BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 1716424.2.5
(1999 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CF385785.1|CF385785 RTDR1_6_F10.b1_A015 Loblolly pine ro... 46 0.006
gb|CF386671.1|CF386671 RTDR1_16_G09.b1_A015 Loblolly pine r... 46 0.006
gb|CF387731.1|CF387731 RTDR1_19_E03.g1_A015 Loblolly pine r... 46 0.006
gb|CF387982.1|CF387982 RTDR1_17_D01.b1_A015 Loblolly pine r... 46 0.006
gb|CF389336.1|CF389336 RTDR2_7_F07.b1_A021 Loblolly pine ro... 46 0.006
gb|CF389444.1|CF389444 RTDR2_7_F07.g1_A021 Loblolly pine ro... 46 0.006
gb|CF400732.1|CF400732 RTWW1_7_F09.g1_A015 Well-watered lob... 46 0.006
gb|CF400956.1|CF400956 RTWW1_9_D04.b1_A015 Well-watered lob... 46 0.006
gb|CF401062.1|CF401062 RTWW1_9_D04.g1_A015 Well-watered lob... 46 0.006
gb|CF401174.1|CF401174 RTWW1_10_G11.g1_A015 Well-watered lo... 46 0.006
gb|CF402644.1|CF402644 RTWW1_21_C02.g1_A015 Well-watered lo... 46 0.006
gb|CF474754.1|CF474754 RTWW2_7_F02.g1_A021 Well-watered lob... 46 0.006
gb|CF475076.1|CF475076 RTWW2_5_H06.g1_A021 Well-watered lob... 46 0.006
gb|CF475411.1|CF475411 RTWW2_13_H03.g1_A021 Well-watered lo... 46 0.006
gb|CF478418.1|CF478418 RTWW3_20_D10.b1_A022 Well-watered lo... 46 0.006
gb|CF664833.1|CF664833 RTCNT1_12_E12.b1_A029 Root control P... 46 0.006
gb|CF670738.1|CF670738 RTCNT1_52_E09.b1_A029 Root control P... 46 0.006
gb|CF670746.1|CF670746 RTCNT1_52_F09.b1_A029 Root control P... 46 0.006
gb|CF672829.1|CF672829 RTCNT1_74_E09.b1_A029 Root control P... 46 0.006
gb|CF672901.1|CF672901 RTCNT1_74_E09.g1_A029 Root control P... 46 0.006
gb|CO168908.1|CO168908 NDL1_3_H10.b1_A029 Needles control P... 46 0.006
gb|CO168990.1|CO168990 NDL1_3_H10.g1_A029 Needles control P... 46 0.006
gb|CO169355.1|CO169355 NDL1_6_B06.g1_A029 Needles control P... 46 0.006
gb|CO169454.1|CO169454 NDL1_7_E03.b1_A029 Needles control P... 46 0.006
gb|CO169531.1|CO169531 NDL1_7_E03.g1_A029 Needles control P... 46 0.006
gb|CO174020.1|CO174020 NDL1_41_E03.b1_A029 Needles control ... 46 0.006
gb|CO174785.1|CO174785 NDL1_46_F08.b1_A029 Needles control ... 46 0.006
gb|CO174864.1|CO174864 NDL1_46_F08.g1_A029 Needles control ... 46 0.006
gb|CO361634.1|CO361634 NDL2_6_B10.b1_A029 Needles control 2... 46 0.006
gb|CO361705.1|CO361705 NDL2_6_B10.g1_A029 Needles control 2... 46 0.006
gb|CO364319.1|CO364319 RTK1_15_B05.b1_A029 Roots minus pota... 46 0.006
gb|CO364401.1|CO364401 RTK1_15_B05.g1_A029 Roots minus pota... 46 0.006
gb|CV031396.1|CV031396 RTNACL1_1_G10.b1_A029 Roots plus add... 46 0.006
gb|CV031482.1|CV031482 RTNACL1_1_G10.g1_A029 Roots plus add... 46 0.006
gb|DR025052.1|DR025052 STRS1_69_G01.b1_A034 Shoot tip pitch... 46 0.006
gb|DR025133.1|DR025133 STRS1_69_G01.g1_A034 Shoot tip pitch... 46 0.006
gb|DR069451.1|DR069451 RTDK1_7_H01.b1_A029 Roots, dark Pinu... 46 0.006
gb|DR090325.1|DR090325 RTAL1_14_G02.b1_A029 Roots plus adde... 46 0.006
gb|DR095294.1|DR095294 STRR1_20_D03.b1_A033 Stem Response R... 46 0.006
gb|DR097478.1|DR097478 STRR1_34_H04.g3_A033 Stem Response R... 46 0.006
gb|DR097817.1|DR097817 STRR1_37_E11.b1_A033 Stem Response R... 46 0.006
gb|DR097889.1|DR097889 STRR1_37_E11.g1_A033 Stem Response R... 46 0.006
gb|DR098417.1|DR098417 STRR1_45_H01.b1_A033 Stem Response R... 46 0.006
gb|DR098494.1|DR098494 STRR1_45_H01.g1_A033 Stem Response R... 46 0.006
gb|DR101460.1|DR101460 STRR1_73_F06.b1_A033 Stem Response R... 46 0.006
gb|DR118697.1|DR118697 RTMG1_18_D07.g1_A029 Roots minus mag... 46 0.006
gb|DR385802.1|DR385802 RTHG1_11_A09.b1_A029 Roots plus adde... 46 0.006
>gb|CF385785.1|CF385785 RTDR1_6_F10.b1_A015 Loblolly pine roots recovering from drought DR1
Pinus taeda cDNA clone RTDR1_6_F10_A015 3', mRNA
sequence
Length = 662
Score = 46.1 bits (23), Expect = 0.006
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 537 tgaactcctccggcttctcccac 559
|||||||||||||||||||||||
Sbjct: 62 tgaactcctccggcttctcccac 40
>gb|CF386671.1|CF386671 RTDR1_16_G09.b1_A015 Loblolly pine roots recovering from drought
DR1 Pinus taeda cDNA clone RTDR1_16_G09_A015 3', mRNA
sequence
Length = 609
Score = 46.1 bits (23), Expect = 0.006
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 537 tgaactcctccggcttctcccac 559
|||||||||||||||||||||||
Sbjct: 114 tgaactcctccggcttctcccac 92
>gb|CF387731.1|CF387731 RTDR1_19_E03.g1_A015 Loblolly pine roots recovering from drought
DR1 Pinus taeda cDNA clone RTDR1_19_E03_A015 5', mRNA
sequence
Length = 689
Score = 46.1 bits (23), Expect = 0.006
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 537 tgaactcctccggcttctcccac 559
|||||||||||||||||||||||
Sbjct: 421 tgaactcctccggcttctcccac 443
>gb|CF387982.1|CF387982 RTDR1_17_D01.b1_A015 Loblolly pine roots recovering from drought
DR1 Pinus taeda cDNA clone RTDR1_17_D01_A015 3', mRNA
sequence
Length = 660
Score = 46.1 bits (23), Expect = 0.006
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 524 aaccgctccggcatgaactcctccggcttctccca 558
|||||||||||| |||||||| ||||||||||||
Sbjct: 86 aaccgctccggcctgaactccaacggcttctccca 52
>gb|CF389336.1|CF389336 RTDR2_7_F07.b1_A021 Loblolly pine roots recovering from drought DR2
Pinus taeda cDNA clone RTDR2_7_F07_A021 3', mRNA
sequence
Length = 592
Score = 46.1 bits (23), Expect = 0.006
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 537 tgaactcctccggcttctcccac 559
|||||||||||||||||||||||
Sbjct: 108 tgaactcctccggcttctcccac 86
>gb|CF389444.1|CF389444 RTDR2_7_F07.g1_A021 Loblolly pine roots recovering from drought DR2
Pinus taeda cDNA clone RTDR2_7_F07_A021 5', mRNA
sequence
Length = 627
Score = 46.1 bits (23), Expect = 0.006
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 537 tgaactcctccggcttctcccac 559
|||||||||||||||||||||||
Sbjct: 421 tgaactcctccggcttctcccac 399
>gb|CF400732.1|CF400732 RTWW1_7_F09.g1_A015 Well-watered loblolly pine roots WW1 Pinus
taeda cDNA clone RTWW1_7_F09_A015 5', mRNA sequence
Length = 748
Score = 46.1 bits (23), Expect = 0.006
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 537 tgaactcctccggcttctcccac 559
|||||||||||||||||||||||
Sbjct: 204 tgaactcctccggcttctcccac 182
>gb|CF400956.1|CF400956 RTWW1_9_D04.b1_A015 Well-watered loblolly pine roots WW1 Pinus
taeda cDNA clone RTWW1_9_D04_A015 3', mRNA sequence
Length = 593
Score = 46.1 bits (23), Expect = 0.006
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 537 tgaactcctccggcttctcccac 559
|||||||||||||||||||||||
Sbjct: 107 tgaactcctccggcttctcccac 85
>gb|CF401062.1|CF401062 RTWW1_9_D04.g1_A015 Well-watered loblolly pine roots WW1 Pinus
taeda cDNA clone RTWW1_9_D04_A015 5', mRNA sequence
Length = 717
Score = 46.1 bits (23), Expect = 0.006
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 537 tgaactcctccggcttctcccac 559
|||||||||||||||||||||||
Sbjct: 335 tgaactcctccggcttctcccac 313
>gb|CF401174.1|CF401174 RTWW1_10_G11.g1_A015 Well-watered loblolly pine roots WW1 Pinus
taeda cDNA clone RTWW1_10_G11_A015 5', mRNA sequence
Length = 738
Score = 46.1 bits (23), Expect = 0.006
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 537 tgaactcctccggcttctcccac 559
|||||||||||||||||||||||
Sbjct: 237 tgaactcctccggcttctcccac 215
>gb|CF402644.1|CF402644 RTWW1_21_C02.g1_A015 Well-watered loblolly pine roots WW1 Pinus
taeda cDNA clone RTWW1_21_C02_A015 5', mRNA sequence
Length = 613
Score = 46.1 bits (23), Expect = 0.006
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 537 tgaactcctccggcttctcccac 559
|||||||||||||||||||||||
Sbjct: 467 tgaactcctccggcttctcccac 445
>gb|CF474754.1|CF474754 RTWW2_7_F02.g1_A021 Well-watered loblolly pine roots WW2 Pinus
taeda cDNA clone RTWW2_7_F02_A021 5', mRNA sequence
Length = 702
Score = 46.1 bits (23), Expect = 0.006
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 537 tgaactcctccggcttctcccac 559
|||||||||||||||||||||||
Sbjct: 552 tgaactcctccggcttctcccac 530
>gb|CF475076.1|CF475076 RTWW2_5_H06.g1_A021 Well-watered loblolly pine roots WW2 Pinus
taeda cDNA clone RTWW2_5_H06_A021 5', mRNA sequence
Length = 652
Score = 46.1 bits (23), Expect = 0.006
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 537 tgaactcctccggcttctcccac 559
|||||||||||||||||||||||
Sbjct: 256 tgaactcctccggcttctcccac 234
>gb|CF475411.1|CF475411 RTWW2_13_H03.g1_A021 Well-watered loblolly pine roots WW2 Pinus
taeda cDNA clone RTWW2_13_H03_A021 5', mRNA sequence
Length = 676
Score = 46.1 bits (23), Expect = 0.006
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 537 tgaactcctccggcttctcccac 559
|||||||||||||||||||||||
Sbjct: 387 tgaactcctccggcttctcccac 365
>gb|CF478418.1|CF478418 RTWW3_20_D10.b1_A022 Well-watered loblolly pine roots WW3 Pinus
taeda cDNA clone RTWW3_20_D10_A022 3', mRNA sequence
Length = 567
Score = 46.1 bits (23), Expect = 0.006
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 537 tgaactcctccggcttctcccac 559
|||||||||||||||||||||||
Sbjct: 80 tgaactcctccggcttctcccac 58
>gb|CF664833.1|CF664833 RTCNT1_12_E12.b1_A029 Root control Pinus taeda cDNA clone
RTCNT1_12_E12_A029 3', mRNA sequence
Length = 671
Score = 46.1 bits (23), Expect = 0.006
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 537 tgaactcctccggcttctcccac 559
|||||||||||||||||||||||
Sbjct: 186 tgaactcctccggcttctcccac 164
>gb|CF670738.1|CF670738 RTCNT1_52_E09.b1_A029 Root control Pinus taeda cDNA clone
RTCNT1_52_E09_A029 3', mRNA sequence
Length = 605
Score = 46.1 bits (23), Expect = 0.006
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 524 aaccgctccggcatgaactcctccggcttctccca 558
|||||||||||| |||||||| ||||||||||||
Sbjct: 48 aaccgctccggcctgaactccaacggcttctccca 14
>gb|CF670746.1|CF670746 RTCNT1_52_F09.b1_A029 Root control Pinus taeda cDNA clone
RTCNT1_52_F09_A029 3', mRNA sequence
Length = 633
Score = 46.1 bits (23), Expect = 0.006
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 524 aaccgctccggcatgaactcctccggcttctccca 558
|||||||||||| |||||||| ||||||||||||
Sbjct: 76 aaccgctccggcctgaactccaacggcttctccca 42
>gb|CF672829.1|CF672829 RTCNT1_74_E09.b1_A029 Root control Pinus taeda cDNA clone
RTCNT1_74_E09_A029 3', mRNA sequence
Length = 695
Score = 46.1 bits (23), Expect = 0.006
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 524 aaccgctccggcatgaactcctccggcttctccca 558
|||||||||||| |||||||| ||||||||||||
Sbjct: 122 aaccgctccggcctgaactccaacggcttctccca 88
>gb|CF672901.1|CF672901 RTCNT1_74_E09.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_74_E09_A029 5', mRNA sequence
Length = 758
Score = 46.1 bits (23), Expect = 0.006
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 524 aaccgctccggcatgaactcctccggcttctccca 558
|||||||||||| |||||||| ||||||||||||
Sbjct: 503 aaccgctccggcctgaactccaacggcttctccca 469
>gb|CO168908.1|CO168908 NDL1_3_H10.b1_A029 Needles control Pinus taeda cDNA clone
NDL1_3_H10_A029 3', mRNA sequence
Length = 628
Score = 46.1 bits (23), Expect = 0.006
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 537 tgaactcctccggcttctcccac 559
|||||||||||||||||||||||
Sbjct: 108 tgaactcctccggcttctcccac 86
>gb|CO168990.1|CO168990 NDL1_3_H10.g1_A029 Needles control Pinus taeda cDNA clone
NDL1_3_H10_A029 5', mRNA sequence
Length = 763
Score = 46.1 bits (23), Expect = 0.006
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 537 tgaactcctccggcttctcccac 559
|||||||||||||||||||||||
Sbjct: 478 tgaactcctccggcttctcccac 456
>gb|CO169355.1|CO169355 NDL1_6_B06.g1_A029 Needles control Pinus taeda cDNA clone
NDL1_6_B06_A029 5', mRNA sequence
Length = 799
Score = 46.1 bits (23), Expect = 0.006
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 537 tgaactcctccggcttctcccac 559
|||||||||||||||||||||||
Sbjct: 355 tgaactcctccggcttctcccac 333
>gb|CO169454.1|CO169454 NDL1_7_E03.b1_A029 Needles control Pinus taeda cDNA clone
NDL1_7_E03_A029 3', mRNA sequence
Length = 603
Score = 46.1 bits (23), Expect = 0.006
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 537 tgaactcctccggcttctcccac 559
|||||||||||||||||||||||
Sbjct: 115 tgaactcctccggcttctcccac 93
>gb|CO169531.1|CO169531 NDL1_7_E03.g1_A029 Needles control Pinus taeda cDNA clone
NDL1_7_E03_A029 5', mRNA sequence
Length = 701
Score = 46.1 bits (23), Expect = 0.006
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 537 tgaactcctccggcttctcccac 559
|||||||||||||||||||||||
Sbjct: 488 tgaactcctccggcttctcccac 466
>gb|CO174020.1|CO174020 NDL1_41_E03.b1_A029 Needles control Pinus taeda cDNA clone
NDL1_41_E03_A029 3', mRNA sequence
Length = 536
Score = 46.1 bits (23), Expect = 0.006
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 537 tgaactcctccggcttctcccac 559
|||||||||||||||||||||||
Sbjct: 48 tgaactcctccggcttctcccac 26
>gb|CO174785.1|CO174785 NDL1_46_F08.b1_A029 Needles control Pinus taeda cDNA clone
NDL1_46_F08_A029 3', mRNA sequence
Length = 602
Score = 46.1 bits (23), Expect = 0.006
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 537 tgaactcctccggcttctcccac 559
|||||||||||||||||||||||
Sbjct: 114 tgaactcctccggcttctcccac 92
>gb|CO174864.1|CO174864 NDL1_46_F08.g1_A029 Needles control Pinus taeda cDNA clone
NDL1_46_F08_A029 5', mRNA sequence
Length = 800
Score = 46.1 bits (23), Expect = 0.006
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 537 tgaactcctccggcttctcccac 559
|||||||||||||||||||||||
Sbjct: 587 tgaactcctccggcttctcccac 565
>gb|CO361634.1|CO361634 NDL2_6_B10.b1_A029 Needles control 2 Pinus taeda cDNA clone
NDL2_6_B10_A029 3', mRNA sequence
Length = 795
Score = 46.1 bits (23), Expect = 0.006
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 537 tgaactcctccggcttctcccac 559
|||||||||||||||||||||||
Sbjct: 307 tgaactcctccggcttctcccac 285
>gb|CO361705.1|CO361705 NDL2_6_B10.g1_A029 Needles control 2 Pinus taeda cDNA clone
NDL2_6_B10_A029 5', mRNA sequence
Length = 798
Score = 46.1 bits (23), Expect = 0.006
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 537 tgaactcctccggcttctcccac 559
|||||||||||||||||||||||
Sbjct: 528 tgaactcctccggcttctcccac 506
>gb|CO364319.1|CO364319 RTK1_15_B05.b1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_15_B05_A029 3', mRNA sequence
Length = 561
Score = 46.1 bits (23), Expect = 0.006
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 537 tgaactcctccggcttctcccac 559
|||||||||||||||||||||||
Sbjct: 364 tgaactcctccggcttctcccac 386
>gb|CO364401.1|CO364401 RTK1_15_B05.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_15_B05_A029 5', mRNA sequence
Length = 544
Score = 46.1 bits (23), Expect = 0.006
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 537 tgaactcctccggcttctcccac 559
|||||||||||||||||||||||
Sbjct: 353 tgaactcctccggcttctcccac 375
>gb|CV031396.1|CV031396 RTNACL1_1_G10.b1_A029 Roots plus added NaCl Pinus taeda cDNA clone
RTNACL1_1_G10_A029 3', mRNA sequence
Length = 521
Score = 46.1 bits (23), Expect = 0.006
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 537 tgaactcctccggcttctcccac 559
|||||||||||||||||||||||
Sbjct: 26 tgaactcctccggcttctcccac 4
>gb|CV031482.1|CV031482 RTNACL1_1_G10.g1_A029 Roots plus added NaCl Pinus taeda cDNA clone
RTNACL1_1_G10_A029 5', mRNA sequence
Length = 768
Score = 46.1 bits (23), Expect = 0.006
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 537 tgaactcctccggcttctcccac 559
|||||||||||||||||||||||
Sbjct: 555 tgaactcctccggcttctcccac 533
>gb|DR025052.1|DR025052 STRS1_69_G01.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_69_G01_A034 3', mRNA sequence
Length = 884
Score = 46.1 bits (23), Expect = 0.006
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 537 tgaactcctccggcttctcccac 559
|||||||||||||||||||||||
Sbjct: 427 tgaactcctccggcttctcccac 405
>gb|DR025133.1|DR025133 STRS1_69_G01.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_69_G01_A034 5', mRNA sequence
Length = 711
Score = 46.1 bits (23), Expect = 0.006
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 537 tgaactcctccggcttctcccac 559
|||||||||||||||||||||||
Sbjct: 676 tgaactcctccggcttctcccac 654
>gb|DR069451.1|DR069451 RTDK1_7_H01.b1_A029 Roots, dark Pinus taeda cDNA clone
RTDK1_7_H01_A029 3', mRNA sequence
Length = 787
Score = 46.1 bits (23), Expect = 0.006
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 537 tgaactcctccggcttctcccac 559
|||||||||||||||||||||||
Sbjct: 507 tgaactcctccggcttctcccac 529
>gb|DR090325.1|DR090325 RTAL1_14_G02.b1_A029 Roots plus added aluminum Pinus taeda cDNA
clone RTAL1_14_G02_A029 3', mRNA sequence
Length = 788
Score = 46.1 bits (23), Expect = 0.006
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 524 aaccgctccggcatgaactcctccggcttctccca 558
|||||||||||| |||||||| ||||||||||||
Sbjct: 249 aaccgctccggcctgaactccaacggcttctccca 215
>gb|DR095294.1|DR095294 STRR1_20_D03.b1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_20_D03_A033 3', mRNA sequence
Length = 823
Score = 46.1 bits (23), Expect = 0.006
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 537 tgaactcctccggcttctcccac 559
|||||||||||||||||||||||
Sbjct: 336 tgaactcctccggcttctcccac 314
>gb|DR097478.1|DR097478 STRR1_34_H04.g3_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_34_H04_A033 5', mRNA sequence
Length = 799
Score = 46.1 bits (23), Expect = 0.006
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 537 tgaactcctccggcttctcccac 559
|||||||||||||||||||||||
Sbjct: 308 tgaactcctccggcttctcccac 286
>gb|DR097817.1|DR097817 STRR1_37_E11.b1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_37_E11_A033 3', mRNA sequence
Length = 753
Score = 46.1 bits (23), Expect = 0.006
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 537 tgaactcctccggcttctcccac 559
|||||||||||||||||||||||
Sbjct: 289 tgaactcctccggcttctcccac 267
>gb|DR097889.1|DR097889 STRR1_37_E11.g1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_37_E11_A033 5', mRNA sequence
Length = 694
Score = 46.1 bits (23), Expect = 0.006
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 537 tgaactcctccggcttctcccac 559
|||||||||||||||||||||||
Sbjct: 481 tgaactcctccggcttctcccac 459
>gb|DR098417.1|DR098417 STRR1_45_H01.b1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_45_H01_A033 3', mRNA sequence
Length = 632
Score = 46.1 bits (23), Expect = 0.006
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 537 tgaactcctccggcttctcccac 559
|||||||||||||||||||||||
Sbjct: 114 tgaactcctccggcttctcccac 92
>gb|DR098494.1|DR098494 STRR1_45_H01.g1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_45_H01_A033 5', mRNA sequence
Length = 667
Score = 46.1 bits (23), Expect = 0.006
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 537 tgaactcctccggcttctcccac 559
|||||||||||||||||||||||
Sbjct: 340 tgaactcctccggcttctcccac 318
>gb|DR101460.1|DR101460 STRR1_73_F06.b1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_73_F06_A033 3', mRNA sequence
Length = 816
Score = 46.1 bits (23), Expect = 0.006
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 537 tgaactcctccggcttctcccac 559
|||||||||||||||||||||||
Sbjct: 337 tgaactcctccggcttctcccac 315
>gb|DR118697.1|DR118697 RTMG1_18_D07.g1_A029 Roots minus magnesium Pinus taeda cDNA clone
RTMG1_18_D07_A029 5', mRNA sequence
Length = 623
Score = 46.1 bits (23), Expect = 0.006
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 537 tgaactcctccggcttctcccac 559
|||||||||||||||||||||||
Sbjct: 456 tgaactcctccggcttctcccac 478
>gb|DR385802.1|DR385802 RTHG1_11_A09.b1_A029 Roots plus added mercury Pinus taeda cDNA
clone RTHG1_11_A09_A029 3', mRNA sequence
Length = 800
Score = 46.1 bits (23), Expect = 0.006
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 537 tgaactcctccggcttctcccac 559
|||||||||||||||||||||||
Sbjct: 310 tgaactcctccggcttctcccac 288
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 202,143
Number of Sequences: 355925
Number of extensions: 202143
Number of successful extensions: 65481
Number of sequences better than 0.5: 47
Number of HSP's better than 0.5 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 65395
Number of HSP's gapped (non-prelim): 86
length of query: 1999
length of database: 217,277,237
effective HSP length: 20
effective length of query: 1979
effective length of database: 210,158,737
effective search space: 415904140523
effective search space used: 415904140523
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)