BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 1804904.2.1
(690 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AA739764.1|AA739764 529 PtIFG2 Pinus taeda cDNA clone 88... 48 5e-004
gb|AA556860.1|AA556860 702 Loblolly pine C Pinus taeda cDNA... 48 5e-004
gb|AI784911.1|AI784911 1274 PtIFG2 Pinus taeda cDNA clone 9... 48 5e-004
gb|AI812834.1|AI812834 19H3 Pine Lambda Zap Xylem library P... 48 5e-004
gb|AL750924.1|AL750924 AL750924 RS Pinus pinaster cDNA clon... 48 5e-004
gb|AL751075.1|AL751075 AL751075 RS Pinus pinaster cDNA clon... 48 5e-004
gb|BX249075.1|BX249075 BX249075 Pinus pinaster differenciat... 48 5e-004
gb|BX249530.1|BX249530 BX249530 Pinus pinaster differenciat... 48 5e-004
gb|BX253410.1|BX253410 BX253410 Pinus pinaster differenciat... 48 5e-004
gb|BX253827.1|BX253827 BX253827 Pinus pinaster differenciat... 48 5e-004
gb|AW870058.1|AW870058 NXNV_123_E12_F Nsf Xylem Normal wood... 48 5e-004
gb|BE241224.1|BE241224 NXNV_180_G04_F Nsf Xylem Normal wood... 48 5e-004
gb|BE496277.1|BE496277 NXCI_022_B05_F NXCI (Nsf Xylem Compr... 48 5e-004
gb|BF609659.1|BF609659 NXSI_047_G06_F NXSI (Nsf Xylem Side ... 48 5e-004
gb|BF777299.1|BF777299 NXSI_067_E06_F NXSI (Nsf Xylem Side ... 48 5e-004
gb|BG040720.1|BG040720 NXSI_114_C09_F NXSI (Nsf Xylem Side ... 48 5e-004
gb|BG275750.1|BG275750 NXSI_145_E05_F NXSI (Nsf Xylem Side ... 48 5e-004
gb|BM492300.1|BM492300 NXRV_024_C12_F NXRV (Nsf Xylem Root ... 48 5e-004
gb|BQ633914.1|BQ633914 NXRV062_D05_F NXRV (Nsf Xylem Root w... 48 5e-004
gb|BQ703180.1|BQ703180 NXSI_137_E12_F NXSI (Nsf Xylem Side ... 48 5e-004
gb|CF472533.1|CF472533 RTDS1_10_E04.b1_A015 Drought-stresse... 48 5e-004
gb|CF472547.1|CF472547 RTDS1_10_E04.g1_A015 Drought-stresse... 48 5e-004
gb|CF476158.1|CF476158 RTWW2_21_H04.g1_A021 Well-watered lo... 48 5e-004
gb|CF667097.1|CF667097 RTCNT1_28_E02.b1_A029 Root control P... 48 5e-004
gb|CF667184.1|CF667184 RTCNT1_28_E02.g1_A029 Root control P... 48 5e-004
gb|CF669131.1|CF669131 RTCNT1_40_G09.g1_A029 Root control P... 48 5e-004
gb|CF670058.1|CF670058 RTCNT1_47_G09.g1_A029 Root control P... 48 5e-004
gb|BX680248.1|BX680248 BX680248 RS Pinus pinaster cDNA clon... 48 5e-004
gb|BX681751.1|BX681751 BX681751 RS Pinus pinaster cDNA clon... 48 5e-004
gb|BX681807.1|BX681807 BX681807 RS Pinus pinaster cDNA clon... 48 5e-004
gb|CR392154.1|CR392154 CR392154 RN Pinus pinaster cDNA clon... 48 5e-004
gb|CR392451.1|CR392451 CR392451 RN Pinus pinaster cDNA clon... 48 5e-004
gb|CO172808.1|CO172808 NDL1_32_B08.b1_A029 Needles control ... 48 5e-004
gb|CO172881.1|CO172881 NDL1_32_B08.g1_A029 Needles control ... 48 5e-004
gb|CX651979.1|CX651979 COLD1_56_D01.b1_A029 Root cold Pinus... 48 5e-004
gb|CX652049.1|CX652049 COLD1_56_D01.g1_A029 Root cold Pinus... 48 5e-004
gb|CX714815.1|CX714815 RTPQ1_27_E03.b1_A032 Roots treated w... 48 5e-004
gb|CX714867.1|CX714867 RTPQ1_27_E03.g1_A032 Roots treated w... 48 5e-004
gb|DR012095.1|DR012095 HEAT1_10_D11.b1_A029 Root at 37 C fo... 48 5e-004
gb|DR012165.1|DR012165 HEAT1_10_D11.g1_A029 Root at 37 C fo... 48 5e-004
gb|DR012421.1|DR012421 HEAT1_12_E11.g1_A029 Root at 37 C fo... 48 5e-004
gb|DR119433.1|DR119433 RTMG1_23_F01.b1_A029 Roots minus mag... 48 5e-004
gb|DR119514.1|DR119514 RTMG1_23_F01.g1_A029 Roots minus mag... 48 5e-004
gb|DR168863.1|DR168863 RTPHOS1_28_H04.b1_A029 Roots minus p... 48 5e-004
gb|DR689070.1|DR689070 EST1079156 Normalized pine embryo li... 48 5e-004
gb|DR742542.1|DR742542 RTCU1_4_G11.g1_A029 Roots plus added... 48 5e-004
gb|DT635114.1|DT635114 EST1150045 Normalized pine embryo li... 48 5e-004
gb|AI725054.1|AI725054 953 PtIFG2 Pinus taeda cDNA clone 88... 40 0.12
gb|CX651122.1|CX651122 COLD1_50_F09.b1_A029 Root cold Pinus... 40 0.12
gb|CX651192.1|CX651192 COLD1_50_F09.g1_A029 Root cold Pinus... 40 0.12
gb|AF143964.1|AF143964 Pinus taeda microsatellite PtTX2164 ... 40 0.12
gb|AF231798.1|AF231798 Pinus taeda clone LC14o12 microsatel... 40 0.12
gb|AF231799.1|AF231799 Pinus taeda clone G18a16 microsatell... 40 0.12
gb|AF286622.1| Pinus taeda clone PtTX4017 microsatellite se... 40 0.12
gb|AF440266.1| Pinus taeda microsatellite PtTX2013 sequence 40 0.12
gb|BX254201.1|BX254201 BX254201 Pinus pinaster differenciat... 38 0.46
gb|BG039583.1|BG039583 NXSI_100_F06_F NXSI (Nsf Xylem Side ... 38 0.46
gb|BG040817.1|BG040817 NXSI_115_D12_F NXSI (Nsf Xylem Side ... 38 0.46
gb|BG275270.1|BG275270 NXSI_138_F04_F NXSI (Nsf Xylem Side ... 38 0.46
gb|BQ290460.1|BQ290460 NXRV046_E07_F NXRV (Nsf Xylem Root w... 38 0.46
gb|BQ290949.1|BQ290949 NXRV051_G01_F NXRV (Nsf Xylem Root w... 38 0.46
gb|BQ698941.1|BQ698941 NXRV117_D04_F NXRV (Nsf Xylem Root w... 38 0.46
gb|BQ701629.1|BQ701629 NXSI_111_G08_F NXSI (Nsf Xylem Side ... 38 0.46
gb|BQ701872.1|BQ701872 NXSI_121_F01_F NXSI (Nsf Xylem Side ... 38 0.46
gb|BQ702611.1|BQ702611 NXSI_130_E08_F NXSI (Nsf Xylem Side ... 38 0.46
gb|CF396753.1|CF396753 RTDS2_24_C03.b1_A021 Drought-stresse... 38 0.46
gb|BX682672.1|BX682672 BX682672 Pinus pinaster differenciat... 38 0.46
gb|CR354638.1|CR354638 CR354638 Pinus pinaster differenciat... 38 0.46
gb|CR354740.1|CR354740 CR354740 Pinus pinaster differenciat... 38 0.46
gb|CO170906.1|CO170906 NDL1_17_F04.g1_A029 Needles control ... 38 0.46
gb|CO361684.1|CO361684 NDL2_6_H09.b1_A029 Needles control 2... 38 0.46
gb|CX714968.1|CX714968 RTPQ1_28_E12.g1_A032 Roots treated w... 38 0.46
gb|DR081240.1|DR081240 RTFEPL1_28_G08.b1_A029 Roots plus ad... 38 0.46
gb|DR096714.1|DR096714 STRR1_29_G01.g1_A033 Stem Response R... 38 0.46
gb|DR386241.1|DR386241 RTHG1_13_G06.g1_A029 Roots plus adde... 38 0.46
gb|DR687844.1|DR687844 EST1077927 Normalized pine embryo li... 38 0.46
gb|DT634364.1|DT634364 EST1149295 Normalized pine embryo li... 38 0.46
gb|AF231780.1|AF231780 Pinus taeda clone G18c15 microsatell... 38 0.46
gb|AF231791.1|AF231791 Pinus taeda clone LC6p11 microsatell... 38 0.46
gb|AF441502.1| Pinus taeda clone 57n9f microsatellite PtTX3... 38 0.46
>gb|AA739764.1|AA739764 529 PtIFG2 Pinus taeda cDNA clone 8848M 3', mRNA sequence
Length = 352
Score = 48.1 bits (24), Expect = 5e-004
Identities = 42/48 (87%)
Strand = Plus / Minus
Query: 208 caaatgaacttcaagcggctttccctgactgacatcaagattgacatt 255
||||||||||| || ||||||| ||||| || |||||||||||||||
Sbjct: 87 caaatgaactttaaaaggctttcactgacagatatcaagattgacatt 40
>gb|AA556860.1|AA556860 702 Loblolly pine C Pinus taeda cDNA clone 6C7E, mRNA sequence
Length = 589
Score = 48.1 bits (24), Expect = 5e-004
Identities = 42/48 (87%)
Strand = Plus / Plus
Query: 208 caaatgaacttcaagcggctttccctgactgacatcaagattgacatt 255
||||||||||| || ||||||| ||||| || |||||||||||||||
Sbjct: 234 caaatgaactttaaaaggctttcactgacagatatcaagattgacatt 281
>gb|AI784911.1|AI784911 1274 PtIFG2 Pinus taeda cDNA clone 9064r, mRNA sequence
Length = 661
Score = 48.1 bits (24), Expect = 5e-004
Identities = 42/48 (87%)
Strand = Plus / Plus
Query: 208 caaatgaacttcaagcggctttccctgactgacatcaagattgacatt 255
||||||||||| || ||||||| ||||| || |||||||||||||||
Sbjct: 3 caaatgaactttaaaaggctttcactgacagatatcaagattgacatt 50
>gb|AI812834.1|AI812834 19H3 Pine Lambda Zap Xylem library Pinus taeda cDNA, mRNA sequence
Length = 573
Score = 48.1 bits (24), Expect = 5e-004
Identities = 42/48 (87%)
Strand = Plus / Plus
Query: 208 caaatgaacttcaagcggctttccctgactgacatcaagattgacatt 255
||||||||||| || ||||||| ||||| || |||||||||||||||
Sbjct: 172 caaatgaactttaaaaggctttcactgacagatatcaagattgacatt 219
>gb|AL750924.1|AL750924 AL750924 RS Pinus pinaster cDNA clone RS02A09 similar to RP L14,
mRNA sequence
Length = 596
Score = 48.1 bits (24), Expect = 5e-004
Identities = 42/48 (87%)
Strand = Plus / Plus
Query: 208 caaatgaacttcaagcggctttccctgactgacatcaagattgacatt 255
||||||||||| || ||||||| ||||| || |||||||||||||||
Sbjct: 250 caaatgaactttaaaaggctttcactgacagatatcaagattgacatt 297
>gb|AL751075.1|AL751075 AL751075 RS Pinus pinaster cDNA clone RS03G08 similar to RP L14,
mRNA sequence
Length = 605
Score = 48.1 bits (24), Expect = 5e-004
Identities = 42/48 (87%)
Strand = Plus / Plus
Query: 208 caaatgaacttcaagcggctttccctgactgacatcaagattgacatt 255
||||||||||| || ||||||| ||||| || |||||||||||||||
Sbjct: 240 caaatgaactttaaaaggctttcactgacagatatcaagattgacatt 287
>gb|BX249075.1|BX249075 BX249075 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP015C05 similar to 60S RIBOSOMAL PROTEIN
L14, mRNA sequence
Length = 651
Score = 48.1 bits (24), Expect = 5e-004
Identities = 42/48 (87%)
Strand = Plus / Plus
Query: 208 caaatgaacttcaagcggctttccctgactgacatcaagattgacatt 255
||||||||||| || ||||||| ||||| || |||||||||||||||
Sbjct: 245 caaatgaactttaaaaggctttcactgacagatatcaagattgacatt 292
>gb|BX249530.1|BX249530 BX249530 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP025B05 similar to 60S RIBOSOMAL PROTEIN
L14, mRNA sequence
Length = 673
Score = 48.1 bits (24), Expect = 5e-004
Identities = 42/48 (87%)
Strand = Plus / Plus
Query: 208 caaatgaacttcaagcggctttccctgactgacatcaagattgacatt 255
||||||||||| || ||||||| ||||| || |||||||||||||||
Sbjct: 299 caaatgaactttaaaaggctttcactgacagatatcaagattgacatt 346
>gb|BX253410.1|BX253410 BX253410 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP083B09 similar to 60S RIBOSOMAL PROTEIN
L14, mRNA sequence
Length = 688
Score = 48.1 bits (24), Expect = 5e-004
Identities = 42/48 (87%)
Strand = Plus / Plus
Query: 208 caaatgaacttcaagcggctttccctgactgacatcaagattgacatt 255
||||||||||| || ||||||| ||||| || |||||||||||||||
Sbjct: 213 caaatgaactttaaaaggctttcactgacagatatcaagattgacatt 260
>gb|BX253827.1|BX253827 BX253827 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP089B08 similar to 60S RIBOSOMAL PROTEIN
L14, mRNA sequence
Length = 686
Score = 48.1 bits (24), Expect = 5e-004
Identities = 42/48 (87%)
Strand = Plus / Plus
Query: 208 caaatgaacttcaagcggctttccctgactgacatcaagattgacatt 255
||||||||||| || ||||||| ||||| || |||||||||||||||
Sbjct: 246 caaatgaactttaaaaggctttcactgacagatatcaagattgacatt 293
>gb|AW870058.1|AW870058 NXNV_123_E12_F Nsf Xylem Normal wood Vertical Pinus taeda cDNA
clone NXNV_123_E12 5' similar to Arabidopsis thaliana
sequence At4g27090 ribosomal protein L14 -like protein
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 384
Score = 48.1 bits (24), Expect = 5e-004
Identities = 42/48 (87%)
Strand = Plus / Plus
Query: 208 caaatgaacttcaagcggctttccctgactgacatcaagattgacatt 255
||||||||||| || ||||||| ||||| || |||||||||||||||
Sbjct: 146 caaatgaactttaaaaggctttcactgacagatatcaagattgacatt 193
>gb|BE241224.1|BE241224 NXNV_180_G04_F Nsf Xylem Normal wood Vertical Pinus taeda cDNA
clone NXNV_180_G04 5' similar to Arabidopsis thaliana
sequence At4g27090 ribosomal protein L14 -like protein
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 205
Score = 48.1 bits (24), Expect = 5e-004
Identities = 42/48 (87%)
Strand = Plus / Plus
Query: 208 caaatgaacttcaagcggctttccctgactgacatcaagattgacatt 255
||||||||||| || ||||||| ||||| || |||||||||||||||
Sbjct: 74 caaatgaactttaaaaggctttcactgacagatatcaagattgacatt 121
>gb|BE496277.1|BE496277 NXCI_022_B05_F NXCI (Nsf Xylem Compression wood Inclined) Pinus
taeda cDNA clone NXCI_022_B05 5' similar to Arabidopsis
thaliana sequence At4g27090 ribosomal protein L14 -like
protein see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 575
Score = 48.1 bits (24), Expect = 5e-004
Identities = 42/48 (87%)
Strand = Plus / Plus
Query: 208 caaatgaacttcaagcggctttccctgactgacatcaagattgacatt 255
||||||||||| || ||||||| ||||| || |||||||||||||||
Sbjct: 393 caaatgaactttaaaaggctttcactgacagatatcaagattgacatt 440
>gb|BF609659.1|BF609659 NXSI_047_G06_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_047_G06 5' similar to Arabidopsis thaliana
sequence At4g27090 ribosomal protein L14 -like protein
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 340
Score = 48.1 bits (24), Expect = 5e-004
Identities = 42/48 (87%)
Strand = Plus / Plus
Query: 208 caaatgaacttcaagcggctttccctgactgacatcaagattgacatt 255
||||||||||| || ||||||| ||||| || |||||||||||||||
Sbjct: 246 caaatgaactttaaaaggctttcactgacagatatcaagattgacatt 293
>gb|BF777299.1|BF777299 NXSI_067_E06_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_067_E06 5' similar to Arabidopsis thaliana
sequence At4g27090 ribosomal protein L14 -like protein
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 515
Score = 48.1 bits (24), Expect = 5e-004
Identities = 42/48 (87%)
Strand = Plus / Plus
Query: 208 caaatgaacttcaagcggctttccctgactgacatcaagattgacatt 255
||||||||||| || ||||||| ||||| || |||||||||||||||
Sbjct: 243 caaatgaactttaaaaggctttcactgacagatatcaagattgacatt 290
>gb|BG040720.1|BG040720 NXSI_114_C09_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_114_C09 5' similar to Arabidopsis thaliana
sequence At4g27090 ribosomal protein L14 -like protein
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 537
Score = 48.1 bits (24), Expect = 5e-004
Identities = 42/48 (87%)
Strand = Plus / Plus
Query: 208 caaatgaacttcaagcggctttccctgactgacatcaagattgacatt 255
||||||||||| || ||||||| ||||| || |||||||||||||||
Sbjct: 171 caaatgaactttaaaaggctttcactgacagatatcaagattgacatt 218
>gb|BG275750.1|BG275750 NXSI_145_E05_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_145_E05 5' similar to Arabidopsis thaliana
sequence At4g27090 ribosomal protein L14 -like protein
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 509
Score = 48.1 bits (24), Expect = 5e-004
Identities = 42/48 (87%)
Strand = Plus / Plus
Query: 208 caaatgaacttcaagcggctttccctgactgacatcaagattgacatt 255
||||||||||| || ||||||| ||||| || |||||||||||||||
Sbjct: 246 caaatgaactttaaaaggctttcactgacagatatcaagattgacatt 293
>gb|BM492300.1|BM492300 NXRV_024_C12_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV_024_C12 5' similar to Arabidopsis thaliana
sequence At2g20450 60S ribosomal protein L14 see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 538
Score = 48.1 bits (24), Expect = 5e-004
Identities = 42/48 (87%)
Strand = Plus / Plus
Query: 208 caaatgaacttcaagcggctttccctgactgacatcaagattgacatt 255
||||||||||| || ||||||| ||||| || |||||||||||||||
Sbjct: 308 caaatgaactttaaaaggctttcactgacagatatcaagattgacatt 355
>gb|BQ633914.1|BQ633914 NXRV062_D05_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV062_D05 5' similar to Arabidopsis thaliana
sequence At4g27090 ribosomal protein L14 -like protein
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 589
Score = 48.1 bits (24), Expect = 5e-004
Identities = 42/48 (87%)
Strand = Plus / Plus
Query: 208 caaatgaacttcaagcggctttccctgactgacatcaagattgacatt 255
||||||||||| || ||||||| ||||| || |||||||||||||||
Sbjct: 13 caaatgaactttaaaaggctttcactgacagatatcaagattgacatt 60
>gb|BQ703180.1|BQ703180 NXSI_137_E12_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_137_E12 5' similar to Arabidopsis thaliana
sequence At4g27090 ribosomal protein L14 -like protein
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 539
Score = 48.1 bits (24), Expect = 5e-004
Identities = 42/48 (87%)
Strand = Plus / Plus
Query: 208 caaatgaacttcaagcggctttccctgactgacatcaagattgacatt 255
||||||||||| || ||||||| ||||| || |||||||||||||||
Sbjct: 171 caaatgaactttaaaaggctttcactgacagatatcaagattgacatt 218
>gb|CF472533.1|CF472533 RTDS1_10_E04.b1_A015 Drought-stressed loblolly pine roots DS1 Pinus
taeda cDNA clone RTDS1_10_E04_A015 3', mRNA sequence
Length = 644
Score = 48.1 bits (24), Expect = 5e-004
Identities = 42/48 (87%)
Strand = Plus / Plus
Query: 208 caaatgaacttcaagcggctttccctgactgacatcaagattgacatt 255
||||||||||| || ||||||| ||||| || |||||||||||||||
Sbjct: 32 caaatgaactttaaaaggctttcactgacagatatcaagattgacatt 79
>gb|CF472547.1|CF472547 RTDS1_10_E04.g1_A015 Drought-stressed loblolly pine roots DS1 Pinus
taeda cDNA clone RTDS1_10_E04_A015 5', mRNA sequence
Length = 772
Score = 48.1 bits (24), Expect = 5e-004
Identities = 42/48 (87%)
Strand = Plus / Plus
Query: 208 caaatgaacttcaagcggctttccctgactgacatcaagattgacatt 255
||||||||||| || ||||||| ||||| || |||||||||||||||
Sbjct: 298 caaatgaactttaaaaggctttcactgacagatatcaagattgacatt 345
>gb|CF476158.1|CF476158 RTWW2_21_H04.g1_A021 Well-watered loblolly pine roots WW2 Pinus
taeda cDNA clone RTWW2_21_H04_A021 5', mRNA sequence
Length = 767
Score = 48.1 bits (24), Expect = 5e-004
Identities = 42/48 (87%)
Strand = Plus / Plus
Query: 208 caaatgaacttcaagcggctttccctgactgacatcaagattgacatt 255
||||||||||| || ||||||| ||||| || |||||||||||||||
Sbjct: 217 caaatgaactttaaaaggctttcactgacagatatcaagattgacatt 264
>gb|CF667097.1|CF667097 RTCNT1_28_E02.b1_A029 Root control Pinus taeda cDNA clone
RTCNT1_28_E02_A029 3', mRNA sequence
Length = 665
Score = 48.1 bits (24), Expect = 5e-004
Identities = 42/48 (87%)
Strand = Plus / Plus
Query: 208 caaatgaacttcaagcggctttccctgactgacatcaagattgacatt 255
||||||||||| || ||||||| ||||| || |||||||||||||||
Sbjct: 54 caaatgaactttaaaaggctttcactgacagatatcaagattgacatt 101
>gb|CF667184.1|CF667184 RTCNT1_28_E02.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_28_E02_A029 5', mRNA sequence
Length = 619
Score = 48.1 bits (24), Expect = 5e-004
Identities = 42/48 (87%)
Strand = Plus / Plus
Query: 208 caaatgaacttcaagcggctttccctgactgacatcaagattgacatt 255
||||||||||| || ||||||| ||||| || |||||||||||||||
Sbjct: 412 caaatgaactttaaaaggctttcactgacagatatcaagattgacatt 459
>gb|CF669131.1|CF669131 RTCNT1_40_G09.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_40_G09_A029 5', mRNA sequence
Length = 755
Score = 48.1 bits (24), Expect = 5e-004
Identities = 42/48 (87%)
Strand = Plus / Plus
Query: 208 caaatgaacttcaagcggctttccctgactgacatcaagattgacatt 255
||||||||||| || ||||||| ||||| || |||||||||||||||
Sbjct: 283 caaatgaactttaaaaggctttcactgacagatatcaagattgacatt 330
>gb|CF670058.1|CF670058 RTCNT1_47_G09.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_47_G09_A029 5', mRNA sequence
Length = 730
Score = 48.1 bits (24), Expect = 5e-004
Identities = 42/48 (87%)
Strand = Plus / Plus
Query: 208 caaatgaacttcaagcggctttccctgactgacatcaagattgacatt 255
||||||||||| || ||||||| ||||| || |||||||||||||||
Sbjct: 254 caaatgaactttaaaaggctttcactgacagatatcaagattgacatt 301
>gb|BX680248.1|BX680248 BX680248 RS Pinus pinaster cDNA clone RS41B10, mRNA sequence
Length = 616
Score = 48.1 bits (24), Expect = 5e-004
Identities = 42/48 (87%)
Strand = Plus / Plus
Query: 208 caaatgaacttcaagcggctttccctgactgacatcaagattgacatt 255
||||||||||| || ||||||| ||||| || |||||||||||||||
Sbjct: 138 caaatgaactttaaaaggctttcactgacagatatcaagattgacatt 185
>gb|BX681751.1|BX681751 BX681751 RS Pinus pinaster cDNA clone RS63H06, mRNA sequence
Length = 601
Score = 48.1 bits (24), Expect = 5e-004
Identities = 42/48 (87%)
Strand = Plus / Plus
Query: 208 caaatgaacttcaagcggctttccctgactgacatcaagattgacatt 255
||||||||||| || ||||||| ||||| || |||||||||||||||
Sbjct: 161 caaatgaactttaaaaggctttcactgacagatatcaagattgacatt 208
>gb|BX681807.1|BX681807 BX681807 RS Pinus pinaster cDNA clone RS65B08, mRNA sequence
Length = 522
Score = 48.1 bits (24), Expect = 5e-004
Identities = 42/48 (87%)
Strand = Plus / Plus
Query: 208 caaatgaacttcaagcggctttccctgactgacatcaagattgacatt 255
||||||||||| || ||||||| ||||| || |||||||||||||||
Sbjct: 246 caaatgaactttaaaaggctttcactgacagatatcaagattgacatt 293
>gb|CR392154.1|CR392154 CR392154 RN Pinus pinaster cDNA clone RN27C03, mRNA sequence
Length = 483
Score = 48.1 bits (24), Expect = 5e-004
Identities = 42/48 (87%)
Strand = Plus / Plus
Query: 208 caaatgaacttcaagcggctttccctgactgacatcaagattgacatt 255
||||||||||| || ||||||| ||||| || |||||||||||||||
Sbjct: 248 caaatgaactttaaaaggctttcactgacagatatcaagattgacatt 295
>gb|CR392451.1|CR392451 CR392451 RN Pinus pinaster cDNA clone RN32C02, mRNA sequence
Length = 537
Score = 48.1 bits (24), Expect = 5e-004
Identities = 42/48 (87%)
Strand = Plus / Plus
Query: 208 caaatgaacttcaagcggctttccctgactgacatcaagattgacatt 255
||||||||||| || ||||||| ||||| || |||||||||||||||
Sbjct: 250 caaatgaactttaaaaggctttcactgacagatatcaagattgacatt 297
>gb|CO172808.1|CO172808 NDL1_32_B08.b1_A029 Needles control Pinus taeda cDNA clone
NDL1_32_B08_A029 3', mRNA sequence
Length = 722
Score = 48.1 bits (24), Expect = 5e-004
Identities = 42/48 (87%)
Strand = Plus / Plus
Query: 208 caaatgaacttcaagcggctttccctgactgacatcaagattgacatt 255
||||||||||| || ||||||| ||||| || |||||||||||||||
Sbjct: 54 caaatgaactttaaaaggctttcactgacagatatcaagattgacatt 101
>gb|CO172881.1|CO172881 NDL1_32_B08.g1_A029 Needles control Pinus taeda cDNA clone
NDL1_32_B08_A029 5', mRNA sequence
Length = 767
Score = 48.1 bits (24), Expect = 5e-004
Identities = 42/48 (87%)
Strand = Plus / Plus
Query: 208 caaatgaacttcaagcggctttccctgactgacatcaagattgacatt 255
||||||||||| || ||||||| ||||| || |||||||||||||||
Sbjct: 129 caaatgaactttaaaaggctttcactgacagatatcaagattgacatt 176
>gb|CX651979.1|CX651979 COLD1_56_D01.b1_A029 Root cold Pinus taeda cDNA clone
COLD1_56_D01_A029 3', mRNA sequence
Length = 693
Score = 48.1 bits (24), Expect = 5e-004
Identities = 42/48 (87%)
Strand = Plus / Minus
Query: 208 caaatgaacttcaagcggctttccctgactgacatcaagattgacatt 255
||||||||||| || ||||||| ||||| || |||||||||||||||
Sbjct: 434 caaatgaactttaaaaggctttcactgacagatatcaagattgacatt 387
>gb|CX652049.1|CX652049 COLD1_56_D01.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_56_D01_A029 5', mRNA sequence
Length = 762
Score = 48.1 bits (24), Expect = 5e-004
Identities = 42/48 (87%)
Strand = Plus / Minus
Query: 208 caaatgaacttcaagcggctttccctgactgacatcaagattgacatt 255
||||||||||| || ||||||| ||||| || |||||||||||||||
Sbjct: 516 caaatgaactttaaaaggctttcactgacagatatcaagattgacatt 469
>gb|CX714815.1|CX714815 RTPQ1_27_E03.b1_A032 Roots treated with paraquat Pinus taeda cDNA
clone RTPQ1_27_E03_A032 3', mRNA sequence
Length = 618
Score = 48.1 bits (24), Expect = 5e-004
Identities = 42/48 (87%)
Strand = Plus / Plus
Query: 208 caaatgaacttcaagcggctttccctgactgacatcaagattgacatt 255
||||||||||| || ||||||| ||||| || |||||||||||||||
Sbjct: 76 caaatgaactttaaaaggctttcactgacagatatcaagattgacatt 123
>gb|CX714867.1|CX714867 RTPQ1_27_E03.g1_A032 Roots treated with paraquat Pinus taeda cDNA
clone RTPQ1_27_E03_A032 5', mRNA sequence
Length = 427
Score = 48.1 bits (24), Expect = 5e-004
Identities = 42/48 (87%)
Strand = Plus / Plus
Query: 208 caaatgaacttcaagcggctttccctgactgacatcaagattgacatt 255
||||||||||| || ||||||| ||||| || |||||||||||||||
Sbjct: 200 caaatgaactttaaaaggctttcactgacagatatcaagattgacatt 247
>gb|DR012095.1|DR012095 HEAT1_10_D11.b1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_10_D11_A029 3', mRNA sequence
Length = 617
Score = 48.1 bits (24), Expect = 5e-004
Identities = 42/48 (87%)
Strand = Plus / Plus
Query: 208 caaatgaacttcaagcggctttccctgactgacatcaagattgacatt 255
||||||||||| || ||||||| ||||| || |||||||||||||||
Sbjct: 67 caaatgaactttaaaaggctttcactgacagatatcaagattgacatt 114
>gb|DR012165.1|DR012165 HEAT1_10_D11.g1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_10_D11_A029 5', mRNA sequence
Length = 775
Score = 48.1 bits (24), Expect = 5e-004
Identities = 42/48 (87%)
Strand = Plus / Plus
Query: 208 caaatgaacttcaagcggctttccctgactgacatcaagattgacatt 255
||||||||||| || ||||||| ||||| || |||||||||||||||
Sbjct: 378 caaatgaactttaaaaggctttcactgacagatatcaagattgacatt 425
>gb|DR012421.1|DR012421 HEAT1_12_E11.g1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_12_E11_A029 5', mRNA sequence
Length = 472
Score = 48.1 bits (24), Expect = 5e-004
Identities = 42/48 (87%)
Strand = Plus / Plus
Query: 208 caaatgaacttcaagcggctttccctgactgacatcaagattgacatt 255
||||||||||| || ||||||| ||||| || |||||||||||||||
Sbjct: 334 caaatgaactttaaaaggctttcactgacagatatcaagattgacatt 381
>gb|DR119433.1|DR119433 RTMG1_23_F01.b1_A029 Roots minus magnesium Pinus taeda cDNA clone
RTMG1_23_F01_A029 3', mRNA sequence
Length = 762
Score = 48.1 bits (24), Expect = 5e-004
Identities = 42/48 (87%)
Strand = Plus / Plus
Query: 208 caaatgaacttcaagcggctttccctgactgacatcaagattgacatt 255
||||||||||| || ||||||| ||||| || |||||||||||||||
Sbjct: 192 caaatgaactttaaaaggctttcactgacagatatcaagattgacatt 239
>gb|DR119514.1|DR119514 RTMG1_23_F01.g1_A029 Roots minus magnesium Pinus taeda cDNA clone
RTMG1_23_F01_A029 5', mRNA sequence
Length = 770
Score = 48.1 bits (24), Expect = 5e-004
Identities = 42/48 (87%)
Strand = Plus / Plus
Query: 208 caaatgaacttcaagcggctttccctgactgacatcaagattgacatt 255
||||||||||| || ||||||| ||||| || |||||||||||||||
Sbjct: 260 caaatgaactttaaaaggctttcactgacagatatcaagattgacatt 307
>gb|DR168863.1|DR168863 RTPHOS1_28_H04.b1_A029 Roots minus phosphorous Pinus taeda cDNA
clone RTPHOS1_28_H04_A029 3', mRNA sequence
Length = 579
Score = 48.1 bits (24), Expect = 5e-004
Identities = 42/48 (87%)
Strand = Plus / Plus
Query: 208 caaatgaacttcaagcggctttccctgactgacatcaagattgacatt 255
||||||||||| || ||||||| ||||| || |||||||||||||||
Sbjct: 55 caaatgaactttaaaaggctttcactgacagatatcaagattgacatt 102
>gb|DR689070.1|DR689070 EST1079156 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWACD83 3' end, mRNA sequence
Length = 832
Score = 48.1 bits (24), Expect = 5e-004
Identities = 42/48 (87%)
Strand = Plus / Plus
Query: 208 caaatgaacttcaagcggctttccctgactgacatcaagattgacatt 255
||||||||||| || ||||||| ||||| || |||||||||||||||
Sbjct: 614 caaatgaactttaaaaggctttcactgacagatatcaagattgacatt 661
>gb|DR742542.1|DR742542 RTCU1_4_G11.g1_A029 Roots plus added copper Pinus taeda cDNA clone
RTCU1_4_G11_A029 5', mRNA sequence
Length = 806
Score = 48.1 bits (24), Expect = 5e-004
Identities = 42/48 (87%)
Strand = Plus / Minus
Query: 208 caaatgaacttcaagcggctttccctgactgacatcaagattgacatt 255
||||||||||| || ||||||| ||||| || |||||||||||||||
Sbjct: 576 caaatgaactttaaaaggctttcactgacagatatcaagattgacatt 529
>gb|DT635114.1|DT635114 EST1150045 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMGD33 3' end, mRNA sequence
Length = 836
Score = 48.1 bits (24), Expect = 5e-004
Identities = 42/48 (87%)
Strand = Plus / Plus
Query: 208 caaatgaacttcaagcggctttccctgactgacatcaagattgacatt 255
||||||||||| || ||||||| ||||| || |||||||||||||||
Sbjct: 622 caaatgaactttaaaaggctttcactgacagatatcaagattgacatt 669
>gb|AI725054.1|AI725054 953 PtIFG2 Pinus taeda cDNA clone 8848r, mRNA sequence
Length = 628
Score = 40.1 bits (20), Expect = 0.12
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 224 ggctttccctgactgacatcaagattgacatt 255
||||||| ||||| || |||||||||||||||
Sbjct: 513 ggctttcactgacagatatcaagattgacatt 482
>gb|CX651122.1|CX651122 COLD1_50_F09.b1_A029 Root cold Pinus taeda cDNA clone
COLD1_50_F09_A029 3', mRNA sequence
Length = 419
Score = 40.1 bits (20), Expect = 0.12
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 140 tcgtcgtcatcgtcgacgtcgtcg 163
||||||||||||||| ||||||||
Sbjct: 118 tcgtcgtcatcgtcgtcgtcgtcg 95
>gb|CX651192.1|CX651192 COLD1_50_F09.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_50_F09_A029 5', mRNA sequence
Length = 412
Score = 40.1 bits (20), Expect = 0.12
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 140 tcgtcgtcatcgtcgacgtcgtcg 163
||||||||||||||| ||||||||
Sbjct: 89 tcgtcgtcatcgtcgtcgtcgtcg 66
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 91,421
Number of Sequences: 355925
Number of extensions: 91421
Number of successful extensions: 24930
Number of sequences better than 0.5: 83
Number of HSP's better than 0.5 without gapping: 83
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 24745
Number of HSP's gapped (non-prelim): 185
length of query: 690
length of database: 217,277,237
effective HSP length: 19
effective length of query: 671
effective length of database: 210,514,662
effective search space: 141255338202
effective search space used: 141255338202
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)