BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 131591.2.2
(1252 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CF385296.1|CF385296 RTDR1_3_F02.b1_A015 Loblolly pine ro... 157 1e-036
gb|DR098589.1|DR098589 STRR1_46_C09.g1_A033 Stem Response R... 157 1e-036
gb|CF393360.1|CF393360 RTDR3_20_B01.g1_A022 Loblolly pine r... 149 3e-034
gb|CF477261.1|CF477261 RTWW3_6_F05.g1_A022 Well-watered lob... 149 3e-034
gb|DR025087.1|DR025087 STRS1_69_B11.g1_A034 Shoot tip pitch... 149 3e-034
gb|DR385646.1|DR385646 RTHG1_10_A05.b1_A029 Roots plus adde... 141 8e-032
gb|AY321088.1| Pinus pinaster phenylalanine ammonia-lyase (... 141 8e-032
gb|AY321089.1| Pinus pinaster phenylalanine ammonia-lyase (... 141 8e-032
gb|CF402922.1|CF402922 RTWW1_23_B05.g1_A015 Well-watered lo... 121 7e-026
gb|DR167864.1|DR167864 RTPHOS1_21_D05.g1_A029 Roots minus p... 121 7e-026
gb|CF476865.1|CF476865 RTWW3_4_B02.b1_A022 Well-watered lob... 115 5e-024
gb|CF670615.1|CF670615 RTCNT1_51_H09.b1_A029 Root control P... 113 2e-023
gb|CX649092.1|CX649092 COLD1_32_H12.g1_A029 Root cold Pinus... 113 2e-023
gb|DR079640.1|DR079640 RTFEPL1_12_C09.g1_A029 Roots plus ad... 113 2e-023
gb|AF013484.1|AF013484 Pinus banksiana phenylalanine ammoni... 113 2e-023
gb|AA556548.1|AA556548 403 Loblolly pine C Pinus taeda cDNA... 84 2e-014
gb|CV032516.1|CV032516 RTNACL1_8_E03.g1_A029 Roots plus add... 80 2e-013
gb|DR024409.1|DR024409 STRS1_64_F07.g1_A034 Shoot tip pitch... 80 2e-013
gb|DR100017.1|DR100017 STRR1_61_B01.b1_A033 Stem Response R... 68 9e-010
gb|DR101882.1|DR101882 STRR1_76_B02.g1_A033 Stem Response R... 68 9e-010
dbj|BD224286.1| Materials and methods for the modification ... 68 9e-010
gb|CF401338.1|CF401338 RTWW1_11_A01.g1_A015 Well-watered lo... 62 6e-008
gb|DR101633.1|DR101633 STRR1_74_E10.g1_A033 Stem Response R... 62 6e-008
gb|AF013483.1|AF013483 Pinus banksiana phenylalanine ammoni... 62 6e-008
gb|CF473922.1|CF473922 RTWW2_19_D07.g1_A021 Well-watered lo... 60 2e-007
gb|AF013482.1|AF013482 Pinus banksiana phenylalanine ammoni... 60 2e-007
gb|AF013485.1|AF013485 Pinus banksiana phenylalanine ammoni... 60 2e-007
gb|DR024117.1|DR024117 STRS1_62_B04.g1_A034 Shoot tip pitch... 56 4e-006
dbj|BD224321.1| Materials and methods for the modification ... 56 4e-006
dbj|BD224373.1| Materials and methods for the modification ... 56 4e-006
dbj|BD272993.1| Materials and methods for the modification ... 56 4e-006
gb|CO362385.1|CO362385 RTK1_3_E11.b1_A029 Roots minus potas... 54 1e-005
gb|DR015948.1|DR015948 STRS1_6_E07.g1_A034 Shoot tip pitch ... 54 1e-005
gb|CF390008.1|CF390008 RTDR2_11_E03.g1_A021 Loblolly pine r... 50 2e-004
gb|CF390971.1|CF390971 RTDR3_3_G02.b1_A022 Loblolly pine ro... 50 2e-004
gb|CX648830.1|CX648830 COLD1_31_E10.b1_A029 Root cold Pinus... 50 2e-004
gb|CX713456.1|CX713456 RTPQ1_9_B03.g1_A032 Roots treated wi... 50 2e-004
dbj|BD224374.1| Materials and methods for the modification ... 50 2e-004
gb|BX251368.1|BX251368 BX251368 Pinus pinaster differenciat... 48 9e-004
gb|BX252713.1|BX252713 BX252713 Pinus pinaster differenciat... 48 9e-004
gb|BX255619.1|BX255619 BX255619 Pinus pinaster differenciat... 48 9e-004
gb|BX679246.1|BX679246 BX679246 RS Pinus pinaster cDNA clon... 48 9e-004
gb|BX682680.1|BX682680 BX682680 Pinus pinaster differenciat... 48 9e-004
gb|BX682987.1|BX682987 BX682987 Pinus pinaster differenciat... 48 9e-004
gb|BX784148.1|BX784148 BX784148 Pinus pinaster differenciat... 48 9e-004
gb|H75111.1|H75111 236 PtIFG1 Pinus taeda cDNA clone 1918M,... 46 0.003
gb|BQ291010.1|BQ291010 NXRV054_E06_F NXRV (Nsf Xylem Root w... 46 0.003
gb|CF389630.1|CF389630 RTDR2_8_G07.g1_A021 Loblolly pine ro... 46 0.003
gb|CF394227.1|CF394227 RTDS2_4_D03.b1_A021 Drought-stressed... 46 0.003
gb|DR160726.1|DR160726 RTFE1_7_E06.g1_A029 Roots minus iron... 46 0.003
gb|AW043396.1|AW043396 ST32H06 Pine TriplEx shoot tip libra... 42 0.054
gb|BF221273.1|BF221273 NXCI_156_G08_F NXCI (Nsf Xylem Compr... 42 0.054
gb|CF389521.1|CF389521 RTDR2_8_G07.b1_A021 Loblolly pine ro... 42 0.054
gb|CO171210.1|CO171210 NDL1_19_H04.g1_A029 Needles control ... 42 0.054
gb|CO173225.1|CO173225 NDL1_34_G02.g1_A029 Needles control ... 42 0.054
gb|CO370051.1|CO370051 RTK1_65_E04.b1_A029 Roots minus pota... 42 0.054
gb|CO370129.1|CO370129 RTK1_65_E04.g1_A029 Roots minus pota... 42 0.054
gb|DR088763.1|DR088763 RTAL1_4_G05.b1_A029 Roots plus added... 42 0.054
gb|DR088824.1|DR088824 RTAL1_4_G05.g1_A029 Roots plus added... 42 0.054
gb|DR111615.1|DR111615 RTS1_19_C10.b1_A029 Roots minus sulf... 42 0.054
gb|DR111693.1|DR111693 RTS1_19_C10.g1_A029 Roots minus sulf... 42 0.054
gb|DR385710.1|DR385710 RTHG1_10_H03.b1_A029 Roots plus adde... 42 0.054
gb|DR746002.1|DR746002 RTCU1_34_B11.b1_A029 Roots plus adde... 42 0.054
gb|DR746073.1|DR746073 RTCU1_34_B11.g1_A029 Roots plus adde... 42 0.054
gb|AW010515.1|AW010515 ST07F10 Pine TriplEx shoot tip libra... 40 0.21
gb|AW056910.1|AW056910 ST57G06 Pine TriplEx shoot tip libra... 40 0.21
gb|AW437980.1|AW437980 ST83B03 Pine TriplEx shoot tip libra... 40 0.21
gb|AW438026.1|AW438026 ST83F07 Pine TriplEx shoot tip libra... 40 0.21
gb|BF220964.1|BF220964 NXCI_153_B06_F NXCI (Nsf Xylem Compr... 40 0.21
gb|BF516975.1|BF516975 NXSI_007_E08_F NXSI (Nsf Xylem Side ... 40 0.21
gb|BF517293.1|BF517293 NXSI_012_F09_F NXSI (Nsf Xylem Side ... 40 0.21
gb|BG040036.1|BG040036 NXSI_105_F08_F NXSI (Nsf Xylem Side ... 40 0.21
gb|BG275264.1|BG275264 NXSI_138_F06_F NXSI (Nsf Xylem Side ... 40 0.21
gb|BG275622.1|BG275622 NXSI_144_A09_F NXSI (Nsf Xylem Side ... 40 0.21
gb|BM493481.1|BM493481 NXLV_065_A10_F NXLV (Nsf Xylem Late ... 40 0.21
gb|BM493636.1|BM493636 NXLV_068_E08_F NXLV (Nsf Xylem Late ... 40 0.21
gb|BQ290599.1|BQ290599 NXRV047_C12_F NXRV (Nsf Xylem Root w... 40 0.21
gb|BQ290784.1|BQ290784 NXRV049_D11_F NXRV (Nsf Xylem Root w... 40 0.21
gb|BQ654790.1|BQ654790 NXRV085_F12_F NXRV (Nsf Xylem Root w... 40 0.21
gb|BQ700043.1|BQ700043 NXRV133_F07_F NXRV (Nsf Xylem Root w... 40 0.21
gb|CF664241.1|CF664241 RTCNT1_8_H08.b1_A029 Root control Pi... 40 0.21
gb|CF664296.1|CF664296 RTCNT1_8_H08.g1_A029 Root control Pi... 40 0.21
gb|CF667015.1|CF667015 RTCNT1_27_D11.g1_A029 Root control P... 40 0.21
gb|CO162874.1|CO162874 FLD1_38_B12.b1_A029 Root flooded Pin... 40 0.21
gb|CO162953.1|CO162953 FLD1_38_B12.g1_A029 Root flooded Pin... 40 0.21
gb|CX648119.1|CX648119 COLD1_26_D08.g1_A029 Root cold Pinus... 40 0.21
gb|CX649587.1|CX649587 COLD1_36_E08.b1_A029 Root cold Pinus... 40 0.21
gb|CX714223.1|CX714223 RTPQ1_19_A02.g1_A032 Roots treated w... 40 0.21
gb|DR053571.1|DR053571 RTCA1_12_B04.b1_A029 Roots minus cal... 40 0.21
gb|DR054332.1|DR054332 RTCA1_16_E04.g1_A029 Roots minus cal... 40 0.21
gb|DR099778.1|DR099778 STRR1_58_A06.g1_A033 Stem Response R... 40 0.21
gb|DR683865.1|DR683865 EST1073941 Normalized pine embryo li... 40 0.21
gb|DR691863.1|DR691863 EST1081950 Normalized pine embryo li... 40 0.21
gb|DR743329.1|DR743329 RTCU1_15_D03.b1_A029 Roots plus adde... 40 0.21
gb|DR744392.1|DR744392 RTCU1_22_E02.b1_A029 Roots plus adde... 40 0.21
gb|DR745904.1|DR745904 RTCU1_33_H02.b1_A029 Roots plus adde... 40 0.21
gb|DR745981.1|DR745981 RTCU1_33_H02.g1_A029 Roots plus adde... 40 0.21
gb|DT631976.1|DT631976 EST1146907 Normalized pine embryo li... 40 0.21
>gb|CF385296.1|CF385296 RTDR1_3_F02.b1_A015 Loblolly pine roots recovering from drought DR1
Pinus taeda cDNA clone RTDR1_3_F02_A015 3', mRNA
sequence
Length = 565
Score = 157 bits (79), Expect = 1e-036
Identities = 283/351 (80%)
Strand = Plus / Plus
Query: 3 catgagcttcaggatgtcgatcgcctcggcggtcttcctggccgagacgaggcccaggga 62
|||||| || || |||||||| |||||||| | || | ||| |||| ||||||||| ||
Sbjct: 54 catgagattgagtatgtcgattgcctcggctgatttgcgggctgagatgaggcccagaga 113
Query: 63 gttcacgtcctggttgtgctgctccgcgctctgcacgtggttggtgatggggttgcccag 122
|| || || |||||||||||||| |||||||| |||||| |||||| ||| || | ||
Sbjct: 114 attgacatcttggttgtgctgctcggcgctctggacgtgggtggtgacagggctggcgag 173
Query: 123 gtactggagctcggagcagtaggacgccatggcgatctcggtgcccttgaacccgtagtc 182
|||||||||||| || |||||| |||||||| ||||||| ||||||||| ||||||||
Sbjct: 174 gtactggagctccgatgtgtaggaagccatggctatctcggcgcccttgaagccgtagtc 233
Query: 183 caggctcgggttgcggctgccggccaggttggaggtcagcccgttgttgtagaactcgtt 242
|||||||||||| ||| ||| || || || | ||| || ||||||| | |||||
Sbjct: 234 gaggctcgggttggggccaccgctgagattcgaaggcaggccaccgttgtagtaatcgtt 293
Query: 243 gaccagctcggagaactgcgcgaacatgagcttgccgatgttggcgacggcgaggcgggc 302
||| ||||| ||||| || |||||||| ||||| ||||| ||||| ||||||||
Sbjct: 294 gacgagctccgagaattgggcgaacattagcttcccgattgcggcgagagcgaggcgcag 353
Query: 303 gttgtccatggacacgccgatcggggtgccctggaagttgccgccgtgcag 353
|||||||||||| || ||||| ||||| ||||||||||| |||||||||||
Sbjct: 354 gttgtccatggagacaccgattggggtcccctggaagttcccgccgtgcag 404
>gb|DR098589.1|DR098589 STRR1_46_C09.g1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_46_C09_A033 5', mRNA sequence
Length = 624
Score = 157 bits (79), Expect = 1e-036
Identities = 283/351 (80%)
Strand = Plus / Minus
Query: 3 catgagcttcaggatgtcgatcgcctcggcggtcttcctggccgagacgaggcccaggga 62
|||||| || || |||||||| |||||||| | || | ||| |||| ||||||||| ||
Sbjct: 408 catgagattgagtatgtcgattgcctcggctgatttgcgggctgagatgaggcccagaga 349
Query: 63 gttcacgtcctggttgtgctgctccgcgctctgcacgtggttggtgatggggttgcccag 122
|| || || |||||||||||||| |||||||| |||||| |||||| ||| || | ||
Sbjct: 348 attgacatcttggttgtgctgctcggcgctctggacgtgggtggtgacagggctggcgag 289
Query: 123 gtactggagctcggagcagtaggacgccatggcgatctcggtgcccttgaacccgtagtc 182
|||||||||||| || |||||| |||||||| ||||||| ||||||||| ||||||||
Sbjct: 288 gtactggagctccgatgtgtaggaagccatggctatctcggcgcccttgaagccgtagtc 229
Query: 183 caggctcgggttgcggctgccggccaggttggaggtcagcccgttgttgtagaactcgtt 242
|||||||||||| ||| ||| || || || | ||| || ||||||| | |||||
Sbjct: 228 gaggctcgggttggggccaccgctgagattcgaaggcaggccaccgttgtagtaatcgtt 169
Query: 243 gaccagctcggagaactgcgcgaacatgagcttgccgatgttggcgacggcgaggcgggc 302
||| ||||| ||||| || |||||||| ||||| ||||| ||||| ||||||||
Sbjct: 168 gacgagctccgagaattgggcgaacattagcttcccgattgcggcgagagcgaggcgcag 109
Query: 303 gttgtccatggacacgccgatcggggtgccctggaagttgccgccgtgcag 353
|||||||||||| || ||||| ||||| ||||||||||| |||||||||||
Sbjct: 108 gttgtccatggagacaccgattggggtcccctggaagttcccgccgtgcag 58
>gb|CF393360.1|CF393360 RTDR3_20_B01.g1_A022 Loblolly pine roots recovering from drought
DR3 Pinus taeda cDNA clone RTDR3_20_B01_A022 5', mRNA
sequence
Length = 756
Score = 149 bits (75), Expect = 3e-034
Identities = 282/351 (80%)
Strand = Plus / Minus
Query: 3 catgagcttcaggatgtcgatcgcctcggcggtcttcctggccgagacgaggcccaggga 62
|||||| || || |||||||| |||||||| | || | ||| |||| ||||||||| ||
Sbjct: 614 catgagattgagtatgtcgattgcctcggctgatttgcgggctgagatgaggcccagaga 555
Query: 63 gttcacgtcctggttgtgctgctccgcgctctgcacgtggttggtgatggggttgcccag 122
|| | || |||||||||||||| |||||||| |||||| |||||| ||| || | ||
Sbjct: 554 attgatatcttggttgtgctgctcggcgctctggacgtgggtggtgacagggctggcgag 495
Query: 123 gtactggagctcggagcagtaggacgccatggcgatctcggtgcccttgaacccgtagtc 182
|||||||||||| || |||||| |||||||| ||||||| ||||||||| ||||||||
Sbjct: 494 gtactggagctccgatgtgtaggaagccatggctatctcggcgcccttgaagccgtagtc 435
Query: 183 caggctcgggttgcggctgccggccaggttggaggtcagcccgttgttgtagaactcgtt 242
|||||||||||| ||| ||| || || || | ||| || ||||||| | |||||
Sbjct: 434 gaggctcgggttggggccaccgctgagattcgaaggcaggccaccgttgtagtaatcgtt 375
Query: 243 gaccagctcggagaactgcgcgaacatgagcttgccgatgttggcgacggcgaggcgggc 302
||| ||||| ||||| || |||||||| ||||| ||||| ||||| ||||||||
Sbjct: 374 gacgagctccgagaattgggcgaacattagcttcccgattgcggcgagagcgaggcgcag 315
Query: 303 gttgtccatggacacgccgatcggggtgccctggaagttgccgccgtgcag 353
|||||||||||| || ||||| ||||| ||||||||||| |||||||||||
Sbjct: 314 gttgtccatggagacaccgattggggtcccctggaagttcccgccgtgcag 264
>gb|CF477261.1|CF477261 RTWW3_6_F05.g1_A022 Well-watered loblolly pine roots WW3 Pinus
taeda cDNA clone RTWW3_6_F05_A022 5', mRNA sequence
Length = 715
Score = 149 bits (75), Expect = 3e-034
Identities = 282/351 (80%)
Strand = Plus / Minus
Query: 3 catgagcttcaggatgtcgatcgcctcggcggtcttcctggccgagacgaggcccaggga 62
|||||| || || |||||||| |||||||| | || | ||| |||| ||||||||| ||
Sbjct: 563 catgagattgagtatgtcgattgcctcggctgatttgcgggctgagatgaggcccagaga 504
Query: 63 gttcacgtcctggttgtgctgctccgcgctctgcacgtggttggtgatggggttgcccag 122
|| | || |||||||||||||| |||||||| |||||| |||||| ||| || | ||
Sbjct: 503 attgatatcttggttgtgctgctcggcgctctggacgtgggtggtgacagggctggcgag 444
Query: 123 gtactggagctcggagcagtaggacgccatggcgatctcggtgcccttgaacccgtagtc 182
|||||||||||| || |||||| |||||||| ||||||| ||||||||| ||||||||
Sbjct: 443 gtactggagctccgatgtgtaggaagccatggctatctcggcgcccttgaagccgtagtc 384
Query: 183 caggctcgggttgcggctgccggccaggttggaggtcagcccgttgttgtagaactcgtt 242
|||||||||||| ||| ||| || || || | ||| || ||||||| | |||||
Sbjct: 383 gaggctcgggttggggccaccgctgagattcgaaggcaggccaccgttgtagtaatcgtt 324
Query: 243 gaccagctcggagaactgcgcgaacatgagcttgccgatgttggcgacggcgaggcgggc 302
||| ||||| ||||| || |||||||| ||||| ||||| ||||| ||||||||
Sbjct: 323 gacgagctccgagaattgggcgaacattagcttcccgattgcggcgagagcgaggcgcag 264
Query: 303 gttgtccatggacacgccgatcggggtgccctggaagttgccgccgtgcag 353
|||||||||||| || ||||| ||||| ||||||||||| |||||||||||
Sbjct: 263 gttgtccatggagacaccgattggggtcccctggaagttcccgccgtgcag 213
>gb|DR025087.1|DR025087 STRS1_69_B11.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_69_B11_A034 5', mRNA sequence
Length = 833
Score = 149 bits (75), Expect = 3e-034
Identities = 282/351 (80%)
Strand = Plus / Minus
Query: 3 catgagcttcaggatgtcgatcgcctcggcggtcttcctggccgagacgaggcccaggga 62
|||||| || || |||||||| |||||||| | || | ||| |||| ||||||||| ||
Sbjct: 454 catgagattgagtatgtcgattgcctcggctgatttgcgggctgagatgaggcccagaga 395
Query: 63 gttcacgtcctggttgtgctgctccgcgctctgcacgtggttggtgatggggttgcccag 122
|| | || |||||||||||||| |||||||| |||||| |||||| ||| || | ||
Sbjct: 394 attgatatcttggttgtgctgctcggcgctctggacgtgggtggtgacagggctggcgag 335
Query: 123 gtactggagctcggagcagtaggacgccatggcgatctcggtgcccttgaacccgtagtc 182
|||||||||||| || |||||| |||||||| ||||||| ||||||||| ||||||||
Sbjct: 334 gtactggagctccgatgtgtaggaagccatggctatctcggcgcccttgaagccgtagtc 275
Query: 183 caggctcgggttgcggctgccggccaggttggaggtcagcccgttgttgtagaactcgtt 242
|||||||||||| ||| ||| || || || | ||| || ||||||| | |||||
Sbjct: 274 gaggctcgggttggggccaccgctgagattcgaaggcaggccaccgttgtagtaatcgtt 215
Query: 243 gaccagctcggagaactgcgcgaacatgagcttgccgatgttggcgacggcgaggcgggc 302
||| ||||| ||||| || |||||||| ||||| ||||| ||||| ||||||||
Sbjct: 214 gacgagctccgagaattgggcgaacattagcttcccgattgcggcgagagcgaggcgcag 155
Query: 303 gttgtccatggacacgccgatcggggtgccctggaagttgccgccgtgcag 353
|||||||||||| || ||||| ||||| ||||||||||| |||||||||||
Sbjct: 154 gttgtccatggagacaccgattggggtcccctggaagttcccgccgtgcag 104
>gb|DR385646.1|DR385646 RTHG1_10_A05.b1_A029 Roots plus added mercury Pinus taeda cDNA
clone RTHG1_10_A05_A029 3', mRNA sequence
Length = 798
Score = 141 bits (71), Expect = 8e-032
Identities = 281/351 (80%)
Strand = Plus / Plus
Query: 3 catgagcttcaggatgtcgatcgcctcggcggtcttcctggccgagacgaggcccaggga 62
|||||| || || |||||||| |||||||| | || | ||| |||| ||||||||| ||
Sbjct: 48 catgagattgagtatgtcgattgcctcggctgatttgcgggctgagatgaggcccagaga 107
Query: 63 gttcacgtcctggttgtgctgctccgcgctctgcacgtggttggtgatggggttgcccag 122
|| || || |||||||||||||| |||||||| |||||| |||||| ||| | | ||
Sbjct: 108 attgacatcttggttgtgctgctcggcgctctggacgtgggtggtgacagggctagcgag 167
Query: 123 gtactggagctcggagcagtaggacgccatggcgatctcggtgcccttgaacccgtagtc 182
|||||||||||| || |||||| |||||||| ||||||| ||||||||| ||||||||
Sbjct: 168 gtactggagctccgatgtgtaggaagccatggctatctcggcgcccttgaagccgtagtc 227
Query: 183 caggctcgggttgcggctgccggccaggttggaggtcagcccgttgttgtagaactcgtt 242
|||||||||||| ||| ||| || || || | ||| || ||||||| | |||||
Sbjct: 228 gaggctcgggttggggccaccgctgagattcgaaggcaggccaccgttgtagtaatcgtt 287
Query: 243 gaccagctcggagaactgcgcgaacatgagcttgccgatgttggcgacggcgaggcgggc 302
||| ||||| ||||| || |||||||| ||||| ||||| ||||| ||||||||
Sbjct: 288 gacgagctccgagaattgggcgaacattagcttcccgattgcggcgagagcgaggcgcag 347
Query: 303 gttgtccatggacacgccgatcggggtgccctggaagttgccgccgtgcag 353
|||||||||||| || ||||| ||||| ||||| ||||| |||||||||||
Sbjct: 348 gttgtccatggagacaccgattggggtcccctgaaagttcccgccgtgcag 398
>gb|AY321088.1| Pinus pinaster phenylalanine ammonia-lyase (pal1) mRNA, complete cds
Length = 2570
Score = 141 bits (71), Expect = 8e-032
Identities = 281/351 (80%)
Strand = Plus / Minus
Query: 3 catgagcttcaggatgtcgatcgcctcggcggtcttcctggccgagacgaggcccaggga 62
|||||| || || |||||||| |||||||| | || | ||| |||| ||||||||| ||
Sbjct: 1714 catgagattgagtatgtcgattgcctcggctgatttgcgggctgagatgaggcccagaga 1655
Query: 63 gttcacgtcctggttgtgctgctccgcgctctgcacgtggttggtgatggggttgcccag 122
|| || || |||||||||||||| |||||||| |||||| |||||| ||| || | ||
Sbjct: 1654 attgacatcttggttgtgctgctcggcgctctggacgtgggtggtgacagggctggcgag 1595
Query: 123 gtactggagctcggagcagtaggacgccatggcgatctcggtgcccttgaacccgtagtc 182
|||| | ||||| || |||||| |||||||| ||||||| ||||||||| ||||||||
Sbjct: 1594 gtacagaagctccgatgtgtaggaagccatggctatctcggcgcccttgaagccgtagtc 1535
Query: 183 caggctcgggttgcggctgccggccaggttggaggtcagcccgttgttgtagaactcgtt 242
|||||||||||| ||| ||| || || || | ||| || ||||||| | |||||
Sbjct: 1534 gaggctcgggttggggccaccgctgagattcgaaggcaggccaccgttgtagtaatcgtt 1475
Query: 243 gaccagctcggagaactgcgcgaacatgagcttgccgatgttggcgacggcgaggcgggc 302
||| ||||| ||||| || |||||||| ||||| ||||| ||||| ||||||||
Sbjct: 1474 gacgagctccgagaattgggcgaacattagcttcccgattgcggcgagagcgaggcgcag 1415
Query: 303 gttgtccatggacacgccgatcggggtgccctggaagttgccgccgtgcag 353
|||||||||||| || ||||| ||||| ||||||||||| |||||||||||
Sbjct: 1414 gttgtccatggagacaccgattggggtcccctggaagttcccgccgtgcag 1364
>gb|AY321089.1| Pinus pinaster phenylalanine ammonia-lyase (pal2) mRNA, complete cds
Length = 2561
Score = 141 bits (71), Expect = 8e-032
Identities = 281/351 (80%)
Strand = Plus / Minus
Query: 3 catgagcttcaggatgtcgatcgcctcggcggtcttcctggccgagacgaggcccaggga 62
|||||| || || |||||||| |||||||| | || | ||| |||| ||||||||| ||
Sbjct: 1655 catgagattgagtatgtcgattgcctcggctgatttgcgggctgagatgaggcccagaga 1596
Query: 63 gttcacgtcctggttgtgctgctccgcgctctgcacgtggttggtgatggggttgcccag 122
|| || || |||||||||||||| |||||||| |||||| |||||| ||| || | ||
Sbjct: 1595 attgacatcttggttgtgctgctcggcgctctggacgtgggtggtgacagggctggcgag 1536
Query: 123 gtactggagctcggagcagtaggacgccatggcgatctcggtgcccttgaacccgtagtc 182
|||| | ||||| || |||||| |||||||| ||||||| ||||||||| ||||||||
Sbjct: 1535 gtacagaagctccgatgtgtaggaagccatggctatctcggcgcccttgaagccgtagtc 1476
Query: 183 caggctcgggttgcggctgccggccaggttggaggtcagcccgttgttgtagaactcgtt 242
|||||||||||| ||| ||| || || || | ||| || ||||||| | |||||
Sbjct: 1475 gaggctcgggttggggccaccgctgagattcgaaggcaggccaccgttgtagtaatcgtt 1416
Query: 243 gaccagctcggagaactgcgcgaacatgagcttgccgatgttggcgacggcgaggcgggc 302
||| ||||| ||||| || |||||||| ||||| ||||| ||||| ||||||||
Sbjct: 1415 gacgagctccgagaattgggcgaacattagcttcccgattgcggcgagagcgaggcgcag 1356
Query: 303 gttgtccatggacacgccgatcggggtgccctggaagttgccgccgtgcag 353
|||||||||||| || ||||| ||||| ||||||||||| |||||||||||
Sbjct: 1355 gttgtccatggagacaccgattggggtcccctggaagttcccgccgtgcag 1305
>gb|CF402922.1|CF402922 RTWW1_23_B05.g1_A015 Well-watered loblolly pine roots WW1 Pinus
taeda cDNA clone RTWW1_23_B05_A015 5', mRNA sequence
Length = 793
Score = 121 bits (61), Expect = 7e-026
Identities = 160/193 (82%)
Strand = Plus / Minus
Query: 3 catgagcttcaggatgtcgatcgcctcggcggtcttcctggccgagacgaggcccaggga 62
|||||| || || |||||||| |||||||| | || | ||| |||| ||||||||| ||
Sbjct: 294 catgagattgagtatgtcgattgcctcggctgatttgcgggctgagatgaggcccagaga 235
Query: 63 gttcacgtcctggttgtgctgctccgcgctctgcacgtggttggtgatggggttgcccag 122
|| || || |||||||||||||| |||||||| |||||| |||||| ||| || | ||
Sbjct: 234 attgacatcttggttgtgctgctcggcgctctggacgtgggtggtgacagggctggcgag 175
Query: 123 gtactggagctcggagcagtaggacgccatggcgatctcggtgcccttgaacccgtagtc 182
|||||||||||| || |||||| |||||||| ||||||| ||||||||| ||||||||
Sbjct: 174 gtactggagctccgatgtgtaggaagccatggctatctcggcgcccttgaagccgtagtc 115
Query: 183 caggctcgggttg 195
||||||||||||
Sbjct: 114 gaggctcgggttg 102
>gb|DR167864.1|DR167864 RTPHOS1_21_D05.g1_A029 Roots minus phosphorous Pinus taeda cDNA
clone RTPHOS1_21_D05_A029 5', mRNA sequence
Length = 606
Score = 121 bits (61), Expect = 7e-026
Identities = 160/193 (82%)
Strand = Plus / Minus
Query: 3 catgagcttcaggatgtcgatcgcctcggcggtcttcctggccgagacgaggcccaggga 62
|||||| || || |||||||| |||||||| | || | ||| |||| ||||||||| ||
Sbjct: 240 catgagattgagtatgtcgattgcctcggctgatttgcgggctgagatgaggcccagaga 181
Query: 63 gttcacgtcctggttgtgctgctccgcgctctgcacgtggttggtgatggggttgcccag 122
|| || || |||||||||||||| |||||||| |||||| |||||| ||| || | ||
Sbjct: 180 attgacatcttggttgtgctgctcggcgctctggacgtgggtggtgacagggctggcgag 121
Query: 123 gtactggagctcggagcagtaggacgccatggcgatctcggtgcccttgaacccgtagtc 182
|||||||||||| || |||||| |||||||| ||||||| ||||||||| ||||||||
Sbjct: 120 gtactggagctccgatgtgtaggaagccatggctatctcggcgcccttgaagccgtagtc 61
Query: 183 caggctcgggttg 195
||||||||||||
Sbjct: 60 gaggctcgggttg 48
>gb|CF476865.1|CF476865 RTWW3_4_B02.b1_A022 Well-watered loblolly pine roots WW3 Pinus
taeda cDNA clone RTWW3_4_B02_A022 3', mRNA sequence
Length = 561
Score = 115 bits (58), Expect = 5e-024
Identities = 259/326 (79%)
Strand = Plus / Plus
Query: 3 catgagcttcaggatgtcgatcgcctcggcggtcttcctggccgagacgaggcccaggga 62
|||||| || || |||||||| |||||||| | || | ||| |||| ||||||||| ||
Sbjct: 236 catgagattgagtatgtcgattgcctcggctgatttgcgggctgagatgaggcccagaga 295
Query: 63 gttcacgtcctggttgtgctgctccgcgctctgcacgtggttggtgatggggttgcccag 122
|| | || |||||||||||||| |||||||| |||||| |||||| ||| || | ||
Sbjct: 296 attgatatcttggttgtgctgctcggcgctctggacgtgggtggtgacagggctggcgag 355
Query: 123 gtactggagctcggagcagtaggacgccatggcgatctcggtgcccttgaacccgtagtc 182
|||||||||||| || |||||| |||||||| ||||||| ||||||||| ||||||||
Sbjct: 356 gtactggagctccgatgtgtaggaagccatggctatctcggcgcccttgaagccgtagtc 415
Query: 183 caggctcgggttgcggctgccggccaggttggaggtcagcccgttgttgtagaactcgtt 242
|||||||||||| ||| ||| || || || | ||| || ||||||| | |||||
Sbjct: 416 gaggctcgggttggggccaccgctgagattcgaaggcaggccaccgttgtagtaatcgtt 475
Query: 243 gaccagctcggagaactgcgcgaacatgagcttgccgatgttggcgacggcgaggcgggc 302
||| ||||| ||||| || |||||||| ||||| ||||| ||||| ||||||||
Sbjct: 476 gacgagctccgagaattgggcgaacattagcttcccgattgcggcgagagcgaggcgcag 535
Query: 303 gttgtccatggacacgccgatcgggg 328
|||||||||||| || ||||| ||||
Sbjct: 536 gttgtccatggagacaccgattgggg 561
>gb|CF670615.1|CF670615 RTCNT1_51_H09.b1_A029 Root control Pinus taeda cDNA clone
RTCNT1_51_H09_A029 3', mRNA sequence
Length = 705
Score = 113 bits (57), Expect = 2e-023
Identities = 159/193 (82%)
Strand = Plus / Plus
Query: 3 catgagcttcaggatgtcgatcgcctcggcggtcttcctggccgagacgaggcccaggga 62
|||||| || || |||||||| |||||||| | || | ||| |||| ||||||||| ||
Sbjct: 493 catgagattgagtatgtcgattgcctcggctgatttgcgggctgagatgaggcccagaga 552
Query: 63 gttcacgtcctggttgtgctgctccgcgctctgcacgtggttggtgatggggttgcccag 122
|| || || |||||||||||||| |||||||| |||||| |||||| ||| | | ||
Sbjct: 553 attgacatcttggttgtgctgctcggcgctctggacgtgggtggtgacagggctagcgag 612
Query: 123 gtactggagctcggagcagtaggacgccatggcgatctcggtgcccttgaacccgtagtc 182
|||||||||||| || |||||| |||||||| ||||||| ||||||||| ||||||||
Sbjct: 613 gtactggagctccgatgtgtaggaagccatggctatctcggcgcccttgaagccgtagtc 672
Query: 183 caggctcgggttg 195
||||||||||||
Sbjct: 673 gaggctcgggttg 685
>gb|CX649092.1|CX649092 COLD1_32_H12.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_32_H12_A029 5', mRNA sequence
Length = 782
Score = 113 bits (57), Expect = 2e-023
Identities = 255/321 (79%)
Strand = Plus / Minus
Query: 3 catgagcttcaggatgtcgatcgcctcggcggtcttcctggccgagacgaggcccaggga 62
|||||| || || |||||||| |||||||| | || | ||| |||| ||||||||| ||
Sbjct: 322 catgagattgagtatgtcgattgcctcggctgatttgcgggctgagatgaggcccagaga 263
Query: 63 gttcacgtcctggttgtgctgctccgcgctctgcacgtggttggtgatggggttgcccag 122
|| | || |||||||||||||| |||||||| |||||| |||||| ||| || | ||
Sbjct: 262 attgatatcttggttgtgctgctcggcgctctggacgtgggtggtgacagggctggcgag 203
Query: 123 gtactggagctcggagcagtaggacgccatggcgatctcggtgcccttgaacccgtagtc 182
|||||||||||| || |||||| |||||||| ||||||| ||||||||| ||||||||
Sbjct: 202 gtactggagctccgatgtgtaggaagccatggctatctcggcgcccttgaagccgtagtc 143
Query: 183 caggctcgggttgcggctgccggccaggttggaggtcagcccgttgttgtagaactcgtt 242
|||||||||||| ||| ||| || || || | ||| || ||||||| | |||||
Sbjct: 142 gaggctcgggttggggccaccgctgagattcgaaggcaggccaccgttgtagtaatcgtt 83
Query: 243 gaccagctcggagaactgcgcgaacatgagcttgccgatgttggcgacggcgaggcgggc 302
||| ||||| ||||| || |||||||| ||||| ||||| ||||| ||||||||
Sbjct: 82 gacgagctccgagaattgggcgaacattagcttcccgattgcggcgagagcgaggcgcag 23
Query: 303 gttgtccatggacacgccgat 323
|||||||||||| || |||||
Sbjct: 22 gttgtccatggagacaccgat 2
>gb|DR079640.1|DR079640 RTFEPL1_12_C09.g1_A029 Roots plus added iron Pinus taeda cDNA clone
RTFEPL1_12_C09_A029 5', mRNA sequence
Length = 867
Score = 113 bits (57), Expect = 2e-023
Identities = 159/193 (82%)
Strand = Plus / Minus
Query: 3 catgagcttcaggatgtcgatcgcctcggcggtcttcctggccgagacgaggcccaggga 62
|||||| || || |||||||| |||||||| | || | ||| |||| ||||||||| ||
Sbjct: 254 catgagattgagtatgtcgattgcctcggctgatttgcgggctgagatgaggcccagaga 195
Query: 63 gttcacgtcctggttgtgctgctccgcgctctgcacgtggttggtgatggggttgcccag 122
|| || || |||||||||||||| |||||||| |||||| |||||| ||| | | ||
Sbjct: 194 attgacatcttggttgtgctgctcggcgctctggacgtgggtggtgacagggctagcgag 135
Query: 123 gtactggagctcggagcagtaggacgccatggcgatctcggtgcccttgaacccgtagtc 182
|||||||||||| || |||||| |||||||| ||||||| ||||||||| ||||||||
Sbjct: 134 gtactggagctccgatgtgtaggaagccatggctatctcggcgcccttgaagccgtagtc 75
Query: 183 caggctcgggttg 195
||||||||||||
Sbjct: 74 gaggctcgggttg 62
>gb|AF013484.1|AF013484 Pinus banksiana phenylalanine ammonia-lyase (pal4) gene, partial
cds
Length = 366
Score = 113 bits (57), Expect = 2e-023
Identities = 189/233 (81%)
Strand = Plus / Minus
Query: 121 aggtactggagctcggagcagtaggacgccatggcgatctcggtgcccttgaacccgtag 180
|||||||||||||| || |||||| |||||||| ||||||| ||||||||| ||||||
Sbjct: 347 aggtactggagctccgatgtgtaggaagccatggctatctcggcgcccttgaaaccgtag 288
Query: 181 tccaggctcgggttgcggctgccggccaggttggaggtcagcccgttgttgtagaactcg 240
|| |||||||||||| ||| ||| || || || | ||| || ||||||| | |||
Sbjct: 287 tcgaggctcgggttggggccaccgctgagattcgaaggcaggccaccgttgtagtaatcg 228
Query: 241 ttgaccagctcggagaactgcgcgaacatgagcttgccgatgttggcgacggcgaggcgg 300
||||| ||||| ||||| || |||||||| ||||| ||||| ||||| ||||||||
Sbjct: 227 ttgacgagctccgagaattgggcgaacattagctttccgattgcggcgagagcgaggcgc 168
Query: 301 gcgttgtccatggacacgccgatcggggtgccctggaagttgccgccgtgcag 353
|||||||||||| || ||||| ||||| ||||||||||| |||||||||||
Sbjct: 167 aggttgtccatggagacaccgattggggtcccctggaagttcccgccgtgcag 115
>gb|AA556548.1|AA556548 403 Loblolly pine C Pinus taeda cDNA clone 3C4F, mRNA sequence
Length = 501
Score = 83.8 bits (42), Expect = 2e-014
Identities = 105/126 (83%)
Strand = Plus / Minus
Query: 228 gttgtagaactcgttgaccagctcggagaactgcgcgaacatgagcttgccgatgttggc 287
||||||| | |||||||| ||||| ||||| || |||||||| ||||| ||||| |||
Sbjct: 311 gttgtagtaatcgttgacgagctccgagaattgggcgaacattagcttcccgattgcggc 252
Query: 288 gacggcgaggcgggcgttgtccatggacacgccgatcggggtgccctggaagttgccgcc 347
|| |||||||| |||||||||||| || ||||| ||||| ||||||||||| |||||
Sbjct: 251 gagagcgaggcgcaggttgtccatggagacaccgattggggtcccctggaagttcccgcc 192
Query: 348 gtgcag 353
||||||
Sbjct: 191 gtgcag 186
Score = 42.1 bits (21), Expect = 0.054
Identities = 59/72 (81%), Gaps = 1/72 (1%)
Strand = Plus / Minus
Query: 121 aggtactggagctcggagcagtaggacgccatggcgatctcggtgcccttgaacccgtag 180
|||||||||||||| || ||||| ||||||| ||||||| ||||||||| || ||
Sbjct: 417 aggtactggagctccgangnntaggaagccatggt-atctcggcgcccttgaagccnnag 359
Query: 181 tccaggctcggg 192
|| |||||||||
Sbjct: 358 tcgaggctcggg 347
>gb|CV032516.1|CV032516 RTNACL1_8_E03.g1_A029 Roots plus added NaCl Pinus taeda cDNA clone
RTNACL1_8_E03_A029 5', mRNA sequence
Length = 712
Score = 79.8 bits (40), Expect = 2e-013
Identities = 145/180 (80%)
Strand = Plus / Minus
Query: 223 ccgttgttgtagaactcgttgaccagctcggagaactgcgcgaacatgagcttgccgatg 282
|||||||||||||| || ||||| |||||||| | ||| || ||||||||||| || |
Sbjct: 664 ccgttgttgtagaaatcattgacgagctcggacatctgtgcaaacatgagcttaccaact 605
Query: 283 ttggcgacggcgaggcgggcgttgtccatggacacgccgatcggggtgccctggaagttg 342
|||| || ||||| ||||| ||||| | ||||||| || || ||||||||||||
Sbjct: 604 gcagcgagagccaggcgtgcgttatccatagcgacgccgacaggtgtcccctggaagttg 545
Query: 343 ccgccgtgcagcgccttgccgcggaggacgtcgatgaccgggttgtcgttcacggagttg 402
|||||||| ||||||||| |||| | ||||||||| ||||||||||| |||||||||
Sbjct: 544 ccgccgtggagcgccttgttgcgggcggcgtcgatgagggggttgtcgttgacggagttg 485
>gb|DR024409.1|DR024409 STRS1_64_F07.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_64_F07_A034 5', mRNA sequence
Length = 578
Score = 79.8 bits (40), Expect = 2e-013
Identities = 145/180 (80%)
Strand = Plus / Minus
Query: 223 ccgttgttgtagaactcgttgaccagctcggagaactgcgcgaacatgagcttgccgatg 282
|||||||||||||| || ||||| |||||||| | ||| || ||||||||||| || |
Sbjct: 385 ccgttgttgtagaaatcattgacgagctcggacatctgtgcaaacatgagcttaccaact 326
Query: 283 ttggcgacggcgaggcgggcgttgtccatggacacgccgatcggggtgccctggaagttg 342
|||| || ||||| ||||| ||||| | ||||||| || || ||||||||||||
Sbjct: 325 gcagcgagagccaggcgtgcgttatccatagcgacgccgacaggtgtcccctggaagttg 266
Query: 343 ccgccgtgcagcgccttgccgcggaggacgtcgatgaccgggttgtcgttcacggagttg 402
|||||||| ||||||||| |||| | ||||||||| ||||||||||| |||||||||
Sbjct: 265 ccgccgtggagcgccttgttgcgggcggcgtcgatgagggggttgtcgttgacggagttg 206
Score = 60.0 bits (30), Expect = 2e-007
Identities = 42/46 (91%)
Strand = Plus / Minus
Query: 148 gccatggcgatctcggtgcccttgaacccgtagtccaggctcgggt 193
|||||||||||||||| |||||||| |||||||||||||| ||||
Sbjct: 460 gccatggcgatctcggcacccttgaaaccgtagtccaggctggggt 415
>gb|DR100017.1|DR100017 STRR1_61_B01.b1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_61_B01_A033 3', mRNA sequence
Length = 854
Score = 67.9 bits (34), Expect = 9e-010
Identities = 91/110 (82%)
Strand = Plus / Plus
Query: 25 gcctcggcggtcttcctggccgagacgaggcccagggagttcacgtcctggttgtgctgc 84
|||||||| ||||| ||||| |||| | ||| ||||| || || ||||||||||| ||
Sbjct: 722 gcctcggcagtctttctggcggagatcaagccgagggaattgacatcctggttgtgttgt 781
Query: 85 tccgcgctctgcacgtggttggtgatggggttgcccaggtactggagctc 134
|| |||||||| ||||| | |||| ||||||| ||||||||||||||||
Sbjct: 782 tcggcgctctggacgtgagtcgtgacggggttggccaggtactggagctc 831
>gb|DR101882.1|DR101882 STRR1_76_B02.g1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_76_B02_A033 5', mRNA sequence
Length = 749
Score = 67.9 bits (34), Expect = 9e-010
Identities = 129/161 (80%)
Strand = Plus / Minus
Query: 3 catgagcttcaggatgtcgatcgcctcggcggtcttcctggccgagacgaggcccaggga 62
|||||| || || |||||||| |||||||| | || | ||| |||| ||||||||| ||
Sbjct: 198 catgagattgagtatgtcgattgcctcggctgatttgcgggctgagatgaggcccagaga 139
Query: 63 gttcacgtcctggttgtgctgctccgcgctctgcacgtggttggtgatggggttgcccag 122
|| || || |||||||||||||| |||||||| |||||| |||||| ||| || | ||
Sbjct: 138 attgacatcttggttgtgctgctcggcgctctggacgtgggtggtgacagggctggcgag 79
Query: 123 gtactggagctcggagcagtaggacgccatggcgatctcgg 163
||| |||||||| || |||||| |||||||| ||||||
Sbjct: 78 gtaatggagctccgatgtgtaggaagccatggctntctcgg 38
>dbj|BD224286.1| Materials and methods for the modification of plant lignin content
Length = 278
Score = 67.9 bits (34), Expect = 9e-010
Identities = 91/110 (82%)
Strand = Plus / Minus
Query: 25 gcctcggcggtcttcctggccgagacgaggcccagggagttcacgtcctggttgtgctgc 84
|||||||| ||||| ||||| |||| | ||| ||||| || || ||||||||||| ||
Sbjct: 164 gcctcggcagtctttctggcggagatcaagccgagggaattgacatcctggttgtgttgt 105
Query: 85 tccgcgctctgcacgtggttggtgatggggttgcccaggtactggagctc 134
|| |||||||| ||||| | |||| ||||||| ||||||||||||||||
Sbjct: 104 tcggcgctctggacgtgagtcgtgacggggttggccaggtactggagctc 55
>gb|CF401338.1|CF401338 RTWW1_11_A01.g1_A015 Well-watered loblolly pine roots WW1 Pinus
taeda cDNA clone RTWW1_11_A01_A015 5', mRNA sequence
Length = 571
Score = 61.9 bits (31), Expect = 6e-008
Identities = 88/107 (82%)
Strand = Plus / Minus
Query: 3 catgagcttcaggatgtcgatcgcctcggcggtcttcctggccgagacgaggcccaggga 62
|||||| || || |||||||| |||||||| | || | ||| |||| ||||||||| ||
Sbjct: 111 catgagattgagtatgtcgattgcctcggctgatttgcgggctgagatgaggcccagaga 52
Query: 63 gttcacgtcctggttgtgctgctccgcgctctgcacgtggttggtga 109
|| || || |||||||||||||| |||||||| |||||| ||||||
Sbjct: 51 attgacatcttggttgtgctgctcggcgctctggacgtgggtggtga 5
>gb|DR101633.1|DR101633 STRR1_74_E10.g1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_74_E10_A033 5', mRNA sequence
Length = 572
Score = 61.9 bits (31), Expect = 6e-008
Identities = 88/107 (82%)
Strand = Plus / Minus
Query: 3 catgagcttcaggatgtcgatcgcctcggcggtcttcctggccgagacgaggcccaggga 62
|||||| || || |||||||| |||||||| | || | ||| |||| ||||||||| ||
Sbjct: 149 catgagattgagtatgtcgattgcctcggctgatttgcgggctgagatgaggcccagaga 90
Query: 63 gttcacgtcctggttgtgctgctccgcgctctgcacgtggttggtga 109
|| || || |||||||||||||| |||||||| |||||| ||||||
Sbjct: 89 attgacatcttggttgtgctgctcggcgctctggacgtgggtggtga 43
>gb|AF013483.1|AF013483 Pinus banksiana phenylalanine ammonia-lyase (pal3) gene, partial
cds
Length = 366
Score = 61.9 bits (31), Expect = 6e-008
Identities = 67/79 (84%)
Strand = Plus / Minus
Query: 106 gtgatggggttgcccaggtactggagctcggagcagtaggacgccatggcgatctcggtg 165
|||| ||||||| |||||||||||||||| || ||| | |||||||||||||||| |
Sbjct: 362 gtgacggggttggccaggtactggagctccgatgtgtaagcggccatggcgatctcggcg 303
Query: 166 cccttgaacccgtagtcca 184
|||||||| || |||||||
Sbjct: 302 cccttgaaaccatagtcca 284
Score = 56.0 bits (28), Expect = 4e-006
Identities = 43/48 (89%)
Strand = Plus / Minus
Query: 303 gttgtccatggacacgccgatcggggtgccctggaagttgccgccgtg 350
|||||||||||| || ||||| || || ||||||||||||||||||||
Sbjct: 165 gttgtccatggaaactccgatgggcgttccctggaagttgccgccgtg 118
>gb|CF473922.1|CF473922 RTWW2_19_D07.g1_A021 Well-watered loblolly pine roots WW2 Pinus
taeda cDNA clone RTWW2_19_D07_A021 5', mRNA sequence
Length = 677
Score = 60.0 bits (30), Expect = 2e-007
Identities = 42/46 (91%)
Strand = Plus / Minus
Query: 148 gccatggcgatctcggtgcccttgaacccgtagtccaggctcgggt 193
|||||||||||||||| |||||||| |||||||||||||| ||||
Sbjct: 77 gccatggcgatctcggcacccttgaaaccgtagtccaggctggggt 32
>gb|AF013482.1|AF013482 Pinus banksiana phenylalanine ammonia-lyase (pal2) gene, partial
cds
Length = 366
Score = 60.0 bits (30), Expect = 2e-007
Identities = 42/46 (91%)
Strand = Plus / Minus
Query: 148 gccatggcgatctcggtgcccttgaacccgtagtccaggctcgggt 193
|||||||||||||||| |||||||| |||||||||||||| ||||
Sbjct: 320 gccatggcgatctcggcacccttgaaaccgtagtccaggctggggt 275
Score = 56.0 bits (28), Expect = 4e-006
Identities = 142/180 (78%)
Strand = Plus / Minus
Query: 223 ccgttgttgtagaactcgttgaccagctcggagaactgcgcgaacatgagcttgccgatg 282
|||||||||||||| || ||||| ||||| || | ||| || ||||||||||| || |
Sbjct: 245 ccgttgttgtagaaatcattgacgagctccgacatctgtgcaaacatgagcttaccaact 186
Query: 283 ttggcgacggcgaggcgggcgttgtccatggacacgccgatcggggtgccctggaagttg 342
|||| || ||||| ||||| ||||| | ||||||| || || ||||||||||||
Sbjct: 185 gcagcgagagccaggcgtgcgttatccatagcgacgccgacaggtgtcccctggaagttg 126
Query: 343 ccgccgtgcagcgccttgccgcggaggacgtcgatgaccgggttgtcgttcacggagttg 402
|| ||||| ||||||||| |||| | ||||||||| ||||||||||| || ||||||
Sbjct: 125 ccaccgtggagcgccttgttgcgggcggcgtcgatgagggggttgtcgttgacagagttg 66
>gb|AF013485.1|AF013485 Pinus banksiana phenylalanine ammonia-lyase (pal5) gene, partial
cds
Length = 366
Score = 60.0 bits (30), Expect = 2e-007
Identities = 42/46 (91%)
Strand = Plus / Minus
Query: 148 gccatggcgatctcggtgcccttgaacccgtagtccaggctcgggt 193
|||||||||||||||| |||||||| |||||||||||||| ||||
Sbjct: 320 gccatggcgatctcggcacccttgaaaccgtagtccaggctggggt 275
Score = 56.0 bits (28), Expect = 4e-006
Identities = 142/180 (78%)
Strand = Plus / Minus
Query: 223 ccgttgttgtagaactcgttgaccagctcggagaactgcgcgaacatgagcttgccgatg 282
|||||||||||||| || ||||| ||||| || | ||| || ||||||||||| || |
Sbjct: 245 ccgttgttgtagaaatcattgacgagctccgacatctgtgcaaacatgagctttcccacc 186
Query: 283 ttggcgacggcgaggcgggcgttgtccatggacacgccgatcggggtgccctggaagttg 342
|||| || ||||| ||||||||||||| ||||| | || || ||||||||||||
Sbjct: 185 gcagcgagagccaggcgtgcgttgtccatggcgacgcctacaggtgtcccctggaagttg 126
Query: 343 ccgccgtgcagcgccttgccgcggaggacgtcgatgaccgggttgtcgttcacggagttg 402
|| ||||| ||||||||| |||| | |||| |||| || |||||||| |||||||||
Sbjct: 125 ccaccgtggagcgccttgttgcgggcggcgtctatgaggggattgtcgttgacggagttg 66
>gb|DR024117.1|DR024117 STRS1_62_B04.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_62_B04_A034 5', mRNA sequence
Length = 860
Score = 56.0 bits (28), Expect = 4e-006
Identities = 109/136 (80%)
Strand = Plus / Minus
Query: 58 agggagttcacgtcctggttgtgctgctccgcgctctgcacgtggttggtgatggggttg 117
|||||||| ||||| |||||||| ||||| |||||||| ||||| |||| | || |||
Sbjct: 432 agggagttgacgtcttggttgtgttgctctgcgctctgaacgtgtgtggtcaccggattg 373
Query: 118 cccaggtactggagctcggagcagtaggacgccatggcgatctcggtgcccttgaacccg 177
| ||| | |||||||| ||| || || |||||||| | ||||| |||||||| |||
Sbjct: 372 gcaaggaattggagctctgaggtatacgaggccatggctacctcggcacccttgaaaccg 313
Query: 178 tagtccaggctcgggt 193
||||||||||| ||||
Sbjct: 312 tagtccaggctggggt 297
Score = 42.1 bits (21), Expect = 0.054
Identities = 81/101 (80%)
Strand = Plus / Minus
Query: 302 cgttgtccatggacacgccgatcggggtgccctggaagttgccgccgtgcagcgccttgc 361
|||||||||||| || |||| || || |||||||| || ||||||| |||||||||
Sbjct: 188 cgttgtccatggcgactccgacaggtgtcccctggaaattaccgccgttgagcgccttgt 129
Query: 362 cgcggaggacgtcgatgaccgggttgtcgttcacggagttg 402
|| | | ||||||||| ||||||||||| |||||||||
Sbjct: 128 tgccggcggcgtcgatgatggggttgtcgttgacggagttg 88
>dbj|BD224321.1| Materials and methods for the modification of plant lignin content
Length = 684
Score = 56.0 bits (28), Expect = 4e-006
Identities = 43/48 (89%)
Strand = Plus / Minus
Query: 303 gttgtccatggacacgccgatcggggtgccctggaagttgccgccgtg 350
|||||||||||| || ||||| || || ||||||||||||||||||||
Sbjct: 660 gttgtccatggaaactccgatgggtgttccctggaagttgccgccgtg 613
>dbj|BD224373.1| Materials and methods for the modification of plant lignin content
Length = 577
Score = 56.0 bits (28), Expect = 4e-006
Identities = 43/48 (89%)
Strand = Plus / Minus
Query: 303 gttgtccatggacacgccgatcggggtgccctggaagttgccgccgtg 350
|||||||||||| || ||||| || || ||||||||||||||||||||
Sbjct: 553 gttgtccatggaaactccgatgggtgttccctggaagttgccgccgtg 506
>dbj|BD272993.1| Materials and methods for the modification of isoprenoid content,
compostition and metabolism
Length = 684
Score = 56.0 bits (28), Expect = 4e-006
Identities = 43/48 (89%)
Strand = Plus / Minus
Query: 303 gttgtccatggacacgccgatcggggtgccctggaagttgccgccgtg 350
|||||||||||| || ||||| || || ||||||||||||||||||||
Sbjct: 660 gttgtccatggaaactccgatgggtgttccctggaagttgccgccgtg 613
>gb|CO362385.1|CO362385 RTK1_3_E11.b1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_3_E11_A029 3', mRNA sequence
Length = 644
Score = 54.0 bits (27), Expect = 1e-005
Identities = 60/71 (84%)
Strand = Plus / Minus
Query: 692 agctacgatgacttcacaaacagcctccctgagaatgactgccgatacgcgatctatgat 751
||||||||||| |||||| | ||| || ||||||||||||||||| ||| | ||||||
Sbjct: 138 agctacgatgatttcacagcctcccttccggagaatgactgccgatatgcggtgtatgat 79
Query: 752 ttcgactttgt 762
|| ||||||||
Sbjct: 78 tttgactttgt 68
>gb|DR015948.1|DR015948 STRS1_6_E07.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_6_E07_A034 5', mRNA sequence
Length = 822
Score = 54.0 bits (27), Expect = 1e-005
Identities = 60/71 (84%)
Strand = Plus / Plus
Query: 692 agctacgatgacttcacaaacagcctccctgagaatgactgccgatacgcgatctatgat 751
||||||||||| |||||| | ||| || ||||||||||||||||| ||| | ||||||
Sbjct: 618 agctacgatgatttcacagcctcccttccggagaatgactgccgatatgcggtgtatgat 677
Query: 752 ttcgactttgt 762
|| ||||||||
Sbjct: 678 tttgactttgt 688
>gb|CF390008.1|CF390008 RTDR2_11_E03.g1_A021 Loblolly pine roots recovering from drought
DR2 Pinus taeda cDNA clone RTDR2_11_E03_A021 5', mRNA
sequence
Length = 680
Score = 50.1 bits (25), Expect = 2e-004
Identities = 64/77 (83%)
Strand = Plus / Minus
Query: 25 gcctcggcggtcttcctggccgagacgaggcccagggagttcacgtcctggttgtgctgc 84
|||||||| ||||| ||||| |||| | ||| ||||| || |||||||||||||| ||
Sbjct: 89 gcctcggcagtctttctggcggagatcaagccgagggaattgacgtcctggttgtgttgt 30
Query: 85 tccgcgctctgcacgtg 101
|| |||||||| |||||
Sbjct: 29 tcggcgctctggacgtg 13
>gb|CF390971.1|CF390971 RTDR3_3_G02.b1_A022 Loblolly pine roots recovering from drought DR3
Pinus taeda cDNA clone RTDR3_3_G02_A022 3', mRNA
sequence
Length = 605
Score = 50.1 bits (25), Expect = 2e-004
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 722 gagaatgactgccgatacgcgatctatgatttcgactttgt 762
||||||||||||||||| ||| | |||||||| ||||||||
Sbjct: 1 gagaatgactgccgatatgcggtgtatgattttgactttgt 41
>gb|CX648830.1|CX648830 COLD1_31_E10.b1_A029 Root cold Pinus taeda cDNA clone
COLD1_31_E10_A029 3', mRNA sequence
Length = 797
Score = 50.1 bits (25), Expect = 2e-004
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 722 gagaatgactgccgatacgcgatctatgatttcgactttgt 762
||||||||||||||||| ||| | |||||||| ||||||||
Sbjct: 218 gagaatgactgccgatatgcggtgtatgattttgactttgt 258
>gb|CX713456.1|CX713456 RTPQ1_9_B03.g1_A032 Roots treated with paraquat Pinus taeda cDNA
clone RTPQ1_9_B03_A032 5', mRNA sequence
Length = 573
Score = 50.1 bits (25), Expect = 2e-004
Identities = 76/93 (81%)
Strand = Plus / Minus
Query: 3 catgagcttcaggatgtcgatcgcctcggcggtcttcctggccgagacgaggcccaggga 62
|||||| || || |||||||| |||||||| | || | ||| |||| ||||||||| ||
Sbjct: 503 catgagattgagtatgtcgattgcctcggctgatttgcgggctgagatgaggcccagaga 444
Query: 63 gttcacgtcctggttgtgctgctccgcgctctg 95
|| || || |||||||||||||| ||||||||
Sbjct: 443 attgacatcttggttgtgctgctcggcgctctg 411
>dbj|BD224374.1| Materials and methods for the modification of plant lignin content
Length = 492
Score = 50.1 bits (25), Expect = 2e-004
Identities = 82/101 (81%)
Strand = Plus / Minus
Query: 25 gcctcggcggtcttcctggccgagacgaggcccagggagttcacgtcctggttgtgctgc 84
|||||||| ||||| ||||| |||| | ||| ||||| || || ||||||||||| ||
Sbjct: 101 gcctcggcagtctttctggcggagatcaagccgagggaattgacatcctggttgtgttgt 42
Query: 85 tccgcgctctgcacgtggttggtgatggggttgcccaggta 125
|| |||||||| ||||| | |||| ||||||| |||||||
Sbjct: 41 tcggcgctctggacgtgagtcgtgacggggttggccaggta 1
>gb|BX251368.1|BX251368 BX251368 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP048G05 similar to Actin depolymerizing
factor, mRNA sequence
Length = 678
Score = 48.1 bits (24), Expect = 9e-004
Identities = 42/48 (87%)
Strand = Plus / Plus
Query: 715 cctccctgagaatgactgccgatacgcgatctatgatttcgactttgt 762
|||||||||||| || ||||||||||| ||||||| ||||| |||||
Sbjct: 250 cctccctgagaacgattgccgatacgctgtctatgacttcgattttgt 297
>gb|BX252713.1|BX252713 BX252713 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP069F02 similar to Actin depolymerizing
factor, mRNA sequence
Length = 413
Score = 48.1 bits (24), Expect = 9e-004
Identities = 42/48 (87%)
Strand = Plus / Plus
Query: 715 cctccctgagaatgactgccgatacgcgatctatgatttcgactttgt 762
|||||||||||| || ||||||||||| ||||||| ||||| |||||
Sbjct: 224 cctccctgagaacgattgccgatacgctgtctatgacttcgattttgt 271
>gb|BX255619.1|BX255619 BX255619 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP007G09 similar to Actin depolymerizing
factor, mRNA sequence
Length = 592
Score = 48.1 bits (24), Expect = 9e-004
Identities = 42/48 (87%)
Strand = Plus / Plus
Query: 715 cctccctgagaatgactgccgatacgcgatctatgatttcgactttgt 762
|||||||||||| || ||||||||||| ||||||| ||||| |||||
Sbjct: 250 cctccctgagaacgattgccgatacgctgtctatgacttcgattttgt 297
>gb|BX679246.1|BX679246 BX679246 RS Pinus pinaster cDNA clone RS22A04, mRNA sequence
Length = 533
Score = 48.1 bits (24), Expect = 9e-004
Identities = 42/48 (87%)
Strand = Plus / Plus
Query: 715 cctccctgagaatgactgccgatacgcgatctatgatttcgactttgt 762
|||||||||||| || ||||||||||| ||||||| ||||| |||||
Sbjct: 237 cctccctgagaacgattgccgatacgctgtctatgacttcgattttgt 284
>gb|BX682680.1|BX682680 BX682680 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone 120A01 similar to Actin-depolymerizing
factor, mRNA sequence
Length = 483
Score = 48.1 bits (24), Expect = 9e-004
Identities = 42/48 (87%)
Strand = Plus / Plus
Query: 715 cctccctgagaatgactgccgatacgcgatctatgatttcgactttgt 762
|||||||||||| || ||||||||||| ||||||| ||||| |||||
Sbjct: 244 cctccctgagaacgattgccgatacgctgtctatgacttcgattttgt 291
>gb|BX682987.1|BX682987 BX682987 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone 126E06 similar to Actin-depolymerizing
factor, mRNA sequence
Length = 689
Score = 48.1 bits (24), Expect = 9e-004
Identities = 42/48 (87%)
Strand = Plus / Plus
Query: 715 cctccctgagaatgactgccgatacgcgatctatgatttcgactttgt 762
|||||||||||| || ||||||||||| ||||||| ||||| |||||
Sbjct: 241 cctccctgagaacgattgccgatacgctgtctatgacttcgattttgt 288
>gb|BX784148.1|BX784148 BX784148 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone 129G08 similar to Actin-depolymerizing
factor, mRNA sequence
Length = 595
Score = 48.1 bits (24), Expect = 9e-004
Identities = 42/48 (87%)
Strand = Plus / Minus
Query: 715 cctccctgagaatgactgccgatacgcgatctatgatttcgactttgt 762
|||||||||||| || ||||||||||| ||||||| ||||| |||||
Sbjct: 520 cctccctgagaacgattgccgatacgctgtctatgacttcgattttgt 473
>gb|H75111.1|H75111 236 PtIFG1 Pinus taeda cDNA clone 1918M, mRNA sequence
Length = 281
Score = 46.1 bits (23), Expect = 0.003
Identities = 59/71 (83%)
Strand = Plus / Plus
Query: 692 agctacgatgacttcacaaacagcctccctgagaatgactgccgatacgcgatctatgat 751
||||||||||| |||||| | ||| || ||||||||||||||||| ||| | | ||||
Sbjct: 149 agctacgatgatttcacagcctcccttccggagaatgactgccgatatgcggtgtttgat 208
Query: 752 ttcgactttgt 762
|| ||||||||
Sbjct: 209 tttgactttgt 219
>gb|BQ291010.1|BQ291010 NXRV054_E06_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV054_E06 5' similar to Arabidopsis thaliana
sequence At2g31200 actin depolymerizing factor 6 (ADF6)
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 661
Score = 46.1 bits (23), Expect = 0.003
Identities = 59/71 (83%)
Strand = Plus / Plus
Query: 692 agctacgatgacttcacaaacagcctccctgagaatgactgccgatacgcgatctatgat 751
||||||||||| |||||| | ||| || ||||||||||||||||| ||| | | ||||
Sbjct: 187 agctacgatgatttcacagcctcccttccggagaatgactgccgatatgcggtgtttgat 246
Query: 752 ttcgactttgt 762
|| ||||||||
Sbjct: 247 tttgactttgt 257
>gb|CF389630.1|CF389630 RTDR2_8_G07.g1_A021 Loblolly pine roots recovering from drought DR2
Pinus taeda cDNA clone RTDR2_8_G07_A021 5', mRNA
sequence
Length = 810
Score = 46.1 bits (23), Expect = 0.003
Identities = 59/71 (83%)
Strand = Plus / Plus
Query: 692 agctacgatgacttcacaaacagcctccctgagaatgactgccgatacgcgatctatgat 751
||||||||||| |||||| | ||| || ||||||||||||||||| ||| | | ||||
Sbjct: 408 agctacgatgatttcacagcctcccttccggagaatgactgccgatatgcggtgtttgat 467
Query: 752 ttcgactttgt 762
|| ||||||||
Sbjct: 468 tttgactttgt 478
>gb|CF394227.1|CF394227 RTDS2_4_D03.b1_A021 Drought-stressed loblolly pine roots DS2 Pinus
taeda cDNA clone RTDS2_4_D03_A021 3', mRNA sequence
Length = 645
Score = 46.1 bits (23), Expect = 0.003
Identities = 59/71 (83%)
Strand = Plus / Plus
Query: 692 agctacgatgacttcacaaacagcctccctgagaatgactgccgatacgcgatctatgat 751
||||||||||| |||||| | ||| || ||||||||||||||||| ||| | | ||||
Sbjct: 40 agctacgatgatttcacagcctcccttccggagaatgactgccgatatgcggtgtttgat 99
Query: 752 ttcgactttgt 762
|| ||||||||
Sbjct: 100 tttgactttgt 110
>gb|DR160726.1|DR160726 RTFE1_7_E06.g1_A029 Roots minus iron Pinus taeda cDNA clone
RTFE1_7_E06_A029 5', mRNA sequence
Length = 932
Score = 46.1 bits (23), Expect = 0.003
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 75 gttgtgctgctccgcgctctgcacgtggttggtga 109
|||||||||||| |||||||| |||||| ||||||
Sbjct: 41 gttgtgctgctcggcgctctggacgtgggtggtga 7
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 119,566
Number of Sequences: 355925
Number of extensions: 119566
Number of successful extensions: 36491
Number of sequences better than 0.5: 100
Number of HSP's better than 0.5 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 36285
Number of HSP's gapped (non-prelim): 193
length of query: 1252
length of database: 217,277,237
effective HSP length: 19
effective length of query: 1233
effective length of database: 210,514,662
effective search space: 259564578246
effective search space used: 259564578246
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)