcttgggcgatagacccagaggaccgatcttgggggccagagacgaagcagctccca 76
Query: 657 cctcgccgcccgtcacccggacgaagacctccaccacctgcgacgggtcgagcttgggcg 716
| ||||| || || |||| ||| | ||||| ||||| || || || || |||||||| |
Sbjct: 75 cttcgccccctgtgaccctcacgtacacctcgaccacttgggaaggatcaagcttgggag 16
Query: 717 gcatggc 723
|||||||
Sbjct: 15 gcatggc 9
>gb|DN462689.1|DN462689 EST958488 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone RPIIP51 5' end, mRNA sequence
Length = 596
Score = 93.7 bits (47), Expect = 1e-017
Identities = 242/307 (78%)
Strand = Plus / Minus
Query: 417 tgtgcttgatgttcttgaccttcttccggtccctctcgggctccttgagcgccttgatga 476
|||||||||||||||| |||||||| || |||||||||||||| ||||| || ||||
Sbjct: 403 tgtgcttgatgttcttcgtcttcttcctatctctctcgggctccttcagcgcttttatga 344
Query: 477 cgagcgcggcggcggaggggacgacggagaccttggcctggcggttctggacggtgagct 536
| || || || || || || || | |||||||||||| | |||||| ||||||||||
Sbjct: 343 ccagggcagcagcactcggcaccacagcgaccttggcctgcctgttctgaacggtgagct 284
Query: 537 tgacggtgacgcgcaggcccttccagtccttggccgtctccttggcgatgtcctcgccga 596
| || ||||| | || |||||||||||||| || || ||||| || ||||| || ||||
Sbjct: 283 ttaccgtgaccctcaaacccttccagtccttcgcagtttcctttgcaatgtcttctccga 224
Query: 597 tcttcttcggggagagcccgagcgggccgatcttgggcgccagggacgacgccgcgccga 656
||||||| || || || || || || ||||||||||| ||||| ||||| || || || |
Sbjct: 223 tcttcttgggcgatagacccagaggaccgatcttgggggccagagacgaagcagctccca 164
Query: 657 cctcgccgcccgtcacccggacgaagacctccaccacctgcgacgggtcgagcttgggcg 716
| ||||| || || |||| ||| | ||||| ||||| || || || || |||||||| |
Sbjct: 163 cttcgccccctgtgaccctcacgtacacctcgaccacttgggaaggatcaagcttgggag 104
Query: 717 gcatggc 723
|||||||
Sbjct: 103 gcatggc 97
>gb|DR025028.1|DR025028 STRS1_69_D08.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_69_D08_A034 3', mRNA sequence
Length = 828
Score = 93.7 bits (47), Expect = 1e-017
Identities = 242/307 (78%)
Strand = Plus / Plus
Query: 417 tgtgcttgatgttcttgaccttcttccggtccctctcgggctccttgagcgccttgatga 476
|||||||||||||||| |||||||| || |||||||||||||| ||||| || ||||
Sbjct: 431 tgtgcttgatgttcttcgtcttcttcctatctctctcgggctccttcagcgcttttatga 490
Query: 477 cgagcgcggcggcggaggggacgacggagaccttggcctggcggttctggacggtgagct 536
| || || || || || || || | |||||||||||| | |||||| ||||||||||
Sbjct: 491 ccagggcagcagcactcggcaccacagcgaccttggcctgcctgttctgaacggtgagct 550
Query: 537 tgacggtgacgcgcaggcccttccagtccttggccgtctccttggcgatgtcctcgccga 596
| || ||||| | || |||||||||||||| || || ||||| || ||||| || ||||
Sbjct: 551 ttaccgtgaccctcaaacccttccagtccttcgcagtttcctttgcaatgtcttctccga 610
Query: 597 tcttcttcggggagagcccgagcgggccgatcttgggcgccagggacgacgccgcgccga 656
||||||| || || || || || || ||||||||||| ||||| ||||| || || || |
Sbjct: 611 tcttcttgggcgatagacccagaggaccgatcttgggggccagagacgaagcagctccca 670
Query: 657 cctcgccgcccgtcacccggacgaagacctccaccacctgcgacgggtcgagcttgggcg 716
| ||||| || || |||| ||| | ||||| ||||| || || || || |||||||| |
Sbjct: 671 cttcgccccctgtgaccctcacgtacacctcgaccacttgggaaggatcaagcttgggag 730
Query: 717 gcatggc 723
|||||||
Sbjct: 731 gcatggc 737
>gb|DR025491.1|DR025491 STRS1_71_H12.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_71_H12_A034 5', mRNA sequence
Length = 762
Score = 93.7 bits (47), Expect = 1e-017
Identities = 242/307 (78%)
Strand = Plus / Minus
Query: 417 tgtgcttgatgttcttgaccttcttccggtccctctcgggctccttgagcgccttgatga 476
|||||||||||||||| |||||||| || |||||||||||||| ||||| || ||||
Sbjct: 325 tgtgcttgatgttcttcgtcttcttcctatctctctcgggctccttcagcgcttttatga 266
Query: 477 cgagcgcggcggcggaggggacgacggagaccttggcctggcggttctggacggtgagct 536
| || || || || || || || | |||||||||||| | |||||| ||||||||||
Sbjct: 265 ccagggcagcagcactcggcaccacagcgaccttggcctgcctgttctgaacggtgagct 206
Query: 537 tgacggtgacgcgcaggcccttccagtccttggccgtctccttggcgatgtcctcgccga 596
| || ||||| | || |||||||||||||| || || ||||| || ||||| || ||||
Sbjct: 205 ttaccgtgaccctcaaacccttccagtccttcgcagtttcctttgcaatgtcttctccga 146
Query: 597 tcttcttcggggagagcccgagcgggccgatcttgggcgccagggacgacgccgcgccga 656
||||||| || || || || || || ||||||||||| ||||| ||||| || || || |
Sbjct: 145 tcttcttgggcgatagacccagaggaccgatcttgggggccagagacgaagcagctccca 86
Query: 657 cctcgccgcccgtcacccggacgaagacctccaccacctgcgacgggtcgagcttgggcg 716
| ||||| || || |||| ||| | ||||| ||||| || || || || |||||||| |
Sbjct: 85 cttcgccccctgtgaccctcacgtacacctcgaccacttgggaaggatcaagcttgggag 26
Query: 717 gcatggc 723
|||||||
Sbjct: 25 gcatggc 19
Score = 38.2 bits (19), Expect = 0.49
Identities = 76/95 (80%)
Strand = Plus / Minus
Query: 269 tccttggggtccttgccgtcgacggtgcacccgacgctgacgcaggtgccgaggatctcc 328
|||||||| ||||| || || || ||||| |||||| || ||| || || || ||||||
Sbjct: 473 tccttgggatcctttccatccaccgtgcagccgacggagaggcatgtacccagaatctcc 414
Query: 329 ttgacggtgccggccaactccttggccatggacct 363
|| || | |||||||| ||||| |||||||||||
Sbjct: 413 ttcactgatccggccaattccttcgccatggacct 379
>gb|DR093099.1|DR093099 STRR1_6_B07.b1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_6_B07_A033 3', mRNA sequence
Length = 895
Score = 93.7 bits (47), Expect = 1e-017
Identities = 242/307 (78%)
Strand = Plus / Plus
Query: 417 tgtgcttgatgttcttgaccttcttccggtccctctcgggctccttgagcgccttgatga 476
|||||||||||||||| |||||||| || |||||||||||||| ||||| || ||||
Sbjct: 549 tgtgcttgatgttcttcgtcttcttcctatctctctcgggctccttcagcgcttttatga 608
Query: 477 cgagcgcggcggcggaggggacgacggagaccttggcctggcggttctggacggtgagct 536
| || || || || || || || | |||||||||||| | |||||| ||||||||||
Sbjct: 609 ccagggcagcagcactcggcaccacagcgaccttggcctgcctgttctgaacggtgagct 668
Query: 537 tgacggtgacgcgcaggcccttccagtccttggccgtctccttggcgatgtcctcgccga 596
| || ||||| | || |||||||||||||| || || ||||| || ||||| || ||||
Sbjct: 669 ttaccgtgaccctcaaacccttccagtccttcgcagtttcctttgcaatgtcttctccga 728
Query: 597 tcttcttcggggagagcccgagcgggccgatcttgggcgccagggacgacgccgcgccga 656
||||||| || || || || || || ||||||||||| ||||| ||||| || || || |
Sbjct: 729 tcttcttgggcgatagacccagaggaccgatcttgggggccagagacgaagcagctccca 788
Query: 657 cctcgccgcccgtcacccggacgaagacctccaccacctgcgacgggtcgagcttgggcg 716
| ||||| || || |||| ||| | ||||| ||||| || || || || |||||||| |
Sbjct: 789 cttcgccccctgtgaccctcacgtacacctcgaccacttgggaaggatcaagcttgggag 848
Query: 717 gcatggc 723
|||||||
Sbjct: 849 gcatggc 855
>gb|DR093169.1|DR093169 STRR1_6_B07.g1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_6_B07_A033 5', mRNA sequence
Length = 834
Score = 93.7 bits (47), Expect = 1e-017
Identities = 242/307 (78%)
Strand = Plus / Plus
Query: 417 tgtgcttgatgttcttgaccttcttccggtccctctcgggctccttgagcgccttgatga 476
|||||||||||||||| |||||||| || |||||||||||||| ||||| || ||||
Sbjct: 520 tgtgcttgatgttcttcgtcttcttcctatctctctcgggctccttcagcgcttttatga 579
Query: 477 cgagcgcggcggcggaggggacgacggagaccttggcctggcggttctggacggtgagct 536
| || || || || || || || | |||||||||||| | |||||| ||||||||||
Sbjct: 580 ccagggcagcagcactcggcaccacagcgaccttggcctgcctgttctgaacggtgagct 639
Query: 537 tgacggtgacgcgcaggcccttccagtccttggccgtctccttggcgatgtcctcgccga 596
| || ||||| | || |||||||||||||| || || ||||| || ||||| || ||||
Sbjct: 640 ttaccgtgaccctcaaacccttccagtccttcgcagtttcctttgcaatgtcttctccga 699
Query: 597 tcttcttcggggagagcccgagcgggccgatcttgggcgccagggacgacgccgcgccga 656
||||||| || || || || || || ||||||||||| ||||| ||||| || || || |
Sbjct: 700 tcttcttgggcgatagacccagaggaccgatcttgggggccagagacgaagcagctccca 759
Query: 657 cctcgccgcccgtcacccggacgaagacctccaccacctgcgacgggtcgagcttgggcg 716
| ||||| || || |||| ||| | ||||| ||||| || || || || |||||||| |
Sbjct: 760 cttcgccccctgtgaccctcacgtacacctcgaccacttgggaaggatcaagcttgggag 819
Query: 717 gcatggc 723
|||||||
Sbjct: 820 gcatggc 826
>gb|DR099634.1|DR099634 STRR1_57_B02.b1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_57_B02_A033 3', mRNA sequence
Length = 815
Score = 93.7 bits (47), Expect = 1e-017
Identities = 242/307 (78%)
Strand = Plus / Minus
Query: 417 tgtgcttgatgttcttgaccttcttccggtccctctcgggctccttgagcgccttgatga 476
|||||||||||||||| |||||||| || |||||||||||||| ||||| || ||||
Sbjct: 317 tgtgcttgatgttcttcgtcttcttcctatctctctcgggctccttcagcgcttttatga 258
Query: 477 cgagcgcggcggcggaggggacgacggagaccttggcctggcggttctggacggtgagct 536
| || || || || || || || | |||||||||||| | |||||| ||||||||||
Sbjct: 257 ccagggcagcagcactcggcaccacagcgaccttggcctgcctgttctgaacggtgagct 198
Query: 537 tgacggtgacgcgcaggcccttccagtccttggccgtctccttggcgatgtcctcgccga 596
| || ||||| | || |||||||||||||| || || ||||| || ||||| || ||||
Sbjct: 197 ttaccgtgaccctcaaacccttccagtccttcgcagtttcctttgcaatgtcttctccga 138
Query: 597 tcttcttcggggagagcccgagcgggccgatcttgggcgccagggacgacgccgcgccga 656
||||||| || || || || || || ||||||||||| ||||| ||||| || || || |
Sbjct: 137 tcttcttgggcgatagacccagaggaccgatcttgggggccagagacgaagcagctccca 78
Query: 657 cctcgccgcccgtcacccggacgaagacctccaccacctgcgacgggtcgagcttgggcg 716
| ||||| || || |||| ||| | ||||| ||||| || || || || |||||||| |
Sbjct: 77 cttcgccccctgtgaccctcacgtacacctcgaccacttgggaaggatcaagcttgggag 18
Query: 717 gcatggc 723
|||||||
Sbjct: 17 gcatggc 11
>gb|DR099694.1|DR099694 STRR1_57_B02.g1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_57_B02_A033 5', mRNA sequence
Length = 718
Score = 93.7 bits (47), Expect = 1e-017
Identities = 242/307 (78%)
Strand = Plus / Minus
Query: 417 tgtgcttgatgttcttgaccttcttccggtccctctcgggctccttgagcgccttgatga 476
|||||||||||||||| |||||||| || |||||||||||||| ||||| || ||||
Sbjct: 371 tgtgcttgatgttcttcgtcttcttcctatctctctcgggctccttcagcgcttttatga 312
Query: 477 cgagcgcggcggcggaggggacgacggagaccttggcctggcggttctggacggtgagct 536
| || || || || || || || | |||||||||||| | |||||| ||||||||||
Sbjct: 311 ccagggcagcagcactcggcaccacagcgaccttggcctgcctgttctgaacggtgagct 252
Query: 537 tgacggtgacgcgcaggcccttccagtccttggccgtctccttggcgatgtcctcgccga 596
| || ||||| | || |||||||||||||| || || ||||| || ||||| || ||||
Sbjct: 251 ttaccgtgaccctcaaacccttccagtccttcgcagtttcctttgcaatgtcttctccga 192
Query: 597 tcttcttcggggagagcccgagcgggccgatcttgggcgccagggacgacgccgcgccga 656
||||||| || || || || || || ||||||||||| ||||| ||||| || || || |
Sbjct: 191 tcttcttgggcgatagacccagaggaccgatcttgggggccagagacgaagcagctccca 132
Query: 657 cctcgccgcccgtcacccggacgaagacctccaccacctgcgacgggtcgagcttgggcg 716
| ||||| || || |||| ||| | ||||| ||||| || || || || |||||||| |
Sbjct: 131 cttcgccccctgtgaccctcacgtacacctcgaccacttgggaaggatcaagcttgggag 72
Query: 717 gcatggc 723
|||||||
Sbjct: 71 gcatggc 65
>gb|DR178936.1|DR178936 RTMNUT1_14_H08.g1_A029 Roots minus micronutrients Pinus taeda cDNA
clone RTMNUT1_14_H08_A029 5', mRNA sequence
Length = 743
Score = 93.7 bits (47), Expect = 1e-017
Identities = 242/307 (78%)
Strand = Plus / Minus
Query: 417 tgtgcttgatgttcttgaccttcttccggtccctctcgggctccttgagcgccttgatga 476
|||||||||||||||| |||||||| || |||||||||||||| ||||| || ||||
Sbjct: 398 tgtgcttgatgttcttcgtcttcttcctatctctctcgggctccttcagcgcttttatga 339
Query: 477 cgagcgcggcggcggaggggacgacggagaccttggcctggcggttctggacggtgagct 536
| || || || || || || || | |||||||||||| | |||||| ||||||||||
Sbjct: 338 ccagggcagcagcactcggcaccacagcgaccttggcctgcctgttctgaacggtgagct 279
Query: 537 tgacggtgacgcgcaggcccttccagtccttggccgtctccttggcgatgtcctcgccga 596
| || ||||| | || |||||||||||||| || || ||||| || ||||| || ||||
Sbjct: 278 ttaccgtgaccctcaaacccttccagtccttcgcagtttcctttgcaatgtcttctccga 219
Query: 597 tcttcttcggggagagcccgagcgggccgatcttgggcgccagggacgacgccgcgccga 656
||||||| || || || || || || ||||||||||| ||||| ||||| || || || |
Sbjct: 218 tcttcttgggcgatagacccagaggaccgatcttgggggccagagacgaagcagctccca 159
Query: 657 cctcgccgcccgtcacccggacgaagacctccaccacctgcgacgggtcgagcttgggcg 716
| ||||| || || |||| ||| | ||||| ||||| || || || || |||||||| |
Sbjct: 158 cttcgccccctgtgaccctcacgtacacctcgaccacttgggaaggatcaagcttgggag 99
Query: 717 gcatggc 723
|||||||
Sbjct: 98 gcatggc 92
>gb|DR180061.1|DR180061 RTMNUT1_26_E12.b1_A029 Roots minus micronutrients Pinus taeda cDNA
clone RTMNUT1_26_E12_A029 3', mRNA sequence
Length = 887
Score = 93.7 bits (47), Expect = 1e-017
Identities = 242/307 (78%)
Strand = Plus / Minus
Query: 417 tgtgcttgatgttcttgaccttcttccggtccctctcgggctccttgagcgccttgatga 476
|||||||||||||||| |||||||| || |||||||||||||| ||||| || ||||
Sbjct: 389 tgtgcttgatgttcttcgtcttcttcctatctctctcgggctccttcagcgcttttatga 330
Query: 477 cgagcgcggcggcggaggggacgacggagaccttggcctggcggttctggacggtgagct 536
| || || || || || || || | |||||||||||| | |||||| ||||||||||
Sbjct: 329 ccagggcagcagcactcggcaccacagcgaccttggcctgcctgttctgaacggtgagct 270
Query: 537 tgacggtgacgcgcaggcccttccagtccttggccgtctccttggcgatgtcctcgccga 596
| || ||||| | || |||||||||||||| || || ||||| || ||||| || ||||
Sbjct: 269 ttaccgtgaccctcaaacccttccagtccttcgcagtttcctttgcaatgtcttctccga 210
Query: 597 tcttcttcggggagagcccgagcgggccgatcttgggcgccagggacgacgccgcgccga 656
||||||| || || || || || || ||||||||||| ||||| ||||| || || || |
Sbjct: 209 tcttcttgggcgatagacccagaggaccgatcttgggggccagagacgaagcagctccca 150
Query: 657 cctcgccgcccgtcacccggacgaagacctccaccacctgcgacgggtcgagcttgggcg 716
| ||||| || || |||| ||| | ||||| ||||| || || || || |||||||| |
Sbjct: 149 cttcgccccctgtgaccctcacgtacacctcgaccacttgggaaggatcaagcttgggag 90
Query: 717 gcatggc 723
|||||||
Sbjct: 89 gcatggc 83
>gb|DR180143.1|DR180143 RTMNUT1_26_E12.g1_A029 Roots minus micronutrients Pinus taeda cDNA
clone RTMNUT1_26_E12_A029 5', mRNA sequence
Length = 776
Score = 93.7 bits (47), Expect = 1e-017
Identities = 242/307 (78%)
Strand = Plus / Minus
Query: 417 tgtgcttgatgttcttgaccttcttccggtccctctcgggctccttgagcgccttgatga 476
|||||||||||||||| |||||||| || |||||||||||||| ||||| || ||||
Sbjct: 391 tgtgcttgatgttcttcgtcttcttcctatctctctcgggctccttcagcgcttttatga 332
Query: 477 cgagcgcggcggcggaggggacgacggagaccttggcctggcggttctggacggtgagct 536
| || || || || || || || | |||||||||||| | |||||| ||||||||||
Sbjct: 331 ccagggcagcagcactcggcaccacagcgaccttggcctgcctgttctgaacggtgagct 272
Query: 537 tgacggtgacgcgcaggcccttccagtccttggccgtctccttggcgatgtcctcgccga 596
| || ||||| | || |||||||||||||| || || ||||| || ||||| || ||||
Sbjct: 271 ttaccgtgaccctcaaacccttccagtccttcgcagtttcctttgcaatgtcttctccga 212
Query: 597 tcttcttcggggagagcccgagcgggccgatcttgggcgccagggacgacgccgcgccga 656
||||||| || || || || || || ||||||||||| ||||| ||||| || || || |
Sbjct: 211 tcttcttgggcgatagacccagaggaccgatcttgggggccagagacgaagcagctccca 152
Query: 657 cctcgccgcccgtcacccggacgaagacctccaccacctgcgacgggtcgagcttgggcg 716
| ||||| || || |||| ||| | ||||| ||||| || || || || |||||||| |
Sbjct: 151 cttcgccccctgtgaccctcacgtacacctcgaccacttgggaaggatcaagcttgggag 92
Query: 717 gcatggc 723
|||||||
Sbjct: 91 gcatggc 85
>gb|CF400481.1|CF400481 RTWW1_5_F02.g1_A015 Well-watered loblolly pine roots WW1 Pinus
taeda cDNA clone RTWW1_5_F02_A015 5', mRNA sequence
Length = 717
Score = 89.7 bits (45), Expect = 1e-016
Identities = 183/229 (79%)
Strand = Plus / Minus
Query: 417 tgtgcttgatgttcttgaccttcttccggtccctctcgggctccttgagcgccttgatga 476
|||||||||||||||| |||||||| || |||||||||||||| ||||| || ||||
Sbjct: 285 tgtgcttgatgttcttcgtcttcttcctatctctctcgggctccttcagcgcttttatga 226
Query: 477 cgagcgcggcggcggaggggacgacggagaccttggcctggcggttctggacggtgagct 536
| || || || || || || || | |||||||||||| | |||||| ||||||||||
Sbjct: 225 ccagggcagcagcactcggcaccacagcgaccttggcctgcctgttctgaacggtgagct 166
Query: 537 tgacggtgacgcgcaggcccttccagtccttggccgtctccttggcgatgtcctcgccga 596
| || ||||| | || |||||||||||||| || || ||||| || ||||| || ||||
Sbjct: 165 ttaccgtgaccctcaaacccttccagtccttcgcagtttcctttgcaatgtcttctccga 106
Query: 597 tcttcttcggggagagcccgagcgggccgatcttgggcgccagggacga 645
||||||| || || || || || || ||||||||||| ||||| |||||
Sbjct: 105 tcttcttgggcgatagacccagaggaccgatcttgggggccagagacga 57
>gb|CF671997.1|CF671997 RTCNT1_60_D07.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_60_D07_A029 5', mRNA sequence
Length = 754
Score = 89.7 bits (45), Expect = 1e-016
Identities = 183/229 (79%)
Strand = Plus / Minus
Query: 417 tgtgcttgatgttcttgaccttcttccggtccctctcgggctccttgagcgccttgatga 476
|||||||||||||||| |||||||| || |||||||||||||| ||||| || ||||
Sbjct: 298 tgtgcttgatgttcttcgtcttcttcctatctctctcgggctccttcagcgcttttatga 239
Query: 477 cgagcgcggcggcggaggggacgacggagaccttggcctggcggttctggacggtgagct 536
| || || || || || || || | |||||||||||| | |||||| ||||||||||
Sbjct: 238 ccagggcagcagcactcggcaccacagcgaccttggcctgcctgttctgaacggtgagct 179
Query: 537 tgacggtgacgcgcaggcccttccagtccttggccgtctccttggcgatgtcctcgccga 596
| || ||||| | || |||||||||||||| || || ||||| || ||||| || ||||
Sbjct: 178 ttaccgtgaccctcaaacccttccagtccttcgcagtttcctttgcaatgtcttctccga 119
Query: 597 tcttcttcggggagagcccgagcgggccgatcttgggcgccagggacga 645
||||||| || || || || || || ||||||||||| ||||| |||||
Sbjct: 118 tcttcttgggcgatagacccagaggaccgatcttgggggccagagacga 70
>gb|DR016208.1|DR016208 STRS1_8_C03.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_8_C03_A034 5', mRNA sequence
Length = 858
Score = 89.7 bits (45), Expect = 1e-016
Identities = 183/229 (79%)
Strand = Plus / Minus
Query: 417 tgtgcttgatgttcttgaccttcttccggtccctctcgggctccttgagcgccttgatga 476
|||||||||||||||| |||||||| || |||||||||||||| ||||| || ||||
Sbjct: 334 tgtgcttgatgttcttcgtcttcttcctatctctctcgggctccttcagcgcttttatga 275
Query: 477 cgagcgcggcggcggaggggacgacggagaccttggcctggcggttctggacggtgagct 536
| || || || || || || || | |||||||||||| | |||||| ||||||||||
Sbjct: 274 ccagggcagcagcactcggcaccacagcgaccttggcctgcctgttctgaacggtgagct 215
Query: 537 tgacggtgacgcgcaggcccttccagtccttggccgtctccttggcgatgtcctcgccga 596
| || ||||| | || |||||||||||||| || || ||||| || ||||| || ||||
Sbjct: 214 ttaccgtgaccctcaaacccttccagtccttcgcagtttcctttgcaatgtcttctccga 155
Query: 597 tcttcttcggggagagcccgagcgggccgatcttgggcgccagggacga 645
||||||| || || || || || || ||||||||||| ||||| |||||
Sbjct: 154 tcttcttgggcgatagacccagaggaccgatcttgggggccagagacga 106
>gb|DR019892.1|DR019892 STRS1_33_E03.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_33_E03_A034 3', mRNA sequence
Length = 899
Score = 89.7 bits (45), Expect = 1e-016
Identities = 183/229 (79%)
Strand = Plus / Minus
Query: 417 tgtgcttgatgttcttgaccttcttccggtccctctcgggctccttgagcgccttgatga 476
|||||||||||||||| |||||||| || |||||||||||||| ||||| || ||||
Sbjct: 342 tgtgcttgatgttcttcgtcttcttcctatctctctcgggctccttcagcgcttttatga 283
Query: 477 cgagcgcggcggcggaggggacgacggagaccttggcctggcggttctggacggtgagct 536
| || || || || || || || | |||||||||||| | |||||| ||||||||||
Sbjct: 282 ccagggcagcagcactcggcaccacagcgaccttggcctgcctgttctgaacggtgagct 223
Query: 537 tgacggtgacgcgcaggcccttccagtccttggccgtctccttggcgatgtcctcgccga 596
| || ||||| | || |||||||||||||| || || ||||| || ||||| || ||||
Sbjct: 222 ttaccgtgaccctcaaacccttccagtccttcgcagtttcctttgcaatgtcttctccga 163
Query: 597 tcttcttcggggagagcccgagcgggccgatcttgggcgccagggacga 645
||||||| || || || || || || ||||||||||| ||||| |||||
Sbjct: 162 tcttcttgggcgatagacccagaggaccgatcttgggggccagagacga 114
>gb|DR021389.1|DR021389 STRS1_44_G08.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_44_G08_A034 3', mRNA sequence
Length = 829
Score = 89.7 bits (45), Expect = 1e-016
Identities = 183/229 (79%)
Strand = Plus / Plus
Query: 417 tgtgcttgatgttcttgaccttcttccggtccctctcgggctccttgagcgccttgatga 476
|||||||||||||||| |||||||| || |||||||||||||| ||||| || ||||
Sbjct: 579 tgtgcttgatgttcttcgtcttcttcctatctctctcgggctccttcagcgcttttatga 638
Query: 477 cgagcgcggcggcggaggggacgacggagaccttggcctggcggttctggacggtgagct 536
| || || || || || || || | |||||||||||| | |||||| ||||||||||
Sbjct: 639 ccagggcagcagcactcggcaccacagcgaccttggcctgcctgttctgaacggtgagct 698
Query: 537 tgacggtgacgcgcaggcccttccagtccttggccgtctccttggcgatgtcctcgccga 596
| || ||||| | || |||||||||||||| || || ||||| || ||||| || ||||
Sbjct: 699 ttaccgtgaccctcaaacccttccagtccttcgcagtttcctttgcaatgtcttctccga 758
Query: 597 tcttcttcggggagagcccgagcgggccgatcttgggcgccagggacga 645
||||||| || || || || || || ||||||||||| ||||| |||||
Sbjct: 759 tcttcttgggcgatagacccagaggaccgatcttgggggccagagacga 807
>gb|DR023572.1|DR023572 STRS1_58_C10.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_58_C10_A034 5', mRNA sequence
Length = 348
Score = 89.7 bits (45), Expect = 1e-016
Identities = 183/229 (79%)
Strand = Plus / Minus
Query: 417 tgtgcttgatgttcttgaccttcttccggtccctctcgggctccttgagcgccttgatga 476
|||||||||||||||| |||||||| || |||||||||||||| ||||| || ||||
Sbjct: 301 tgtgcttgatgttcttagtcttcttcctatctctctcgggctccttcagcgcttttatga 242
Query: 477 cgagcgcggcggcggaggggacgacggagaccttggcctggcggttctggacggtgagct 536
| || || || || || || || | |||||||||||| | |||||| ||||||||||
Sbjct: 241 ccagggcagcagcactcggcaccacagcgaccttggcctgcctgttctgaacggtgagct 182
Query: 537 tgacggtgacgcgcaggcccttccagtccttggccgtctccttggcgatgtcctcgccga 596
| || ||||| | || |||||||||||||| || || ||||| || ||||| || ||||
Sbjct: 181 ttaccgtgaccctcaaacccttccagtccttcgcagtttcctttgcaatgtcttctccga 122
Query: 597 tcttcttcggggagagcccgagcgggccgatcttgggcgccagggacga 645
||||||| || || || || || || ||||||||||| ||||| |||||
Sbjct: 121 tcttcttgggcgatagacccagaggaccgatcttgggggccagagacga 73
>gb|DR101560.1|DR101560 STRR1_74_E03.b1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_74_E03_A033 3', mRNA sequence
Length = 788
Score = 89.7 bits (45), Expect = 1e-016
Identities = 183/229 (79%)
Strand = Plus / Minus
Query: 417 tgtgcttgatgttcttgaccttcttccggtccctctcgggctccttgagcgccttgatga 476
|||||||||||||||| |||||||| || |||||||||||||| ||||| || ||||
Sbjct: 288 tgtgcttgatgttcttcgtcttcttcctatctctctcgggctccttcagcgcttttatga 229
Query: 477 cgagcgcggcggcggaggggacgacggagaccttggcctggcggttctggacggtgagct 536
| || || || || || || || | |||||||||||| | |||||| ||||||||||
Sbjct: 228 ccagggcagcagcactcggcaccacagcgaccttggcctgcctgttctgaacggtgagct 169
Query: 537 tgacggtgacgcgcaggcccttccagtccttggccgtctccttggcgatgtcctcgccga 596
| || ||||| | || |||||||||||||| || || ||||| || ||||| || ||||
Sbjct: 168 ttaccgtgaccctcaaacccttccagtccttcgcagtttcctttgcaatgtcttctccga 109
Query: 597 tcttcttcggggagagcccgagcgggccgatcttgggcgccagggacga 645
||||||| || || || || || || ||||||||||| ||||| |||||
Sbjct: 108 tcttcttgggcgatagacccagaggaccgatcttgggggccagagacga 60
>gb|DR101629.1|DR101629 STRR1_74_E03.g1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_74_E03_A033 5', mRNA sequence
Length = 579
Score = 89.7 bits (45), Expect = 1e-016
Identities = 183/229 (79%)
Strand = Plus / Minus
Query: 417 tgtgcttgatgttcttgaccttcttccggtccctctcgggctccttgagcgccttgatga 476
|||||||||||||||| |||||||| || |||||||||||||| ||||| || ||||
Sbjct: 336 tgtgcttgatgttcttcgtcttcttcctatctctctcgggctccttcagcgcttttatga 277
Query: 477 cgagcgcggcggcggaggggacgacggagaccttggcctggcggttctggacggtgagct 536
| || || || || || || || | |||||||||||| | |||||| ||||||||||
Sbjct: 276 ccagggcagcagcactcggcaccacagcgaccttggcctgcctgttctgaacggtgagct 217
Query: 537 tgacggtgacgcgcaggcccttccagtccttggccgtctccttggcgatgtcctcgccga 596
| || ||||| | || |||||||||||||| || || ||||| || ||||| || ||||
Sbjct: 216 ttaccgtgaccctcaaacccttccagtccttcgcagtttcctttgcaatgtcttctccga 157
Query: 597 tcttcttcggggagagcccgagcgggccgatcttgggcgccagggacga 645
||||||| || || || || || || ||||||||||| ||||| |||||
Sbjct: 156 tcttcttgggcgatagacccagaggaccgatcttgggggccagagacga 108
>gb|DR178852.1|DR178852 RTMNUT1_14_H08.b1_A029 Roots minus micronutrients Pinus taeda cDNA
clone RTMNUT1_14_H08_A029 3', mRNA sequence
Length = 772
Score = 89.7 bits (45), Expect = 1e-016
Identities = 183/229 (79%)
Strand = Plus / Minus
Query: 417 tgtgcttgatgttcttgaccttcttccggtccctctcgggctccttgagcgccttgatga 476
|||||||||||||||| |||||||| || |||||||||||||| ||||| || ||||
Sbjct: 282 tgtgcttgatgttcttcgtcttcttcctatctctctcgggctccttcagcgcttttatga 223
Query: 477 cgagcgcggcggcggaggggacgacggagaccttggcctggcggttctggacggtgagct 536
| || || || || || || || | |||||||||||| | |||||| ||||||||||
Sbjct: 222 ccagggcagcagcactcggcaccacagcgaccttggcctgcctgttctgaacggtgagct 163
Query: 537 tgacggtgacgcgcaggcccttccagtccttggccgtctccttggcgatgtcctcgccga 596
| || ||||| | || |||||||||||||| || || ||||| || ||||| || ||||
Sbjct: 162 ttaccgtgaccctcaaacccttccagtccttcgcagtttcctttgcaatgtcttctccga 103
Query: 597 tcttcttcggggagagcccgagcgggccgatcttgggcgccagggacga 645
||||||| || || || || || || ||||||||||| ||||| |||||
Sbjct: 102 tcttcttgggcgatagacccagaggaccgatcttgggggccagagacga 54
>gb|BE520104.1|BE520104 NXCI_016_H05_F NXCI (Nsf Xylem Compression wood Inclined) Pinus
taeda cDNA clone NXCI_016_H05 5' similar to Arabidopsis
thaliana sequence At5g60670 60S ribosomal protein L12 -
like see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 298
Score = 85.7 bits (43), Expect = 2e-015
Identities = 175/219 (79%)
Strand = Plus / Minus
Query: 505 gaccttggcctggcggttctggacggtgagcttgacggtgacgcgcaggcccttccagtc 564
|||||||||||| | |||||| ||||||||||| || ||||| | || |||||||||||
Sbjct: 263 gaccttggcctgcctgttctgaacggtgagctttaccgtgaccctcaaacccttccagtc 204
Query: 565 cttggccgtctccttggcgatgtcctcgccgatcttcttcggggagagcccgagcgggcc 624
||| || || ||||| || ||||| || ||||||||||| || || || || || || ||
Sbjct: 203 cttcgcagtttcctttgcaatgtcttctccgatcttcttgggcgatagacccagaggacc 144
Query: 625 gatcttgggcgccagggacgacgccgcgccgacctcgccgcccgtcacccggacgaagac 684
||||||||| ||||| ||||| || || || || ||||| || || |||| ||| | ||
Sbjct: 143 gatcttgggggccagagacgaagcagctcccacttcgccccctgtgaccctcacgtacac 84
Query: 685 ctccaccacctgcgacgggtcgagcttgggcggcatggc 723
||| ||||| || || || || |||||||| ||||||||
Sbjct: 83 ctcgaccacttgggaaggatcaagcttgggaggcatggc 45
>gb|BG275381.1|BG275381 NXSI_141_C02_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_141_C02 5' similar to Arabidopsis thaliana
sequence At5g60670 60S ribosomal protein L12 - like see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 509
Score = 85.7 bits (43), Expect = 2e-015
Identities = 241/307 (78%)
Strand = Plus / Minus
Query: 417 tgtgcttgatgttcttgaccttcttccggtccctctcgggctccttgagcgccttgatga 476
||||||||||||| || |||||||| || |||||||||||||| ||||| || ||||
Sbjct: 372 tgtgcttgatgtttttcgtcttcttcctatctctctcgggctccttcagcgcttttatga 313
Query: 477 cgagcgcggcggcggaggggacgacggagaccttggcctggcggttctggacggtgagct 536
| || || || || || || || | |||||||||||| | |||||| ||||||||||
Sbjct: 312 ccagggcagcagcactcggcaccacagcgaccttggcctgcctgttctgaacggtgagct 253
Query: 537 tgacggtgacgcgcaggcccttccagtccttggccgtctccttggcgatgtcctcgccga 596
| || ||||| | || |||||||||||||| || || ||||| || ||||| || ||||
Sbjct: 252 ttaccgtgaccctcaaacccttccagtccttcgcagtttcctttgcaatgtcttctccga 193
Query: 597 tcttcttcggggagagcccgagcgggccgatcttgggcgccagggacgacgccgcgccga 656
||||||| || || || || || || ||||||||||| ||||| ||||| || || || |
Sbjct: 192 tcttcttgggcgatagacccagaggaccgatcttgggggccagagacgaagcagctccca 133
Query: 657 cctcgccgcccgtcacccggacgaagacctccaccacctgcgacgggtcgagcttgggcg 716
| ||||| || || |||| ||| | ||||| ||||| || || || || |||||||| |
Sbjct: 132 cttcgccccctgtgaccctcacgtacacctcgaccacttgggaaggatcaagcttgggag 73
Query: 717 gcatggc 723
|||||||
Sbjct: 72 gcatggc 66
>gb|CF386306.1|CF386306 RTDR1_13_D11.g1_A015 Loblolly pine roots recovering from drought
DR1 Pinus taeda cDNA clone RTDR1_13_D11_A015 5', mRNA
sequence
Length = 805
Score = 85.7 bits (43), Expect = 2e-015
Identities = 241/307 (78%)
Strand = Plus / Minus
Query: 417 tgtgcttgatgttcttgaccttcttccggtccctctcgggctccttgagcgccttgatga 476
||||||||||||| || |||||||| || |||||||||||||| ||||| || ||||
Sbjct: 383 tgtgcttgatgtttttcgtcttcttcctatctctctcgggctccttcagcgcttttatga 324
Query: 477 cgagcgcggcggcggaggggacgacggagaccttggcctggcggttctggacggtgagct 536
| || || || || || || || | |||||||||||| | |||||| ||||||||||
Sbjct: 323 ccagggcagcagcactcggcaccacagcgaccttggcctgcctgttctgaacggtgagct 264
Query: 537 tgacggtgacgcgcaggcccttccagtccttggccgtctccttggcgatgtcctcgccga 596
| || ||||| | || |||||||||||||| || || ||||| || ||||| || ||||
Sbjct: 263 ttaccgtgaccctcaaacccttccagtccttcgcagtttcctttgcaatgtcttctccga 204
Query: 597 tcttcttcggggagagcccgagcgggccgatcttgggcgccagggacgacgccgcgccga 656
||||||| || || || || || || ||||||||||| ||||| ||||| || || || |
Sbjct: 203 tcttcttgggcgatagacccagaggaccgatcttgggggccagagacgaagcagctccca 144
Query: 657 cctcgccgcccgtcacccggacgaagacctccaccacctgcgacgggtcgagcttgggcg 716
| ||||| || || |||| ||| | ||||| ||||| || || || || |||||||| |
Sbjct: 143 cttcgccccctgtgaccctcacgtacacctcgaccacttgggaaggatcaagcttgggag 84
Query: 717 gcatggc 723
|||||||
Sbjct: 83 gcatggc 77
>gb|CF400303.1|CF400303 RTWW1_4_E12.g1_A015 Well-watered loblolly pine roots WW1 Pinus
taeda cDNA clone RTWW1_4_E12_A015 5', mRNA sequence
Length = 806
Score = 85.7 bits (43), Expect = 2e-015
Identities = 241/307 (78%)
Strand = Plus / Minus
Query: 417 tgtgcttgatgttcttgaccttcttccggtccctctcgggctccttgagcgccttgatga 476
||||||||||||| || |||||||| || |||||||||||||| ||||| || ||||
Sbjct: 350 tgtgcttgatgtttttcgtcttcttcctatctctctcgggctccttcagcgcttttatga 291
Query: 477 cgagcgcggcggcggaggggacgacggagaccttggcctggcggttctggacggtgagct 536
| || || || || || || || | |||||||||||| | |||||| ||||||||||
Sbjct: 290 ccagggcagcagcactcggcaccacagcgaccttggcctgcctgttctgaacggtgagct 231
Query: 537 tgacggtgacgcgcaggcccttccagtccttggccgtctccttggcgatgtcctcgccga 596
| || ||||| | || |||||||||||||| || || ||||| || ||||| || ||||
Sbjct: 230 ttaccgtgaccctcaaacccttccagtccttcgcagtttcctttgcaatgtcttctccga 171
Query: 597 tcttcttcggggagagcccgagcgggccgatcttgggcgccagggacgacgccgcgccga 656
||||||| || || || || || || ||||||||||| ||||| ||||| || || || |
Sbjct: 170 tcttcttgggcgatagacccagaggaccgatcttgggggccagagacgaagcagctccca 111
Query: 657 cctcgccgcccgtcacccggacgaagacctccaccacctgcgacgggtcgagcttgggcg 716
| ||||| || || |||| ||| | ||||| ||||| || || || || |||||||| |
Sbjct: 110 cttcgccccctgtgaccctcacgtacacctcgaccacttgggaaggatcaagcttgggag 51
Query: 717 gcatggc 723
|||||||
Sbjct: 50 gcatggc 44
>gb|CF400876.1|CF400876 RTWW1_8_B05.g1_A015 Well-watered loblolly pine roots WW1 Pinus
taeda cDNA clone RTWW1_8_B05_A015 5', mRNA sequence
Length = 663
Score = 85.7 bits (43), Expect = 2e-015
Identities = 241/307 (78%)
Strand = Plus / Minus
Query: 417 tgtgcttgatgttcttgaccttcttccggtccctctcgggctccttgagcgccttgatga 476
||||||||||||| || |||||||| || |||||||||||||| ||||| || ||||
Sbjct: 377 tgtgcttgatgtttttcgtcttcttcctatctctctcgggctccttcagcgcttttatga 318
Query: 477 cgagcgcggcggcggaggggacgacggagaccttggcctggcggttctggacggtgagct 536
| || || || || || || || | |||||||||||| | |||||| ||||||||||
Sbjct: 317 ccagggcagcagcactcggcaccacagcgaccttggcctgcctgttctgaacggtgagct 258
Query: 537 tgacggtgacgcgcaggcccttccagtccttggccgtctccttggcgatgtcctcgccga 596
| || ||||| | || |||||||||||||| || || ||||| || ||||| || ||||
Sbjct: 257 ttaccgtgaccctcaaacccttccagtccttcgcagtttcctttgcaatgtcttctccga 198
Query: 597 tcttcttcggggagagcccgagcgggccgatcttgggcgccagggacgacgccgcgccga 656
||||||| || || || || || || ||||||||||| ||||| ||||| || || || |
Sbjct: 197 tcttcttgggcgatagacccagaggaccgatcttgggggccagagacgaagcagctccca 138
Query: 657 cctcgccgcccgtcacccggacgaagacctccaccacctgcgacgggtcgagcttgggcg 716
| ||||| || || |||| ||| | ||||| ||||| || || || || |||||||| |
Sbjct: 137 cttcgccccctgtgaccctcacgtacacctcgaccacttgggaaggatcaagcttgggag 78
Query: 717 gcatggc 723
|||||||
Sbjct: 77 gcatggc 71
>gb|CF663680.1|CF663680 RTCNT1_4_B03.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_4_B03_A029 5', mRNA sequence
Length = 614
Score = 85.7 bits (43), Expect = 2e-015
Identities = 241/307 (78%)
Strand = Plus / Minus
Query: 417 tgtgcttgatgttcttgaccttcttccggtccctctcgggctccttgagcgccttgatga 476
||||||||||||| || |||||||| || |||||||||||||| ||||| || ||||
Sbjct: 354 tgtgcttgatgtttttcgtcttcttcctatctctctcgggctccttcagcgcttttatga 295
Query: 477 cgagcgcggcggcggaggggacgacggagaccttggcctggcggttctggacggtgagct 536
| || || || || || || || | |||||||||||| | |||||| ||||||||||
Sbjct: 294 ccagggcagcagcactcggcaccacagcgaccttggcctgcctgttctgaacggtgagct 235
Query: 537 tgacggtgacgcgcaggcccttccagtccttggccgtctccttggcgatgtcctcgccga 596
| || ||||| | || |||||||||||||| || || ||||| || ||||| || ||||
Sbjct: 234 ttaccgtgaccctcaaacccttccagtccttcgcagtttcctttgcaatgtcttctccga 175
Query: 597 tcttcttcggggagagcccgagcgggccgatcttgggcgccagggacgacgccgcgccga 656
||||||| || || || || || || ||||||||||| ||||| ||||| || || || |
Sbjct: 174 tcttcttgggcgatagacccagaggaccgatcttgggggccagagacgaagcagctccca 115
Query: 657 cctcgccgcccgtcacccggacgaagacctccaccacctgcgacgggtcgagcttgggcg 716
| ||||| || || |||| ||| | ||||| ||||| || || || || |||||||| |
Sbjct: 114 cttcgccccctgtgaccctcacgtacacctcgaccacttgggaaggatcaagcttgggag 55
Query: 717 gcatggc 723
|||||||
Sbjct: 54 gcatggc 48
>gb|CN783902.1|CN783902 EST782593 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone PIAAE68 5' end, mRNA sequence
Length = 831
Score = 85.7 bits (43), Expect = 2e-015
Identities = 241/307 (78%)
Strand = Plus / Minus
Query: 417 tgtgcttgatgttcttgaccttcttccggtccctctcgggctccttgagcgccttgatga 476
||||||||||||| || |||||||| || |||||||||||||| ||||| || ||||
Sbjct: 382 tgtgcttgatgtttttcgtcttcttcctatctctctcgggctccttcagcgcttttatga 323
Query: 477 cgagcgcggcggcggaggggacgacggagaccttggcctggcggttctggacggtgagct 536
| || || || || || || || | |||||||||||| | |||||| ||||||||||
Sbjct: 322 ccagggcagcagcactcggcaccacagcgaccttggcctgcctgttctgaacggtgagct 263
Query: 537 tgacggtgacgcgcaggcccttccagtccttggccgtctccttggcgatgtcctcgccga 596
| || ||||| | || |||||||||||||| || || ||||| || ||||| || ||||
Sbjct: 262 ttaccgtgaccctcaaacccttccagtccttcgcagtttcctttgcaatgtcttctccga 203
Query: 597 tcttcttcggggagagcccgagcgggccgatcttgggcgccagggacgacgccgcgccga 656
||||||| || || || || || || ||||||||||| ||||| ||||| || || || |
Sbjct: 202 tcttcttgggcgatagacccagaggaccgatcttgggggccagagacgaagcagctccca 143
Query: 657 cctcgccgcccgtcacccggacgaagacctccaccacctgcgacgggtcgagcttgggcg 716
| ||||| || || |||| ||| | ||||| ||||| || || || || |||||||| |
Sbjct: 142 cttcgccccctgtgaccctcacgtacacctcgaccacttgggaaggatcaagcttgggag 83
Query: 717 gcatggc 723
|||||||
Sbjct: 82 gcatggc 76
>gb|CO174224.1|CO174224 NDL1_42_D01.g1_A029 Needles control Pinus taeda cDNA clone
NDL1_42_D01_A029 5', mRNA sequence
Length = 777
Score = 85.7 bits (43), Expect = 2e-015
Identities = 241/307 (78%)
Strand = Plus / Minus
Query: 417 tgtgcttgatgttcttgaccttcttccggtccctctcgggctccttgagcgccttgatga 476
||||||||||||| || |||||||| || |||||||||||||| ||||| || ||||
Sbjct: 319 tgtgcttgatgtttttcgtcttcttcctatctctctcgggctccttcagcgcttttatga 260
Query: 477 cgagcgcggcggcggaggggacgacggagaccttggcctggcggttctggacggtgagct 536
| || || || || || || || | |||||||||||| | |||||| ||||||||||
Sbjct: 259 ccagggcagcagcactcggcaccacagcgaccttggcctgcctgttctgaacggtgagct 200
Query: 537 tgacggtgacgcgcaggcccttccagtccttggccgtctccttggcgatgtcctcgccga 596
| || ||||| | || |||||||||||||| || || ||||| || ||||| || ||||
Sbjct: 199 ttaccgtgaccctcaaacccttccagtccttcgcagtttcctttgcaatgtcttctccga 140
Query: 597 tcttcttcggggagagcccgagcgggccgatcttgggcgccagggacgacgccgcgccga 656
||||||| || || || || || || ||||||||||| ||||| ||||| || || || |
Sbjct: 139 tcttcttgggcgatagacccagaggaccgatcttgggggccagagacgaagcagctccca 80
Query: 657 cctcgccgcccgtcacccggacgaagacctccaccacctgcgacgggtcgagcttgggcg 716
| ||||| || || |||| ||| | ||||| ||||| || || || || |||||||| |
Sbjct: 79 cttcgccccctgtgaccctcacgtacacctcgaccacttgggaaggatcaagcttgggag 20
Query: 717 gcatggc 723
|||||||
Sbjct: 19 gcatggc 13
>gb|CO201181.1|CO201181 RTCNT2_4_D06.b1_A029 Root control 2 (late) Pinus taeda cDNA clone
RTCNT2_4_D06_A029 3', mRNA sequence
Length = 847
Score = 85.7 bits (43), Expect = 2e-015
Identities = 241/307 (78%)
Strand = Plus / Plus
Query: 417 tgtgcttgatgttcttgaccttcttccggtccctctcgggctccttgagcgccttgatga 476
||||||||||||| || |||||||| || |||||||||||||| ||||| || ||||
Sbjct: 456 tgtgcttgatgtttttcgtcttcttcctatctctctcgggctccttcagcgcttttatga 515
Query: 477 cgagcgcggcggcggaggggacgacggagaccttggcctggcggttctggacggtgagct 536
| || || || || || || || | |||||||||||| | |||||| ||||||||||
Sbjct: 516 ccagggcagcagcactcggcaccacagcgaccttggcctgcctgttctgaacggtgagct 575
Query: 537 tgacggtgacgcgcaggcccttccagtccttggccgtctccttggcgatgtcctcgccga 596
| || ||||| | || |||||||||||||| || || ||||| || ||||| || ||||
Sbjct: 576 ttaccgtgaccctcaaacccttccagtccttcgcagtttcctttgcaatgtcttctccga 635
Query: 597 tcttcttcggggagagcccgagcgggccgatcttgggcgccagggacgacgccgcgccga 656
||||||| || || || || || || ||||||||||| ||||| ||||| || || || |
Sbjct: 636 tcttcttgggcgatagacccagaggaccgatcttgggggccagagacgaagcagctccca 695
Query: 657 cctcgccgcccgtcacccggacgaagacctccaccacctgcgacgggtcgagcttgggcg 716
| ||||| || || |||| ||| | ||||| ||||| || || || || |||||||| |
Sbjct: 696 cttcgccccctgtgaccctcacgtacacctcgaccacttgggaaggatcaagcttgggag 755
Query: 717 gcatggc 723
|||||||
Sbjct: 756 gcatggc 762
>gb|CO411231.1|CO411231 EST841616 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone PIALH50 5' end, mRNA sequence
Length = 826
Score = 85.7 bits (43), Expect = 2e-015
Identities = 241/307 (78%)
Strand = Plus / Minus
Query: 417 tgtgcttgatgttcttgaccttcttccggtccctctcgggctccttgagcgccttgatga 476
|||||||||||||||| |||||||| || |||||||||||||| ||||| || ||||
Sbjct: 403 tgtgcttgatgttcttcgtcttcttcctatctctctcgggctccttcagcgcttttatga 344
Query: 477 cgagcgcggcggcggaggggacgacggagaccttggcctggcggttctggacggtgagct 536
| || || || || || || || | |||||||||||| | |||||| ||||||||||
Sbjct: 343 ccagggcagcagcactcggcaccacagcgaccttggcctgcctgttctgaacggtgagct 284
Query: 537 tgacggtgacgcgcaggcccttccagtccttggccgtctccttggcgatgtcctcgccga 596
| || ||||| | || |||||||||||||| || || || || || ||||| || ||||
Sbjct: 283 ttaccgtgaccctcaaacccttccagtccttcgcagtttcttttgcaatgtcttctccga 224
Query: 597 tcttcttcggggagagcccgagcgggccgatcttgggcgccagggacgacgccgcgccga 656
||||||| || || || || || || ||||||||||| ||||| ||||| || || || |
Sbjct: 223 tcttcttgggcgatagacccagaggaccgatcttgggggccagagacgaagcagctccca 164
Query: 657 cctcgccgcccgtcacccggacgaagacctccaccacctgcgacgggtcgagcttgggcg 716
| ||||| || || |||| ||| | ||||| ||||| || || || || |||||||| |
Sbjct: 163 cttcgccccctgtgaccctcacgtacacctcgaccacttgggaaggatcaagcttgggag 104
Query: 717 gcatggc 723
|||||||
Sbjct: 103 gcatggc 97
>gb|CO413491.1|CO413491 EST843876 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone PIAMB62 5' end, mRNA sequence
Length = 904
Score = 85.7 bits (43), Expect = 2e-015
Identities = 241/307 (78%)
Strand = Plus / Minus
Query: 417 tgtgcttgatgttcttgaccttcttccggtccctctcgggctccttgagcgccttgatga 476
|||||||||||||||| |||||||| || |||||||||||||| ||||| || ||||
Sbjct: 403 tgtgcttgatgttcttcgtcttcttcctatctctctcgggctccttcagcgcttttatga 344
Query: 477 cgagcgcggcggcggaggggacgacggagaccttggcctggcggttctggacggtgagct 536
| || || || || || || || | |||||||||||| | |||||| ||||||||||
Sbjct: 343 ccagggcagcagcactcggcaccacagcgaccttggcctgcctgttctgaacggtgagct 284
Query: 537 tgacggtgacgcgcaggcccttccagtccttggccgtctccttggcgatgtcctcgccga 596
| || ||||| | || |||||||||||||| || || || || || ||||| || ||||
Sbjct: 283 ttaccgtgaccctcaaacccttccagtccttcgcagtttcttttgcaatgtcttctccga 224
Query: 597 tcttcttcggggagagcccgagcgggccgatcttgggcgccagggacgacgccgcgccga 656
||||||| || || || || || || ||||||||||| ||||| ||||| || || || |
Sbjct: 223 tcttcttgggcgatagacccagaggaccgatcttgggggccagagacgaagcagctccca 164
Query: 657 cctcgccgcccgtcacccggacgaagacctccaccacctgcgacgggtcgagcttgggcg 716
| ||||| || || |||| ||| | ||||| ||||| || || || || |||||||| |
Sbjct: 163 cttcgccccctgtgaccctcacgtacacctcgaccacttgggaaggatcaagcttgggag 104
Query: 717 gcatggc 723
|||||||
Sbjct: 103 gcatggc 97
>gb|CO361282.1|CO361282 NDL2_3_H08.g1_A029 Needles control 2 Pinus taeda cDNA clone
NDL2_3_H08_A029 5', mRNA sequence
Length = 775
Score = 85.7 bits (43), Expect = 2e-015
Identities = 241/307 (78%)
Strand = Plus / Minus
Query: 417 tgtgcttgatgttcttgaccttcttccggtccctctcgggctccttgagcgccttgatga 476
||||||||||||| || |||||||| || |||||||||||||| ||||| || ||||
Sbjct: 326 tgtgcttgatgtttttcgtcttcttcctatctctctcgggctccttcagcgcttttatga 267
Query: 477 cgagcgcggcggcggaggggacgacggagaccttggcctggcggttctggacggtgagct 536
| || || || || || || || | |||||||||||| | |||||| ||||||||||
Sbjct: 266 ccagggcagcagcactcggcaccacagcgaccttggcctgcctgttctgaacggtgagct 207
Query: 537 tgacggtgacgcgcaggcccttccagtccttggccgtctccttggcgatgtcctcgccga 596
| || ||||| | || |||||||||||||| || || ||||| || ||||| || ||||
Sbjct: 206 ttaccgtgaccctcaaacccttccagtccttcgcagtttcctttgcaatgtcttctccga 147
Query: 597 tcttcttcggggagagcccgagcgggccgatcttgggcgccagggacgacgccgcgccga 656
||||||| || || || || || || ||||||||||| ||||| ||||| || || || |
Sbjct: 146 tcttcttgggcgatagacccagaggaccgatcttgggggccagagacgaagcagctccca 87
Query: 657 cctcgccgcccgtcacccggacgaagacctccaccacctgcgacgggtcgagcttgggcg 716
| ||||| || || |||| ||| | ||||| ||||| || || || || |||||||| |
Sbjct: 86 cttcgccccctgtgaccctcacgtacacctcgaccacttgggaaggatcaagcttgggag 27
Query: 717 gcatggc 723
|||||||
Sbjct: 26 gcatggc 20
>gb|CV133908.1|CV133908 EST845117 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone PIAGC51 5' end, mRNA sequence
Length = 742
Score = 85.7 bits (43), Expect = 2e-015
Identities = 241/307 (78%)
Strand = Plus / Minus
Query: 417 tgtgcttgatgttcttgaccttcttccggtccctctcgggctccttgagcgccttgatga 476
||||||||||||| || |||||||| || |||||||||||||| ||||| || ||||
Sbjct: 364 tgtgcttgatgtttttcgtcttcttcctatctctctcgggctccttcagcgcttttatga 305
Query: 477 cgagcgcggcggcggaggggacgacggagaccttggcctggcggttctggacggtgagct 536
| || || || || || || || | |||||||||||| | |||||| ||||||||||
Sbjct: 304 ccagggcagcagcactcggcaccacagcgaccttggcctgcctgttctgaacggtgagct 245
Query: 537 tgacggtgacgcgcaggcccttccagtccttggccgtctccttggcgatgtcctcgccga 596
| || ||||| | || |||||||||||||| || || ||||| || ||||| || ||||
Sbjct: 244 ttaccgtgaccctcaaacccttccagtccttcgcagtttcctttgcaatgtcttctccga 185
Query: 597 tcttcttcggggagagcccgagcgggccgatcttgggcgccagggacgacgccgcgccga 656
||||||| || || || || || || ||||||||||| ||||| ||||| || || || |
Sbjct: 184 tcttcttgggcgatagacccagaggaccgatcttgggggccagagacgaagcagctccca 125
Query: 657 cctcgccgcccgtcacccggacgaagacctccaccacctgcgacgggtcgagcttgggcg 716
| ||||| || || |||| ||| | ||||| ||||| || || || || |||||||| |
Sbjct: 124 cttcgccccctgtgaccctcacgtacacctcgaccacttgggaaggatcaagcttgggag 65
Query: 717 gcatggc 723
|||||||
Sbjct: 64 gcatggc 58
>gb|CV135319.1|CV135319 EST846528 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone PICMA51 5' end, mRNA sequence
Length = 779
Score = 85.7 bits (43), Expect = 2e-015
Identities = 241/307 (78%)
Strand = Plus / Minus
Query: 417 tgtgcttgatgttcttgaccttcttccggtccctctcgggctccttgagcgccttgatga 476
||||||||||||| || |||||||| || |||||||||||||| ||||| || ||||
Sbjct: 401 tgtgcttgatgtttttcgtcttcttcctatctctctcgggctccttcagcgcttttatga 342
Query: 477 cgagcgcggcggcggaggggacgacggagaccttggcctggcggttctggacggtgagct 536
| || || || || || || || | |||||||||||| | |||||| ||||||||||
Sbjct: 341 ccagggcagcagcactcggcaccacagcgaccttggcctgcctgttctgaacggtgagct 282
Query: 537 tgacggtgacgcgcaggcccttccagtccttggccgtctccttggcgatgtcctcgccga 596
| || ||||| | || |||||||||||||| || || ||||| || ||||| || ||||
Sbjct: 281 ttaccgtgaccctcaaacccttccagtccttcgcagtttcctttgcaatgtcttctccga 222
Query: 597 tcttcttcggggagagcccgagcgggccgatcttgggcgccagggacgacgccgcgccga 656
||||||| || || || || || || ||||||||||| ||||| ||||| || || || |
Sbjct: 221 tcttcttgggcgatagacccagaggaccgatcttgggggccagagacgaagcagctccca 162
Query: 657 cctcgccgcccgtcacccggacgaagacctccaccacctgcgacgggtcgagcttgggcg 716
| ||||| || || |||| ||| | ||||| ||||| || || || || |||||||| |
Sbjct: 161 cttcgccccctgtgaccctcacgtacacctcgaccacttgggaaggatcaagcttgggag 102
Query: 717 gcatggc 723
|||||||
Sbjct: 101 gcatggc 95
>gb|CV136622.1|CV136622 EST847831 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone RPIAE01 5' end, mRNA sequence
Length = 817
Score = 85.7 bits (43), Expect = 2e-015
Identities = 241/307 (78%)
Strand = Plus / Minus
Query: 417 tgtgcttgatgttcttgaccttcttccggtccctctcgggctccttgagcgccttgatga 476
||||||||||||| || |||||||| || |||||||||||||| ||||| || ||||
Sbjct: 356 tgtgcttgatgtttttcgtcttcttcctatctctctcgggctccttcagcgcttttatga 297
Query: 477 cgagcgcggcggcggaggggacgacggagaccttggcctggcggttctggacggtgagct 536
| || || || || || || || | |||||||||||| | |||||| ||||||||||
Sbjct: 296 ccagggcagcagcactcggcaccacagcgaccttggcctgcctgttctgaacggtgagct 237
Query: 537 tgacggtgacgcgcaggcccttccagtccttggccgtctccttggcgatgtcctcgccga 596
| || ||||| | || |||||||||||||| || || ||||| || ||||| || ||||
Sbjct: 236 ttaccgtgaccctcaaacccttccagtccttcgcagtttcctttgcaatgtcttctccga 177
Query: 597 tcttcttcggggagagcccgagcgggccgatcttgggcgccagggacgacgccgcgccga 656
||||||| || || || || || || ||||||||||| ||||| ||||| || || || |
Sbjct: 176 tcttcttgggcgatagacccagaggaccgatcttgggggccagagacgaagcagctccca 117
Query: 657 cctcgccgcccgtcacccggacgaagacctccaccacctgcgacgggtcgagcttgggcg 716
| ||||| || || |||| ||| | ||||| ||||| || || || || |||||||| |
Sbjct: 116 cttcgccccctgtgaccctcacgtacacctcgaccacttgggaaggatcaagcttgggag 57
Query: 717 gcatggc 723
|||||||
Sbjct: 56 gcatggc 50
>gb|CV137349.1|CV137349 EST848558 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone RPIAN30 5' end, mRNA sequence
Length = 854
Score = 85.7 bits (43), Expect = 2e-015
Identities = 241/307 (78%)
Strand = Plus / Minus
Query: 417 tgtgcttgatgttcttgaccttcttccggtccctctcgggctccttgagcgccttgatga 476
||||||||||||| || |||||||| || |||||||||||||| ||||| || ||||
Sbjct: 357 tgtgcttgatgtttttcgtcttcttcctatctctctcgggctccttcagcgcttttatga 298
Query: 477 cgagcgcggcggcggaggggacgacggagaccttggcctggcggttctggacggtgagct 536
| || || || || || || || | |||||||||||| | |||||| ||||||||||
Sbjct: 297 ccagggcagcagcactcggcaccacagcgaccttggcctgcctgttctgaacggtgagct 238
Query: 537 tgacggtgacgcgcaggcccttccagtccttggccgtctccttggcgatgtcctcgccga 596
| || ||||| | || |||||||||||||| || || ||||| || ||||| || ||||
Sbjct: 237 ttaccgtgaccctcaaacccttccagtccttcgcagtttcctttgcaatgtcttctccga 178
Query: 597 tcttcttcggggagagcccgagcgggccgatcttgggcgccagggacgacgccgcgccga 656
||||||| || || || || || || ||||||||||| ||||| ||||| || || || |
Sbjct: 177 tcttcttgggcgatagacccagaggaccgatcttgggggccagagacgaagcagctccca 118
Query: 657 cctcgccgcccgtcacccggacgaagacctccaccacctgcgacgggtcgagcttgggcg 716
| ||||| || || |||| ||| | ||||| ||||| || || || || |||||||| |
Sbjct: 117 cttcgccccctgtgaccctcacgtacacctcgaccacttgggaaggatcaagcttgggag 58
Query: 717 gcatggc 723
|||||||
Sbjct: 57 gcatggc 51
>gb|CV137492.1|CV137492 EST848701 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone RPIAP26 5' end, mRNA sequence
Length = 711
Score = 85.7 bits (43), Expect = 2e-015
Identities = 241/307 (78%)
Strand = Plus / Minus
Query: 417 tgtgcttgatgttcttgaccttcttccggtccctctcgggctccttgagcgccttgatga 476
||||||||||||| || |||||||| || |||||||||||||| ||||| || ||||
Sbjct: 403 tgtgcttgatgtttttcgtcttcttcctatctctctcgggctccttcagcgcttttatga 344
Query: 477 cgagcgcggcggcggaggggacgacggagaccttggcctggcggttctggacggtgagct 536
| || || || || || || || | |||||||||||| | |||||| ||||||||||
Sbjct: 343 ccagggcagcagcactcggcaccacagcgaccttggcctgcctgttctgaacggtgagct 284
Query: 537 tgacggtgacgcgcaggcccttccagtccttggccgtctccttggcgatgtcctcgccga 596
| || ||||| | || |||||||||||||| || || ||||| || ||||| || ||||
Sbjct: 283 ttaccgtgaccctcaaacccttccagtccttcgcagtttcctttgcaatgtcttctccga 224
Query: 597 tcttcttcggggagagcccgagcgggccgatcttgggcgccagggacgacgccgcgccga 656
||||||| || || || || || || ||||||||||| ||||| ||||| || || || |
Sbjct: 223 tcttcttgggcgatagacccagaggaccgatcttgggggccagagacgaagcagctccca 164
Query: 657 cctcgccgcccgtcacccggacgaagacctccaccacctgcgacgggtcgagcttgggcg 716
| ||||| || || |||| ||| | ||||| ||||| || || || || |||||||| |
Sbjct: 163 cttcgccccctgtgaccctcacgtacacctcgaccacttgggaaggatcaagcttgggag 104
Query: 717 gcatggc 723
|||||||
Sbjct: 103 gcatggc 97
>gb|CV137856.1|CV137856 EST849065 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone RPIAV46 5' end, mRNA sequence
Length = 778
Score = 85.7 bits (43), Expect = 2e-015
Identities = 241/307 (78%)
Strand = Plus / Minus
Query: 417 tgtgcttgatgttcttgaccttcttccggtccctctcgggctccttgagcgccttgatga 476
||||||||||||| || |||||||| || |||||||||||||| ||||| || ||||
Sbjct: 400 tgtgcttgatgtttttcgtcttcttcctatctctctcgggctccttcagcgcttttatga 341
Query: 477 cgagcgcggcggcggaggggacgacggagaccttggcctggcggttctggacggtgagct 536
| || || || || || || || | |||||||||||| | |||||| ||||||||||
Sbjct: 340 ccagggcagcagcactcggcaccacagcgaccttggcctgcctgttctgaacggtgagct 281
Query: 537 tgacggtgacgcgcaggcccttccagtccttggccgtctccttggcgatgtcctcgccga 596
| || ||||| | || |||||||||||||| || || ||||| || ||||| || ||||
Sbjct: 280 ttaccgtgaccctcaaacccttccagtccttcgcagtttcctttgcaatgtcttctccga 221
Query: 597 tcttcttcggggagagcccgagcgggccgatcttgggcgccagggacgacgccgcgccga 656
||||||| || || || || || || ||||||||||| ||||| ||||| || || || |
Sbjct: 220 tcttcttgggcgatagacccagaggaccgatcttgggggccagagacgaagcagctccca 161
Query: 657 cctcgccgcccgtcacccggacgaagacctccaccacctgcgacgggtcgagcttgggcg 716
| ||||| || || |||| ||| | ||||| ||||| || || || || |||||||| |
Sbjct: 160 cttcgccccctgtgaccctcacgtacacctcgaccacttgggaaggatcaagcttgggag 101
Query: 717 gcatggc 723
|||||||
Sbjct: 100 gcatggc 94
>gb|CV137973.1|CV137973 EST849182 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone RPIAX09 5' end, mRNA sequence
Length = 851
Score = 85.7 bits (43), Expect = 2e-015
Identities = 241/307 (78%)
Strand = Plus / Minus
Query: 417 tgtgcttgatgttcttgaccttcttccggtccctctcgggctccttgagcgccttgatga 476
||||||||||||| || |||||||| || |||||||||||||| ||||| || ||||
Sbjct: 389 tgtgcttgatgtttttcgtcttcttcctatctctctcgggctccttcagcgcttttatga 330
Query: 477 cgagcgcggcggcggaggggacgacggagaccttggcctggcggttctggacggtgagct 536
| || || || || || || || | |||||||||||| | |||||| ||||||||||
Sbjct: 329 ccagggcagcagcactcggcaccacagcgaccttggcctgcctgttctgaacggtgagct 270
Query: 537 tgacggtgacgcgcaggcccttccagtccttggccgtctccttggcgatgtcctcgccga 596
| || ||||| | || |||||||||||||| || || ||||| || ||||| || ||||
Sbjct: 269 ttaccgtgaccctcaaacccttccagtccttcgcagtttcctttgcaatgtcttctccga 210
Query: 597 tcttcttcggggagagcccgagcgggccgatcttgggcgccagggacgacgccgcgccga 656
||||||| || || || || || || ||||||||||| ||||| ||||| || || || |
Sbjct: 209 tcttcttgggcgatagacccagaggaccgatcttgggggccagagacgaagcagctccca 150
Query: 657 cctcgccgcccgtcacccggacgaagacctccaccacctgcgacgggtcgagcttgggcg 716
| ||||| || || |||| ||| | ||||| ||||| || || || || |||||||| |
Sbjct: 149 cttcgccccctgtgaccctcacgtacacctcgaccacttgggaaggatcaagcttgggag 90
Query: 717 gcatggc 723
|||||||
Sbjct: 89 gcatggc 83
>gb|CV138543.1|CV138543 EST849752 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone RPIB438 5' end, mRNA sequence
Length = 761
Score = 85.7 bits (43), Expect = 2e-015
Identities = 241/307 (78%)
Strand = Plus / Minus
Query: 417 tgtgcttgatgttcttgaccttcttccggtccctctcgggctccttgagcgccttgatga 476
||||||||||||| || |||||||| || |||||||||||||| ||||| || ||||
Sbjct: 403 tgtgcttgatgtttttcgtcttcttcctatctctctcgggctccttcagcgcttttatga 344
Query: 477 cgagcgcggcggcggaggggacgacggagaccttggcctggcggttctggacggtgagct 536
| || || || || || || || | |||||||||||| | |||||| ||||||||||
Sbjct: 343 ccagggcagcagcactcggcaccacagcgaccttggcctgcctgttctgaacggtgagct 284
Query: 537 tgacggtgacgcgcaggcccttccagtccttggccgtctccttggcgatgtcctcgccga 596
| || ||||| | || |||||||||||||| || || ||||| || ||||| || ||||
Sbjct: 283 ttaccgtgaccctcaaacccttccagtccttcgcagtttcctttgcaatgtcttctccga 224
Query: 597 tcttcttcggggagagcccgagcgggccgatcttgggcgccagggacgacgccgcgccga 656
||||||| || || || || || || ||||||||||| ||||| ||||| || || || |
Sbjct: 223 tcttcttgggcgatagacccagaggaccgatcttgggggccagagacgaagcagctccca 164
Query: 657 cctcgccgcccgtcacccggacgaagacctccaccacctgcgacgggtcgagcttgggcg 716
| ||||| || || |||| ||| | ||||| ||||| || || || || |||||||| |
Sbjct: 163 cttcgccccctgtgaccctcacgtacacctcgaccacttgggaaggatcaagcttgggag 104
Query: 717 gcatggc 723
|||||||
Sbjct: 103 gcatggc 97
>gb|CV138881.1|CV138881 EST850090 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone RPIB839 5' end, mRNA sequence
Length = 887
Score = 85.7 bits (43), Expect = 2e-015
Identities = 241/307 (78%)
Strand = Plus / Minus
Query: 417 tgtgcttgatgttcttgaccttcttccggtccctctcgggctccttgagcgccttgatga 476
||||||||||||| || |||||||| || |||||||||||||| ||||| || ||||
Sbjct: 403 tgtgcttgatgtttttcgtcttcttcctatctctctcgggctccttcagcgcttttatga 344
Query: 477 cgagcgcggcggcggaggggacgacggagaccttggcctggcggttctggacggtgagct 536
| || || || || || || || | |||||||||||| | |||||| ||||||||||
Sbjct: 343 ccagggcagcagcactcggcaccacagcgaccttggcctgcctgttctgaacggtgagct 284
Query: 537 tgacggtgacgcgcaggcccttccagtccttggccgtctccttggcgatgtcctcgccga 596
| || ||||| | || |||||||||||||| || || ||||| || ||||| || ||||
Sbjct: 283 ttaccgtgaccctcaaacccttccagtccttcgcagtttcctttgcaatgtcttctccga 224
Query: 597 tcttcttcggggagagcccgagcgggccgatcttgggcgccagggacgacgccgcgccga 656
||||||| || || || || || || ||||||||||| ||||| ||||| || || || |
Sbjct: 223 tcttcttgggcgatagacccagaggaccgatcttgggggccagagacgaagcagctccca 164
Query: 657 cctcgccgcccgtcacccggacgaagacctccaccacctgcgacgggtcgagcttgggcg 716
| ||||| || || |||| ||| | ||||| ||||| || || || || |||||||| |
Sbjct: 163 cttcgccccctgtgaccctcacgtacacctcgaccacttgggaaggatcaagcttgggag 104
Query: 717 gcatggc 723
|||||||
Sbjct: 103 gcatggc 97
>gb|CV139095.1|CV139095 EST850304 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone RPIBB30 5' end, mRNA sequence
Length = 914
Score = 85.7 bits (43), Expect = 2e-015
Identities = 241/307 (78%)
Strand = Plus / Minus
Query: 417 tgtgcttgatgttcttgaccttcttccggtccctctcgggctccttgagcgccttgatga 476
||||||||||||| || |||||||| || |||||||||||||| ||||| || ||||
Sbjct: 382 tgtgcttgatgtttttcgtcttcttcctatctctctcgggctccttcagcgcttttatga 323
Query: 477 cgagcgcggcggcggaggggacgacggagaccttggcctggcggttctggacggtgagct 536
| || || || || || || || | |||||||||||| | |||||| ||||||||||
Sbjct: 322 ccagggcagcagcactcggcaccacagcgaccttggcctgcctgttctgaacggtgagct 263
Query: 537 tgacggtgacgcgcaggcccttccagtccttggccgtctccttggcgatgtcctcgccga 596
| || ||||| | || |||||||||||||| || || ||||| || ||||| || ||||
Sbjct: 262 ttaccgtgaccctcaaacccttccagtccttcgcagtttcctttgcaatgtcttctccga 203
Query: 597 tcttcttcggggagagcccgagcgggccgatcttgggcgccagggacgacgccgcgccga 656
||||||| || || || || || || ||||||||||| ||||| ||||| || || || |
Sbjct: 202 tcttcttgggcgatagacccagaggaccgatcttgggggccagagacgaagcagctccca 143
Query: 657 cctcgccgcccgtcacccggacgaagacctccaccacctgcgacgggtcgagcttgggcg 716
| ||||| || || |||| ||| | ||||| ||||| || || || || |||||||| |
Sbjct: 142 cttcgccccctgtgaccctcacgtacacctcgaccacttgggaaggatcaagcttgggag 83
Query: 717 gcatggc 723
|||||||
Sbjct: 82 gcatggc 76
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 77,891
Number of Sequences: 355925
Number of extensions: 77891
Number of successful extensions: 23016
Number of sequences better than 0.5: 187
Number of HSP's better than 0.5 without gapping: 187
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 22326
Number of HSP's gapped (non-prelim): 658
length of query: 733
length of database: 217,277,237
effective HSP length: 19
effective length of query: 714
effective length of database: 210,514,662
effective search space: 150307468668
effective search space used: 150307468668
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)