BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 1738931.2.11
(609 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BX248801.1|BX248801 BX248801 Pinus pinaster differenciat... 113 9e-024
gb|BX682977.1|BX682977 BX682977 Pinus pinaster differenciat... 113 9e-024
gb|BX255474.1|BX255474 BX255474 Pinus pinaster differenciat... 105 2e-021
gb|DN463160.1|DN463160 EST958959 Sequencing ESTs from loblo... 105 2e-021
gb|DR014632.1|DR014632 HEAT1_50_D12.g1_A029 Root at 37 C fo... 105 2e-021
gb|BM492255.1|BM492255 NXRV_022_G09_F NXRV (Nsf Xylem Root ... 92 3e-017
gb|AW981841.1|AW981841 PC19D01 Pine TriplEx pollen cone lib... 88 5e-016
gb|AI812340.1|AI812340 1B8 Pine Lambda Zap Xylem library Pi... 86 2e-015
gb|AW754514.1|AW754514 PC03A08 Pine TriplEx pollen cone lib... 86 2e-015
gb|BX254425.1|BX254425 BX254425 Pinus pinaster differenciat... 86 2e-015
gb|BE496396.1|BE496396 NXCI_017_D02_F NXCI (Nsf Xylem Compr... 86 2e-015
gb|BF186007.1|BF186007 NXCI_132_A08_F NXCI (Nsf Xylem Compr... 86 2e-015
gb|BG275938.1|BG275938 NXSI_149_G06_F NXSI (Nsf Xylem Side ... 86 2e-015
gb|CF472413.1|CF472413 RTDS1_9_D01.g1_A015 Drought-stressed... 86 2e-015
gb|BX682787.1|BX682787 BX682787 Pinus pinaster differenciat... 86 2e-015
gb|CV136524.1|CV136524 EST847733 Sequencing ESTs from loblo... 86 2e-015
gb|DR024781.1|DR024781 STRS1_67_A05.g1_A034 Shoot tip pitch... 86 2e-015
gb|DR058464.1|DR058464 RTNIT1_12_A03.b1_A029 Roots minus ni... 86 2e-015
gb|DR058537.1|DR058537 RTNIT1_12_A03.g1_A029 Roots minus ni... 86 2e-015
gb|DR060182.1|DR060182 RTNIT1_26_F03.b1_A029 Roots minus ni... 86 2e-015
gb|DR060260.1|DR060260 RTNIT1_26_F03.g1_A029 Roots minus ni... 86 2e-015
gb|DR091869.1|DR091869 RTAL1_24_B09.g1_A029 Roots plus adde... 86 2e-015
gb|DR096237.1|DR096237 STRR1_26_E02.g1_A033 Stem Response R... 86 2e-015
gb|DR112225.1|DR112225 RTS1_26_E09.g1_A029 Roots minus sulf... 86 2e-015
gb|DT626264.1|DT626264 EST1158188 Sequencing ESTs from lobl... 86 2e-015
gb|DR024706.1|DR024706 STRS1_67_A05.b1_A034 Shoot tip pitch... 84 8e-015
gb|DN462478.1|DN462478 EST958277 Sequencing ESTs from loblo... 82 3e-014
gb|DT626951.1|DT626951 EST1160027 Sequencing ESTs from lobl... 82 3e-014
gb|BF778182.1|BF778182 NXSI_080_B02_F NXSI (Nsf Xylem Side ... 80 1e-013
gb|AW225661.1|AW225661 ST70A05 Pine TriplEx shoot tip libra... 78 5e-013
gb|AL750025.1|AL750025 AL750025 AS Pinus pinaster cDNA clon... 78 5e-013
gb|BX681005.1|BX681005 BX681005 RS Pinus pinaster cDNA clon... 78 5e-013
gb|CO174718.1|CO174718 NDL1_45_G04.g1_A029 Needles control ... 78 5e-013
gb|AW755231.1|AW755231 PC12F10 Pine TriplEx pollen cone lib... 76 2e-012
gb|AL749630.1|AL749630 AL749630 AN Pinus pinaster cDNA clon... 74 7e-012
gb|BE643878.1|BE643878 NXCI_048_E02_F NXCI (Nsf Xylem Compr... 72 3e-011
gb|CO172573.1|CO172573 NDL1_30_C03.g1_A029 Needles control ... 66 2e-009
gb|DR014550.1|DR014550 HEAT1_50_D12.b1_A029 Root at 37 C fo... 58 4e-007
gb|BX252371.1|BX252371 BX252371 Pinus pinaster differenciat... 52 3e-005
gb|CF395700.1|CF395700 RTDS2_16_C07.g1_A021 Drought-stresse... 50 1e-004
gb|AA556149.1|AA556149 4 Loblolly pine N Pinus taeda cDNA c... 46 0.002
gb|CF472338.1|CF472338 RTDS1_9_D01.b1_A015 Drought-stressed... 46 0.002
gb|BF517995.1|BF517995 NXSI_032_F08_F NXSI (Nsf Xylem Side ... 44 0.007
gb|BG275981.1|BG275981 NXSI_147_C11_F NXSI (Nsf Xylem Side ... 44 0.007
gb|DR745593.1|DR745593 RTCU1_30_F08.g1_A029 Roots plus adde... 42 0.026
gb|AW755158.1|AW755158 PC11F09 Pine TriplEx pollen cone lib... 38 0.41
gb|CO174639.1|CO174639 NDL1_45_G04.b1_A029 Needles control ... 38 0.41
>gb|BX248801.1|BX248801 BX248801 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP001C02 similar to RIBOSOMAL PROTEIN L31,
mRNA sequence
Length = 695
Score = 113 bits (57), Expect = 9e-024
Identities = 126/149 (84%)
Strand = Plus / Plus
Query: 95 gaggtggtcaccagggagtacaccatcaacctccacaagcgcctccacggctgcacattc 154
|||||||| || |||||||||||||||||||| |||| ||||||||| |||||||| ||
Sbjct: 50 gaggtggtaacaagggagtacaccatcaaccttcacaggcgcctccatggctgcacgttt 109
Query: 155 aagaagaaggcacccaacgccatcaaggagatcaggaagtttgcacagaaggccatgggc 214
||||| | ||| || || ||| | |||||||||||||| ||||| |||||||| |||||
Sbjct: 110 aagaaaatggctccaaaggccgttaaggagatcaggaaatttgcccagaaggctatggga 169
Query: 215 accacggacgtcaggatcgatgtgaagct 243
||||| || || ||| | |||||||||||
Sbjct: 170 accaccgatgtgaggctggatgtgaagct 198
>gb|BX682977.1|BX682977 BX682977 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone 126C12 similar to 60S ribosomal protein L31,
mRNA sequence
Length = 665
Score = 113 bits (57), Expect = 9e-024
Identities = 126/149 (84%)
Strand = Plus / Plus
Query: 95 gaggtggtcaccagggagtacaccatcaacctccacaagcgcctccacggctgcacattc 154
|||||||| || |||||||||||||||||||| |||| ||||||||| |||||||| ||
Sbjct: 24 gaggtggtaacaagggagtacaccatcaaccttcacaggcgcctccatggctgcacgttt 83
Query: 155 aagaagaaggcacccaacgccatcaaggagatcaggaagtttgcacagaaggccatgggc 214
||||| | ||| || || ||| | |||||||||||||| ||||| |||||||| |||||
Sbjct: 84 aagaaaatggctccaaaggccgttaaggagatcaggaaatttgcccagaaggctatggga 143
Query: 215 accacggacgtcaggatcgatgtgaagct 243
||||| || || ||| | |||||||||||
Sbjct: 144 accaccgatgtgaggctggatgtgaagct 172
>gb|BX255474.1|BX255474 BX255474 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP006B12 similar to 60S RIBOSOMAL PROTEIN
L31, mRNA sequence
Length = 648
Score = 105 bits (53), Expect = 2e-021
Identities = 125/149 (83%)
Strand = Plus / Plus
Query: 95 gaggtggtcaccagggagtacaccatcaacctccacaagcgcctccacggctgcacattc 154
|||||||| || ||||||||||||||||| || |||| ||||||||| |||||||| ||
Sbjct: 76 gaggtggtaacaagggagtacaccatcaatcttcacaggcgcctccatggctgcacgttt 135
Query: 155 aagaagaaggcacccaacgccatcaaggagatcaggaagtttgcacagaaggccatgggc 214
||||| | ||| || || ||| | |||||||||||||| ||||| |||||||| |||||
Sbjct: 136 aagaaaatggctccaaaggccgttaaggagatcaggaaatttgcccagaaggctatggga 195
Query: 215 accacggacgtcaggatcgatgtgaagct 243
||||| || || ||| | |||||||||||
Sbjct: 196 accaccgatgtgaggctggatgtgaagct 224
>gb|DN463160.1|DN463160 EST958959 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone RPIIV35 5' end, mRNA sequence
Length = 738
Score = 105 bits (53), Expect = 2e-021
Identities = 125/149 (83%)
Strand = Plus / Plus
Query: 95 gaggtggtcaccagggagtacaccatcaacctccacaagcgcctccacggctgcacattc 154
|||||||| || ||||||||||||||||| || |||| ||||||||| |||||||| ||
Sbjct: 84 gaggtggtaacaagggagtacaccatcaatcttcacaggcgcctccatggctgcacgttt 143
Query: 155 aagaagaaggcacccaacgccatcaaggagatcaggaagtttgcacagaaggccatgggc 214
||||| | ||| || || ||| | |||||||||||||| ||||| |||||||| |||||
Sbjct: 144 aagaaaatggctccaaaggccgttaaggagatcaggaaatttgcccagaaggctatggga 203
Query: 215 accacggacgtcaggatcgatgtgaagct 243
||||| || || ||| | |||||||||||
Sbjct: 204 accaccgatgtgaggctggatgtgaagct 232
>gb|DR014632.1|DR014632 HEAT1_50_D12.g1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_50_D12_A029 5', mRNA sequence
Length = 846
Score = 105 bits (53), Expect = 2e-021
Identities = 125/149 (83%)
Strand = Plus / Plus
Query: 95 gaggtggtcaccagggagtacaccatcaacctccacaagcgcctccacggctgcacattc 154
|||||||| || ||||||||||||||||| || |||| ||||||||| |||||||| ||
Sbjct: 73 gaggtggtaacaagggagtacaccatcaatcttcacaggcgcctccatggctgcacgttt 132
Query: 155 aagaagaaggcacccaacgccatcaaggagatcaggaagtttgcacagaaggccatgggc 214
||||| | ||| || || ||| | |||||||||||||| ||||| |||||||| |||||
Sbjct: 133 aagaaaatggctccaaaggccgttaaggagatcaggaaatttgcccagaaggctatggga 192
Query: 215 accacggacgtcaggatcgatgtgaagct 243
||||| || || ||| | |||||||||||
Sbjct: 193 accaccgatgtgaggctggatgtgaagct 221
>gb|BM492255.1|BM492255 NXRV_022_G09_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV_022_G09 5' similar to Arabidopsis thaliana
sequence At2g19740 60S ribosomal protein L31 see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 223
Score = 91.7 bits (46), Expect = 3e-017
Identities = 121/147 (82%)
Strand = Plus / Plus
Query: 95 gaggtggtcaccagggagtacaccatcaacctccacaagcgcctccacggctgcacattc 154
|||||||| || ||||||||||||||||| || |||| ||||||||| |||||||| ||
Sbjct: 71 gaggtggtaacaagggagtacaccatcaatcttcacaggcgcctccatggctgcacgttt 130
Query: 155 aagaagaaggcacccaacgccatcaaggagatcaggaagtttgcacagaaggccatgggc 214
||||| | ||| || || ||| | |||||||||||||| ||||| |||| || |||||
Sbjct: 131 aagaaaatggctccaaaggccgttaaggagatcaggaaatttgcccaganngctatggga 190
Query: 215 accacggacgtcaggatcgatgtgaag 241
||||| || || ||| | |||||||||
Sbjct: 191 accaccgatgtnaggctggatgtgaag 217
>gb|AW981841.1|AW981841 PC19D01 Pine TriplEx pollen cone library Pinus taeda cDNA clone
PC19D01, mRNA sequence
Length = 471
Score = 87.7 bits (44), Expect = 5e-016
Identities = 128/156 (82%)
Strand = Plus / Plus
Query: 95 gaggtggtcaccagggagtacaccatcaacctccacaagcgcctccacggctgcacattc 154
||||| || ||||||||||||||||| || || |||||||| ||||| |||||||| ||
Sbjct: 101 gaggtcgtgaccagggagtacaccattaatcttcacaagcgtctccatggctgcacgttt 160
Query: 155 aagaagaaggcacccaacgccatcaaggagatcaggaagtttgcacagaaggccatgggc 214
||||| | ||| || || ||| | |||||||||||||| ||||| |||||||| |||||
Sbjct: 161 aagaaaatggctccaaaggccgttaaggagatcaggaaatttgcccagaaggctatggga 220
Query: 215 accacggacgtcaggatcgatgtgaagctcaacaag 250
||| | || || ||| |||| ||||| || ||||||
Sbjct: 221 accgctgatgtgaggctcgacgtgaaacttaacaag 256
>gb|AI812340.1|AI812340 1B8 Pine Lambda Zap Xylem library Pinus taeda cDNA, mRNA sequence
Length = 519
Score = 85.7 bits (43), Expect = 2e-015
Identities = 100/119 (84%)
Strand = Plus / Plus
Query: 95 gaggtggtcaccagggagtacaccatcaacctccacaagcgcctccacggctgcacattc 154
||||| || ||||||||||||||||| || || |||||||| ||||| |||||||| ||
Sbjct: 85 gaggtcgtgaccagggagtacaccattaatcttcacaagcgtctccatggctgcacgttt 144
Query: 155 aagaagaaggcacccaacgccatcaaggagatcaggaagtttgcacagaaggccatggg 213
||||| | ||| || || ||| | |||||||||||||| ||||| |||||||| |||||
Sbjct: 145 aagaaaatggctccaaaggccgttaaggagatcaggaaatttgcccagaaggctatggg 203
>gb|AW754514.1|AW754514 PC03A08 Pine TriplEx pollen cone library Pinus taeda cDNA clone
PC03A08, mRNA sequence
Length = 498
Score = 85.7 bits (43), Expect = 2e-015
Identities = 100/119 (84%)
Strand = Plus / Plus
Query: 95 gaggtggtcaccagggagtacaccatcaacctccacaagcgcctccacggctgcacattc 154
||||| || ||||||||||||||||| || || |||||||| ||||| |||||||| ||
Sbjct: 124 gaggtcgtgaccagggagtacaccattaatcttcacaagcgtctccatggctgcacgttt 183
Query: 155 aagaagaaggcacccaacgccatcaaggagatcaggaagtttgcacagaaggccatggg 213
||||| | ||| || || ||| | |||||||||||||| ||||| |||||||| |||||
Sbjct: 184 aagaaaatggctccaaaggccgttaaggagatcaggaaatttgcccagaaggctatggg 242
>gb|BX254425.1|BX254425 BX254425 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP098D12 similar to 60S RIBOSOMAL PROTEIN
L31, mRNA sequence
Length = 656
Score = 85.7 bits (43), Expect = 2e-015
Identities = 100/119 (84%)
Strand = Plus / Plus
Query: 95 gaggtggtcaccagggagtacaccatcaacctccacaagcgcctccacggctgcacattc 154
||||| || |||||||||||||||||||| || |||||||| ||||| |||||||| ||
Sbjct: 84 gaggtcgtgaccagggagtacaccatcaatcttcacaagcgtctccatggctgcactttt 143
Query: 155 aagaagaaggcacccaacgccatcaaggagatcaggaagtttgcacagaaggccatggg 213
||||| | ||| || || ||| | |||||||||||||| ||| | |||||||| |||||
Sbjct: 144 aagaaaatggctccaaaggccgttaaggagatcaggaaattttcccagaaggctatggg 202
>gb|BE496396.1|BE496396 NXCI_017_D02_F NXCI (Nsf Xylem Compression wood Inclined) Pinus
taeda cDNA clone NXCI_017_D02 5' similar to Arabidopsis
thaliana sequence At2g19740 60S ribosomal protein L31
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 495
Score = 85.7 bits (43), Expect = 2e-015
Identities = 100/119 (84%)
Strand = Plus / Plus
Query: 95 gaggtggtcaccagggagtacaccatcaacctccacaagcgcctccacggctgcacattc 154
||||| || ||||||||||||||||| || || |||||||| ||||| |||||||| ||
Sbjct: 63 gaggtcgtgaccagggagtacaccattaatcttcacaagcgtctccatggctgcacgttt 122
Query: 155 aagaagaaggcacccaacgccatcaaggagatcaggaagtttgcacagaaggccatggg 213
||||| | ||| || || ||| | |||||||||||||| ||||| |||||||| |||||
Sbjct: 123 aagaaaatggctccaaaggccgttaaggagatcaggaaatttgcccagaaggctatggg 181
>gb|BF186007.1|BF186007 NXCI_132_A08_F NXCI (Nsf Xylem Compression wood Inclined) Pinus
taeda cDNA clone NXCI_132_A08 5' similar to Arabidopsis
thaliana sequence At2g19740 60S ribosomal protein L31
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 361
Score = 85.7 bits (43), Expect = 2e-015
Identities = 100/119 (84%)
Strand = Plus / Plus
Query: 95 gaggtggtcaccagggagtacaccatcaacctccacaagcgcctccacggctgcacattc 154
||||| || ||||||||||||||||| || || |||||||| ||||| |||||||| ||
Sbjct: 60 gaggtcgtgaccagggagtacaccattaatcttcacaagcgtctccatggctgcacgttt 119
Query: 155 aagaagaaggcacccaacgccatcaaggagatcaggaagtttgcacagaaggccatggg 213
||||| | ||| || || ||| | |||||||||||||| ||||| |||||||| |||||
Sbjct: 120 aagaaaatggctccaaaggccgttaaggagatcaggaaatttgcccagaaggctatggg 178
>gb|BG275938.1|BG275938 NXSI_149_G06_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_149_G06 5' similar to Arabidopsis thaliana
sequence At2g19740 60S ribosomal protein L31 see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 457
Score = 85.7 bits (43), Expect = 2e-015
Identities = 100/119 (84%)
Strand = Plus / Plus
Query: 95 gaggtggtcaccagggagtacaccatcaacctccacaagcgcctccacggctgcacattc 154
||||| || ||||||||||||||||| || || |||||||| ||||| |||||||| ||
Sbjct: 83 gaggtcgtgaccagggagtacaccattaatcttcacaagcgtctccatggctgcacgttt 142
Query: 155 aagaagaaggcacccaacgccatcaaggagatcaggaagtttgcacagaaggccatggg 213
||||| | ||| || || ||| | |||||||||||||| ||||| |||||||| |||||
Sbjct: 143 aagaaaatggctccaaaggccgttaaggagatcaggaaatttgcccagaaggctatggg 201
>gb|CF472413.1|CF472413 RTDS1_9_D01.g1_A015 Drought-stressed loblolly pine roots DS1 Pinus
taeda cDNA clone RTDS1_9_D01_A015 5', mRNA sequence
Length = 650
Score = 85.7 bits (43), Expect = 2e-015
Identities = 100/119 (84%)
Strand = Plus / Plus
Query: 95 gaggtggtcaccagggagtacaccatcaacctccacaagcgcctccacggctgcacattc 154
||||| || ||||||||||||||||| || || |||||||| ||||| |||||||| ||
Sbjct: 20 gaggtcgtgaccagggagtacaccattaatcttcacaagcgtctccatggctgcacgttt 79
Query: 155 aagaagaaggcacccaacgccatcaaggagatcaggaagtttgcacagaaggccatggg 213
||||| | ||| || || ||| | |||||||||||||| ||||| |||||||| |||||
Sbjct: 80 aagaaaatggctccaaaggccgttaaggagatcaggaaatttgcccagaaggctatggg 138
>gb|BX682787.1|BX682787 BX682787 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone 121G09_1, mRNA sequence
Length = 262
Score = 85.7 bits (43), Expect = 2e-015
Identities = 100/119 (84%)
Strand = Plus / Plus
Query: 95 gaggtggtcaccagggagtacaccatcaacctccacaagcgcctccacggctgcacattc 154
||||| || |||||||||||||||||||| || |||||||| ||||| |||||||| ||
Sbjct: 84 gaggtcgtgaccagggagtacaccatcaatcttcacaagcgtctccatggctgcactttt 143
Query: 155 aagaagaaggcacccaacgccatcaaggagatcaggaagtttgcacagaaggccatggg 213
||||| | ||| || || ||| | |||||||||||||| ||| | |||||||| |||||
Sbjct: 144 aagaaaatggctccaaaggccgttaaggagatcaggaaattttcccagaaggctatggg 202
>gb|CV136524.1|CV136524 EST847733 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone RPIAC80 5' end, mRNA sequence
Length = 779
Score = 85.7 bits (43), Expect = 2e-015
Identities = 100/119 (84%)
Strand = Plus / Plus
Query: 95 gaggtggtcaccagggagtacaccatcaacctccacaagcgcctccacggctgcacattc 154
||||| || ||||||||||||||||| || || |||||||| ||||| |||||||| ||
Sbjct: 71 gaggtcgtgaccagggagtacaccattaatcttcacaagcgtctccatggctgcacgttt 130
Query: 155 aagaagaaggcacccaacgccatcaaggagatcaggaagtttgcacagaaggccatggg 213
||||| | ||| || || ||| | |||||||||||||| ||||| |||||||| |||||
Sbjct: 131 aagaaaatggctccaaaggccgttaaggagatcaggaaatttgcccagaaggctatggg 189
>gb|DR024781.1|DR024781 STRS1_67_A05.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_67_A05_A034 5', mRNA sequence
Length = 378
Score = 85.7 bits (43), Expect = 2e-015
Identities = 100/119 (84%)
Strand = Plus / Plus
Query: 95 gaggtggtcaccagggagtacaccatcaacctccacaagcgcctccacggctgcacattc 154
||||| || ||||||||||||||||| || || |||||||| ||||| |||||||| ||
Sbjct: 52 gaggtcgtgaccagggagtacaccattaatcttcacaagcgtctccatggctgcacgttt 111
Query: 155 aagaagaaggcacccaacgccatcaaggagatcaggaagtttgcacagaaggccatggg 213
||||| | ||| || || ||| | |||||||||||||| ||||| |||||||| |||||
Sbjct: 112 aagaaaatggctccaaaggccgttaaggagatcaggaaatttgcccagaaggctatggg 170
>gb|DR058464.1|DR058464 RTNIT1_12_A03.b1_A029 Roots minus nitrogen Pinus taeda cDNA clone
RTNIT1_12_A03_A029 3', mRNA sequence
Length = 705
Score = 85.7 bits (43), Expect = 2e-015
Identities = 100/119 (84%)
Strand = Plus / Minus
Query: 95 gaggtggtcaccagggagtacaccatcaacctccacaagcgcctccacggctgcacattc 154
||||| || ||||||||||||||||| || || |||||||| ||||| |||||||| ||
Sbjct: 628 gaggtcgtgaccagggagtacaccattaatcttcacaagcgtctccatggctgcacgttt 569
Query: 155 aagaagaaggcacccaacgccatcaaggagatcaggaagtttgcacagaaggccatggg 213
||||| | ||| || || ||| | |||||||||||||| ||||| |||||||| |||||
Sbjct: 568 aagaaaatggctccaaaggccgttaaggagatcaggaaatttgcccagaaggctatggg 510
>gb|DR058537.1|DR058537 RTNIT1_12_A03.g1_A029 Roots minus nitrogen Pinus taeda cDNA clone
RTNIT1_12_A03_A029 5', mRNA sequence
Length = 691
Score = 85.7 bits (43), Expect = 2e-015
Identities = 100/119 (84%)
Strand = Plus / Minus
Query: 95 gaggtggtcaccagggagtacaccatcaacctccacaagcgcctccacggctgcacattc 154
||||| || ||||||||||||||||| || || |||||||| ||||| |||||||| ||
Sbjct: 608 gaggtcgtgaccagggagtacaccattaatcttcacaagcgtctccatggctgcacgttt 549
Query: 155 aagaagaaggcacccaacgccatcaaggagatcaggaagtttgcacagaaggccatggg 213
||||| | ||| || || ||| | |||||||||||||| ||||| |||||||| |||||
Sbjct: 548 aagaaaatggctccaaaggccgttaaggagatcaggaaatttgcccagaaggctatggg 490
>gb|DR060182.1|DR060182 RTNIT1_26_F03.b1_A029 Roots minus nitrogen Pinus taeda cDNA clone
RTNIT1_26_F03_A029 3', mRNA sequence
Length = 712
Score = 85.7 bits (43), Expect = 2e-015
Identities = 100/119 (84%)
Strand = Plus / Plus
Query: 95 gaggtggtcaccagggagtacaccatcaacctccacaagcgcctccacggctgcacattc 154
||||| || ||||||||||||||||| || || |||||||| ||||| |||||||| ||
Sbjct: 77 gaggtcgtgaccagggagtacaccattaatcttcacaagcgtctccatggctgcacgttt 136
Query: 155 aagaagaaggcacccaacgccatcaaggagatcaggaagtttgcacagaaggccatggg 213
||||| | ||| || || ||| | |||||||||||||| ||||| |||||||| |||||
Sbjct: 137 aagaaaatggctccaaaggccgttaaggagatcaggaaatttgcccagaaggctatggg 195
>gb|DR060260.1|DR060260 RTNIT1_26_F03.g1_A029 Roots minus nitrogen Pinus taeda cDNA clone
RTNIT1_26_F03_A029 5', mRNA sequence
Length = 698
Score = 85.7 bits (43), Expect = 2e-015
Identities = 100/119 (84%)
Strand = Plus / Plus
Query: 95 gaggtggtcaccagggagtacaccatcaacctccacaagcgcctccacggctgcacattc 154
||||| || ||||||||||||||||| || || |||||||| ||||| |||||||| ||
Sbjct: 60 gaggtcgtgaccagggagtacaccattaatcttcacaagcgtctccatggctgcacgttt 119
Query: 155 aagaagaaggcacccaacgccatcaaggagatcaggaagtttgcacagaaggccatggg 213
||||| | ||| || || ||| | |||||||||||||| ||||| |||||||| |||||
Sbjct: 120 aagaaaatggctccaaaggccgttaaggagatcaggaaatttgcccagaaggctatggg 178
>gb|DR091869.1|DR091869 RTAL1_24_B09.g1_A029 Roots plus added aluminum Pinus taeda cDNA
clone RTAL1_24_B09_A029 5', mRNA sequence
Length = 756
Score = 85.7 bits (43), Expect = 2e-015
Identities = 100/119 (84%)
Strand = Plus / Plus
Query: 95 gaggtggtcaccagggagtacaccatcaacctccacaagcgcctccacggctgcacattc 154
||||| || ||||||||||||||||| || || |||||||| ||||| |||||||| ||
Sbjct: 60 gaggtcgtgaccagggagtacaccattaatcttcacaagcgtctccatggctgcacgttt 119
Query: 155 aagaagaaggcacccaacgccatcaaggagatcaggaagtttgcacagaaggccatggg 213
||||| | ||| || || ||| | |||||||||||||| ||||| |||||||| |||||
Sbjct: 120 aagaaaatggctccaaaggccgttaaggagatcaggaaatttgcccagaaggctatggg 178
>gb|DR096237.1|DR096237 STRR1_26_E02.g1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_26_E02_A033 5', mRNA sequence
Length = 780
Score = 85.7 bits (43), Expect = 2e-015
Identities = 100/119 (84%)
Strand = Plus / Plus
Query: 95 gaggtggtcaccagggagtacaccatcaacctccacaagcgcctccacggctgcacattc 154
||||| || ||||||||||||||||| || || |||||||| ||||| |||||||| ||
Sbjct: 346 gaggtcgtgaccagggagtacaccattaatcttcacaagcgtctccatggctgcacgttt 405
Query: 155 aagaagaaggcacccaacgccatcaaggagatcaggaagtttgcacagaaggccatggg 213
||||| | ||| || || ||| | |||||||||||||| ||||| |||||||| |||||
Sbjct: 406 aagaaaatggctccaaaggccgttaaggagatcaggaaatttgcccagaaggctatggg 464
>gb|DR112225.1|DR112225 RTS1_26_E09.g1_A029 Roots minus sulfur Pinus taeda cDNA clone
RTS1_26_E09_A029 5', mRNA sequence
Length = 446
Score = 85.7 bits (43), Expect = 2e-015
Identities = 100/119 (84%)
Strand = Plus / Plus
Query: 95 gaggtggtcaccagggagtacaccatcaacctccacaagcgcctccacggctgcacattc 154
||||| || ||||||||||||||||| || || |||||||| ||||| |||||||| ||
Sbjct: 21 gaggtcgtgaccagggagtacaccattaatcttcacaagcgtctccatggctgcacgttt 80
Query: 155 aagaagaaggcacccaacgccatcaaggagatcaggaagtttgcacagaaggccatggg 213
||||| | ||| || || ||| | |||||||||||||| ||||| |||||||| |||||
Sbjct: 81 aagaaaatggctccaaaggccgttaaggagatcaggaaatttgcccagaaggctatggg 139
>gb|DT626264.1|DT626264 EST1158188 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone PIMA889 5' end, mRNA sequence
Length = 780
Score = 85.7 bits (43), Expect = 2e-015
Identities = 100/119 (84%)
Strand = Plus / Plus
Query: 95 gaggtggtcaccagggagtacaccatcaacctccacaagcgcctccacggctgcacattc 154
||||| || ||||||||||||||||| || || |||||||| ||||| |||||||| ||
Sbjct: 71 gaggtcgtgaccagggagtacaccattaatcttcacaagcgtctccatggctgcacgttt 130
Query: 155 aagaagaaggcacccaacgccatcaaggagatcaggaagtttgcacagaaggccatggg 213
||||| | ||| || || ||| | |||||||||||||| ||||| |||||||| |||||
Sbjct: 131 aagaaaatggctccaaaggccgttaaggagatcaggaaatttgcccagaaggctatggg 189
>gb|DR024706.1|DR024706 STRS1_67_A05.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_67_A05_A034 3', mRNA sequence
Length = 607
Score = 83.8 bits (42), Expect = 8e-015
Identities = 93/110 (84%)
Strand = Plus / Plus
Query: 104 accagggagtacaccatcaacctccacaagcgcctccacggctgcacattcaagaagaag 163
||||||||||||||||| || || |||||||| ||||| |||||||| || ||||| | |
Sbjct: 1 accagggagtacaccattaatcttcacaagcgtctccatggctgcacgtttaagaaaatg 60
Query: 164 gcacccaacgccatcaaggagatcaggaagtttgcacagaaggccatggg 213
|| || || ||| | |||||||||||||| ||||| |||||||| |||||
Sbjct: 61 gctccaaaggccgttaaggagatcaggaaatttgcccagaaggctatggg 110
>gb|DN462478.1|DN462478 EST958277 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone RPIIM84 5' end, mRNA sequence
Length = 776
Score = 81.8 bits (41), Expect = 3e-014
Identities = 149/185 (80%)
Strand = Plus / Plus
Query: 98 gtggtcaccagggagtacaccatcaacctccacaagcgcctccacggctgcacattcaag 157
||||| || ||||||||||| ||||| || |||| ||||||||| ||||| || || ||
Sbjct: 83 gtggtgacgagggagtacactatcaatcttcacaggcgcctccatggctgtacttttaaa 142
Query: 158 aagaaggcacccaacgccatcaaggagatcaggaagtttgcacagaaggccatgggcacc 217
|| | ||| || || ||| | || ||||||||||| ||||| |||||||||||||| ||
Sbjct: 143 aaaatggccccaaaggccgttaaagagatcaggaattttgcccagaaggccatgggaact 202
Query: 218 acggacgtcaggatcgatgtgaagctcaacaagcacatctggagcagcgggatcaggagc 277
| ||||| ||| | ||||||||||| |||||| | |||||||| || |||||||||
Sbjct: 203 tctgacgtgaggcttgatgtgaagctgaacaaggctgtgtggagcaggggcatcaggagc 262
Query: 278 gtgcc 282
|||||
Sbjct: 263 gtgcc 267
>gb|DT626951.1|DT626951 EST1160027 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone PIMAT19 5' end, mRNA sequence
Length = 778
Score = 81.8 bits (41), Expect = 3e-014
Identities = 149/185 (80%)
Strand = Plus / Plus
Query: 98 gtggtcaccagggagtacaccatcaacctccacaagcgcctccacggctgcacattcaag 157
||||| || ||||||||||| ||||| || |||| ||||||||| ||||| || || ||
Sbjct: 83 gtggtgacgagggagtacactatcaatcttcacaggcgcctccatggctgtacttttaaa 142
Query: 158 aagaaggcacccaacgccatcaaggagatcaggaagtttgcacagaaggccatgggcacc 217
|| | ||| || || ||| | || ||||||||||| ||||| |||||||||||||| ||
Sbjct: 143 aaaatggccccaaaggccgttaaagagatcaggaattttgcccagaaggccatgggaact 202
Query: 218 acggacgtcaggatcgatgtgaagctcaacaagcacatctggagcagcgggatcaggagc 277
| ||||| ||| | ||||||||||| |||||| | |||||||| || |||||||||
Sbjct: 203 tctgacgtgaggcttgatgtgaagctgaacaaggctgtgtggagcaggggcatcaggagc 262
Query: 278 gtgcc 282
|||||
Sbjct: 263 gtgcc 267
>gb|BF778182.1|BF778182 NXSI_080_B02_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_080_B02 5' similar to Arabidopsis thaliana
sequence At2g19740 60S ribosomal protein L31 see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 285
Score = 79.8 bits (40), Expect = 1e-013
Identities = 99/119 (83%)
Strand = Plus / Plus
Query: 95 gaggtggtcaccagggagtacaccatcaacctccacaagcgcctccacggctgcacattc 154
||||| || ||||||||||||||||| || || |||||||| ||||| |||||||| ||
Sbjct: 58 gaggtcgtgaccagggagtacaccattaatcttcacaagcgtctccatggctgcacgttt 117
Query: 155 aagaagaaggcacccaacgccatcaaggagatcaggaagtttgcacagaaggccatggg 213
||||| | ||| || || ||| | |||||||||||||| ||||| |||||| | |||||
Sbjct: 118 aagaaaatggctccaaaggccgttaaggagatcaggaaatttgcccagaagnctatggg 176
>gb|AW225661.1|AW225661 ST70A05 Pine TriplEx shoot tip library Pinus taeda cDNA clone
ST70A05, mRNA sequence
Length = 342
Score = 77.8 bits (39), Expect = 5e-013
Identities = 99/119 (83%)
Strand = Plus / Plus
Query: 95 gaggtggtcaccagggagtacaccatcaacctccacaagcgcctccacggctgcacattc 154
||||| || ||||||||||||||||| || || |||||||| ||||| || ||||| ||
Sbjct: 57 gaggtcgtgaccagggagtacaccattaatcttcacaagcgtctccatgggtgcacgttt 116
Query: 155 aagaagaaggcacccaacgccatcaaggagatcaggaagtttgcacagaaggccatggg 213
||||| | ||| || || ||| | |||||||||||||| ||||| |||||||| |||||
Sbjct: 117 aagaaaatggctccaaaggccgttaaggagatcaggaaatttgcccagaaggctatggg 175
>gb|AL750025.1|AL750025 AL750025 AS Pinus pinaster cDNA clone AS03H12 similar to RP L31,
mRNA sequence
Length = 502
Score = 77.8 bits (39), Expect = 5e-013
Identities = 90/107 (84%)
Strand = Plus / Plus
Query: 107 agggagtacaccatcaacctccacaagcgcctccacggctgcacattcaagaagaaggca 166
||||||||||||||||| || |||||||| ||||| |||||||| || ||||| | |||
Sbjct: 74 agggagtacaccatcaatcttcacaagcgtctccatggctgcacttttaagaaaatggct 133
Query: 167 cccaacgccatcaaggagatcaggaagtttgcacagaaggccatggg 213
|| || ||| | |||||||||||||| ||| | |||||||| |||||
Sbjct: 134 ccaaaggccgttaaggagatcaggaaattttcccagaaggctatggg 180
>gb|BX681005.1|BX681005 BX681005 RS Pinus pinaster cDNA clone RS51H06, mRNA sequence
Length = 628
Score = 77.8 bits (39), Expect = 5e-013
Identities = 90/107 (84%)
Strand = Plus / Plus
Query: 107 agggagtacaccatcaacctccacaagcgcctccacggctgcacattcaagaagaaggca 166
||||||||||||||||| || |||||||| ||||| |||||||| || ||||| | |||
Sbjct: 91 agggagtacaccatcaatcttcacaagcgtctccatggctgcacttttaagaaaatggct 150
Query: 167 cccaacgccatcaaggagatcaggaagtttgcacagaaggccatggg 213
|| || ||| | |||||||||||||| ||| | |||||||| |||||
Sbjct: 151 ccaaaggccgttaaggagatcaggaaattttcccagaaggctatggg 197
>gb|CO174718.1|CO174718 NDL1_45_G04.g1_A029 Needles control Pinus taeda cDNA clone
NDL1_45_G04_A029 5', mRNA sequence
Length = 652
Score = 77.8 bits (39), Expect = 5e-013
Identities = 99/119 (83%)
Strand = Plus / Plus
Query: 95 gaggtggtcaccagggagtacaccatcaacctccacaagcgcctccacggctgcacattc 154
||||| || ||||||||||||||||| || || |||||||| ||||| |||||||| ||
Sbjct: 46 gaggtcgtgaccagggagtacaccattaatcttcacaagcgtctccatggctgcacgttt 105
Query: 155 aagaagaaggcacccaacgccatcaaggagatcaggaagtttgcacagaaggccatggg 213
||||| | ||| || || ||| | |||||||||| ||| ||||| |||||||| |||||
Sbjct: 106 aagaaaatggctccaaaggccgttaaggagatcacgaaatttgcccagaaggctatggg 164
>gb|AW755231.1|AW755231 PC12F10 Pine TriplEx pollen cone library Pinus taeda cDNA clone
PC12F10, mRNA sequence
Length = 371
Score = 75.8 bits (38), Expect = 2e-012
Identities = 89/106 (83%)
Strand = Plus / Plus
Query: 108 gggagtacaccatcaacctccacaagcgcctccacggctgcacattcaagaagaaggcac 167
||||||||||||| || || |||||||| ||||| |||||||| || ||||| | ||| |
Sbjct: 155 gggagtacaccattaatcttcacaagcgtctccatggctgcacgtttaagaaaatggctc 214
Query: 168 ccaacgccatcaaggagatcaggaagtttgcacagaaggccatggg 213
| || ||| | |||||||||||||| ||||| |||||||| |||||
Sbjct: 215 caaaggccgttaaggagatcaggaaatttgcccagaaggctatggg 260
>gb|AL749630.1|AL749630 AL749630 AN Pinus pinaster cDNA clone AN03H12 similar to RP L31,
mRNA sequence
Length = 204
Score = 73.8 bits (37), Expect = 7e-012
Identities = 88/105 (83%)
Strand = Plus / Plus
Query: 109 ggagtacaccatcaacctccacaagcgcctccacggctgcacattcaagaagaaggcacc 168
||||||||||||||| || |||||||| ||||| |||||||| || ||||| | ||| ||
Sbjct: 1 ggagtacaccatcaatcttcacaagcgtctccatggctgcacttttaagaaaatggctcc 60
Query: 169 caacgccatcaaggagatcaggaagtttgcacagaaggccatggg 213
|| ||| | |||||||||||||| ||| | |||||||| |||||
Sbjct: 61 aaaggccgttaaggagatcaggaaattttcccagaaggctatggg 105
>gb|BE643878.1|BE643878 NXCI_048_E02_F NXCI (Nsf Xylem Compression wood Inclined) Pinus
taeda cDNA clone NXCI_048_E02 5' similar to Arabidopsis
thaliana sequence At2g19740 60S ribosomal protein L31
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 238
Score = 71.9 bits (36), Expect = 3e-011
Identities = 87/104 (83%)
Strand = Plus / Plus
Query: 95 gaggtggtcaccagggagtacaccatcaacctccacaagcgcctccacggctgcacattc 154
||||| || ||||||||||||||||| || || |||||||| ||||| |||||||| ||
Sbjct: 62 gaggtcgtgaccagggagtacaccattaatcttcacaagcgtctccatggctgcacgttt 121
Query: 155 aagaagaaggcacccaacgccatcaaggagatcaggaagtttgc 198
||||| | ||| || || ||| | |||||||||||||| |||||
Sbjct: 122 aagaaaatggctccaaaggccgttaaggagatcaggaaatttgc 165
>gb|CO172573.1|CO172573 NDL1_30_C03.g1_A029 Needles control Pinus taeda cDNA clone
NDL1_30_C03_A029 5', mRNA sequence
Length = 745
Score = 65.9 bits (33), Expect = 2e-009
Identities = 84/101 (83%)
Strand = Plus / Plus
Query: 182 gagatcaggaagtttgcacagaaggccatgggcaccacggacgtcaggatcgatgtgaag 241
||||||||||| ||||| |||||||||||||| || | ||||| ||| | |||||||||
Sbjct: 333 gagatcaggaattttgcccagaaggccatgggaacttctgacgtgaggcttgatgtgaag 392
Query: 242 ctcaacaagcacatctggagcagcgggatcaggagcgtgcc 282
|| |||||| | |||||||| || ||||||||||||||
Sbjct: 393 ctgaacaaggctgtgtggagcaggggcatcaggagcgtgcc 433
Score = 44.1 bits (22), Expect = 0.007
Identities = 43/50 (86%)
Strand = Plus / Plus
Query: 98 gtggtcaccagggagtacaccatcaacctccacaagcgcctccacggctg 147
||||| || ||||||||||| ||||| || |||| ||||||||| |||||
Sbjct: 37 gtggtgacgagggagtacactatcaatcttcacaggcgcctccatggctg 86
>gb|DR014550.1|DR014550 HEAT1_50_D12.b1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_50_D12_A029 3', mRNA sequence
Length = 798
Score = 58.0 bits (29), Expect = 4e-007
Identities = 56/65 (86%)
Strand = Plus / Plus
Query: 179 aaggagatcaggaagtttgcacagaaggccatgggcaccacggacgtcaggatcgatgtg 238
|||||||||||||| ||||| |||||||| ||||| ||||| || || ||| | ||||||
Sbjct: 34 aaggagatcaggaaatttgcccagaaggctatgggaaccaccgatgtgaggctggatgtg 93
Query: 239 aagct 243
|||||
Sbjct: 94 aagct 98
>gb|BX252371.1|BX252371 BX252371 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP063E06 similar to 60S RIBOSOMAL PROTEIN
L31, mRNA sequence
Length = 602
Score = 52.0 bits (26), Expect = 3e-005
Identities = 71/86 (82%)
Strand = Plus / Plus
Query: 128 cacaagcgcctccacggctgcacattcaagaagaaggcacccaacgccatcaaggagatc 187
|||||||| ||||| |||||||| || ||||| | ||| || || ||| | |||||||||
Sbjct: 9 cacaagcgtctccatggctgcacttttaagaaaatggctccaaaggccgttaaggagatc 68
Query: 188 aggaagtttgcacagaaggccatggg 213
||||| ||| | |||||||| |||||
Sbjct: 69 aggaaattttcccagaaggctatggg 94
>gb|CF395700.1|CF395700 RTDS2_16_C07.g1_A021 Drought-stressed loblolly pine roots DS2 Pinus
taeda cDNA clone RTDS2_16_C07_A021 5', mRNA sequence
Length = 581
Score = 50.1 bits (25), Expect = 1e-004
Identities = 64/77 (83%)
Strand = Plus / Plus
Query: 137 ctccacggctgcacattcaagaagaaggcacccaacgccatcaaggagatcaggaagttt 196
||||| |||||||| || ||||| | ||| || || ||| | |||||||||||||| |||
Sbjct: 5 ctccatggctgcacgtttaagaaaatggctccaaaggccgttaaggagatcaggaaattt 64
Query: 197 gcacagaaggccatggg 213
|| |||||||| |||||
Sbjct: 65 gcccagaaggctatggg 81
>gb|AA556149.1|AA556149 4 Loblolly pine N Pinus taeda cDNA clone 2N11A, mRNA sequence
Length = 275
Score = 46.1 bits (23), Expect = 0.002
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 108 gggagtacaccatcaacctccacaagcgcctccacggctgcac 150
||||||||||||| || || |||||||| ||||| ||||||||
Sbjct: 77 gggagtacaccattaatcttcacaagcgtctccatggctgcac 119
>gb|CF472338.1|CF472338 RTDS1_9_D01.b1_A015 Drought-stressed loblolly pine roots DS1 Pinus
taeda cDNA clone RTDS1_9_D01_A015 3', mRNA sequence
Length = 528
Score = 46.1 bits (23), Expect = 0.002
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 179 aaggagatcaggaagtttgcacagaaggccatggg 213
|||||||||||||| ||||| |||||||| |||||
Sbjct: 3 aaggagatcaggaaatttgcccagaaggctatggg 37
>gb|BF517995.1|BF517995 NXSI_032_F08_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_032_F08 5' similar to Arabidopsis thaliana
sequence At2g19740 60S ribosomal protein L31 see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 264
Score = 44.1 bits (22), Expect = 0.007
Identities = 43/50 (86%)
Strand = Plus / Plus
Query: 98 gtggtcaccagggagtacaccatcaacctccacaagcgcctccacggctg 147
||||| || ||||||||||| ||||| || |||| ||||||||| |||||
Sbjct: 100 gtggtgacgagggagtacactatcaatcttcacaggcgcctccatggctg 149
>gb|BG275981.1|BG275981 NXSI_147_C11_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_147_C11 5' similar to Arabidopsis thaliana
sequence At2g19740 60S ribosomal protein L31 see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 227
Score = 44.1 bits (22), Expect = 0.007
Identities = 43/50 (86%)
Strand = Plus / Plus
Query: 98 gtggtcaccagggagtacaccatcaacctccacaagcgcctccacggctg 147
||||| || ||||||||||| ||||| || |||| ||||||||| |||||
Sbjct: 86 gtggtgacgagggagtacactatcaatcttcacaggcgcctccatggctg 135
>gb|DR745593.1|DR745593 RTCU1_30_F08.g1_A029 Roots plus added copper Pinus taeda cDNA clone
RTCU1_30_F08_A029 5', mRNA sequence
Length = 410
Score = 42.1 bits (21), Expect = 0.026
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 110 gagtacaccatcaacctccacaagcgcctccac 142
|||||||||||| | |||||||||||| |||||
Sbjct: 5 gagtacaccatccatctccacaagcgcgtccac 37
>gb|AW755158.1|AW755158 PC11F09 Pine TriplEx pollen cone library Pinus taeda cDNA clone
PC11F09, mRNA sequence
Length = 470
Score = 38.2 bits (19), Expect = 0.41
Identities = 49/59 (83%)
Strand = Plus / Plus
Query: 176 atcaaggagatcaggaagtttgcacagaaggccatgggcaccacggacgtcaggatcga 234
|||||||||||| ||||||| || ||||| ||||||||| | || |||||||||||
Sbjct: 170 atcaaggagatccggaagttcgccgagaagcagatgggcacccccgatgtcaggatcga 228
>gb|CO174639.1|CO174639 NDL1_45_G04.b1_A029 Needles control Pinus taeda cDNA clone
NDL1_45_G04_A029 3', mRNA sequence
Length = 526
Score = 38.2 bits (19), Expect = 0.41
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 179 aaggagatcaggaagtttgcacagaag 205
|||||||||||||| ||||| ||||||
Sbjct: 4 aaggagatcaggaaatttgcccagaag 30
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 85,127
Number of Sequences: 355925
Number of extensions: 85127
Number of successful extensions: 22697
Number of sequences better than 0.5: 47
Number of HSP's better than 0.5 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 22609
Number of HSP's gapped (non-prelim): 83
length of query: 609
length of database: 217,277,237
effective HSP length: 19
effective length of query: 590
effective length of database: 210,514,662
effective search space: 124203650580
effective search space used: 124203650580
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)