BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 131543.2.12
         (621 letters)

Database: Pinus_nucl_with_EST.fasta 
           355,925 sequences; 217,277,237 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|DN627075.1|DN627075  EST977891 Subtracted pine embryo lib...    40   0.10 
gb|DN633693.1|DN633693  EST984509 Subtracted pine embryo lib...    40   0.10 
gb|AF335097.1|  Pinus taeda clone PtTX4199 microsatellite se...    40   0.10 
gb|DR093200.1|DR093200  STRR1_6_E09.g1_A033 Stem Response Re...    38   0.41 

>gb|DN627075.1|DN627075 EST977891 Subtracted pine embryo library, Lib_C Pinus taeda cDNA
           clone PTAAD96, mRNA sequence
          Length = 403

 Score = 40.1 bits (20), Expect = 0.10
 Identities = 59/72 (81%)
 Strand = Plus / Plus

                                                                       
Query: 87  gatggccaagtcgaagaaccacacggcgcataaccaatcgttcaaggcgcacaagaacgg 146
           |||||| ||||| ||||| ||||| || ||||||||||| | ||||   |||||||| ||
Sbjct: 79  gatggcaaagtcaaagaatcacacagctcataaccaatcttacaagaatcacaagaatgg 138

                       
Query: 147 catcaagaagcc 158
            || ||||||||
Sbjct: 139 aattaagaagcc 150



>gb|DN633693.1|DN633693 EST984509 Subtracted pine embryo library, Lib_C Pinus taeda cDNA
           clone PTADA52, mRNA sequence
          Length = 394

 Score = 40.1 bits (20), Expect = 0.10
 Identities = 59/72 (81%)
 Strand = Plus / Plus

                                                                       
Query: 87  gatggccaagtcgaagaaccacacggcgcataaccaatcgttcaaggcgcacaagaacgg 146
           |||||| ||||| ||||| ||||| || ||||||||||| | ||||   |||||||| ||
Sbjct: 70  gatggcaaagtcaaagaatcacacagctcataaccaatcttacaagaatcacaagaatgg 129

                       
Query: 147 catcaagaagcc 158
            || ||||||||
Sbjct: 130 aattaagaagcc 141



>gb|AF335097.1| Pinus taeda clone PtTX4199 microsatellite sequence
          Length = 450

 Score = 40.1 bits (20), Expect = 0.10
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 544 ttgttcggtttgcaagggat 563
           ||||||||||||||||||||
Sbjct: 154 ttgttcggtttgcaagggat 173



>gb|DR093200.1|DR093200 STRR1_6_E09.g1_A033 Stem Response Resistant Pinus taeda cDNA clone
           STRR1_6_E09_A033 5', mRNA sequence
          Length = 851

 Score = 38.2 bits (19), Expect = 0.41
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 423 aatttaattaaaaccatca 441
           |||||||||||||||||||
Sbjct: 467 aatttaattaaaaccatca 485



  Database: Pinus_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:45 PM
  Number of letters in database: 217,277,237
  Number of sequences in database:  355,925
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 69,797
Number of Sequences: 355925
Number of extensions: 69797
Number of successful extensions: 22318
Number of sequences better than  0.5: 4
Number of HSP's better than  0.5 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 22312
Number of HSP's gapped (non-prelim): 6
length of query: 621
length of database: 217,277,237
effective HSP length: 19
effective length of query: 602
effective length of database: 210,514,662
effective search space: 126729826524
effective search space used: 126729826524
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)