BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 1366945.2.1
(1191 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BQ701798.1|BQ701798 NXSI_120_F10_F NXSI (Nsf Xylem Side ... 40 0.20
gb|DR179281.1|DR179281 RTMNUT1_21_D05.b2_A029 Roots minus m... 40 0.20
gb|DR179584.1|DR179584 RTMNUT1_23_C05.b2_A029 Roots minus m... 40 0.20
>gb|BQ701798.1|BQ701798 NXSI_120_F10_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_120_F10 5', mRNA sequence
Length = 552
Score = 40.1 bits (20), Expect = 0.20
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 870 gctgcggctgctcctgctgcagctgcaa 897
|||||||||||| ||||||| |||||||
Sbjct: 429 gctgcggctgctgctgctgctgctgcaa 402
>gb|DR179281.1|DR179281 RTMNUT1_21_D05.b2_A029 Roots minus micronutrients Pinus taeda cDNA
clone RTMNUT1_21_D05_A029 3', mRNA sequence
Length = 530
Score = 40.1 bits (20), Expect = 0.20
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 870 gctgcggctgctcctgctgcagctgcaa 897
|||||||||||| ||||||| |||||||
Sbjct: 76 gctgcggctgctgctgctgctgctgcaa 103
>gb|DR179584.1|DR179584 RTMNUT1_23_C05.b2_A029 Roots minus micronutrients Pinus taeda cDNA
clone RTMNUT1_23_C05_A029 3', mRNA sequence
Length = 621
Score = 40.1 bits (20), Expect = 0.20
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 870 gctgcggctgctcctgctgcagctgcaa 897
|||||||||||| ||||||| |||||||
Sbjct: 167 gctgcggctgctgctgctgctgctgcaa 194
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 115,791
Number of Sequences: 355925
Number of extensions: 115791
Number of successful extensions: 36485
Number of sequences better than 0.5: 3
Number of HSP's better than 0.5 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 36482
Number of HSP's gapped (non-prelim): 3
length of query: 1191
length of database: 217,277,237
effective HSP length: 19
effective length of query: 1172
effective length of database: 210,514,662
effective search space: 246723183864
effective search space used: 246723183864
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)