BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 1716233.2.1
(1153 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CF398158.1|CF398158 RTDS3_21_F07.g1_A022 Drought-stresse... 105 4e-021
gb|BG039333.1|BG039333 NXSI_097_H05_F NXSI (Nsf Xylem Side ... 101 6e-020
gb|BG317931.1|BG317931 NXPV_007_D11_F NXPV (Nsf Xylem Plani... 101 6e-020
gb|BG317951.1|BG317951 NXPV_007_G05_F NXPV (Nsf Xylem Plani... 101 6e-020
gb|BG318137.1|BG318137 NXPV_010_H05_F NXPV (Nsf Xylem Plani... 101 6e-020
gb|BQ698130.1|BQ698130 NXPV_064_H04_F NXPV (Nsf Xylem Plani... 101 6e-020
gb|CF389668.1|CF389668 RTDR2_8_D04.g1_A021 Loblolly pine ro... 101 6e-020
gb|CF401229.1|CF401229 RTWW1_11_G01.b1_A015 Well-watered lo... 101 6e-020
gb|CF401717.1|CF401717 RTWW1_14_C08.g1_A015 Well-watered lo... 101 6e-020
gb|CF402018.1|CF402018 RTWW1_16_A09.g1_A015 Well-watered lo... 101 6e-020
gb|CF402602.1|CF402602 RTWW1_21_D11.g1_A015 Well-watered lo... 101 6e-020
gb|CF402933.1|CF402933 RTWW1_23_G02.g1_A015 Well-watered lo... 101 6e-020
gb|CN784761.1|CN784761 EST783452 Sequencing ESTs from loblo... 101 6e-020
gb|CN784778.1|CN784778 EST783469 Sequencing ESTs from loblo... 101 6e-020
gb|CO159784.1|CO159784 FLD1_15_H03.g1_A029 Root flooded Pin... 101 6e-020
gb|CO163029.1|CO163029 FLD1_39_B07.b1_A029 Root flooded Pin... 101 6e-020
gb|CO163108.1|CO163108 FLD1_39_B07.g1_A029 Root flooded Pin... 101 6e-020
gb|CO176699.1|CO176699 NDL1_63_D10.g1_A029 Needles control ... 101 6e-020
gb|CO409013.1|CO409013 EST839398 Sequencing ESTs from loblo... 101 6e-020
gb|CO414085.1|CO414085 EST844470 Sequencing ESTs from loblo... 101 6e-020
gb|CV137468.1|CV137468 EST848677 Sequencing ESTs from loblo... 101 6e-020
gb|CV146400.1|CV146400 EST857609 Sequencing ESTs from loblo... 101 6e-020
gb|CV146771.1|CV146771 EST857980 Sequencing ESTs from loblo... 101 6e-020
gb|CX649065.1|CX649065 COLD1_32_F03.g1_A029 Root cold Pinus... 101 6e-020
gb|DN453630.1|DN453630 EST949429 Sequencing ESTs from loblo... 101 6e-020
gb|DN454863.1|DN454863 EST950662 Sequencing ESTs from loblo... 101 6e-020
gb|DN458835.1|DN458835 EST954634 Sequencing ESTs from loblo... 101 6e-020
gb|DR012793.1|DR012793 HEAT1_15_C04.b1_A029 Root at 37 C fo... 101 6e-020
gb|DR012876.1|DR012876 HEAT1_15_C04.g1_A029 Root at 37 C fo... 101 6e-020
gb|DR016530.1|DR016530 STRS1_10_E01.g1_A034 Shoot tip pitch... 101 6e-020
gb|DR020451.1|DR020451 STRS1_37_C11.b1_A034 Shoot tip pitch... 101 6e-020
gb|DR020527.1|DR020527 STRS1_37_C11.g1_A034 Shoot tip pitch... 101 6e-020
gb|DR071853.1|DR071853 RTDK1_22_B04.g1_A029 Roots, dark Pin... 101 6e-020
gb|DR093869.1|DR093869 STRR1_10_H08.g1_A033 Stem Response R... 101 6e-020
gb|DR120870.1|DR120870 RTMG1_32_B05.g1_A029 Roots minus mag... 101 6e-020
gb|DR693530.1|DR693530 EST1083618 Normalized pine embryo li... 101 6e-020
gb|DT625596.1|DT625596 EST1157520 Sequencing ESTs from lobl... 101 6e-020
gb|CF398489.1|CF398489 RTDS3_15_F05.b1_A022 Drought-stresse... 100 2e-019
gb|DT631216.1|DT631216 EST1146147 Normalized pine embryo li... 100 2e-019
gb|CV147831.1|CV147831 EST859040 Sequencing ESTs from loblo... 94 2e-017
gb|DR387294.1|DR387294 RTHG1_20_F12.g1_A029 Roots plus adde... 94 2e-017
gb|DR684083.1|DR684083 EST1074160 Normalized pine embryo li... 94 2e-017
gb|BE241217.1|BE241217 NXNV_180_E12_F Nsf Xylem Normal wood... 90 2e-016
gb|CF400393.1|CF400393 RTWW1_5_E07.b1_A015 Well-watered lob... 88 9e-016
gb|CF398111.1|CF398111 RTDS3_21_F07.b1_A022 Drought-stresse... 80 2e-013
gb|CO159714.1|CO159714 FLD1_15_H03.b1_A029 Root flooded Pin... 80 2e-013
gb|DR017539.1|DR017539 STRS1_17_A01.b1_A034 Shoot tip pitch... 80 2e-013
gb|DR093781.1|DR093781 STRR1_10_H08.b1_A033 Stem Response R... 80 2e-013
gb|BQ696960.1|BQ696960 NXPV_047_D03_F NXPV (Nsf Xylem Plani... 78 9e-013
gb|DR682722.1|DR682722 EST1072797 Normalized pine embryo li... 78 9e-013
gb|DR691152.1|DR691152 EST1081238 Normalized pine embryo li... 70 2e-010
gb|BG275719.1|BG275719 NXSI_145_A05_F NXSI (Nsf Xylem Side ... 66 3e-009
gb|BM428463.1|BM428463 NXRV_016_H11_F NXRV (Nsf Xylem Root ... 64 1e-008
gb|CO162832.1|CO162832 FLD1_37_F11.g1_A029 Root flooded Pin... 64 1e-008
gb|DR093692.1|DR093692 STRR1_9_G05.g1_A033 Stem Response Re... 64 1e-008
gb|DR692348.1|DR692348 EST1082436 Normalized pine embryo li... 64 1e-008
gb|DT637220.1|DT637220 EST1152151 Normalized pine embryo li... 64 1e-008
gb|BM133791.1|BM133791 NXLV_012_C09_F NXLV (Nsf Xylem Late ... 62 5e-008
gb|CF398578.1|CF398578 RTDS3_15_F05.g1_A022 Drought-stresse... 62 5e-008
gb|CF401692.1|CF401692 RTWW1_14_C08.b1_A015 Well-watered lo... 62 5e-008
gb|CF402516.1|CF402516 RTWW1_21_D11.b1_A015 Well-watered lo... 62 5e-008
gb|CF402851.1|CF402851 RTWW1_23_G02.b1_A015 Well-watered lo... 62 5e-008
gb|BX682865.1|BX682865 BX682865 Pinus pinaster differenciat... 62 5e-008
gb|CO176619.1|CO176619 NDL1_63_D10.b1_A029 Needles control ... 62 5e-008
gb|CO368006.1|CO368006 RTK1_38_C02.b1_A029 Roots minus pota... 62 5e-008
gb|CO368087.1|CO368087 RTK1_38_C02.g1_A029 Roots minus pota... 62 5e-008
gb|DN632311.1|DN632311 EST983127 Subtracted pine embryo lib... 62 5e-008
gb|DN633582.1|DN633582 EST984398 Subtracted pine embryo lib... 62 5e-008
gb|DR024929.1|DR024929 STRS1_68_A09.g1_A034 Shoot tip pitch... 62 5e-008
gb|DR025245.1|DR025245 STRS1_70_B03.g1_A034 Shoot tip pitch... 62 5e-008
gb|DR090487.1|DR090487 RTAL1_15_H06.b1_A029 Roots plus adde... 62 5e-008
gb|DR091932.1|DR091932 RTAL1_25_A05.b1_A029 Roots plus adde... 62 5e-008
gb|DN615294.1|DN615294 EST968344 Subtracted pine embryo lib... 58 8e-007
gb|DR688636.1|DR688636 EST1078721 Normalized pine embryo li... 58 8e-007
gb|DR053493.1|DR053493 RTCA1_11_B08.g1_A029 Roots minus cal... 54 1e-005
gb|CF672494.1|CF672494 RTCNT1_64_A12.b1_A029 Root control P... 52 5e-005
gb|CF672502.1|CF672502 RTCNT1_64_B12.b1_A029 Root control P... 52 5e-005
gb|CF672510.1|CF672510 RTCNT1_64_C12.b1_A029 Root control P... 52 5e-005
gb|CF672565.1|CF672565 RTCNT1_64_A12.g1_A029 Root control P... 52 5e-005
gb|CF672575.1|CF672575 RTCNT1_64_B12.g1_A029 Root control P... 52 5e-005
gb|CO157989.1|CO157989 FLD1_3_D11.g1_A029 Root flooded Pinu... 52 5e-005
gb|CO364168.1|CO364168 RTK1_14_C12.b1_A029 Roots minus pota... 52 5e-005
gb|CO365369.1|CO365369 RTK1_25_G04.b1_A029 Roots minus pota... 52 5e-005
gb|CO366095.1|CO366095 RTK1_25_G04.g1_A029 Roots minus pota... 52 5e-005
gb|DR101632.1|DR101632 STRR1_74_E09.g1_A033 Stem Response R... 52 5e-005
gb|DR684847.1|DR684847 EST1074924 Normalized pine embryo li... 52 5e-005
gb|DT632279.1|DT632279 EST1147210 Normalized pine embryo li... 52 5e-005
gb|CF389556.1|CF389556 RTDR2_8_D04.b1_A021 Loblolly pine ro... 48 8e-004
gb|CF397514.1|CF397514 RTDS3_4_B09.b2_A022 Drought-stressed... 48 8e-004
gb|CO367925.1|CO367925 RTK1_37_C03.g1_A029 Roots minus pota... 48 8e-004
gb|DR685606.1|DR685606 EST1075683 Normalized pine embryo li... 40 0.20
gb|DT633058.1|DT633058 EST1147989 Normalized pine embryo li... 40 0.20
>gb|CF398158.1|CF398158 RTDS3_21_F07.g1_A022 Drought-stressed loblolly pine roots DS3 Pinus
taeda cDNA clone RTDS3_21_F07_A022 5', mRNA sequence
Length = 406
Score = 105 bits (53), Expect = 4e-021
Identities = 152/185 (82%)
Strand = Plus / Minus
Query: 662 tcatcattagaagactcaatgtctaagatgagatcaagtgcataatcataatatggcacc 721
||||||||||| ||||| | || || || || ||||||||||||||||| ||||| ||
Sbjct: 388 tcatcattagatgactccacatccaaaatcaggtcaagtgcataatcatagtatggaact 329
Query: 722 tgattactcagaccacacaggttaaaatcatcctgtatatagtcatcatcgatctcacaa 781
|| |||| || ||||| ||||| ||||||||||| || || |||||||| | ||||||
Sbjct: 328 tggctactaagtccacaaaggttgaaatcatcctgaatgtactcatcatcaacttcacaa 269
Query: 782 aagaattcattgcctcgcaatgtacagaaccatgaaatccaggacgtgtcctctccctcg 841
||||| |||||||||| || ||||||||||| || |||||||| ||||| ||||| ||
Sbjct: 268 aagaactcattgcctcttaaagtacagaaccaagagatccaggatgtgtcatctccatca 209
Query: 842 gaacc 846
|||||
Sbjct: 208 gaacc 204
>gb|BG039333.1|BG039333 NXSI_097_H05_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_097_H05 5' similar to Arabidopsis thaliana
sequence At2g44680 putative casein kinase II beta
subunit see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 536
Score = 101 bits (51), Expect = 6e-020
Identities = 165/203 (81%)
Strand = Plus / Minus
Query: 662 tcatcattagaagactcaatgtctaagatgagatcaagtgcataatcataatatggcacc 721
||||||||||| ||||| | || || || || ||||||||||||||||| ||||| ||
Sbjct: 217 tcatcattagatgactccacatccaaaatcaggtcaagtgcataatcatagtatggaact 158
Query: 722 tgattactcagaccacacaggttaaaatcatcctgtatatagtcatcatcgatctcacaa 781
|| |||| || ||||| ||||| ||||||||||| || || |||||||| | ||||||
Sbjct: 157 tggctactaagtccacaaaggttgaaatcatcctgaatgtactcatcatcaacttcacaa 98
Query: 782 aagaattcattgcctcgcaatgtacagaaccatgaaatccaggacgtgtcctctccctcg 841
||||| |||||||||| || |||||||||| || |||||||| ||||| ||||| ||
Sbjct: 97 aagaactcattgcctcttaaattacagaaccaagagatccaggatgtgtcatctccatca 38
Query: 842 gaaccactcacatcagaatcttc 864
||||| || ||||| || |||||
Sbjct: 37 gaaccgctgacatctgattcttc 15
Score = 61.9 bits (31), Expect = 5e-008
Identities = 88/107 (82%)
Strand = Plus / Minus
Query: 350 agatgagggaatgtcgtcccaaagtatgatccatcgatgttgccttggtacttggatctt 409
|||||||| ||||| || || || |||| ||||||| | |||||||| ||||| ||||||
Sbjct: 529 agatgaggaaatgtggttccgaaatatgctccatcggtattgccttgatacttcgatctt 470
Query: 410 ggatagttaagttcttcgcatttcggacaatatatcttcacagtgct 456
||||||| || ||||| || || ||||| || |||||||| |||||
Sbjct: 469 ggatagtaaacatcttcacactttggacagtaaatcttcactgtgct 423
>gb|BG317931.1|BG317931 NXPV_007_D11_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_007_D11 5' similar to Arabidopsis
thaliana sequence At4g17640 casein kinase II beta chain
CKB2 see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 577
Score = 101 bits (51), Expect = 6e-020
Identities = 165/203 (81%)
Strand = Plus / Minus
Query: 662 tcatcattagaagactcaatgtctaagatgagatcaagtgcataatcataatatggcacc 721
||||||||||| ||||| | || || || || ||||||||||||||||| ||||| ||
Sbjct: 291 tcatcattagatgactccacatccaaaatcaggtcaagtgcataatcatagtatggaact 232
Query: 722 tgattactcagaccacacaggttaaaatcatcctgtatatagtcatcatcgatctcacaa 781
|| |||| || ||||| ||||| ||||||||||| || || |||||||| | ||||||
Sbjct: 231 tggctactaagtccacaaaggttgaaatcatcctgaatgtactcatcatcaacttcacaa 172
Query: 782 aagaattcattgcctcgcaatgtacagaaccatgaaatccaggacgtgtcctctccctcg 841
||||| |||||||||| || |||||||||| || |||||||| ||||| ||||| ||
Sbjct: 171 aagaactcattgcctcttaaattacagaaccaagagatccaggatgtgtcatctccatca 112
Query: 842 gaaccactcacatcagaatcttc 864
||||| || ||||| || |||||
Sbjct: 111 gaaccgctgacatctgattcttc 89
>gb|BG317951.1|BG317951 NXPV_007_G05_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_007_G05 5' similar to Arabidopsis
thaliana sequence At4g17640 casein kinase II beta chain
CKB2 see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 550
Score = 101 bits (51), Expect = 6e-020
Identities = 165/203 (81%)
Strand = Plus / Minus
Query: 662 tcatcattagaagactcaatgtctaagatgagatcaagtgcataatcataatatggcacc 721
||||||||||| ||||| | || || || || ||||||||||||||||| ||||| ||
Sbjct: 291 tcatcattagatgactccacatccaaaatcaggtcaagtgcataatcatagtatggaact 232
Query: 722 tgattactcagaccacacaggttaaaatcatcctgtatatagtcatcatcgatctcacaa 781
|| |||| || ||||| ||||| ||||||||||| || || |||||||| | ||||||
Sbjct: 231 tggctactaagtccacaaaggttgaaatcatcctgaatgtactcatcatcaacttcacaa 172
Query: 782 aagaattcattgcctcgcaatgtacagaaccatgaaatccaggacgtgtcctctccctcg 841
||||| |||||||||| || |||||||||| || |||||||| ||||| ||||| ||
Sbjct: 171 aagaactcattgcctcttaaattacagaaccaagagatccaggatgtgtcatctccatca 112
Query: 842 gaaccactcacatcagaatcttc 864
||||| || ||||| || |||||
Sbjct: 111 gaaccgctgacatctgattcttc 89
>gb|BG318137.1|BG318137 NXPV_010_H05_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_010_H05 5' similar to Arabidopsis
thaliana sequence At4g17640 casein kinase II beta chain
CKB2 see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 557
Score = 101 bits (51), Expect = 6e-020
Identities = 165/203 (81%)
Strand = Plus / Minus
Query: 662 tcatcattagaagactcaatgtctaagatgagatcaagtgcataatcataatatggcacc 721
||||||||||| ||||| | || || || || ||||||||||||||||| ||||| ||
Sbjct: 291 tcatcattagatgactccacatccaaaatcaggtcaagtgcataatcatagtatggaact 232
Query: 722 tgattactcagaccacacaggttaaaatcatcctgtatatagtcatcatcgatctcacaa 781
|| |||| || ||||| ||||| ||||||||||| || || |||||||| | ||||||
Sbjct: 231 tggctactaagtccacaaaggttgaaatcatcctgaatgtactcatcatcaacttcacaa 172
Query: 782 aagaattcattgcctcgcaatgtacagaaccatgaaatccaggacgtgtcctctccctcg 841
||||| |||||||||| || |||||||||| || |||||||| ||||| ||||| ||
Sbjct: 171 aagaactcattgcctcttaaattacagaaccaagagatccaggatgtgtcatctccatca 112
Query: 842 gaaccactcacatcagaatcttc 864
||||| || ||||| || |||||
Sbjct: 111 gaaccgctgacatctgattcttc 89
>gb|BQ698130.1|BQ698130 NXPV_064_H04_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_064_H04 5' similar to Arabidopsis
thaliana sequence At4g17640 casein kinase II beta chain
CKB2 see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 512
Score = 101 bits (51), Expect = 6e-020
Identities = 165/203 (81%)
Strand = Plus / Minus
Query: 662 tcatcattagaagactcaatgtctaagatgagatcaagtgcataatcataatatggcacc 721
||||||||||| ||||| | || || || || ||||||||||||||||| ||||| ||
Sbjct: 291 tcatcattagatgactccacatccaaaatcaggtcaagtgcataatcatagtatggaact 232
Query: 722 tgattactcagaccacacaggttaaaatcatcctgtatatagtcatcatcgatctcacaa 781
|| |||| || ||||| ||||| ||||||||||| || || |||||||| | ||||||
Sbjct: 231 tggctactaagtccacaaaggttgaaatcatcctgaatgtactcatcatcaacttcacaa 172
Query: 782 aagaattcattgcctcgcaatgtacagaaccatgaaatccaggacgtgtcctctccctcg 841
||||| |||||||||| || |||||||||| || |||||||| ||||| ||||| ||
Sbjct: 171 aagaactcattgcctcttaaattacagaaccaagagatccaggatgtgtcatctccatca 112
Query: 842 gaaccactcacatcagaatcttc 864
||||| || ||||| || |||||
Sbjct: 111 gaaccgctgacatctgattcttc 89
>gb|CF389668.1|CF389668 RTDR2_8_D04.g1_A021 Loblolly pine roots recovering from drought DR2
Pinus taeda cDNA clone RTDR2_8_D04_A021 5', mRNA
sequence
Length = 630
Score = 101 bits (51), Expect = 6e-020
Identities = 165/203 (81%)
Strand = Plus / Minus
Query: 662 tcatcattagaagactcaatgtctaagatgagatcaagtgcataatcataatatggcacc 721
||||||||||| ||||| | || || || || ||||||||||||||||| ||||| ||
Sbjct: 613 tcatcattagatgactccacatccaaaatcaggtcaagtgcataatcatagtatggaact 554
Query: 722 tgattactcagaccacacaggttaaaatcatcctgtatatagtcatcatcgatctcacaa 781
|| |||| || ||||| ||||| ||||||||||| || || |||||||| | ||||||
Sbjct: 553 tggctactaagtccacaaaggttgaaatcatcctgaatgtactcatcatcaacttcacaa 494
Query: 782 aagaattcattgcctcgcaatgtacagaaccatgaaatccaggacgtgtcctctccctcg 841
||||| |||||||||| || |||||||||| || |||||||| ||||| ||||| ||
Sbjct: 493 aagaactcattgcctcttaaattacagaaccaagagatccaggatgtgtcatctccatca 434
Query: 842 gaaccactcacatcagaatcttc 864
||||| || ||||| || |||||
Sbjct: 433 gaaccgctgacatctgattcttc 411
>gb|CF401229.1|CF401229 RTWW1_11_G01.b1_A015 Well-watered loblolly pine roots WW1 Pinus
taeda cDNA clone RTWW1_11_G01_A015 3', mRNA sequence
Length = 320
Score = 101 bits (51), Expect = 6e-020
Identities = 165/203 (81%)
Strand = Plus / Plus
Query: 662 tcatcattagaagactcaatgtctaagatgagatcaagtgcataatcataatatggcacc 721
||||||||||| ||||| | || || || || ||||||||||||||||| ||||| ||
Sbjct: 11 tcatcattagatgactccacatccaaaatcaggtcaagtgcataatcatagtatggaact 70
Query: 722 tgattactcagaccacacaggttaaaatcatcctgtatatagtcatcatcgatctcacaa 781
|| |||| || ||||| ||||| ||||||||||| || || |||||||| | ||||||
Sbjct: 71 tggctactaagtccacaaaggttgaaatcatcctgaatgtactcatcatcaacttcacaa 130
Query: 782 aagaattcattgcctcgcaatgtacagaaccatgaaatccaggacgtgtcctctccctcg 841
||||| |||||||||| || |||||||||| || |||||||| ||||| ||||| ||
Sbjct: 131 aagaactcattgcctcttaaattacagaaccaagagatccaggatgtgtcatctccatca 190
Query: 842 gaaccactcacatcagaatcttc 864
||||| || ||||| || |||||
Sbjct: 191 gaaccgctgacatctgattcttc 213
>gb|CF401717.1|CF401717 RTWW1_14_C08.g1_A015 Well-watered loblolly pine roots WW1 Pinus
taeda cDNA clone RTWW1_14_C08_A015 5', mRNA sequence
Length = 847
Score = 101 bits (51), Expect = 6e-020
Identities = 165/203 (81%)
Strand = Plus / Minus
Query: 662 tcatcattagaagactcaatgtctaagatgagatcaagtgcataatcataatatggcacc 721
||||||||||| ||||| | || || || || ||||||||||||||||| ||||| ||
Sbjct: 403 tcatcattagatgactccacatccaaaatcaggtcaagtgcataatcatagtatggaact 344
Query: 722 tgattactcagaccacacaggttaaaatcatcctgtatatagtcatcatcgatctcacaa 781
|| |||| || ||||| ||||| ||||||||||| || || |||||||| | ||||||
Sbjct: 343 tggctactaagtccacaaaggttgaaatcatcctgaatgtactcatcatcaacttcacaa 284
Query: 782 aagaattcattgcctcgcaatgtacagaaccatgaaatccaggacgtgtcctctccctcg 841
||||| |||||||||| || |||||||||| || |||||||| ||||| ||||| ||
Sbjct: 283 aagaactcattgcctcttaaattacagaaccaagagatccaggatgtgtcatctccatca 224
Query: 842 gaaccactcacatcagaatcttc 864
||||| || ||||| || |||||
Sbjct: 223 gaaccgctgacatctgattcttc 201
Score = 61.9 bits (31), Expect = 5e-008
Identities = 88/107 (82%)
Strand = Plus / Minus
Query: 350 agatgagggaatgtcgtcccaaagtatgatccatcgatgttgccttggtacttggatctt 409
|||||||| ||||| || || || |||| ||||||| | |||||||| ||||| ||||||
Sbjct: 715 agatgaggaaatgtggttccgaaatatgctccatcggtattgccttgatacttcgatctt 656
Query: 410 ggatagttaagttcttcgcatttcggacaatatatcttcacagtgct 456
||||||| || ||||| || || ||||| || |||||||| |||||
Sbjct: 655 ggatagtaaacatcttcacactttggacagtaaatcttcactgtgct 609
>gb|CF402018.1|CF402018 RTWW1_16_A09.g1_A015 Well-watered loblolly pine roots WW1 Pinus
taeda cDNA clone RTWW1_16_A09_A015 5', mRNA sequence
Length = 760
Score = 101 bits (51), Expect = 6e-020
Identities = 165/203 (81%)
Strand = Plus / Minus
Query: 662 tcatcattagaagactcaatgtctaagatgagatcaagtgcataatcataatatggcacc 721
||||||||||| ||||| | || || || || ||||||||||||||||| ||||| ||
Sbjct: 298 tcatcattagatgactccacatccaaaatcaggtcaagtgcataatcatagtatggaact 239
Query: 722 tgattactcagaccacacaggttaaaatcatcctgtatatagtcatcatcgatctcacaa 781
|| |||| || ||||| ||||| ||||||||||| || || |||||||| | ||||||
Sbjct: 238 tggctactaagtccacaaaggttgaaatcatcctgaatgtactcatcatcaacttcacaa 179
Query: 782 aagaattcattgcctcgcaatgtacagaaccatgaaatccaggacgtgtcctctccctcg 841
||||| |||||||||| || |||||||||| || |||||||| ||||| ||||| ||
Sbjct: 178 aagaactcattgcctcttaaattacagaaccaagagatccaggatgtgtcatctccatca 119
Query: 842 gaaccactcacatcagaatcttc 864
||||| || ||||| || |||||
Sbjct: 118 gaaccgctgacatctgattcttc 96
Score = 61.9 bits (31), Expect = 5e-008
Identities = 88/107 (82%)
Strand = Plus / Minus
Query: 350 agatgagggaatgtcgtcccaaagtatgatccatcgatgttgccttggtacttggatctt 409
|||||||| ||||| || || || |||| ||||||| | |||||||| ||||| ||||||
Sbjct: 610 agatgaggaaatgtggttccgaaatatgctccatcggtattgccttgatacttcgatctt 551
Query: 410 ggatagttaagttcttcgcatttcggacaatatatcttcacagtgct 456
||||||| || ||||| || || ||||| || |||||||| |||||
Sbjct: 550 ggatagtaaacatcttcacactttggacagtaaatcttcactgtgct 504
>gb|CF402602.1|CF402602 RTWW1_21_D11.g1_A015 Well-watered loblolly pine roots WW1 Pinus
taeda cDNA clone RTWW1_21_D11_A015 5', mRNA sequence
Length = 726
Score = 101 bits (51), Expect = 6e-020
Identities = 165/203 (81%)
Strand = Plus / Minus
Query: 662 tcatcattagaagactcaatgtctaagatgagatcaagtgcataatcataatatggcacc 721
||||||||||| ||||| | || || || || ||||||||||||||||| ||||| ||
Sbjct: 716 tcatcattagatgactccacatccaaaatcaggtcaagtgcataatcatagtatggaact 657
Query: 722 tgattactcagaccacacaggttaaaatcatcctgtatatagtcatcatcgatctcacaa 781
|| |||| || ||||| ||||| ||||||||||| || || |||||||| | ||||||
Sbjct: 656 tggctactaagtccacaaaggttgaaatcatcctgaatgtactcatcatcaacttcacaa 597
Query: 782 aagaattcattgcctcgcaatgtacagaaccatgaaatccaggacgtgtcctctccctcg 841
||||| |||||||||| || |||||||||| || |||||||| ||||| ||||| ||
Sbjct: 596 aagaactcattgcctcttaaattacagaaccaagagatccaggatgtgtcatctccatca 537
Query: 842 gaaccactcacatcagaatcttc 864
||||| || ||||| || |||||
Sbjct: 536 gaaccgctgacatctgattcttc 514
>gb|CF402933.1|CF402933 RTWW1_23_G02.g1_A015 Well-watered loblolly pine roots WW1 Pinus
taeda cDNA clone RTWW1_23_G02_A015 5', mRNA sequence
Length = 517
Score = 101 bits (51), Expect = 6e-020
Identities = 165/203 (81%)
Strand = Plus / Minus
Query: 662 tcatcattagaagactcaatgtctaagatgagatcaagtgcataatcataatatggcacc 721
||||||||||| ||||| | || || || || ||||||||||||||||| ||||| ||
Sbjct: 308 tcatcattagatgactccacatccaaaatcaggtcaagtgcataatcatagtatggaact 249
Query: 722 tgattactcagaccacacaggttaaaatcatcctgtatatagtcatcatcgatctcacaa 781
|| |||| || ||||| ||||| ||||||||||| || || |||||||| | ||||||
Sbjct: 248 tggctactaagtccacaaaggttgaaatcatcctgaatgtactcatcatcaacttcacaa 189
Query: 782 aagaattcattgcctcgcaatgtacagaaccatgaaatccaggacgtgtcctctccctcg 841
||||| |||||||||| || |||||||||| || |||||||| ||||| ||||| ||
Sbjct: 188 aagaactcattgcctcttaaattacagaaccaagagatccaggatgtgtcatctccatca 129
Query: 842 gaaccactcacatcagaatcttc 864
||||| || ||||| || |||||
Sbjct: 128 gaaccgctgacatctgattcttc 106
>gb|CN784761.1|CN784761 EST783452 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone PIAAQ21 5' end, mRNA sequence
Length = 889
Score = 101 bits (51), Expect = 6e-020
Identities = 165/203 (81%)
Strand = Plus / Minus
Query: 662 tcatcattagaagactcaatgtctaagatgagatcaagtgcataatcataatatggcacc 721
||||||||||| ||||| | || || || || ||||||||||||||||| ||||| ||
Sbjct: 434 tcatcattagatgactccacatccaaaatcaggtcaagtgcataatcatagtatggaact 375
Query: 722 tgattactcagaccacacaggttaaaatcatcctgtatatagtcatcatcgatctcacaa 781
|| |||| || ||||| ||||| ||||||||||| || || |||||||| | ||||||
Sbjct: 374 tggctactaagtccacaaaggttgaaatcatcctgaatgtactcatcatcaacttcacaa 315
Query: 782 aagaattcattgcctcgcaatgtacagaaccatgaaatccaggacgtgtcctctccctcg 841
||||| |||||||||| || |||||||||| || |||||||| ||||| ||||| ||
Sbjct: 314 aagaactcattgcctcttaaattacagaaccaagagatccaggatgtgtcatctccatca 255
Query: 842 gaaccactcacatcagaatcttc 864
||||| || ||||| || |||||
Sbjct: 254 gaaccgctgacatctgattcttc 232
Score = 61.9 bits (31), Expect = 5e-008
Identities = 88/107 (82%)
Strand = Plus / Minus
Query: 350 agatgagggaatgtcgtcccaaagtatgatccatcgatgttgccttggtacttggatctt 409
|||||||| ||||| || || || |||| ||||||| | |||||||| ||||| ||||||
Sbjct: 746 agatgaggaaatgtggttccgaaatatgctccatcggtattgccttgatacttcgatctt 687
Query: 410 ggatagttaagttcttcgcatttcggacaatatatcttcacagtgct 456
||||||| || ||||| || || ||||| || |||||||| |||||
Sbjct: 686 ggatagtaaacatcttcacactttggacagtaaatcttcactgtgct 640
>gb|CN784778.1|CN784778 EST783469 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone PIAAQ44 5' end, mRNA sequence
Length = 909
Score = 101 bits (51), Expect = 6e-020
Identities = 165/203 (81%)
Strand = Plus / Minus
Query: 662 tcatcattagaagactcaatgtctaagatgagatcaagtgcataatcataatatggcacc 721
||||||||||| ||||| | || || || || ||||||||||||||||| ||||| ||
Sbjct: 548 tcatcattagatgactccacatccaaaatcaggtcaagtgcataatcatagtatggaact 489
Query: 722 tgattactcagaccacacaggttaaaatcatcctgtatatagtcatcatcgatctcacaa 781
|| |||| || ||||| ||||| ||||||||||| || || |||||||| | ||||||
Sbjct: 488 tggctactaagtccacaaaggttgaaatcatcctgaatgtactcatcatcaacttcacaa 429
Query: 782 aagaattcattgcctcgcaatgtacagaaccatgaaatccaggacgtgtcctctccctcg 841
||||| |||||||||| || |||||||||| || |||||||| ||||| ||||| ||
Sbjct: 428 aagaactcattgcctcttaaattacagaaccaagagatccaggatgtgtcatctccatca 369
Query: 842 gaaccactcacatcagaatcttc 864
||||| || ||||| || |||||
Sbjct: 368 gaaccgctgacatctgattcttc 346
Score = 61.9 bits (31), Expect = 5e-008
Identities = 88/107 (82%)
Strand = Plus / Minus
Query: 350 agatgagggaatgtcgtcccaaagtatgatccatcgatgttgccttggtacttggatctt 409
|||||||| ||||| || || || |||| ||||||| | |||||||| ||||| ||||||
Sbjct: 860 agatgaggaaatgtggttccgaaatatgctccatcggtattgccttgatacttcgatctt 801
Query: 410 ggatagttaagttcttcgcatttcggacaatatatcttcacagtgct 456
||||||| || ||||| || || ||||| || |||||||| |||||
Sbjct: 800 ggatagtaaacatcttcacactttggacagtaaatcttcactgtgct 754
>gb|CO159784.1|CO159784 FLD1_15_H03.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_15_H03_A029 5', mRNA sequence
Length = 821
Score = 101 bits (51), Expect = 6e-020
Identities = 165/203 (81%)
Strand = Plus / Minus
Query: 662 tcatcattagaagactcaatgtctaagatgagatcaagtgcataatcataatatggcacc 721
||||||||||| ||||| | || || || || ||||||||||||||||| ||||| ||
Sbjct: 454 tcatcattagatgactccacatccaaaatcaggtcaagtgcataatcatagtatggaact 395
Query: 722 tgattactcagaccacacaggttaaaatcatcctgtatatagtcatcatcgatctcacaa 781
|| |||| || ||||| ||||| ||||||||||| || || |||||||| | ||||||
Sbjct: 394 tggctactaagtccacaaaggttgaaatcatcctgaatgtactcatcatcaacttcacaa 335
Query: 782 aagaattcattgcctcgcaatgtacagaaccatgaaatccaggacgtgtcctctccctcg 841
||||| |||||||||| || |||||||||| || |||||||| ||||| ||||| ||
Sbjct: 334 aagaactcattgcctcttaaattacagaaccaagagatccaggatgtgtcatctccatca 275
Query: 842 gaaccactcacatcagaatcttc 864
||||| || ||||| || |||||
Sbjct: 274 gaaccgctgacatctgattcttc 252
Score = 48.1 bits (24), Expect = 8e-004
Identities = 57/68 (83%)
Strand = Plus / Minus
Query: 389 ttgccttggtacttggatcttggatagttaagttcttcgcatttcggacaatatatcttc 448
|||||||| ||||| ||||||||||||| || ||||| || || ||||| || ||||||
Sbjct: 727 ttgccttgatacttcgatcttggatagtaaacatcttcacactttggacagtaaatcttc 668
Query: 449 acagtgct 456
|| |||||
Sbjct: 667 actgtgct 660
>gb|CO163029.1|CO163029 FLD1_39_B07.b1_A029 Root flooded Pinus taeda cDNA clone
FLD1_39_B07_A029 3', mRNA sequence
Length = 861
Score = 101 bits (51), Expect = 6e-020
Identities = 165/203 (81%)
Strand = Plus / Minus
Query: 662 tcatcattagaagactcaatgtctaagatgagatcaagtgcataatcataatatggcacc 721
||||||||||| ||||| | || || || || ||||||||||||||||| ||||| ||
Sbjct: 268 tcatcattagatgactccacatccaaaatcaggtcaagtgcataatcatagtatggaact 209
Query: 722 tgattactcagaccacacaggttaaaatcatcctgtatatagtcatcatcgatctcacaa 781
|| |||| || ||||| ||||| ||||||||||| || || |||||||| | ||||||
Sbjct: 208 tggctactaagtccacaaaggttgaaatcatcctgaatgtactcatcatcaacttcacaa 149
Query: 782 aagaattcattgcctcgcaatgtacagaaccatgaaatccaggacgtgtcctctccctcg 841
||||| |||||||||| || |||||||||| || |||||||| ||||| ||||| ||
Sbjct: 148 aagaactcattgcctcttaaattacagaaccaagagatccaggatgtgtcatctccatca 89
Query: 842 gaaccactcacatcagaatcttc 864
||||| || ||||| || |||||
Sbjct: 88 gaaccgctgacatctgattcttc 66
Score = 48.1 bits (24), Expect = 8e-004
Identities = 57/68 (83%)
Strand = Plus / Minus
Query: 389 ttgccttggtacttggatcttggatagttaagttcttcgcatttcggacaatatatcttc 448
|||||||| ||||| ||||||||||||| || ||||| || || ||||| || ||||||
Sbjct: 541 ttgccttgatacttcgatcttggatagtaaacatcttcacactttggacagtaaatcttc 482
Query: 449 acagtgct 456
|| |||||
Sbjct: 481 actgtgct 474
>gb|CO163108.1|CO163108 FLD1_39_B07.g1_A029 Root flooded Pinus taeda cDNA clone
FLD1_39_B07_A029 5', mRNA sequence
Length = 888
Score = 101 bits (51), Expect = 6e-020
Identities = 165/203 (81%)
Strand = Plus / Minus
Query: 662 tcatcattagaagactcaatgtctaagatgagatcaagtgcataatcataatatggcacc 721
||||||||||| ||||| | || || || || ||||||||||||||||| ||||| ||
Sbjct: 420 tcatcattagatgactccacatccaaaatcaggtcaagtgcataatcatagtatggaact 361
Query: 722 tgattactcagaccacacaggttaaaatcatcctgtatatagtcatcatcgatctcacaa 781
|| |||| || ||||| ||||| ||||||||||| || || |||||||| | ||||||
Sbjct: 360 tggctactaagtccacaaaggttgaaatcatcctgaatgtactcatcatcaacttcacaa 301
Query: 782 aagaattcattgcctcgcaatgtacagaaccatgaaatccaggacgtgtcctctccctcg 841
||||| |||||||||| || |||||||||| || |||||||| ||||| ||||| ||
Sbjct: 300 aagaactcattgcctcttaaattacagaaccaagagatccaggatgtgtcatctccatca 241
Query: 842 gaaccactcacatcagaatcttc 864
||||| || ||||| || |||||
Sbjct: 240 gaaccgctgacatctgattcttc 218
Score = 48.1 bits (24), Expect = 8e-004
Identities = 57/68 (83%)
Strand = Plus / Minus
Query: 389 ttgccttggtacttggatcttggatagttaagttcttcgcatttcggacaatatatcttc 448
|||||||| ||||| ||||||||||||| || ||||| || || ||||| || ||||||
Sbjct: 693 ttgccttgatacttcgatcttggatagtaaacatcttcacactttggacagtaaatcttc 634
Query: 449 acagtgct 456
|| |||||
Sbjct: 633 actgtgct 626
>gb|CO176699.1|CO176699 NDL1_63_D10.g1_A029 Needles control Pinus taeda cDNA clone
NDL1_63_D10_A029 5', mRNA sequence
Length = 781
Score = 101 bits (51), Expect = 6e-020
Identities = 165/203 (81%)
Strand = Plus / Minus
Query: 662 tcatcattagaagactcaatgtctaagatgagatcaagtgcataatcataatatggcacc 721
||||||||||| ||||| | || || || || ||||||||||||||||| ||||| ||
Sbjct: 689 tcatcattagatgactccacatccaaaatcaggtcaagtgcataatcatagtatggaact 630
Query: 722 tgattactcagaccacacaggttaaaatcatcctgtatatagtcatcatcgatctcacaa 781
|| |||| || ||||| ||||| ||||||||||| || || |||||||| | ||||||
Sbjct: 629 tggctactaagtccacaaaggttgaaatcatcctgaatgtactcatcatcaacttcacaa 570
Query: 782 aagaattcattgcctcgcaatgtacagaaccatgaaatccaggacgtgtcctctccctcg 841
||||| |||||||||| || |||||||||| || |||||||| ||||| ||||| ||
Sbjct: 569 aagaactcattgcctcttaaattacagaaccaagagatccaggatgtgtcatctccatca 510
Query: 842 gaaccactcacatcagaatcttc 864
||||| || ||||| || |||||
Sbjct: 509 gaaccgctgacatctgattcttc 487
>gb|CO409013.1|CO409013 EST839398 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone PIAKK24 5' end, mRNA sequence
Length = 958
Score = 101 bits (51), Expect = 6e-020
Identities = 165/203 (81%)
Strand = Plus / Minus
Query: 662 tcatcattagaagactcaatgtctaagatgagatcaagtgcataatcataatatggcacc 721
||||||||||| ||||| | || || || || ||||||||||||||||| ||||| ||
Sbjct: 727 tcatcattagatgactccacatccaaaatcaggtcaagtgcataatcatagtatggaact 668
Query: 722 tgattactcagaccacacaggttaaaatcatcctgtatatagtcatcatcgatctcacaa 781
|| |||| || ||||| ||||| ||||||||||| || || |||||||| | ||||||
Sbjct: 667 tggctactaagtccacaaaggttgaaatcatcctgaatgtactcatcatcaacttcacaa 608
Query: 782 aagaattcattgcctcgcaatgtacagaaccatgaaatccaggacgtgtcctctccctcg 841
||||| |||||||||| || |||||||||| || |||||||| ||||| ||||| ||
Sbjct: 607 aagaactcattgcctcttaaattacagaaccaagagatccaggatgtgtcatctccatca 548
Query: 842 gaaccactcacatcagaatcttc 864
||||| || ||||| || |||||
Sbjct: 547 gaaccgctgacatctgattcttc 525
>gb|CO414085.1|CO414085 EST844470 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone PIAMJ59 5' end, mRNA sequence
Length = 760
Score = 101 bits (51), Expect = 6e-020
Identities = 165/203 (81%)
Strand = Plus / Minus
Query: 662 tcatcattagaagactcaatgtctaagatgagatcaagtgcataatcataatatggcacc 721
||||||||||| ||||| | || || || || ||||||||||||||||| ||||| ||
Sbjct: 727 tcatcattagatgactccacatccaaaatcaggtcaagtgcataatcatagtatggaact 668
Query: 722 tgattactcagaccacacaggttaaaatcatcctgtatatagtcatcatcgatctcacaa 781
|| |||| || ||||| ||||| ||||||||||| || || |||||||| | ||||||
Sbjct: 667 tggctactaagtccacaaaggttgaaatcatcctgaatgtactcatcatcaacttcacaa 608
Query: 782 aagaattcattgcctcgcaatgtacagaaccatgaaatccaggacgtgtcctctccctcg 841
||||| |||||||||| || |||||||||| || |||||||| ||||| ||||| ||
Sbjct: 607 aagaactcattgcctcttaaattacagaaccaagagatccaggatgtgtcatctccatca 548
Query: 842 gaaccactcacatcagaatcttc 864
||||| || ||||| || |||||
Sbjct: 547 gaaccgctgacatctgattcttc 525
>gb|CV137468.1|CV137468 EST848677 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone RPIAO87 5' end, mRNA sequence
Length = 850
Score = 101 bits (51), Expect = 6e-020
Identities = 165/203 (81%)
Strand = Plus / Minus
Query: 662 tcatcattagaagactcaatgtctaagatgagatcaagtgcataatcataatatggcacc 721
||||||||||| ||||| | || || || || ||||||||||||||||| ||||| ||
Sbjct: 588 tcatcattagatgactccacatccaaaatcaggtcaagtgcataatcatagtatggaact 529
Query: 722 tgattactcagaccacacaggttaaaatcatcctgtatatagtcatcatcgatctcacaa 781
|| |||| || ||||| ||||| ||||||||||| || || |||||||| | ||||||
Sbjct: 528 tggctactaagtccacaaaggttgaaatcatcctgaatgtactcatcatcaacttcacaa 469
Query: 782 aagaattcattgcctcgcaatgtacagaaccatgaaatccaggacgtgtcctctccctcg 841
||||| |||||||||| || |||||||||| || |||||||| ||||| ||||| ||
Sbjct: 468 aagaactcattgcctcttaaattacagaaccaagagatccaggatgtgtcatctccatca 409
Query: 842 gaaccactcacatcagaatcttc 864
||||| || ||||| || |||||
Sbjct: 408 gaaccgctgacatctgattcttc 386
>gb|CV146400.1|CV146400 EST857609 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone RPIDV92 5' end, mRNA sequence
Length = 863
Score = 101 bits (51), Expect = 6e-020
Identities = 165/203 (81%)
Strand = Plus / Minus
Query: 662 tcatcattagaagactcaatgtctaagatgagatcaagtgcataatcataatatggcacc 721
||||||||||| ||||| | || || || || ||||||||||||||||| ||||| ||
Sbjct: 748 tcatcattagatgactccacatccaaaatcaggtcaagtgcataatcatagtatggaact 689
Query: 722 tgattactcagaccacacaggttaaaatcatcctgtatatagtcatcatcgatctcacaa 781
|| |||| || ||||| ||||| ||||||||||| || || |||||||| | ||||||
Sbjct: 688 tggctactaagtccacaaaggttgaaatcatcctgaatgtactcatcatcaacttcacaa 629
Query: 782 aagaattcattgcctcgcaatgtacagaaccatgaaatccaggacgtgtcctctccctcg 841
||||| |||||||||| || |||||||||| || |||||||| ||||| ||||| ||
Sbjct: 628 aagaactcattgcctcttaaattacagaaccaagagatccaggatgtgtcatctccatca 569
Query: 842 gaaccactcacatcagaatcttc 864
||||| || ||||| || |||||
Sbjct: 568 gaaccgctgacatctgattcttc 546
>gb|CV146771.1|CV146771 EST857980 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone RPIE012 5' end, mRNA sequence
Length = 853
Score = 101 bits (51), Expect = 6e-020
Identities = 165/203 (81%)
Strand = Plus / Minus
Query: 662 tcatcattagaagactcaatgtctaagatgagatcaagtgcataatcataatatggcacc 721
||||||||||| ||||| | || || || || ||||||||||||||||| ||||| ||
Sbjct: 734 tcatcattagatgactccacatccaaaatcaggtcaagtgcataatcatagtatggaact 675
Query: 722 tgattactcagaccacacaggttaaaatcatcctgtatatagtcatcatcgatctcacaa 781
|| |||| || ||||| ||||| ||||||||||| || || |||||||| | ||||||
Sbjct: 674 tggctactaagtccacaaaggttgaaatcatcctgaatgtactcatcatcaacttcacaa 615
Query: 782 aagaattcattgcctcgcaatgtacagaaccatgaaatccaggacgtgtcctctccctcg 841
||||| |||||||||| || |||||||||| || |||||||| ||||| ||||| ||
Sbjct: 614 aagaactcattgcctcttaaattacagaaccaagagatccaggatgtgtcatctccatca 555
Query: 842 gaaccactcacatcagaatcttc 864
||||| || ||||| || |||||
Sbjct: 554 gaaccgctgacatctgattcttc 532
>gb|CX649065.1|CX649065 COLD1_32_F03.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_32_F03_A029 5', mRNA sequence
Length = 766
Score = 101 bits (51), Expect = 6e-020
Identities = 165/203 (81%)
Strand = Plus / Minus
Query: 662 tcatcattagaagactcaatgtctaagatgagatcaagtgcataatcataatatggcacc 721
||||||||||| ||||| | || || || || ||||||||||||||||| ||||| ||
Sbjct: 234 tcatcattagatgactccacatccaaaatcaggtcaagtgcataatcatagtatggaact 175
Query: 722 tgattactcagaccacacaggttaaaatcatcctgtatatagtcatcatcgatctcacaa 781
|| |||| || ||||| ||||| ||||||||||| || || |||||||| | ||||||
Sbjct: 174 tggctactaagtccacaaaggttgaaatcatcctgaatgtactcatcatcaacttcacaa 115
Query: 782 aagaattcattgcctcgcaatgtacagaaccatgaaatccaggacgtgtcctctccctcg 841
||||| |||||||||| || |||||||||| || |||||||| ||||| ||||| ||
Sbjct: 114 aagaactcattgcctcttaaattacagaaccaagagatccaggatgtgtcatctccatca 55
Query: 842 gaaccactcacatcagaatcttc 864
||||| || ||||| || |||||
Sbjct: 54 gaaccgctgacatctgattcttc 32
Score = 61.9 bits (31), Expect = 5e-008
Identities = 88/107 (82%)
Strand = Plus / Minus
Query: 350 agatgagggaatgtcgtcccaaagtatgatccatcgatgttgccttggtacttggatctt 409
|||||||| ||||| || || || |||| ||||||| | |||||||| ||||| ||||||
Sbjct: 546 agatgaggaaatgtggttccgaaatatgctccatcggtattgccttgatacttcgatctt 487
Query: 410 ggatagttaagttcttcgcatttcggacaatatatcttcacagtgct 456
||||||| || ||||| || || ||||| || |||||||| |||||
Sbjct: 486 ggatagtaaacatcttcacactttggacagtaaatcttcactgtgct 440
>gb|DN453630.1|DN453630 EST949429 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone RPIFU82 5' end, mRNA sequence
Length = 852
Score = 101 bits (51), Expect = 6e-020
Identities = 165/203 (81%)
Strand = Plus / Minus
Query: 662 tcatcattagaagactcaatgtctaagatgagatcaagtgcataatcataatatggcacc 721
||||||||||| ||||| | || || || || ||||||||||||||||| ||||| ||
Sbjct: 546 tcatcattagatgactccacatccaaaatcaggtcaagtgcataatcatagtatggaact 487
Query: 722 tgattactcagaccacacaggttaaaatcatcctgtatatagtcatcatcgatctcacaa 781
|| |||| || ||||| ||||| ||||||||||| || || |||||||| | ||||||
Sbjct: 486 tggctactaagtccacaaaggttgaaatcatcctgaatgtactcatcatcaacttcacaa 427
Query: 782 aagaattcattgcctcgcaatgtacagaaccatgaaatccaggacgtgtcctctccctcg 841
||||| |||||||||| || |||||||||| || |||||||| ||||| ||||| ||
Sbjct: 426 aagaactcattgcctcttaaattacagaaccaagagatccaggatgtgtcatctccatca 367
Query: 842 gaaccactcacatcagaatcttc 864
||||| || ||||| || |||||
Sbjct: 366 gaaccgctgacatctgattcttc 344
Score = 48.1 bits (24), Expect = 8e-004
Identities = 57/68 (83%)
Strand = Plus / Minus
Query: 389 ttgccttggtacttggatcttggatagttaagttcttcgcatttcggacaatatatcttc 448
|||||||| ||||| ||||||||||||| || ||||| || || ||||| || ||||||
Sbjct: 819 ttgccttgatacttcgatcttggatagtaaacatcttcacactttggacagtaaatcttc 760
Query: 449 acagtgct 456
|| |||||
Sbjct: 759 actgtgct 752
>gb|DN454863.1|DN454863 EST950662 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone RPIG814 5' end, mRNA sequence
Length = 782
Score = 101 bits (51), Expect = 6e-020
Identities = 165/203 (81%)
Strand = Plus / Minus
Query: 662 tcatcattagaagactcaatgtctaagatgagatcaagtgcataatcataatatggcacc 721
||||||||||| ||||| | || || || || ||||||||||||||||| ||||| ||
Sbjct: 747 tcatcattagatgactccacatccaaaatcaggtcaagtgcataatcatagtatggaact 688
Query: 722 tgattactcagaccacacaggttaaaatcatcctgtatatagtcatcatcgatctcacaa 781
|| |||| || ||||| ||||| ||||||||||| || || |||||||| | ||||||
Sbjct: 687 tggctactaagtccacaaaggttgaaatcatcctgaatgtactcatcatcaacttcacaa 628
Query: 782 aagaattcattgcctcgcaatgtacagaaccatgaaatccaggacgtgtcctctccctcg 841
||||| |||||||||| || |||||||||| || |||||||| ||||| ||||| ||
Sbjct: 627 aagaactcattgcctcttaaattacagaaccaagagatccaggatgtgtcatctccatca 568
Query: 842 gaaccactcacatcagaatcttc 864
||||| || ||||| || |||||
Sbjct: 567 gaaccgctgacatctgattcttc 545
>gb|DN458835.1|DN458835 EST954634 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone RPIHG33 5' end, mRNA sequence
Length = 948
Score = 101 bits (51), Expect = 6e-020
Identities = 165/203 (81%)
Strand = Plus / Minus
Query: 662 tcatcattagaagactcaatgtctaagatgagatcaagtgcataatcataatatggcacc 721
||||||||||| ||||| | || || || || ||||||||||||||||| ||||| ||
Sbjct: 681 tcatcattagatgactccacatccaaaatcaggtcaagtgcataatcatagtatggaact 622
Query: 722 tgattactcagaccacacaggttaaaatcatcctgtatatagtcatcatcgatctcacaa 781
|| |||| || ||||| ||||| ||||||||||| || || |||||||| | ||||||
Sbjct: 621 tggctactaagtccacaaaggttgaaatcatcctgaatgtactcatcatcaacttcacaa 562
Query: 782 aagaattcattgcctcgcaatgtacagaaccatgaaatccaggacgtgtcctctccctcg 841
||||| |||||||||| || |||||||||| || |||||||| ||||| ||||| ||
Sbjct: 561 aagaactcattgcctcttaaattacagaaccaagagatccaggatgtgtcatctccatca 502
Query: 842 gaaccactcacatcagaatcttc 864
||||| || ||||| || |||||
Sbjct: 501 gaaccgctgacatctgattcttc 479
>gb|DR012793.1|DR012793 HEAT1_15_C04.b1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_15_C04_A029 3', mRNA sequence
Length = 784
Score = 101 bits (51), Expect = 6e-020
Identities = 165/203 (81%)
Strand = Plus / Minus
Query: 662 tcatcattagaagactcaatgtctaagatgagatcaagtgcataatcataatatggcacc 721
||||||||||| ||||| | || || || || ||||||||||||||||| ||||| ||
Sbjct: 276 tcatcattagatgactccacatccaaaatcaggtcaagtgcataatcatagtatggaact 217
Query: 722 tgattactcagaccacacaggttaaaatcatcctgtatatagtcatcatcgatctcacaa 781
|| |||| || ||||| ||||| ||||||||||| || || |||||||| | ||||||
Sbjct: 216 tggctactaagtccacaaaggttgaaatcatcctgaatgtactcatcatcaacttcacaa 157
Query: 782 aagaattcattgcctcgcaatgtacagaaccatgaaatccaggacgtgtcctctccctcg 841
||||| |||||||||| || |||||||||| || |||||||| ||||| ||||| ||
Sbjct: 156 aagaactcattgcctcttaaattacagaaccaagagatccaggatgtgtcatctccatca 97
Query: 842 gaaccactcacatcagaatcttc 864
||||| || ||||| || |||||
Sbjct: 96 gaaccgctgacatctgattcttc 74
Score = 61.9 bits (31), Expect = 5e-008
Identities = 88/107 (82%)
Strand = Plus / Minus
Query: 350 agatgagggaatgtcgtcccaaagtatgatccatcgatgttgccttggtacttggatctt 409
|||||||| ||||| || || || |||| ||||||| | |||||||| ||||| ||||||
Sbjct: 588 agatgaggaaatgtggttccgaaatatgctccatcggtattgccttgatacttcgatctt 529
Query: 410 ggatagttaagttcttcgcatttcggacaatatatcttcacagtgct 456
||||||| || ||||| || || ||||| || |||||||| |||||
Sbjct: 528 ggatagtaaacatcttcacactttggacagtaaatcttcactgtgct 482
>gb|DR012876.1|DR012876 HEAT1_15_C04.g1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_15_C04_A029 5', mRNA sequence
Length = 775
Score = 101 bits (51), Expect = 6e-020
Identities = 165/203 (81%)
Strand = Plus / Minus
Query: 662 tcatcattagaagactcaatgtctaagatgagatcaagtgcataatcataatatggcacc 721
||||||||||| ||||| | || || || || ||||||||||||||||| ||||| ||
Sbjct: 334 tcatcattagatgactccacatccaaaatcaggtcaagtgcataatcatagtatggaact 275
Query: 722 tgattactcagaccacacaggttaaaatcatcctgtatatagtcatcatcgatctcacaa 781
|| |||| || ||||| ||||| ||||||||||| || || |||||||| | ||||||
Sbjct: 274 tggctactaagtccacaaaggttgaaatcatcctgaatgtactcatcatcaacttcacaa 215
Query: 782 aagaattcattgcctcgcaatgtacagaaccatgaaatccaggacgtgtcctctccctcg 841
||||| |||||||||| || |||||||||| || |||||||| ||||| ||||| ||
Sbjct: 214 aagaactcattgcctcttaaattacagaaccaagagatccaggatgtgtcatctccatca 155
Query: 842 gaaccactcacatcagaatcttc 864
||||| || ||||| || |||||
Sbjct: 154 gaaccgctgacatctgattcttc 132
Score = 61.9 bits (31), Expect = 5e-008
Identities = 88/107 (82%)
Strand = Plus / Minus
Query: 350 agatgagggaatgtcgtcccaaagtatgatccatcgatgttgccttggtacttggatctt 409
|||||||| ||||| || || || |||| ||||||| | |||||||| ||||| ||||||
Sbjct: 646 agatgaggaaatgtggttccgaaatatgctccatcggtattgccttgatacttcgatctt 587
Query: 410 ggatagttaagttcttcgcatttcggacaatatatcttcacagtgct 456
||||||| || ||||| || || ||||| || |||||||| |||||
Sbjct: 586 ggatagtaaacatcttcacactttggacagtaaatcttcactgtgct 540
>gb|DR016530.1|DR016530 STRS1_10_E01.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_10_E01_A034 5', mRNA sequence
Length = 798
Score = 101 bits (51), Expect = 6e-020
Identities = 165/203 (81%)
Strand = Plus / Minus
Query: 662 tcatcattagaagactcaatgtctaagatgagatcaagtgcataatcataatatggcacc 721
||||||||||| ||||| | || || || || ||||||||||||||||| ||||| ||
Sbjct: 720 tcatcattagatgactccacatccaaaatcaggtcaagtgcataatcatagtatggaact 661
Query: 722 tgattactcagaccacacaggttaaaatcatcctgtatatagtcatcatcgatctcacaa 781
|| |||| || ||||| ||||| ||||||||||| || || |||||||| | ||||||
Sbjct: 660 tggctactaagtccacaaaggttgaaatcatcctgaatgtactcatcatcaacttcacaa 601
Query: 782 aagaattcattgcctcgcaatgtacagaaccatgaaatccaggacgtgtcctctccctcg 841
||||| |||||||||| || |||||||||| || |||||||| ||||| ||||| ||
Sbjct: 600 aagaactcattgcctcttaaattacagaaccaagagatccaggatgtgtcatctccatca 541
Query: 842 gaaccactcacatcagaatcttc 864
||||| || ||||| || |||||
Sbjct: 540 gaaccgctgacatctgattcttc 518
>gb|DR020451.1|DR020451 STRS1_37_C11.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_37_C11_A034 3', mRNA sequence
Length = 856
Score = 101 bits (51), Expect = 6e-020
Identities = 165/203 (81%)
Strand = Plus / Plus
Query: 662 tcatcattagaagactcaatgtctaagatgagatcaagtgcataatcataatatggcacc 721
||||||||||| ||||| | || || || || ||||||||||||||||| ||||| ||
Sbjct: 494 tcatcattagatgactccacatccaaaatcaggtcaagtgcataatcatagtatggaact 553
Query: 722 tgattactcagaccacacaggttaaaatcatcctgtatatagtcatcatcgatctcacaa 781
|| |||| || ||||| ||||| ||||||||||| || || |||||||| | ||||||
Sbjct: 554 tggctactaagtccacaaaggttgaaatcatcctgaatgtactcatcatcaacttcacaa 613
Query: 782 aagaattcattgcctcgcaatgtacagaaccatgaaatccaggacgtgtcctctccctcg 841
||||| |||||||||| || |||||||||| || |||||||| ||||| ||||| ||
Sbjct: 614 aagaactcattgcctcttaaattacagaaccaagagatccaggatgtgtcatctccatca 673
Query: 842 gaaccactcacatcagaatcttc 864
||||| || ||||| || |||||
Sbjct: 674 gaaccgctgacatctgattcttc 696
Score = 61.9 bits (31), Expect = 5e-008
Identities = 88/107 (82%)
Strand = Plus / Plus
Query: 350 agatgagggaatgtcgtcccaaagtatgatccatcgatgttgccttggtacttggatctt 409
|||||||| ||||| || || || |||| ||||||| | |||||||| ||||| ||||||
Sbjct: 182 agatgaggaaatgtggttccgaaatatgctccatcggtattgccttgatacttcgatctt 241
Query: 410 ggatagttaagttcttcgcatttcggacaatatatcttcacagtgct 456
||||||| || ||||| || || ||||| || |||||||| |||||
Sbjct: 242 ggatagtaaacatcttcacactttggacagtaaatcttcactgtgct 288
>gb|DR020527.1|DR020527 STRS1_37_C11.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_37_C11_A034 5', mRNA sequence
Length = 755
Score = 101 bits (51), Expect = 6e-020
Identities = 165/203 (81%)
Strand = Plus / Plus
Query: 662 tcatcattagaagactcaatgtctaagatgagatcaagtgcataatcataatatggcacc 721
||||||||||| ||||| | || || || || ||||||||||||||||| ||||| ||
Sbjct: 472 tcatcattagatgactccacatccaaaatcaggtcaagtgcataatcatagtatggaact 531
Query: 722 tgattactcagaccacacaggttaaaatcatcctgtatatagtcatcatcgatctcacaa 781
|| |||| || ||||| ||||| ||||||||||| || || |||||||| | ||||||
Sbjct: 532 tggctactaagtccacaaaggttgaaatcatcctgaatgtactcatcatcaacttcacaa 591
Query: 782 aagaattcattgcctcgcaatgtacagaaccatgaaatccaggacgtgtcctctccctcg 841
||||| |||||||||| || |||||||||| || |||||||| ||||| ||||| ||
Sbjct: 592 aagaactcattgcctcttaaattacagaaccaagagatccaggatgtgtcatctccatca 651
Query: 842 gaaccactcacatcagaatcttc 864
||||| || ||||| || |||||
Sbjct: 652 gaaccgctgacatctgattcttc 674
Score = 61.9 bits (31), Expect = 5e-008
Identities = 88/107 (82%)
Strand = Plus / Plus
Query: 350 agatgagggaatgtcgtcccaaagtatgatccatcgatgttgccttggtacttggatctt 409
|||||||| ||||| || || || |||| ||||||| | |||||||| ||||| ||||||
Sbjct: 160 agatgaggaaatgtggttccgaaatatgctccatcggtattgccttgatacttcgatctt 219
Query: 410 ggatagttaagttcttcgcatttcggacaatatatcttcacagtgct 456
||||||| || ||||| || || ||||| || |||||||| |||||
Sbjct: 220 ggatagtaaacatcttcacactttggacagtaaatcttcactgtgct 266
>gb|DR071853.1|DR071853 RTDK1_22_B04.g1_A029 Roots, dark Pinus taeda cDNA clone
RTDK1_22_B04_A029 5', mRNA sequence
Length = 775
Score = 101 bits (51), Expect = 6e-020
Identities = 165/203 (81%)
Strand = Plus / Plus
Query: 662 tcatcattagaagactcaatgtctaagatgagatcaagtgcataatcataatatggcacc 721
||||||||||| ||||| | || || || || ||||||||||||||||| ||||| ||
Sbjct: 523 tcatcattagatgactccacatccaaaatcaggtcaagtgcataatcatagtatggaact 582
Query: 722 tgattactcagaccacacaggttaaaatcatcctgtatatagtcatcatcgatctcacaa 781
|| |||| || ||||| ||||| ||||||||||| || || |||||||| | ||||||
Sbjct: 583 tggctactaagtccacaaaggttgaaatcatcctgaatgtactcatcatcaacttcacaa 642
Query: 782 aagaattcattgcctcgcaatgtacagaaccatgaaatccaggacgtgtcctctccctcg 841
||||| |||||||||| || |||||||||| || |||||||| ||||| ||||| ||
Sbjct: 643 aagaactcattgcctcttaaattacagaaccaagagatccaggatgtgtcatctccatca 702
Query: 842 gaaccactcacatcagaatcttc 864
||||| || ||||| || |||||
Sbjct: 703 gaaccgctgacatctgattcttc 725
Score = 61.9 bits (31), Expect = 5e-008
Identities = 88/107 (82%)
Strand = Plus / Plus
Query: 350 agatgagggaatgtcgtcccaaagtatgatccatcgatgttgccttggtacttggatctt 409
|||||||| ||||| || || || |||| ||||||| | |||||||| ||||| ||||||
Sbjct: 211 agatgaggaaatgtggttccgaaatatgctccatcggtattgccttgatacttcgatctt 270
Query: 410 ggatagttaagttcttcgcatttcggacaatatatcttcacagtgct 456
||||||| || ||||| || || ||||| || |||||||| |||||
Sbjct: 271 ggatagtaaacatcttcacactttggacagtaaatcttcactgtgct 317
>gb|DR093869.1|DR093869 STRR1_10_H08.g1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_10_H08_A033 5', mRNA sequence
Length = 845
Score = 101 bits (51), Expect = 6e-020
Identities = 165/203 (81%)
Strand = Plus / Minus
Query: 662 tcatcattagaagactcaatgtctaagatgagatcaagtgcataatcataatatggcacc 721
||||||||||| ||||| | || || || || ||||||||||||||||| ||||| ||
Sbjct: 401 tcatcattagatgactccacatccaaaatcaggtcaagtgcataatcatagtatggaact 342
Query: 722 tgattactcagaccacacaggttaaaatcatcctgtatatagtcatcatcgatctcacaa 781
|| |||| || ||||| ||||| ||||||||||| || || |||||||| | ||||||
Sbjct: 341 tggctactaagtccacaaaggttgaaatcatcctgaatgtactcatcatcaacttcacaa 282
Query: 782 aagaattcattgcctcgcaatgtacagaaccatgaaatccaggacgtgtcctctccctcg 841
||||| |||||||||| || |||||||||| || |||||||| ||||| ||||| ||
Sbjct: 281 aagaactcattgcctcttaaattacagaaccaagagatccaggatgtgtcatctccatca 222
Query: 842 gaaccactcacatcagaatcttc 864
||||| || ||||| || |||||
Sbjct: 221 gaaccgctgacatctgattcttc 199
Score = 61.9 bits (31), Expect = 5e-008
Identities = 88/107 (82%)
Strand = Plus / Minus
Query: 350 agatgagggaatgtcgtcccaaagtatgatccatcgatgttgccttggtacttggatctt 409
|||||||| ||||| || || || |||| ||||||| | |||||||| ||||| ||||||
Sbjct: 713 agatgaggaaatgtggttccgaaatatgctccatcggtattgccttgatacttcgatctt 654
Query: 410 ggatagttaagttcttcgcatttcggacaatatatcttcacagtgct 456
||||||| || ||||| || || ||||| || |||||||| |||||
Sbjct: 653 ggatagtaaacatcttcacactttggacagtaaatcttcactgtgct 607
>gb|DR120870.1|DR120870 RTMG1_32_B05.g1_A029 Roots minus magnesium Pinus taeda cDNA clone
RTMG1_32_B05_A029 5', mRNA sequence
Length = 848
Score = 101 bits (51), Expect = 6e-020
Identities = 165/203 (81%)
Strand = Plus / Minus
Query: 662 tcatcattagaagactcaatgtctaagatgagatcaagtgcataatcataatatggcacc 721
||||||||||| ||||| | || || || || ||||||||||||||||| ||||| ||
Sbjct: 304 tcatcattagatgactccacatccaaaatcaggtcaagtgcataatcatagtatggaact 245
Query: 722 tgattactcagaccacacaggttaaaatcatcctgtatatagtcatcatcgatctcacaa 781
|| |||| || ||||| ||||| ||||||||||| || || |||||||| | ||||||
Sbjct: 244 tggctactaagtccacaaaggttgaaatcatcctgaatgtactcatcatcaacttcacaa 185
Query: 782 aagaattcattgcctcgcaatgtacagaaccatgaaatccaggacgtgtcctctccctcg 841
||||| |||||||||| || |||||||||| || |||||||| ||||| ||||| ||
Sbjct: 184 aagaactcattgcctcttaaattacagaaccaagagatccaggatgtgtcatctccatca 125
Query: 842 gaaccactcacatcagaatcttc 864
||||| || ||||| || |||||
Sbjct: 124 gaaccgctgacatctgattcttc 102
Score = 48.1 bits (24), Expect = 8e-004
Identities = 57/68 (83%)
Strand = Plus / Minus
Query: 389 ttgccttggtacttggatcttggatagttaagttcttcgcatttcggacaatatatcttc 448
|||||||| ||||| ||||||||||||| || ||||| || || ||||| || ||||||
Sbjct: 577 ttgccttgatacttcgatcttggatagtaaacatcttcacactttggacagtaaatcttc 518
Query: 449 acagtgct 456
|| |||||
Sbjct: 517 actgtgct 510
>gb|DR693530.1|DR693530 EST1083618 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAE050 3' end, mRNA sequence
Length = 749
Score = 101 bits (51), Expect = 6e-020
Identities = 165/203 (81%)
Strand = Plus / Minus
Query: 662 tcatcattagaagactcaatgtctaagatgagatcaagtgcataatcataatatggcacc 721
||||||||||| ||||| | || || || || ||||||||||||||||| ||||| ||
Sbjct: 716 tcatcattagatgactccacatccaaaatcaggtcaagtgcataatcatagtatggaact 657
Query: 722 tgattactcagaccacacaggttaaaatcatcctgtatatagtcatcatcgatctcacaa 781
|| |||| || ||||| ||||| ||||||||||| || || |||||||| | ||||||
Sbjct: 656 tggctactaagtccacaaaggttgaaatcatcctgaatgtactcatcatcaacttcacaa 597
Query: 782 aagaattcattgcctcgcaatgtacagaaccatgaaatccaggacgtgtcctctccctcg 841
||||| |||||||||| || |||||||||| || |||||||| ||||| ||||| ||
Sbjct: 596 aagaactcattgcctcttaaattacagaaccaagagatccaggatgtgtcatctccatca 537
Query: 842 gaaccactcacatcagaatcttc 864
||||| || ||||| || |||||
Sbjct: 536 gaaccgctgacatctgattcttc 514
>gb|DT625596.1|DT625596 EST1157520 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone PIMA165 5' end, mRNA sequence
Length = 849
Score = 101 bits (51), Expect = 6e-020
Identities = 165/203 (81%)
Strand = Plus / Minus
Query: 662 tcatcattagaagactcaatgtctaagatgagatcaagtgcataatcataatatggcacc 721
||||||||||| ||||| | || || || || ||||||||||||||||| ||||| ||
Sbjct: 727 tcatcattagatgactccacatccaaaatcaggtcaagtgcataatcatagtatggaact 668
Query: 722 tgattactcagaccacacaggttaaaatcatcctgtatatagtcatcatcgatctcacaa 781
|| |||| || ||||| ||||| ||||||||||| || || |||||||| | ||||||
Sbjct: 667 tggctactaagtccacaaaggttgaaatcatcctgaatgtactcatcatcaacttcacaa 608
Query: 782 aagaattcattgcctcgcaatgtacagaaccatgaaatccaggacgtgtcctctccctcg 841
||||| |||||||||| || |||||||||| || |||||||| ||||| ||||| ||
Sbjct: 607 aagaactcattgcctcttaaattacagaaccaagagatccaggatgtgtcatctccatca 548
Query: 842 gaaccactcacatcagaatcttc 864
||||| || ||||| || |||||
Sbjct: 547 gaaccgctgacatctgattcttc 525
>gb|CF398489.1|CF398489 RTDS3_15_F05.b1_A022 Drought-stressed loblolly pine roots DS3 Pinus
taeda cDNA clone RTDS3_15_F05_A022 3', mRNA sequence
Length = 668
Score = 99.6 bits (50), Expect = 2e-019
Identities = 140/170 (82%)
Strand = Plus / Plus
Query: 695 tcaagtgcataatcataatatggcacctgattactcagaccacacaggttaaaatcatcc 754
||||||||||||||||| ||||| || || |||| || ||||| ||||| |||||||||
Sbjct: 6 tcaagtgcataatcatagtatggaacttggctactaagtccacaaaggttgaaatcatcc 65
Query: 755 tgtatatagtcatcatcgatctcacaaaagaattcattgcctcgcaatgtacagaaccat 814
|| || || |||||||| | ||||||||||| |||||||||| || ||||||||||
Sbjct: 66 tgaatgtactcatcatcaacttcacaaaagaactcattgcctcttaaattacagaaccaa 125
Query: 815 gaaatccaggacgtgtcctctccctcggaaccactcacatcagaatcttc 864
|| |||||||| ||||| ||||| || ||||| || ||||| || |||||
Sbjct: 126 gagatccaggatgtgtcatctccatcagaaccgctgacatctgattcttc 175
>gb|DT631216.1|DT631216 EST1146147 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMF629 3' end, mRNA sequence
Length = 822
Score = 99.6 bits (50), Expect = 2e-019
Identities = 140/170 (82%)
Strand = Plus / Minus
Query: 695 tcaagtgcataatcataatatggcacctgattactcagaccacacaggttaaaatcatcc 754
||||||||||||||||| ||||| || || |||| || ||||| ||||| |||||||||
Sbjct: 805 tcaagtgcataatcatagtatggaacttggctactaagtccacaaaggttgaaatcatcc 746
Query: 755 tgtatatagtcatcatcgatctcacaaaagaattcattgcctcgcaatgtacagaaccat 814
|| || || |||||||| | ||||||||||| |||||||||| || ||||||||||
Sbjct: 745 tgaatgtactcatcatcaacttcacaaaagaactcattgcctcttaaattacagaaccaa 686
Query: 815 gaaatccaggacgtgtcctctccctcggaaccactcacatcagaatcttc 864
|| |||||||| ||||| ||||| || ||||| || ||||| || |||||
Sbjct: 685 gagatccaggatgtgtcatctccatcagaaccgctgacatctgattcttc 636
>gb|CV147831.1|CV147831 EST859040 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone RPIEB58 5' end, mRNA sequence
Length = 931
Score = 93.7 bits (47), Expect = 2e-017
Identities = 164/203 (80%)
Strand = Plus / Minus
Query: 662 tcatcattagaagactcaatgtctaagatgagatcaagtgcataatcataatatggcacc 721
||||||||||| ||||| | || || || || ||||||||||||||||| ||||| ||
Sbjct: 567 tcatcattagatgactccacatccaaaatcaggtcaagtgcataatcatagtatggaact 508
Query: 722 tgattactcagaccacacaggttaaaatcatcctgtatatagtcatcatcgatctcacaa 781
|| |||| || ||||| ||||| ||||||||||| || || |||||||| | | ||||
Sbjct: 507 tggctactaagtccacaaaggttgaaatcatcctgaatgtactcatcatcaactttacaa 448
Query: 782 aagaattcattgcctcgcaatgtacagaaccatgaaatccaggacgtgtcctctccctcg 841
||||| |||||||||| || |||||||||| || |||||||| ||||| ||||| ||
Sbjct: 447 aagaactcattgcctcttaaattacagaaccaagagatccaggatgtgtcatctccatca 388
Query: 842 gaaccactcacatcagaatcttc 864
||||| || ||||| || |||||
Sbjct: 387 gaaccgctgacatctgattcttc 365
Score = 61.9 bits (31), Expect = 5e-008
Identities = 88/107 (82%)
Strand = Plus / Minus
Query: 350 agatgagggaatgtcgtcccaaagtatgatccatcgatgttgccttggtacttggatctt 409
|||||||| ||||| || || || |||| ||||||| | |||||||| ||||| ||||||
Sbjct: 879 agatgaggaaatgtggttccgaaatatgctccatcggtattgccttgatacttcgatctt 820
Query: 410 ggatagttaagttcttcgcatttcggacaatatatcttcacagtgct 456
||||||| || ||||| || || ||||| || |||||||| |||||
Sbjct: 819 ggatagtaaacatcttcacactttggacagtaaatcttcactgtgct 773
>gb|DR387294.1|DR387294 RTHG1_20_F12.g1_A029 Roots plus added mercury Pinus taeda cDNA
clone RTHG1_20_F12_A029 5', mRNA sequence
Length = 804
Score = 93.7 bits (47), Expect = 2e-017
Identities = 164/203 (80%)
Strand = Plus / Minus
Query: 662 tcatcattagaagactcaatgtctaagatgagatcaagtgcataatcataatatggcacc 721
||||||||||| ||||| | || || || || ||||||||||||||||| ||||| ||
Sbjct: 446 tcatcattagatgactccacatccaaaatcaggtcaagtgcataatcatagtatggaact 387
Query: 722 tgattactcagaccacacaggttaaaatcatcctgtatatagtcatcatcgatctcacaa 781
|| |||| || ||||| ||||| |||||||||| || || |||||||| | ||||||
Sbjct: 386 tggctactaagtccacaaaggttgaaatcatcctaaatgtactcatcatcaacttcacaa 327
Query: 782 aagaattcattgcctcgcaatgtacagaaccatgaaatccaggacgtgtcctctccctcg 841
||||| |||||||||| || |||||||||| || |||||||| ||||| ||||| ||
Sbjct: 326 aagaactcattgcctcttaaattacagaaccaagagatccaggatgtgtcatctccatca 267
Query: 842 gaaccactcacatcagaatcttc 864
||||| || ||||| || |||||
Sbjct: 266 gaaccgctgacatctgattcttc 244
Score = 61.9 bits (31), Expect = 5e-008
Identities = 88/107 (82%)
Strand = Plus / Minus
Query: 350 agatgagggaatgtcgtcccaaagtatgatccatcgatgttgccttggtacttggatctt 409
|||||||| ||||| || || || |||| ||||||| | |||||||| ||||| ||||||
Sbjct: 758 agatgaggaaatgtggttccgaaatatgctccatcggtattgccttgatacttcgatctt 699
Query: 410 ggatagttaagttcttcgcatttcggacaatatatcttcacagtgct 456
||||||| || ||||| || || ||||| || |||||||| |||||
Sbjct: 698 ggatagtaaacatcttcacactttggacagtaaatcttcactgtgct 652
>gb|DR684083.1|DR684083 EST1074160 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAAO70 3' end, mRNA sequence
Length = 751
Score = 93.7 bits (47), Expect = 2e-017
Identities = 164/203 (80%)
Strand = Plus / Minus
Query: 662 tcatcattagaagactcaatgtctaagatgagatcaagtgcataatcataatatggcacc 721
||||||||||| ||||| | || || || || |||||||||||||| || ||||| ||
Sbjct: 705 tcatcattagatgactccacatccaaaatcaggtcaagtgcataatcgtagtatggaact 646
Query: 722 tgattactcagaccacacaggttaaaatcatcctgtatatagtcatcatcgatctcacaa 781
|| |||| || ||||| ||||| ||||||||||| || || |||||||| | ||||||
Sbjct: 645 tggctactaagtccacaaaggttgaaatcatcctgaatgtactcatcatcaacttcacaa 586
Query: 782 aagaattcattgcctcgcaatgtacagaaccatgaaatccaggacgtgtcctctccctcg 841
||||| |||||||||| || |||||||||| || |||||||| ||||| ||||| ||
Sbjct: 585 aagaactcattgcctcttaaattacagaaccaagagatccaggatgtgtcatctccatca 526
Query: 842 gaaccactcacatcagaatcttc 864
||||| || ||||| || |||||
Sbjct: 525 gaaccgctgacatctgattcttc 503
>gb|BE241217.1|BE241217 NXNV_180_E12_F Nsf Xylem Normal wood Vertical Pinus taeda cDNA
clone NXNV_180_E12 5' similar to Arabidopsis thaliana
sequence At2g44680 putative casein kinase II beta
subunit see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 202
Score = 89.7 bits (45), Expect = 2e-016
Identities = 138/169 (81%)
Strand = Plus / Minus
Query: 662 tcatcattagaagactcaatgtctaagatgagatcaagtgcataatcataatatggcacc 721
||||||||||| ||||| | || || || || ||||||||||||||||| ||||| ||
Sbjct: 169 tcatcattagatgactccacatccaaaatcaggtcaagtgcataatcatagtatggaact 110
Query: 722 tgattactcagaccacacaggttaaaatcatcctgtatatagtcatcatcgatctcacaa 781
|| |||| || ||||| ||||| ||||||||||| || || |||||||| | ||||||
Sbjct: 109 tggctactaagtccacaaaggttgaaatcatcctgaatgtactcatcatcaacttcacaa 50
Query: 782 aagaattcattgcctcgcaatgtacagaaccatgaaatccaggacgtgt 830
||||| |||||||||| || |||||||||| || |||||||| ||||
Sbjct: 49 aagaactcattgcctcttaaattacagaaccaagagatccaggatgtgt 1
>gb|CF400393.1|CF400393 RTWW1_5_E07.b1_A015 Well-watered loblolly pine roots WW1 Pinus
taeda cDNA clone RTWW1_5_E07_A015 3', mRNA sequence
Length = 756
Score = 87.7 bits (44), Expect = 9e-016
Identities = 137/168 (81%)
Strand = Plus / Plus
Query: 697 aagtgcataatcataatatggcacctgattactcagaccacacaggttaaaatcatcctg 756
||||||||||||||| ||||| || || |||| || ||||| ||||| |||||||||||
Sbjct: 52 aagtgcataatcatagtatggaacttggctactaagtccacaaaggttgaaatcatcctg 111
Query: 757 tatatagtcatcatcgatctcacaaaagaattcattgcctcgcaatgtacagaaccatga 816
|| || |||||||| | ||||||||||| ||||||| || || |||||||||| ||
Sbjct: 112 aatgtactcatcatcaacttcacaaaagaactcattgcttcttaaattacagaaccaaga 171
Query: 817 aatccaggacgtgtcctctccctcggaaccactcacatcagaatcttc 864
|||||||| ||||| ||||| || ||||| || ||||| || |||||
Sbjct: 172 gatccaggatgtgtcatctccatcagaaccgctgacatctgattcttc 219
>gb|CF398111.1|CF398111 RTDS3_21_F07.b1_A022 Drought-stressed loblolly pine roots DS3 Pinus
taeda cDNA clone RTDS3_21_F07_A022 3', mRNA sequence
Length = 675
Score = 79.8 bits (40), Expect = 2e-013
Identities = 112/136 (82%)
Strand = Plus / Minus
Query: 662 tcatcattagaagactcaatgtctaagatgagatcaagtgcataatcataatatggcacc 721
||||||||||| ||||| | || || || || ||||||||||||||||| ||||| ||
Sbjct: 136 tcatcattagatgactccacatccaaaatcaggtcaagtgcataatcatagtatggaact 77
Query: 722 tgattactcagaccacacaggttaaaatcatcctgtatatagtcatcatcgatctcacaa 781
|| |||| || ||||| ||||| ||||||||||| || || |||||||| | ||||||
Sbjct: 76 tggctactaagtccacaaaggttgaaatcatcctgaatgtactcatcatcaacttcacaa 17
Query: 782 aagaattcattgcctc 797
||||| ||||||||||
Sbjct: 16 aagaactcattgcctc 1
Score = 48.1 bits (24), Expect = 8e-004
Identities = 57/68 (83%)
Strand = Plus / Minus
Query: 389 ttgccttggtacttggatcttggatagttaagttcttcgcatttcggacaatatatcttc 448
|||||||| ||||| ||||||||||||| || ||||| || || ||||| || ||||||
Sbjct: 409 ttgccttgatacttcgatcttggatagtaaacatcttcacactttggacagtaaatcttc 350
Query: 449 acagtgct 456
|| |||||
Sbjct: 349 actgtgct 342
>gb|CO159714.1|CO159714 FLD1_15_H03.b1_A029 Root flooded Pinus taeda cDNA clone
FLD1_15_H03_A029 3', mRNA sequence
Length = 741
Score = 79.8 bits (40), Expect = 2e-013
Identities = 112/136 (82%)
Strand = Plus / Minus
Query: 662 tcatcattagaagactcaatgtctaagatgagatcaagtgcataatcataatatggcacc 721
||||||||||| ||||| | || || || || ||||||||||||||||| ||||| ||
Sbjct: 144 tcatcattagatgactccacatccaaaatcaggtcaagtgcataatcatagtatggaact 85
Query: 722 tgattactcagaccacacaggttaaaatcatcctgtatatagtcatcatcgatctcacaa 781
|| |||| || ||||| ||||| ||||||||||| || || |||||||| | ||||||
Sbjct: 84 tggctactaagtccacaaaggttgaaatcatcctgaatgtactcatcatcaacttcacaa 25
Query: 782 aagaattcattgcctc 797
||||| ||||||||||
Sbjct: 24 aagaactcattgcctc 9
Score = 48.1 bits (24), Expect = 8e-004
Identities = 57/68 (83%)
Strand = Plus / Minus
Query: 389 ttgccttggtacttggatcttggatagttaagttcttcgcatttcggacaatatatcttc 448
|||||||| ||||| ||||||||||||| || ||||| || || ||||| || ||||||
Sbjct: 417 ttgccttgatacttcgatcttggatagtaaacatcttcacactttggacagtaaatcttc 358
Query: 449 acagtgct 456
|| |||||
Sbjct: 357 actgtgct 350
>gb|DR017539.1|DR017539 STRS1_17_A01.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_17_A01_A034 3', mRNA sequence
Length = 783
Score = 79.8 bits (40), Expect = 2e-013
Identities = 112/136 (82%)
Strand = Plus / Minus
Query: 662 tcatcattagaagactcaatgtctaagatgagatcaagtgcataatcataatatggcacc 721
||||||||||| ||||| | || || || || ||||||||||||||||| ||||| ||
Sbjct: 144 tcatcattagatgactccacatccaaaatcaggtcaagtgcataatcatagtatggaact 85
Query: 722 tgattactcagaccacacaggttaaaatcatcctgtatatagtcatcatcgatctcacaa 781
|| |||| || ||||| ||||| ||||||||||| || || |||||||| | ||||||
Sbjct: 84 tggctactaagtccacaaaggttgaaatcatcctgaatgtactcatcatcaacttcacaa 25
Query: 782 aagaattcattgcctc 797
||||| ||||||||||
Sbjct: 24 aagaactcattgcctc 9
Score = 61.9 bits (31), Expect = 5e-008
Identities = 88/107 (82%)
Strand = Plus / Minus
Query: 350 agatgagggaatgtcgtcccaaagtatgatccatcgatgttgccttggtacttggatctt 409
|||||||| ||||| || || || |||| ||||||| | |||||||| ||||| ||||||
Sbjct: 456 agatgaggaaatgtggttccgaaatatgctccatcggtattgccttgatacttcgatctt 397
Query: 410 ggatagttaagttcttcgcatttcggacaatatatcttcacagtgct 456
||||||| || ||||| || || ||||| || |||||||| |||||
Sbjct: 396 ggatagtaaacatcttcacactttggacagtaaatcttcactgtgct 350
>gb|DR093781.1|DR093781 STRR1_10_H08.b1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_10_H08_A033 3', mRNA sequence
Length = 753
Score = 79.8 bits (40), Expect = 2e-013
Identities = 112/136 (82%)
Strand = Plus / Minus
Query: 662 tcatcattagaagactcaatgtctaagatgagatcaagtgcataatcataatatggcacc 721
||||||||||| ||||| | || || || || ||||||||||||||||| ||||| ||
Sbjct: 143 tcatcattagatgactccacatccaaaatcaggtcaagtgcataatcatagtatggaact 84
Query: 722 tgattactcagaccacacaggttaaaatcatcctgtatatagtcatcatcgatctcacaa 781
|| |||| || ||||| ||||| ||||||||||| || || |||||||| | ||||||
Sbjct: 83 tggctactaagtccacaaaggttgaaatcatcctgaatgtactcatcatcaacttcacaa 24
Query: 782 aagaattcattgcctc 797
||||| ||||||||||
Sbjct: 23 aagaactcattgcctc 8
Score = 61.9 bits (31), Expect = 5e-008
Identities = 88/107 (82%)
Strand = Plus / Minus
Query: 350 agatgagggaatgtcgtcccaaagtatgatccatcgatgttgccttggtacttggatctt 409
|||||||| ||||| || || || |||| ||||||| | |||||||| ||||| ||||||
Sbjct: 455 agatgaggaaatgtggttccgaaatatgctccatcggtattgccttgatacttcgatctt 396
Query: 410 ggatagttaagttcttcgcatttcggacaatatatcttcacagtgct 456
||||||| || ||||| || || ||||| || |||||||| |||||
Sbjct: 395 ggatagtaaacatcttcacactttggacagtaaatcttcactgtgct 349
>gb|BQ696960.1|BQ696960 NXPV_047_D03_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_047_D03 5' similar to Arabidopsis
thaliana sequence At4g17640 casein kinase II beta chain
CKB2 see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 333
Score = 77.8 bits (39), Expect = 9e-013
Identities = 161/203 (79%)
Strand = Plus / Minus
Query: 662 tcatcattagaagactcaatgtctaagatgagatcaagtgcataatcataatatggcacc 721
||||||||||| ||||| | || || || || ||||||||||||||||| ||||| ||
Sbjct: 291 tcatcattagatgactccacatccaaaatcaggtcaagtgcataatcatagtatggaact 232
Query: 722 tgattactcagaccacacaggttaaaatcatcctgtatatagtcatcatcgatctcacaa 781
|| |||| || ||||| ||||| |||||| | | || || |||||||| | ||||||
Sbjct: 231 tggctactaagtccacaaaggttgaaatcanncngaatgtactcatcatcaacttcacaa 172
Query: 782 aagaattcattgcctcgcaatgtacagaaccatgaaatccaggacgtgtcctctccctcg 841
||||| |||||| ||| || |||||||||| || |||||||| ||||| ||||| ||
Sbjct: 171 aagaactcattgnctcttaaattacagaaccaagagatccaggatgtgtcatctccatca 112
Query: 842 gaaccactcacatcagaatcttc 864
||||| || ||||| || |||||
Sbjct: 111 gaaccgctgacatctgattcttc 89
>gb|DR682722.1|DR682722 EST1072797 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAAB74 3' end, mRNA sequence
Length = 767
Score = 77.8 bits (39), Expect = 9e-013
Identities = 108/131 (82%)
Strand = Plus / Minus
Query: 734 ccacacaggttaaaatcatcctgtatatagtcatcatcgatctcacaaaagaattcattg 793
||||| ||||| ||||||||||| || || |||||||| | ||||||||||| ||||||
Sbjct: 758 ccacaaaggttgaaatcatcctgaatgtactcatcatcaacttcacaaaagaactcattg 699
Query: 794 cctcgcaatgtacagaaccatgaaatccaggacgtgtcctctccctcggaaccactcaca 853
|||| || |||||||||| || |||||||| ||||| ||||| || ||||| || |||
Sbjct: 698 cctcttaaattacagaaccaagagatccaggatgtgtcatctccatcagaaccgctgaca 639
Query: 854 tcagaatcttc 864
|| || |||||
Sbjct: 638 tctgattcttc 628
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 119,760
Number of Sequences: 355925
Number of extensions: 119760
Number of successful extensions: 29308
Number of sequences better than 0.5: 92
Number of HSP's better than 0.5 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 29076
Number of HSP's gapped (non-prelim): 182
length of query: 1153
length of database: 217,277,237
effective HSP length: 19
effective length of query: 1134
effective length of database: 210,514,662
effective search space: 238723626708
effective search space used: 238723626708
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)