BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 1716424.2.3
(1842 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CF385785.1|CF385785 RTDR1_6_F10.b1_A015 Loblolly pine ro... 46 0.005
gb|CF386671.1|CF386671 RTDR1_16_G09.b1_A015 Loblolly pine r... 46 0.005
gb|CF387731.1|CF387731 RTDR1_19_E03.g1_A015 Loblolly pine r... 46 0.005
gb|CF389336.1|CF389336 RTDR2_7_F07.b1_A021 Loblolly pine ro... 46 0.005
gb|CF389444.1|CF389444 RTDR2_7_F07.g1_A021 Loblolly pine ro... 46 0.005
gb|CF400732.1|CF400732 RTWW1_7_F09.g1_A015 Well-watered lob... 46 0.005
gb|CF400956.1|CF400956 RTWW1_9_D04.b1_A015 Well-watered lob... 46 0.005
gb|CF401062.1|CF401062 RTWW1_9_D04.g1_A015 Well-watered lob... 46 0.005
gb|CF401174.1|CF401174 RTWW1_10_G11.g1_A015 Well-watered lo... 46 0.005
gb|CF402644.1|CF402644 RTWW1_21_C02.g1_A015 Well-watered lo... 46 0.005
gb|CF474754.1|CF474754 RTWW2_7_F02.g1_A021 Well-watered lob... 46 0.005
gb|CF475076.1|CF475076 RTWW2_5_H06.g1_A021 Well-watered lob... 46 0.005
gb|CF475411.1|CF475411 RTWW2_13_H03.g1_A021 Well-watered lo... 46 0.005
gb|CF478418.1|CF478418 RTWW3_20_D10.b1_A022 Well-watered lo... 46 0.005
gb|CF664833.1|CF664833 RTCNT1_12_E12.b1_A029 Root control P... 46 0.005
gb|CO168908.1|CO168908 NDL1_3_H10.b1_A029 Needles control P... 46 0.005
gb|CO168990.1|CO168990 NDL1_3_H10.g1_A029 Needles control P... 46 0.005
gb|CO169355.1|CO169355 NDL1_6_B06.g1_A029 Needles control P... 46 0.005
gb|CO169454.1|CO169454 NDL1_7_E03.b1_A029 Needles control P... 46 0.005
gb|CO169531.1|CO169531 NDL1_7_E03.g1_A029 Needles control P... 46 0.005
gb|CO174020.1|CO174020 NDL1_41_E03.b1_A029 Needles control ... 46 0.005
gb|CO174785.1|CO174785 NDL1_46_F08.b1_A029 Needles control ... 46 0.005
gb|CO174864.1|CO174864 NDL1_46_F08.g1_A029 Needles control ... 46 0.005
gb|CO361634.1|CO361634 NDL2_6_B10.b1_A029 Needles control 2... 46 0.005
gb|CO361705.1|CO361705 NDL2_6_B10.g1_A029 Needles control 2... 46 0.005
gb|CO364319.1|CO364319 RTK1_15_B05.b1_A029 Roots minus pota... 46 0.005
gb|CO364401.1|CO364401 RTK1_15_B05.g1_A029 Roots minus pota... 46 0.005
gb|CV031482.1|CV031482 RTNACL1_1_G10.g1_A029 Roots plus add... 46 0.005
gb|DR025052.1|DR025052 STRS1_69_G01.b1_A034 Shoot tip pitch... 46 0.005
gb|DR025133.1|DR025133 STRS1_69_G01.g1_A034 Shoot tip pitch... 46 0.005
gb|DR069451.1|DR069451 RTDK1_7_H01.b1_A029 Roots, dark Pinu... 46 0.005
gb|DR095294.1|DR095294 STRR1_20_D03.b1_A033 Stem Response R... 46 0.005
gb|DR097478.1|DR097478 STRR1_34_H04.g3_A033 Stem Response R... 46 0.005
gb|DR097817.1|DR097817 STRR1_37_E11.b1_A033 Stem Response R... 46 0.005
gb|DR097889.1|DR097889 STRR1_37_E11.g1_A033 Stem Response R... 46 0.005
gb|DR098417.1|DR098417 STRR1_45_H01.b1_A033 Stem Response R... 46 0.005
gb|DR098494.1|DR098494 STRR1_45_H01.g1_A033 Stem Response R... 46 0.005
gb|DR101460.1|DR101460 STRR1_73_F06.b1_A033 Stem Response R... 46 0.005
gb|DR118697.1|DR118697 RTMG1_18_D07.g1_A029 Roots minus mag... 46 0.005
gb|DR385802.1|DR385802 RTHG1_11_A09.b1_A029 Roots plus adde... 46 0.005
gb|CF385478.1|CF385478 RTDR1_4_A12.b1_A015 Loblolly pine ro... 40 0.32
gb|CF386061.1|CF386061 RTDR1_8_D11.b1_A015 Loblolly pine ro... 40 0.32
gb|CF386892.1|CF386892 RTDR1_9_D05.g1_A015 Loblolly pine ro... 40 0.32
gb|CF386988.1|CF386988 RTDR1_10_G08.b1_A015 Loblolly pine r... 40 0.32
gb|CF387701.1|CF387701 RTDR1_19_D06.g1_A015 Loblolly pine r... 40 0.32
gb|CF388779.1|CF388779 RTDR2_15_C04.g1_A021 Loblolly pine r... 40 0.32
gb|CF392494.1|CF392494 RTDR3_6_A11.b1_A022 Loblolly pine ro... 40 0.32
gb|CF396771.1|CF396771 RTDS2_24_H10.b1_A021 Drought-stresse... 40 0.32
gb|CF400152.1|CF400152 RTWW1_3_F10.g1_A015 Well-watered lob... 40 0.32
gb|CF400183.1|CF400183 RTWW1_3_G10.g1_A015 Well-watered lob... 40 0.32
gb|CF400218.1|CF400218 RTWW1_4_C08.b1_A015 Well-watered lob... 40 0.32
gb|CF400297.1|CF400297 RTWW1_4_C08.g1_A015 Well-watered lob... 40 0.32
gb|CF402117.1|CF402117 RTWW1_20_E05.b1_A015 Well-watered lo... 40 0.32
gb|CF402134.1|CF402134 RTWW1_20_E05.g1_A015 Well-watered lo... 40 0.32
gb|CF402294.1|CF402294 RTWW1_19_C09.g1_A015 Well-watered lo... 40 0.32
gb|CF472528.1|CF472528 RTDS1_10_F12.b1_A015 Drought-stresse... 40 0.32
gb|CF663159.1|CF663159 RTCNT1_1_D07.b1_A029 Root control Pi... 40 0.32
gb|CF665452.1|CF665452 RTCNT1_16_C12.b1_A029 Root control P... 40 0.32
gb|CF665533.1|CF665533 RTCNT1_16_C12.g1_A029 Root control P... 40 0.32
gb|CO172329.1|CO172329 NDL1_29_B08.b1_A029 Needles control ... 40 0.32
gb|CO172721.1|CO172721 NDL1_31_B02.g1_A029 Needles control ... 40 0.32
gb|CO172737.1|CO172737 NDL1_31_C06.g1_A029 Needles control ... 40 0.32
gb|CO174050.1|CO174050 NDL1_41_H10.b1_A029 Needles control ... 40 0.32
gb|CO174135.1|CO174135 NDL1_41_H10.g1_A029 Needles control ... 40 0.32
gb|CO174468.1|CO174468 NDL1_44_E05.b1_A029 Needles control ... 40 0.32
gb|CO200490.1|CO200490 GEO2_7_F10.g1_A032 Root gravitropism... 40 0.32
gb|CV144250.1|CV144250 EST855459 Sequencing ESTs from loblo... 40 0.32
gb|CV144355.1|CV144355 EST855564 Sequencing ESTs from loblo... 40 0.32
gb|CV144572.1|CV144572 EST855781 Sequencing ESTs from loblo... 40 0.32
gb|CX648229.1|CX648229 COLD1_27_G12.b1_A029 Root cold Pinus... 40 0.32
gb|CX648961.1|CX648961 COLD1_32_B12.b1_A029 Root cold Pinus... 40 0.32
gb|DR018207.1|DR018207 STRS1_21_D10.b1_A034 Shoot tip pitch... 40 0.32
gb|DR018269.1|DR018269 STRS1_21_D10.g1_A034 Shoot tip pitch... 40 0.32
gb|DR054235.1|DR054235 RTCA1_16_C02.b1_A029 Roots minus cal... 40 0.32
gb|DR068849.1|DR068849 RTDK1_3_F08.b1_A029 Roots, dark Pinu... 40 0.32
gb|DR068937.1|DR068937 RTDK1_3_F08.g1_A029 Roots, dark Pinu... 40 0.32
gb|DR070752.1|DR070752 RTDK1_15_H03.b1_A029 Roots, dark Pin... 40 0.32
gb|DR070829.1|DR070829 RTDK1_15_H03.g1_A029 Roots, dark Pin... 40 0.32
gb|DR097975.1|DR097975 STRR1_38_G01.b1_A033 Stem Response R... 40 0.32
gb|DR098049.1|DR098049 STRR1_38_G01.g1_A033 Stem Response R... 40 0.32
gb|DR744765.1|DR744765 RTCU1_24_F04.g1_A029 Roots plus adde... 40 0.32
gb|DR745282.1|DR745282 RTCU1_28_F12.b1_A029 Roots plus adde... 40 0.32
gb|DR745361.1|DR745361 RTCU1_28_F12.g1_A029 Roots plus adde... 40 0.32
gb|DT624634.1|DT624634 EST1158969 Sequencing ESTs from lobl... 40 0.32
gb|DT624906.1|DT624906 EST1159181 Sequencing ESTs from lobl... 40 0.32
>gb|CF385785.1|CF385785 RTDR1_6_F10.b1_A015 Loblolly pine roots recovering from drought DR1
Pinus taeda cDNA clone RTDR1_6_F10_A015 3', mRNA sequence
Length = 662
Score = 46.1 bits (23), Expect = 0.005
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 1298 atcggcagagacccggcggtctgggagaagcccgaggagttca 1340
||||| ||||| |||| ||| ||||||||||| ||||||||||
Sbjct: 20 atcgggagagatccggaggtgtgggagaagccggaggagttca 62
>gb|CF386671.1|CF386671 RTDR1_16_G09.b1_A015 Loblolly pine roots recovering from drought DR1
Pinus taeda cDNA clone RTDR1_16_G09_A015 3', mRNA
sequence
Length = 609
Score = 46.1 bits (23), Expect = 0.005
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 1298 atcggcagagacccggcggtctgggagaagcccgaggagttca 1340
||||| ||||| |||| ||| ||||||||||| ||||||||||
Sbjct: 72 atcgggagagatccggaggtgtgggagaagccggaggagttca 114
>gb|CF387731.1|CF387731 RTDR1_19_E03.g1_A015 Loblolly pine roots recovering from drought DR1
Pinus taeda cDNA clone RTDR1_19_E03_A015 5', mRNA
sequence
Length = 689
Score = 46.1 bits (23), Expect = 0.005
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 1298 atcggcagagacccggcggtctgggagaagcccgaggagttca 1340
||||| ||||| |||| ||| ||||||||||| ||||||||||
Sbjct: 463 atcgggagagatccggaggtgtgggagaagccggaggagttca 421
>gb|CF389336.1|CF389336 RTDR2_7_F07.b1_A021 Loblolly pine roots recovering from drought DR2
Pinus taeda cDNA clone RTDR2_7_F07_A021 3', mRNA sequence
Length = 592
Score = 46.1 bits (23), Expect = 0.005
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 1298 atcggcagagacccggcggtctgggagaagcccgaggagttca 1340
||||| ||||| |||| ||| ||||||||||| ||||||||||
Sbjct: 66 atcgggagagatccggaggtgtgggagaagccggaggagttca 108
>gb|CF389444.1|CF389444 RTDR2_7_F07.g1_A021 Loblolly pine roots recovering from drought DR2
Pinus taeda cDNA clone RTDR2_7_F07_A021 5', mRNA sequence
Length = 627
Score = 46.1 bits (23), Expect = 0.005
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 1298 atcggcagagacccggcggtctgggagaagcccgaggagttca 1340
||||| ||||| |||| ||| ||||||||||| ||||||||||
Sbjct: 379 atcgggagagatccggaggtgtgggagaagccggaggagttca 421
>gb|CF400732.1|CF400732 RTWW1_7_F09.g1_A015 Well-watered loblolly pine roots WW1 Pinus taeda
cDNA clone RTWW1_7_F09_A015 5', mRNA sequence
Length = 748
Score = 46.1 bits (23), Expect = 0.005
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 1298 atcggcagagacccggcggtctgggagaagcccgaggagttca 1340
||||| ||||| |||| ||| ||||||||||| ||||||||||
Sbjct: 162 atcgggagagatccggaggtgtgggagaagccggaggagttca 204
>gb|CF400956.1|CF400956 RTWW1_9_D04.b1_A015 Well-watered loblolly pine roots WW1 Pinus taeda
cDNA clone RTWW1_9_D04_A015 3', mRNA sequence
Length = 593
Score = 46.1 bits (23), Expect = 0.005
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 1298 atcggcagagacccggcggtctgggagaagcccgaggagttca 1340
||||| ||||| |||| ||| ||||||||||| ||||||||||
Sbjct: 65 atcgggagagatccggaggtgtgggagaagccggaggagttca 107
>gb|CF401062.1|CF401062 RTWW1_9_D04.g1_A015 Well-watered loblolly pine roots WW1 Pinus taeda
cDNA clone RTWW1_9_D04_A015 5', mRNA sequence
Length = 717
Score = 46.1 bits (23), Expect = 0.005
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 1298 atcggcagagacccggcggtctgggagaagcccgaggagttca 1340
||||| ||||| |||| ||| ||||||||||| ||||||||||
Sbjct: 293 atcgggagagatccggaggtgtgggagaagccggaggagttca 335
>gb|CF401174.1|CF401174 RTWW1_10_G11.g1_A015 Well-watered loblolly pine roots WW1 Pinus taeda
cDNA clone RTWW1_10_G11_A015 5', mRNA sequence
Length = 738
Score = 46.1 bits (23), Expect = 0.005
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 1298 atcggcagagacccggcggtctgggagaagcccgaggagttca 1340
||||| ||||| |||| ||| ||||||||||| ||||||||||
Sbjct: 195 atcgggagagatccggaggtgtgggagaagccggaggagttca 237
>gb|CF402644.1|CF402644 RTWW1_21_C02.g1_A015 Well-watered loblolly pine roots WW1 Pinus taeda
cDNA clone RTWW1_21_C02_A015 5', mRNA sequence
Length = 613
Score = 46.1 bits (23), Expect = 0.005
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 1298 atcggcagagacccggcggtctgggagaagcccgaggagttca 1340
||||| ||||| |||| ||| ||||||||||| ||||||||||
Sbjct: 425 atcgggagagatccggaggtgtgggagaagccggaggagttca 467
>gb|CF474754.1|CF474754 RTWW2_7_F02.g1_A021 Well-watered loblolly pine roots WW2 Pinus taeda
cDNA clone RTWW2_7_F02_A021 5', mRNA sequence
Length = 702
Score = 46.1 bits (23), Expect = 0.005
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 1298 atcggcagagacccggcggtctgggagaagcccgaggagttca 1340
||||| ||||| |||| ||| ||||||||||| ||||||||||
Sbjct: 510 atcgggagagatccggaggtgtgggagaagccggaggagttca 552
>gb|CF475076.1|CF475076 RTWW2_5_H06.g1_A021 Well-watered loblolly pine roots WW2 Pinus taeda
cDNA clone RTWW2_5_H06_A021 5', mRNA sequence
Length = 652
Score = 46.1 bits (23), Expect = 0.005
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 1298 atcggcagagacccggcggtctgggagaagcccgaggagttca 1340
||||| ||||| |||| ||| ||||||||||| ||||||||||
Sbjct: 214 atcgggagagatccggaggtgtgggagaagccggaggagttca 256
>gb|CF475411.1|CF475411 RTWW2_13_H03.g1_A021 Well-watered loblolly pine roots WW2 Pinus taeda
cDNA clone RTWW2_13_H03_A021 5', mRNA sequence
Length = 676
Score = 46.1 bits (23), Expect = 0.005
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 1298 atcggcagagacccggcggtctgggagaagcccgaggagttca 1340
||||| ||||| |||| ||| ||||||||||| ||||||||||
Sbjct: 345 atcgggagagatccggaggtgtgggagaagccggaggagttca 387
>gb|CF478418.1|CF478418 RTWW3_20_D10.b1_A022 Well-watered loblolly pine roots WW3 Pinus taeda
cDNA clone RTWW3_20_D10_A022 3', mRNA sequence
Length = 567
Score = 46.1 bits (23), Expect = 0.005
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 1298 atcggcagagacccggcggtctgggagaagcccgaggagttca 1340
||||| ||||| |||| ||| ||||||||||| ||||||||||
Sbjct: 38 atcgggagagatccggaggtgtgggagaagccggaggagttca 80
>gb|CF664833.1|CF664833 RTCNT1_12_E12.b1_A029 Root control Pinus taeda cDNA clone
RTCNT1_12_E12_A029 3', mRNA sequence
Length = 671
Score = 46.1 bits (23), Expect = 0.005
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 1298 atcggcagagacccggcggtctgggagaagcccgaggagttca 1340
||||| ||||| |||| ||| ||||||||||| ||||||||||
Sbjct: 144 atcgggagagatccggaggtgtgggagaagccggaggagttca 186
>gb|CO168908.1|CO168908 NDL1_3_H10.b1_A029 Needles control Pinus taeda cDNA clone
NDL1_3_H10_A029 3', mRNA sequence
Length = 628
Score = 46.1 bits (23), Expect = 0.005
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 1298 atcggcagagacccggcggtctgggagaagcccgaggagttca 1340
||||| ||||| |||| ||| ||||||||||| ||||||||||
Sbjct: 66 atcgggagagatccggaggtgtgggagaagccggaggagttca 108
>gb|CO168990.1|CO168990 NDL1_3_H10.g1_A029 Needles control Pinus taeda cDNA clone
NDL1_3_H10_A029 5', mRNA sequence
Length = 763
Score = 46.1 bits (23), Expect = 0.005
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 1298 atcggcagagacccggcggtctgggagaagcccgaggagttca 1340
||||| ||||| |||| ||| ||||||||||| ||||||||||
Sbjct: 436 atcgggagagatccggaggtgtgggagaagccggaggagttca 478
>gb|CO169355.1|CO169355 NDL1_6_B06.g1_A029 Needles control Pinus taeda cDNA clone
NDL1_6_B06_A029 5', mRNA sequence
Length = 799
Score = 46.1 bits (23), Expect = 0.005
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 1298 atcggcagagacccggcggtctgggagaagcccgaggagttca 1340
||||| ||||| |||| ||| ||||||||||| ||||||||||
Sbjct: 313 atcgggagagatccggaggtgtgggagaagccggaggagttca 355
>gb|CO169454.1|CO169454 NDL1_7_E03.b1_A029 Needles control Pinus taeda cDNA clone
NDL1_7_E03_A029 3', mRNA sequence
Length = 603
Score = 46.1 bits (23), Expect = 0.005
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 1298 atcggcagagacccggcggtctgggagaagcccgaggagttca 1340
||||| ||||| |||| ||| ||||||||||| ||||||||||
Sbjct: 73 atcgggagagatccggaggtgtgggagaagccggaggagttca 115
>gb|CO169531.1|CO169531 NDL1_7_E03.g1_A029 Needles control Pinus taeda cDNA clone
NDL1_7_E03_A029 5', mRNA sequence
Length = 701
Score = 46.1 bits (23), Expect = 0.005
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 1298 atcggcagagacccggcggtctgggagaagcccgaggagttca 1340
||||| ||||| |||| ||| ||||||||||| ||||||||||
Sbjct: 446 atcgggagagatccggaggtgtgggagaagccggaggagttca 488
>gb|CO174020.1|CO174020 NDL1_41_E03.b1_A029 Needles control Pinus taeda cDNA clone
NDL1_41_E03_A029 3', mRNA sequence
Length = 536
Score = 46.1 bits (23), Expect = 0.005
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 1298 atcggcagagacccggcggtctgggagaagcccgaggagttca 1340
||||| ||||| |||| ||| ||||||||||| ||||||||||
Sbjct: 6 atcgggagagatccggaggtgtgggagaagccggaggagttca 48
>gb|CO174785.1|CO174785 NDL1_46_F08.b1_A029 Needles control Pinus taeda cDNA clone
NDL1_46_F08_A029 3', mRNA sequence
Length = 602
Score = 46.1 bits (23), Expect = 0.005
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 1298 atcggcagagacccggcggtctgggagaagcccgaggagttca 1340
||||| ||||| |||| ||| ||||||||||| ||||||||||
Sbjct: 72 atcgggagagatccggaggtgtgggagaagccggaggagttca 114
>gb|CO174864.1|CO174864 NDL1_46_F08.g1_A029 Needles control Pinus taeda cDNA clone
NDL1_46_F08_A029 5', mRNA sequence
Length = 800
Score = 46.1 bits (23), Expect = 0.005
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 1298 atcggcagagacccggcggtctgggagaagcccgaggagttca 1340
||||| ||||| |||| ||| ||||||||||| ||||||||||
Sbjct: 545 atcgggagagatccggaggtgtgggagaagccggaggagttca 587
>gb|CO361634.1|CO361634 NDL2_6_B10.b1_A029 Needles control 2 Pinus taeda cDNA clone
NDL2_6_B10_A029 3', mRNA sequence
Length = 795
Score = 46.1 bits (23), Expect = 0.005
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 1298 atcggcagagacccggcggtctgggagaagcccgaggagttca 1340
||||| ||||| |||| ||| ||||||||||| ||||||||||
Sbjct: 265 atcgggagagatccggaggtgtgggagaagccggaggagttca 307
>gb|CO361705.1|CO361705 NDL2_6_B10.g1_A029 Needles control 2 Pinus taeda cDNA clone
NDL2_6_B10_A029 5', mRNA sequence
Length = 798
Score = 46.1 bits (23), Expect = 0.005
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 1298 atcggcagagacccggcggtctgggagaagcccgaggagttca 1340
||||| ||||| |||| ||| ||||||||||| ||||||||||
Sbjct: 486 atcgggagagatccggaggtgtgggagaagccggaggagttca 528
>gb|CO364319.1|CO364319 RTK1_15_B05.b1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_15_B05_A029 3', mRNA sequence
Length = 561
Score = 46.1 bits (23), Expect = 0.005
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 1298 atcggcagagacccggcggtctgggagaagcccgaggagttca 1340
||||| ||||| |||| ||| ||||||||||| ||||||||||
Sbjct: 406 atcgggagagatccggaggtgtgggagaagccggaggagttca 364
>gb|CO364401.1|CO364401 RTK1_15_B05.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_15_B05_A029 5', mRNA sequence
Length = 544
Score = 46.1 bits (23), Expect = 0.005
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 1298 atcggcagagacccggcggtctgggagaagcccgaggagttca 1340
||||| ||||| |||| ||| ||||||||||| ||||||||||
Sbjct: 395 atcgggagagatccggaggtgtgggagaagccggaggagttca 353
>gb|CV031482.1|CV031482 RTNACL1_1_G10.g1_A029 Roots plus added NaCl Pinus taeda cDNA clone
RTNACL1_1_G10_A029 5', mRNA sequence
Length = 768
Score = 46.1 bits (23), Expect = 0.005
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 1298 atcggcagagacccggcggtctgggagaagcccgaggagttca 1340
||||| ||||| |||| ||| ||||||||||| ||||||||||
Sbjct: 513 atcgggagagatccggaggtgtgggagaagccggaggagttca 555
>gb|DR025052.1|DR025052 STRS1_69_G01.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_69_G01_A034 3', mRNA sequence
Length = 884
Score = 46.1 bits (23), Expect = 0.005
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 1298 atcggcagagacccggcggtctgggagaagcccgaggagttca 1340
||||| ||||| |||| ||| ||||||||||| ||||||||||
Sbjct: 385 atcgggagagatccggaggtgtgggagaagccggaggagttca 427
>gb|DR025133.1|DR025133 STRS1_69_G01.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_69_G01_A034 5', mRNA sequence
Length = 711
Score = 46.1 bits (23), Expect = 0.005
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 1298 atcggcagagacccggcggtctgggagaagcccgaggagttca 1340
||||| ||||| |||| ||| ||||||||||| ||||||||||
Sbjct: 634 atcgggagagatccggaggtgtgggagaagccggaggagttca 676
>gb|DR069451.1|DR069451 RTDK1_7_H01.b1_A029 Roots, dark Pinus taeda cDNA clone
RTDK1_7_H01_A029 3', mRNA sequence
Length = 787
Score = 46.1 bits (23), Expect = 0.005
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 1298 atcggcagagacccggcggtctgggagaagcccgaggagttca 1340
||||| ||||| |||| ||| ||||||||||| ||||||||||
Sbjct: 549 atcgggagagatccggaggtgtgggagaagccggaggagttca 507
>gb|DR095294.1|DR095294 STRR1_20_D03.b1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_20_D03_A033 3', mRNA sequence
Length = 823
Score = 46.1 bits (23), Expect = 0.005
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 1298 atcggcagagacccggcggtctgggagaagcccgaggagttca 1340
||||| ||||| |||| ||| ||||||||||| ||||||||||
Sbjct: 294 atcgggagagatccggaggtgtgggagaagccggaggagttca 336
>gb|DR097478.1|DR097478 STRR1_34_H04.g3_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_34_H04_A033 5', mRNA sequence
Length = 799
Score = 46.1 bits (23), Expect = 0.005
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 1298 atcggcagagacccggcggtctgggagaagcccgaggagttca 1340
||||| ||||| |||| ||| ||||||||||| ||||||||||
Sbjct: 266 atcgggagagatccggaggtgtgggagaagccggaggagttca 308
>gb|DR097817.1|DR097817 STRR1_37_E11.b1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_37_E11_A033 3', mRNA sequence
Length = 753
Score = 46.1 bits (23), Expect = 0.005
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 1298 atcggcagagacccggcggtctgggagaagcccgaggagttca 1340
||||| ||||| |||| ||| ||||||||||| ||||||||||
Sbjct: 247 atcgggagagatccggaggtgtgggagaagccggaggagttca 289
>gb|DR097889.1|DR097889 STRR1_37_E11.g1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_37_E11_A033 5', mRNA sequence
Length = 694
Score = 46.1 bits (23), Expect = 0.005
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 1298 atcggcagagacccggcggtctgggagaagcccgaggagttca 1340
||||| ||||| |||| ||| ||||||||||| ||||||||||
Sbjct: 439 atcgggagagatccggaggtgtgggagaagccggaggagttca 481
>gb|DR098417.1|DR098417 STRR1_45_H01.b1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_45_H01_A033 3', mRNA sequence
Length = 632
Score = 46.1 bits (23), Expect = 0.005
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 1298 atcggcagagacccggcggtctgggagaagcccgaggagttca 1340
||||| ||||| |||| ||| ||||||||||| ||||||||||
Sbjct: 72 atcgggagagatccggaggtgtgggagaagccggaggagttca 114
>gb|DR098494.1|DR098494 STRR1_45_H01.g1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_45_H01_A033 5', mRNA sequence
Length = 667
Score = 46.1 bits (23), Expect = 0.005
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 1298 atcggcagagacccggcggtctgggagaagcccgaggagttca 1340
||||| ||||| |||| ||| ||||||||||| ||||||||||
Sbjct: 298 atcgggagagatccggaggtgtgggagaagccggaggagttca 340
>gb|DR101460.1|DR101460 STRR1_73_F06.b1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_73_F06_A033 3', mRNA sequence
Length = 816
Score = 46.1 bits (23), Expect = 0.005
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 1298 atcggcagagacccggcggtctgggagaagcccgaggagttca 1340
||||| ||||| |||| ||| ||||||||||| ||||||||||
Sbjct: 295 atcgggagagatccggaggtgtgggagaagccggaggagttca 337
>gb|DR118697.1|DR118697 RTMG1_18_D07.g1_A029 Roots minus magnesium Pinus taeda cDNA clone
RTMG1_18_D07_A029 5', mRNA sequence
Length = 623
Score = 46.1 bits (23), Expect = 0.005
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 1298 atcggcagagacccggcggtctgggagaagcccgaggagttca 1340
||||| ||||| |||| ||| ||||||||||| ||||||||||
Sbjct: 498 atcgggagagatccggaggtgtgggagaagccggaggagttca 456
>gb|DR385802.1|DR385802 RTHG1_11_A09.b1_A029 Roots plus added mercury Pinus taeda cDNA clone
RTHG1_11_A09_A029 3', mRNA sequence
Length = 800
Score = 46.1 bits (23), Expect = 0.005
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 1298 atcggcagagacccggcggtctgggagaagcccgaggagttca 1340
||||| ||||| |||| ||| ||||||||||| ||||||||||
Sbjct: 268 atcgggagagatccggaggtgtgggagaagccggaggagttca 310
>gb|CF385478.1|CF385478 RTDR1_4_A12.b1_A015 Loblolly pine roots recovering from drought DR1
Pinus taeda cDNA clone RTDR1_4_A12_A015 3', mRNA sequence
Length = 466
Score = 40.1 bits (20), Expect = 0.32
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 1298 atcggcagagacccggcggtctgggagaagcc 1329
||||| |||||||||| ||| |||||||||||
Sbjct: 66 atcggaagagacccggaggtgtgggagaagcc 97
>gb|CF386061.1|CF386061 RTDR1_8_D11.b1_A015 Loblolly pine roots recovering from drought DR1
Pinus taeda cDNA clone RTDR1_8_D11_A015 3', mRNA sequence
Length = 725
Score = 40.1 bits (20), Expect = 0.32
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 1298 atcggcagagacccggcggtctgggagaagcc 1329
||||| |||||||||| ||| |||||||||||
Sbjct: 329 atcggaagagacccggaggtgtgggagaagcc 360
>gb|CF386892.1|CF386892 RTDR1_9_D05.g1_A015 Loblolly pine roots recovering from drought DR1
Pinus taeda cDNA clone RTDR1_9_D05_A015 5', mRNA sequence
Length = 764
Score = 40.1 bits (20), Expect = 0.32
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 1298 atcggcagagacccggcggtctgggagaagcc 1329
||||| |||||||||| ||| |||||||||||
Sbjct: 653 atcggaagagacccggaggtgtgggagaagcc 684
>gb|CF386988.1|CF386988 RTDR1_10_G08.b1_A015 Loblolly pine roots recovering from drought DR1
Pinus taeda cDNA clone RTDR1_10_G08_A015 3', mRNA
sequence
Length = 682
Score = 40.1 bits (20), Expect = 0.32
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 1298 atcggcagagacccggcggtctgggagaagcc 1329
||||| |||||||||| ||| |||||||||||
Sbjct: 294 atcggaagagacccggaggtgtgggagaagcc 325
>gb|CF387701.1|CF387701 RTDR1_19_D06.g1_A015 Loblolly pine roots recovering from drought DR1
Pinus taeda cDNA clone RTDR1_19_D06_A015 5', mRNA
sequence
Length = 696
Score = 40.1 bits (20), Expect = 0.32
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 1298 atcggcagagacccggcggtctgggagaagcc 1329
||||| |||||||||| ||| |||||||||||
Sbjct: 477 atcggaagagacccggaggtgtgggagaagcc 446
>gb|CF388779.1|CF388779 RTDR2_15_C04.g1_A021 Loblolly pine roots recovering from drought DR2
Pinus taeda cDNA clone RTDR2_15_C04_A021 5', mRNA
sequence
Length = 663
Score = 40.1 bits (20), Expect = 0.32
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 1298 atcggcagagacccggcggtctgggagaagcc 1329
||||| |||||||||| ||| |||||||||||
Sbjct: 508 atcggaagagacccggaggtgtgggagaagcc 539
>gb|CF392494.1|CF392494 RTDR3_6_A11.b1_A022 Loblolly pine roots recovering from drought DR3
Pinus taeda cDNA clone RTDR3_6_A11_A022 3', mRNA sequence
Length = 566
Score = 40.1 bits (20), Expect = 0.32
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 1298 atcggcagagacccggcggtctgggagaagcc 1329
||||| |||||||||| ||| |||||||||||
Sbjct: 72 atcggaagagacccggaggtgtgggagaagcc 103
>gb|CF396771.1|CF396771 RTDS2_24_H10.b1_A021 Drought-stressed loblolly pine roots DS2 Pinus
taeda cDNA clone RTDS2_24_H10_A021 3', mRNA sequence
Length = 485
Score = 40.1 bits (20), Expect = 0.32
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 1298 atcggcagagacccggcggtctgggagaagcc 1329
||||| |||||||||| ||| |||||||||||
Sbjct: 20 atcggaagagacccggaggtgtgggagaagcc 51
>gb|CF400152.1|CF400152 RTWW1_3_F10.g1_A015 Well-watered loblolly pine roots WW1 Pinus taeda
cDNA clone RTWW1_3_F10_A015 5', mRNA sequence
Length = 721
Score = 40.1 bits (20), Expect = 0.32
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 1298 atcggcagagacccggcggtctgggagaagcc 1329
||||| |||||||||| ||| |||||||||||
Sbjct: 521 atcggaagagacccggaggtgtgggagaagcc 552
>gb|CF400183.1|CF400183 RTWW1_3_G10.g1_A015 Well-watered loblolly pine roots WW1 Pinus taeda
cDNA clone RTWW1_3_G10_A015 5', mRNA sequence
Length = 720
Score = 40.1 bits (20), Expect = 0.32
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 1298 atcggcagagacccggcggtctgggagaagcc 1329
||||| |||||||||| ||| |||||||||||
Sbjct: 358 atcggaagagacccggaggtgtgggagaagcc 389
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 176,371
Number of Sequences: 355925
Number of extensions: 176371
Number of successful extensions: 53506
Number of sequences better than 0.5: 85
Number of HSP's better than 0.5 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 53289
Number of HSP's gapped (non-prelim): 217
length of query: 1842
length of database: 217,277,237
effective HSP length: 20
effective length of query: 1822
effective length of database: 210,158,737
effective search space: 382909218814
effective search space used: 382909218814
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)