BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 131537.2.472
(1282 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AL751260.1|AL751260 AL751260 RS Pinus pinaster cDNA clon... 70 2e-010
gb|BM367715.1|BM367715 NXLV_053_F05_F NXLV (Nsf Xylem Late ... 70 2e-010
gb|CF670137.1|CF670137 RTCNT1_48_G07.b1_A029 Root control P... 70 2e-010
gb|CO360994.1|CO360994 NDL2_1_H04.g1_A029 Needles control 2... 70 2e-010
gb|DR687657.1|DR687657 EST1077739 Normalized pine embryo li... 70 2e-010
gb|DR690264.1|DR690264 EST1080350 Normalized pine embryo li... 70 2e-010
gb|DR021816.1|DR021816 STRS1_47_C12.b1_A034 Shoot tip pitch... 68 1e-009
gb|DN461735.1|DN461735 EST957534 Sequencing ESTs from loblo... 66 4e-009
gb|DT626901.1|DT626901 EST1159977 Sequencing ESTs from lobl... 66 4e-009
gb|CF401483.1|CF401483 RTWW1_12_A09.g1_A015 Well-watered lo... 64 2e-008
gb|CF402604.1|CF402604 RTWW1_21_A06.g1_A015 Well-watered lo... 64 2e-008
gb|DR018964.1|DR018964 STRS1_27_B02.b1_A034 Shoot tip pitch... 64 2e-008
gb|DR056676.1|DR056676 RTCA1_31_G06.g1_A029 Roots minus cal... 64 2e-008
gb|DN626592.1|DN626592 EST977408 Subtracted pine embryo lib... 58 9e-007
gb|BG040296.1|BG040296 NXSI_110_G03_F NXSI (Nsf Xylem Side ... 50 2e-004
gb|BG040301.1|BG040301 NXSI_110_G06_F NXSI (Nsf Xylem Side ... 50 2e-004
gb|BE761823.1|BE761823 NXCI_070_C01_F NXCI (Nsf Xylem Compr... 48 0.001
gb|BE761838.1|BE761838 NXCI_070_D09_F NXCI (Nsf Xylem Compr... 48 0.001
gb|BE761844.1|BE761844 NXCI_070_E03_F NXCI (Nsf Xylem Compr... 48 0.001
gb|BE761863.1|BE761863 NXCI_070_G01_F NXCI (Nsf Xylem Compr... 48 0.001
gb|BE761876.1|BE761876 NXCI_070_H09_F NXCI (Nsf Xylem Compr... 48 0.001
gb|BG040246.1|BG040246 NXSI_110_C05_F NXSI (Nsf Xylem Side ... 48 0.001
gb|BG040247.1|BG040247 NXSI_110_B12_F NXSI (Nsf Xylem Side ... 48 0.001
gb|BG040257.1|BG040257 NXSI_110_C10_F NXSI (Nsf Xylem Side ... 48 0.001
gb|BG040265.1|BG040265 NXSI_110_D05_F NXSI (Nsf Xylem Side ... 48 0.001
gb|BG040269.1|BG040269 NXSI_110_D08_F NXSI (Nsf Xylem Side ... 48 0.001
gb|BG040299.1|BG040299 NXSI_110_H02_F NXSI (Nsf Xylem Side ... 48 0.001
gb|BQ696828.1|BQ696828 NXPV_045_H02_F NXPV (Nsf Xylem Plani... 48 0.001
gb|BQ696830.1|BQ696830 NXPV_045_G12_F NXPV (Nsf Xylem Plani... 48 0.001
gb|CD022336.1|CD022336 NXPV_045_H04_F NXPV (Nsf Xylem Plani... 48 0.001
gb|BE761807.1|BE761807 NXCI_070_A07_F NXCI (Nsf Xylem Compr... 46 0.004
gb|BE761809.1|BE761809 NXCI_070_A09_F NXCI (Nsf Xylem Compr... 46 0.004
gb|BE761813.1|BE761813 NXCI_070_B02_F NXCI (Nsf Xylem Compr... 46 0.004
gb|BE761815.1|BE761815 NXCI_070_B04_F NXCI (Nsf Xylem Compr... 46 0.004
gb|BE761817.1|BE761817 NXCI_070_B06_F NXCI (Nsf Xylem Compr... 46 0.004
gb|BE761818.1|BE761818 NXCI_070_B07_F NXCI (Nsf Xylem Compr... 46 0.004
gb|BE761819.1|BE761819 NXCI_070_B08_F NXCI (Nsf Xylem Compr... 46 0.004
gb|BE761832.1|BE761832 NXCI_070_D03_F NXCI (Nsf Xylem Compr... 46 0.004
gb|BE761834.1|BE761834 NXCI_070_D05_F NXCI (Nsf Xylem Compr... 46 0.004
gb|BE761842.1|BE761842 NXCI_070_E01_F NXCI (Nsf Xylem Compr... 46 0.004
gb|BE761850.1|BE761850 NXCI_070_E12_F NXCI (Nsf Xylem Compr... 46 0.004
gb|BE761853.1|BE761853 NXCI_070_F03_F NXCI (Nsf Xylem Compr... 46 0.004
gb|BE761856.1|BE761856 NXCI_070_F06_F NXCI (Nsf Xylem Compr... 46 0.004
gb|BE761861.1|BE761861 NXCI_070_F11_F NXCI (Nsf Xylem Compr... 46 0.004
gb|BE761866.1|BE761866 NXCI_070_G06_F NXCI (Nsf Xylem Compr... 46 0.004
gb|BE761868.1|BE761868 NXCI_070_G09_F NXCI (Nsf Xylem Compr... 46 0.004
gb|BE761870.1|BE761870 NXCI_070_G12_F NXCI (Nsf Xylem Compr... 46 0.004
gb|BG040229.1|BG040229 NXSI_110_A07_F NXSI (Nsf Xylem Side ... 46 0.004
gb|BG040230.1|BG040230 NXSI_110_A01_F NXSI (Nsf Xylem Side ... 46 0.004
gb|BG040234.1|BG040234 NXSI_110_A09_F NXSI (Nsf Xylem Side ... 46 0.004
gb|BG040235.1|BG040235 NXSI_110_A10_F NXSI (Nsf Xylem Side ... 46 0.004
gb|BG040240.1|BG040240 NXSI_110_B01_F NXSI (Nsf Xylem Side ... 46 0.004
gb|BG040243.1|BG040243 NXSI_110_B11_F NXSI (Nsf Xylem Side ... 46 0.004
gb|BG040248.1|BG040248 NXSI_110_B10_F NXSI (Nsf Xylem Side ... 46 0.004
gb|BG040253.1|BG040253 NXSI_110_D03_F NXSI (Nsf Xylem Side ... 46 0.004
gb|BG040262.1|BG040262 NXSI_110_D01_F NXSI (Nsf Xylem Side ... 46 0.004
gb|BG040263.1|BG040263 NXSI_110_D07_F NXSI (Nsf Xylem Side ... 46 0.004
gb|BG040264.1|BG040264 NXSI_110_D02_F NXSI (Nsf Xylem Side ... 46 0.004
gb|BG040266.1|BG040266 NXSI_110_D09_F NXSI (Nsf Xylem Side ... 46 0.004
gb|BG040270.1|BG040270 NXSI_110_E02_F NXSI (Nsf Xylem Side ... 46 0.004
gb|BG040271.1|BG040271 NXSI_110_D10_F NXSI (Nsf Xylem Side ... 46 0.004
gb|BG040277.1|BG040277 NXSI_110_E06_F NXSI (Nsf Xylem Side ... 46 0.004
gb|BG040285.1|BG040285 NXSI_110_F04_F NXSI (Nsf Xylem Side ... 46 0.004
gb|BG040290.1|BG040290 NXSI_110_F07_F NXSI (Nsf Xylem Side ... 46 0.004
gb|BG040291.1|BG040291 NXSI_110_F06_F NXSI (Nsf Xylem Side ... 46 0.004
gb|BG040292.1|BG040292 NXSI_110_F08_F NXSI (Nsf Xylem Side ... 46 0.004
gb|BG040294.1|BG040294 NXSI_110_G07_F NXSI (Nsf Xylem Side ... 46 0.004
gb|BG040297.1|BG040297 NXSI_110_G02_F NXSI (Nsf Xylem Side ... 46 0.004
gb|BG040300.1|BG040300 NXSI_110_G04_F NXSI (Nsf Xylem Side ... 46 0.004
gb|BG040303.1|BG040303 NXSI_110_G12_F NXSI (Nsf Xylem Side ... 46 0.004
gb|BG040304.1|BG040304 NXSI_110_G10_F NXSI (Nsf Xylem Side ... 46 0.004
gb|BG040306.1|BG040306 NXSI_110_G11_F NXSI (Nsf Xylem Side ... 46 0.004
gb|BG040309.1|BG040309 NXSI_110_H05_F NXSI (Nsf Xylem Side ... 46 0.004
gb|BG040312.1|BG040312 NXSI_110_H06_F NXSI (Nsf Xylem Side ... 46 0.004
gb|BG040313.1|BG040313 NXSI_110_H07_F NXSI (Nsf Xylem Side ... 46 0.004
gb|BG040317.1|BG040317 NXSI_110_H10_F NXSI (Nsf Xylem Side ... 46 0.004
gb|BQ696827.1|BQ696827 NXPV_045_G09_F NXPV (Nsf Xylem Plani... 46 0.004
gb|BQ696829.1|BQ696829 NXPV_045_G10_F NXPV (Nsf Xylem Plani... 46 0.004
gb|BQ696831.1|BQ696831 NXPV_045_H03_F NXPV (Nsf Xylem Plani... 46 0.004
gb|BQ696832.1|BQ696832 NXPV_045_H07_F NXPV (Nsf Xylem Plani... 46 0.004
gb|BQ696834.1|BQ696834 NXPV_045_H09_F NXPV (Nsf Xylem Plani... 46 0.004
gb|BQ696835.1|BQ696835 NXPV_045_H12_F NXPV (Nsf Xylem Plani... 46 0.004
gb|CD022334.1|CD022334 NXPV_045_H06_F NXPV (Nsf Xylem Plani... 46 0.004
gb|CD022335.1|CD022335 NXPV_045_G11_F NXPV (Nsf Xylem Plani... 46 0.004
gb|CD022338.1|CD022338 NXPV_045_H11_F NXPV (Nsf Xylem Plani... 46 0.004
gb|BE761803.1|BE761803 NXCI_070_A04_F NXCI (Nsf Xylem Compr... 44 0.014
gb|BE761804.1|BE761804 NXCI_070_A02_F NXCI (Nsf Xylem Compr... 44 0.014
gb|BE761805.1|BE761805 NXCI_070_A01_F NXCI (Nsf Xylem Compr... 44 0.014
gb|BE761806.1|BE761806 NXCI_070_A06_F NXCI (Nsf Xylem Compr... 44 0.014
gb|BE761808.1|BE761808 NXCI_070_A08_F NXCI (Nsf Xylem Compr... 44 0.014
gb|BE761812.1|BE761812 NXCI_070_B01_F NXCI (Nsf Xylem Compr... 44 0.014
gb|BE761814.1|BE761814 NXCI_070_B03_F NXCI (Nsf Xylem Compr... 44 0.014
gb|BE761816.1|BE761816 NXCI_070_B05_F NXCI (Nsf Xylem Compr... 44 0.014
gb|BE761820.1|BE761820 NXCI_070_B10_F NXCI (Nsf Xylem Compr... 44 0.014
gb|BE761821.1|BE761821 NXCI_070_B11_F NXCI (Nsf Xylem Compr... 44 0.014
gb|BE761822.1|BE761822 NXCI_070_B12_F NXCI (Nsf Xylem Compr... 44 0.014
gb|BE761824.1|BE761824 NXCI_070_C02_F NXCI (Nsf Xylem Compr... 44 0.014
gb|BE761825.1|BE761825 NXCI_070_C03_F NXCI (Nsf Xylem Compr... 44 0.014
gb|BE761826.1|BE761826 NXCI_070_C05_F NXCI (Nsf Xylem Compr... 44 0.014
gb|BE761827.1|BE761827 NXCI_070_C04_F NXCI (Nsf Xylem Compr... 44 0.014
gb|BE761828.1|BE761828 NXCI_070_C06_F NXCI (Nsf Xylem Compr... 44 0.014
gb|BE761829.1|BE761829 NXCI_070_C07_F NXCI (Nsf Xylem Compr... 44 0.014
gb|BE761830.1|BE761830 NXCI_070_D01_F NXCI (Nsf Xylem Compr... 44 0.014
gb|BE761831.1|BE761831 NXCI_070_D02_F NXCI (Nsf Xylem Compr... 44 0.014
gb|BE761833.1|BE761833 NXCI_070_D04_F NXCI (Nsf Xylem Compr... 44 0.014
gb|BE761835.1|BE761835 NXCI_070_D06_F NXCI (Nsf Xylem Compr... 44 0.014
gb|BE761836.1|BE761836 NXCI_070_D07_F NXCI (Nsf Xylem Compr... 44 0.014
gb|BE761837.1|BE761837 NXCI_070_D08_F NXCI (Nsf Xylem Compr... 44 0.014
gb|BE761840.1|BE761840 NXCI_070_D11_F NXCI (Nsf Xylem Compr... 44 0.014
gb|BE761841.1|BE761841 NXCI_070_D12_F NXCI (Nsf Xylem Compr... 44 0.014
gb|BE761843.1|BE761843 NXCI_070_E02_F NXCI (Nsf Xylem Compr... 44 0.014
gb|BE761845.1|BE761845 NXCI_070_E04_F NXCI (Nsf Xylem Compr... 44 0.014
gb|BE761846.1|BE761846 NXCI_070_E05_F NXCI (Nsf Xylem Compr... 44 0.014
gb|BE761847.1|BE761847 NXCI_070_E06_F NXCI (Nsf Xylem Compr... 44 0.014
gb|BE761848.1|BE761848 NXCI_070_E10_F NXCI (Nsf Xylem Compr... 44 0.014
gb|BE761849.1|BE761849 NXCI_070_E11_F NXCI (Nsf Xylem Compr... 44 0.014
gb|BE761851.1|BE761851 NXCI_070_F01_F NXCI (Nsf Xylem Compr... 44 0.014
gb|BE761854.1|BE761854 NXCI_070_F04_F NXCI (Nsf Xylem Compr... 44 0.014
gb|BE761855.1|BE761855 NXCI_070_F05_F NXCI (Nsf Xylem Compr... 44 0.014
gb|BE761857.1|BE761857 NXCI_070_F07_F NXCI (Nsf Xylem Compr... 44 0.014
gb|BE761858.1|BE761858 NXCI_070_F08_F NXCI (Nsf Xylem Compr... 44 0.014
gb|BE761859.1|BE761859 NXCI_070_F09_F NXCI (Nsf Xylem Compr... 44 0.014
gb|BE761860.1|BE761860 NXCI_070_F10_F NXCI (Nsf Xylem Compr... 44 0.014
gb|BE761862.1|BE761862 NXCI_070_F12_F NXCI (Nsf Xylem Compr... 44 0.014
gb|BE761864.1|BE761864 NXCI_070_G04_F NXCI (Nsf Xylem Compr... 44 0.014
gb|BE761865.1|BE761865 NXCI_070_G05_F NXCI (Nsf Xylem Compr... 44 0.014
gb|BE761867.1|BE761867 NXCI_070_G07_F NXCI (Nsf Xylem Compr... 44 0.014
gb|BE761871.1|BE761871 NXCI_070_H02_F NXCI (Nsf Xylem Compr... 44 0.014
gb|BE761872.1|BE761872 NXCI_070_H04_F NXCI (Nsf Xylem Compr... 44 0.014
gb|BE761873.1|BE761873 NXCI_070_H05_F NXCI (Nsf Xylem Compr... 44 0.014
gb|BE761874.1|BE761874 NXCI_070_H06_F NXCI (Nsf Xylem Compr... 44 0.014
gb|BE761875.1|BE761875 NXCI_070_H07_F NXCI (Nsf Xylem Compr... 44 0.014
gb|BE761877.1|BE761877 NXCI_070_H10_F NXCI (Nsf Xylem Compr... 44 0.014
gb|BG040225.1|BG040225 NXSI_110_A11_F NXSI (Nsf Xylem Side ... 44 0.014
gb|BG040226.1|BG040226 NXSI_110_A03_F NXSI (Nsf Xylem Side ... 44 0.014
gb|BG040227.1|BG040227 NXSI_110_A04_F NXSI (Nsf Xylem Side ... 44 0.014
gb|BG040228.1|BG040228 NXSI_110_A05_F NXSI (Nsf Xylem Side ... 44 0.014
gb|BG040231.1|BG040231 NXSI_110_A08_F NXSI (Nsf Xylem Side ... 44 0.014
gb|BG040232.1|BG040232 NXSI_110_A02_F NXSI (Nsf Xylem Side ... 44 0.014
gb|BG040233.1|BG040233 NXSI_110_B05_F NXSI (Nsf Xylem Side ... 44 0.014
gb|BG040236.1|BG040236 NXSI_110_A12_F NXSI (Nsf Xylem Side ... 44 0.014
gb|BG040237.1|BG040237 NXSI_110_B02_F NXSI (Nsf Xylem Side ... 44 0.014
gb|BG040238.1|BG040238 NXSI_110_B07_F NXSI (Nsf Xylem Side ... 44 0.014
gb|BG040239.1|BG040239 NXSI_110_B04_F NXSI (Nsf Xylem Side ... 44 0.014
gb|BG040241.1|BG040241 NXSI_110_B09_F NXSI (Nsf Xylem Side ... 44 0.014
gb|BG040242.1|BG040242 NXSI_110_B06_F NXSI (Nsf Xylem Side ... 44 0.014
gb|BG040245.1|BG040245 NXSI_110_B08_F NXSI (Nsf Xylem Side ... 44 0.014
gb|BG040249.1|BG040249 NXSI_110_C03_F NXSI (Nsf Xylem Side ... 44 0.014
gb|BG040250.1|BG040250 NXSI_110_C04_F NXSI (Nsf Xylem Side ... 44 0.014
gb|BG040251.1|BG040251 NXSI_110_C01_F NXSI (Nsf Xylem Side ... 44 0.014
gb|BG040252.1|BG040252 NXSI_110_C08_F NXSI (Nsf Xylem Side ... 44 0.014
gb|BG040255.1|BG040255 NXSI_110_C11_F NXSI (Nsf Xylem Side ... 44 0.014
gb|BG040256.1|BG040256 NXSI_110_C06_F NXSI (Nsf Xylem Side ... 44 0.014
gb|BG040258.1|BG040258 NXSI_110_C09_F NXSI (Nsf Xylem Side ... 44 0.014
gb|BG040259.1|BG040259 NXSI_110_D04_F NXSI (Nsf Xylem Side ... 44 0.014
gb|BG040260.1|BG040260 NXSI_110_C12_F NXSI (Nsf Xylem Side ... 44 0.014
gb|BG040267.1|BG040267 NXSI_110_D06_F NXSI (Nsf Xylem Side ... 44 0.014
gb|BG040268.1|BG040268 NXSI_110_D11_F NXSI (Nsf Xylem Side ... 44 0.014
gb|BG040280.1|BG040280 NXSI_110_E09_F NXSI (Nsf Xylem Side ... 44 0.014
gb|BG040283.1|BG040283 NXSI_110_F03_F NXSI (Nsf Xylem Side ... 44 0.014
gb|BG040286.1|BG040286 NXSI_110_F01_F NXSI (Nsf Xylem Side ... 44 0.014
gb|BG040287.1|BG040287 NXSI_110_F02_F NXSI (Nsf Xylem Side ... 44 0.014
gb|BG040288.1|BG040288 NXSI_110_F05_F NXSI (Nsf Xylem Side ... 44 0.014
gb|BG040289.1|BG040289 NXSI_110_F09_F NXSI (Nsf Xylem Side ... 44 0.014
gb|BG040293.1|BG040293 NXSI_110_F12_F NXSI (Nsf Xylem Side ... 44 0.014
gb|BG040295.1|BG040295 NXSI_110_F11_F NXSI (Nsf Xylem Side ... 44 0.014
gb|BG040244.1|BG040244 NXSI_110_B03_F NXSI (Nsf Xylem Side ... 42 0.056
gb|BG040261.1|BG040261 NXSI_110_E07_F NXSI (Nsf Xylem Side ... 42 0.056
gb|BG040273.1|BG040273 NXSI_110_D12_F NXSI (Nsf Xylem Side ... 42 0.056
gb|BG040274.1|BG040274 NXSI_110_E04_F NXSI (Nsf Xylem Side ... 42 0.056
gb|BG040275.1|BG040275 NXSI_110_E03_F NXSI (Nsf Xylem Side ... 42 0.056
gb|BG040279.1|BG040279 NXSI_110_E05_F NXSI (Nsf Xylem Side ... 42 0.056
gb|BG040284.1|BG040284 NXSI_110_E11_F NXSI (Nsf Xylem Side ... 42 0.056
gb|BG040298.1|BG040298 NXSI_110_G01_F NXSI (Nsf Xylem Side ... 42 0.056
gb|BG040305.1|BG040305 NXSI_110_G05_F NXSI (Nsf Xylem Side ... 42 0.056
gb|BG040308.1|BG040308 NXSI_110_H01_F NXSI (Nsf Xylem Side ... 42 0.056
gb|BM158193.1|BM158193 NXLV_030_F12_F NXLV (Nsf Xylem Late ... 42 0.056
gb|CF402526.1|CF402526 RTWW1_21_A06.b1_A015 Well-watered lo... 42 0.056
gb|DR019045.1|DR019045 STRS1_27_B02.g1_A034 Shoot tip pitch... 42 0.056
gb|DR056593.1|DR056593 RTCA1_31_G06.b1_A029 Roots minus cal... 42 0.056
gb|DR097204.1|DR097204 STRR1_33_F02.b1_A033 Stem Response R... 42 0.056
gb|DR168989.1|DR168989 RTPHOS1_29_E08.b1_A029 Roots minus p... 42 0.056
gb|BX680873.1|BX680873 BX680873 RS Pinus pinaster cDNA clon... 40 0.22
gb|BX681482.1|BX681482 BX681482 RS Pinus pinaster cDNA clon... 40 0.22
gb|CR393600.1|CR393600 CR393600 RN Pinus pinaster cDNA clon... 40 0.22
gb|CX649911.1|CX649911 COLD1_42_F08.b1_A029 Root cold Pinus... 40 0.22
gb|DR090726.1|DR090726 RTAL1_17_B04.b1_A029 Roots plus adde... 40 0.22
>gb|AL751260.1|AL751260 AL751260 RS Pinus pinaster cDNA clone RS06G12 similar to CARRIER,
mRNA sequence
Length = 697
Score = 69.9 bits (35), Expect = 2e-010
Identities = 101/123 (82%)
Strand = Plus / Minus
Query: 794 tgcatgaaacataccacggtactggtagggagatttgtctgtctgaacagtgatccttcc 853
|||||| ||||| ||||||||||| || || || || |||||||| ||||| | ||||||
Sbjct: 637 tgcatggaacattccacggtactgataaggtgagttttctgtctgtacagttaaccttcc 578
Query: 854 cctaaccatatccatcgggtaagtagcagacatagctatgataccagcacatgctccagc 913
| |||||| ||||| || || || ||||||||||| || || || ||||||||||| ||
Sbjct: 577 gcgaaccatgtccattggatatgttgcagacatagcaattattcctgcacatgctcctgc 518
Query: 914 tcc 916
|||
Sbjct: 517 tcc 515
Score = 63.9 bits (32), Expect = 2e-008
Identities = 50/56 (89%)
Strand = Plus / Minus
Query: 1020 gcagaatttggaacaatccttgcacaattggtaccattgcccttgaaaagtccacg 1075
||||||||||| || ||||| ||||||||||||||||| || || |||||||||||
Sbjct: 411 gcagaatttggtactatcctggcacaattggtaccatttcctttaaaaagtccacg 356
Score = 50.1 bits (25), Expect = 2e-004
Identities = 64/77 (83%)
Strand = Plus / Minus
Query: 1140 ggattttgaacctgaagcaatattttcaatcgttcaagtggagcaacagcagtacgagac 1199
||||||||||||||||| | ||||| | ||| || | || || ||||| |||||||||
Sbjct: 291 ggattttgaacctgaagtagaattttaagtcgctctaaaggggctacagctgtacgagac 232
Query: 1200 actccgcctgctacgcc 1216
||||| |||||||||||
Sbjct: 231 actccacctgctacgcc 215
>gb|BM367715.1|BM367715 NXLV_053_F05_F NXLV (Nsf Xylem Late wood Vertical) Pinus taeda cDNA
clone NXLV_053_F05 5' similar to Arabidopsis thaliana
sequence At4g01100 putative carrier protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 724
Score = 69.9 bits (35), Expect = 2e-010
Identities = 101/123 (82%)
Strand = Plus / Minus
Query: 794 tgcatgaaacataccacggtactggtagggagatttgtctgtctgaacagtgatccttcc 853
|||||| ||||| ||||||||||| || || || || |||||||| ||||| | ||||||
Sbjct: 296 tgcatggaacattccacggtactgataaggtgagttttctgtctgtacagttaaccttcc 237
Query: 854 cctaaccatatccatcgggtaagtagcagacatagctatgataccagcacatgctccagc 913
| |||||| ||||| || || || ||||||||||| || || || ||||||||||| ||
Sbjct: 236 acgaaccatgtccattggatatgttgcagacatagcaattattcctgcacatgctcctgc 177
Query: 914 tcc 916
|||
Sbjct: 176 tcc 174
Score = 58.0 bits (29), Expect = 9e-007
Identities = 47/53 (88%)
Strand = Plus / Minus
Query: 1020 gcagaatttggaacaatccttgcacaattggtaccattgcccttgaaaagtcc 1072
||||||||||| || ||||| ||||||||||||||||| || || ||||||||
Sbjct: 70 gcagaatttggtactatcctggcacaattggtaccatttcctttaaaaagtcc 18
>gb|CF670137.1|CF670137 RTCNT1_48_G07.b1_A029 Root control Pinus taeda cDNA clone
RTCNT1_48_G07_A029 3', mRNA sequence
Length = 654
Score = 69.9 bits (35), Expect = 2e-010
Identities = 101/123 (82%)
Strand = Plus / Minus
Query: 794 tgcatgaaacataccacggtactggtagggagatttgtctgtctgaacagtgatccttcc 853
|||||| ||||| ||||||||||| || || || || |||||||| ||||| | ||||||
Sbjct: 124 tgcatggaacattccacggtactgataaggtgagttttctgtctgtacagttaaccttcc 65
Query: 854 cctaaccatatccatcgggtaagtagcagacatagctatgataccagcacatgctccagc 913
| |||||| ||||| || || || ||||||||||| || || || ||||||||||| ||
Sbjct: 64 acgaaccatgtccattggatatgttgcagacatagcaattattcctgcacatgctcctgc 5
Query: 914 tcc 916
|||
Sbjct: 4 tcc 2
Score = 42.1 bits (21), Expect = 0.056
Identities = 69/85 (81%)
Strand = Plus / Minus
Query: 520 tccaaccaaccatctgcattcttctcctgatgacatcaagcgggtatgcaacagtctggc 579
|||| |||||||| ||||||||||||| || |||||||| || || || ||||| || |
Sbjct: 398 tccacccaaccatttgcattcttctccgtattacatcaagaggataagccacagtttgtc 339
Query: 580 caatggttcccgccacagctccaca 604
||| ||||| || ||||||||||
Sbjct: 338 caacagttcctgctgcagctccaca 314
>gb|CO360994.1|CO360994 NDL2_1_H04.g1_A029 Needles control 2 Pinus taeda cDNA clone
NDL2_1_H04_A029 5', mRNA sequence
Length = 816
Score = 69.9 bits (35), Expect = 2e-010
Identities = 101/123 (82%)
Strand = Plus / Minus
Query: 794 tgcatgaaacataccacggtactggtagggagatttgtctgtctgaacagtgatccttcc 853
|||||| ||||| ||||||||||| || || || || |||||||| ||||| | ||||||
Sbjct: 582 tgcatggaacattccacggtactgataaggtgagttttctgtctgtacagttaaccttcc 523
Query: 854 cctaaccatatccatcgggtaagtagcagacatagctatgataccagcacatgctccagc 913
| |||||| ||||| || || || ||||||||||| || || || ||||||||||| ||
Sbjct: 522 acgaaccatgtccattggatatgttgcagacatagcaattattcctgcacatgctcctgc 463
Query: 914 tcc 916
|||
Sbjct: 462 tcc 460
Score = 63.9 bits (32), Expect = 2e-008
Identities = 50/56 (89%)
Strand = Plus / Minus
Query: 1020 gcagaatttggaacaatccttgcacaattggtaccattgcccttgaaaagtccacg 1075
||||||||||| || ||||| ||||||||||||||||| || || |||||||||||
Sbjct: 356 gcagaatttggtactatcctggcacaattggtaccatttcctttaaaaagtccacg 301
Score = 58.0 bits (29), Expect = 9e-007
Identities = 65/77 (84%)
Strand = Plus / Minus
Query: 1140 ggattttgaacctgaagcaatattttcaatcgttcaagtggagcaacagcagtacgagac 1199
||||||||||||||||||| ||||| | ||| || | || || ||||| |||||||||
Sbjct: 236 ggattttgaacctgaagcagaattttaagtcgctctaaaggggctacagctgtacgagac 177
Query: 1200 actccgcctgctacgcc 1216
||||| |||||||||||
Sbjct: 176 actccacctgctacgcc 160
>gb|DR687657.1|DR687657 EST1077739 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWABV06 3' end, mRNA sequence
Length = 852
Score = 69.9 bits (35), Expect = 2e-010
Identities = 101/123 (82%)
Strand = Plus / Minus
Query: 794 tgcatgaaacataccacggtactggtagggagatttgtctgtctgaacagtgatccttcc 853
|||||| ||||| ||||||||||| || || || || |||||||| ||||| | ||||||
Sbjct: 469 tgcatggaacattccacggtactgataaggtgagttttctgtctgtacagttaaccttcc 410
Query: 854 cctaaccatatccatcgggtaagtagcagacatagctatgataccagcacatgctccagc 913
| |||||| ||||| || || || ||||||||||| || || || ||||||||||| ||
Sbjct: 409 acgaaccatgtccattggatatgttgcagacatagcaattattcctgcacatgctcctgc 350
Query: 914 tcc 916
|||
Sbjct: 349 tcc 347
Score = 63.9 bits (32), Expect = 2e-008
Identities = 50/56 (89%)
Strand = Plus / Minus
Query: 1020 gcagaatttggaacaatccttgcacaattggtaccattgcccttgaaaagtccacg 1075
||||||||||| || ||||| ||||||||||||||||| || || |||||||||||
Sbjct: 243 gcagaatttggtactatcctggcacaattggtaccatttcctttaaaaagtccacg 188
Score = 58.0 bits (29), Expect = 9e-007
Identities = 65/77 (84%)
Strand = Plus / Minus
Query: 1140 ggattttgaacctgaagcaatattttcaatcgttcaagtggagcaacagcagtacgagac 1199
||||||||||||||||||| ||||| | ||| || | || || ||||| |||||||||
Sbjct: 123 ggattttgaacctgaagcagaattttaagtcgctctaaaggggctacagctgtacgagac 64
Query: 1200 actccgcctgctacgcc 1216
||||| |||||||||||
Sbjct: 63 actccacctgctacgcc 47
Score = 42.1 bits (21), Expect = 0.056
Identities = 69/85 (81%)
Strand = Plus / Minus
Query: 520 tccaaccaaccatctgcattcttctcctgatgacatcaagcgggtatgcaacagtctggc 579
|||| |||||||| ||||||||||||| || |||||||| || || || ||||| || |
Sbjct: 743 tccacccaaccatttgcattcttctccgtattacatcaagaggataagccacagtttgtc 684
Query: 580 caatggttcccgccacagctccaca 604
||| ||||| || ||||||||||
Sbjct: 683 caacagttcctgctgcagctccaca 659
>gb|DR690264.1|DR690264 EST1080350 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWACT08 3' end, mRNA sequence
Length = 868
Score = 69.9 bits (35), Expect = 2e-010
Identities = 101/123 (82%)
Strand = Plus / Minus
Query: 794 tgcatgaaacataccacggtactggtagggagatttgtctgtctgaacagtgatccttcc 853
|||||| ||||| ||||||||||| || || || || |||||||| ||||| | ||||||
Sbjct: 507 tgcatggaacattccacggtactgataaggtgagttttctgtctgtacagttaaccttcc 448
Query: 854 cctaaccatatccatcgggtaagtagcagacatagctatgataccagcacatgctccagc 913
| |||||| ||||| || || || ||||||||||| || || || ||||||||||| ||
Sbjct: 447 acgaaccatgtccattggatatgttgcagacatagcaattattcctgcacatgctcctgc 388
Query: 914 tcc 916
|||
Sbjct: 387 tcc 385
Score = 63.9 bits (32), Expect = 2e-008
Identities = 50/56 (89%)
Strand = Plus / Minus
Query: 1020 gcagaatttggaacaatccttgcacaattggtaccattgcccttgaaaagtccacg 1075
||||||||||| || ||||| ||||||||||||||||| || || |||||||||||
Sbjct: 281 gcagaatttggtactatcctggcacaattggtaccatttcctttaaaaagtccacg 226
Score = 58.0 bits (29), Expect = 9e-007
Identities = 65/77 (84%)
Strand = Plus / Minus
Query: 1140 ggattttgaacctgaagcaatattttcaatcgttcaagtggagcaacagcagtacgagac 1199
||||||||||||||||||| ||||| | ||| || | || || ||||| |||||||||
Sbjct: 161 ggattttgaacctgaagcagaattttaagtcgctctaaaggggctacagctgtacgagac 102
Query: 1200 actccgcctgctacgcc 1216
||||| |||||||||||
Sbjct: 101 actccacctgctacgcc 85
Score = 42.1 bits (21), Expect = 0.056
Identities = 69/85 (81%)
Strand = Plus / Minus
Query: 520 tccaaccaaccatctgcattcttctcctgatgacatcaagcgggtatgcaacagtctggc 579
|||| |||||||| ||||||||||||| || |||||||| || || || ||||| || |
Sbjct: 781 tccacccaaccatttgcattcttctccgtattacatcaagaggataagccacagtttgtc 722
Query: 580 caatggttcccgccacagctccaca 604
||| ||||| || ||||||||||
Sbjct: 721 caacagttcctgctgcagctccaca 697
>gb|DR021816.1|DR021816 STRS1_47_C12.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_47_C12_A034 3', mRNA sequence
Length = 878
Score = 67.9 bits (34), Expect = 1e-009
Identities = 100/122 (81%)
Strand = Plus / Minus
Query: 794 tgcatgaaacataccacggtactggtagggagatttgtctgtctgaacagtgatccttcc 853
|||||| ||||| ||||||||||| || || || || |||||||| ||||| | ||||||
Sbjct: 122 tgcatggaacattccacggtactgataaggtgagttttctgtctgtacagttaaccttcc 63
Query: 854 cctaaccatatccatcgggtaagtagcagacatagctatgataccagcacatgctccagc 913
| |||||| ||||| || || || ||||||||||| || || || ||||||||||| ||
Sbjct: 62 acgaaccatgtccattggatatgttgcagacatagcaattattcctgcacatgctcctgc 3
Query: 914 tc 915
||
Sbjct: 2 tc 1
Score = 42.1 bits (21), Expect = 0.056
Identities = 69/85 (81%)
Strand = Plus / Minus
Query: 520 tccaaccaaccatctgcattcttctcctgatgacatcaagcgggtatgcaacagtctggc 579
|||| |||||||| ||||||||||||| || |||||||| || || || ||||| || |
Sbjct: 396 tccacccaaccatttgcattcttctccgtattacatcaagaggataagccacagtttgtc 337
Query: 580 caatggttcccgccacagctccaca 604
||| ||||| || ||||||||||
Sbjct: 336 caacagttcctgctgcagctccaca 312
>gb|DN461735.1|DN461735 EST957534 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone RPIID75 5' end, mRNA sequence
Length = 901
Score = 65.9 bits (33), Expect = 4e-009
Identities = 102/125 (81%)
Strand = Plus / Minus
Query: 795 gcatgaaacataccacggtactggtagggagatttgtctgtctgaacagtgatccttccc 854
||||| ||||||||||| || || | ||||| || |||||||| ||||| | ||| |||
Sbjct: 881 gcatggaacataccacgatattgattaggagagttctctgtctggacagtcagcctcccc 822
Query: 855 ctaaccatatccatcgggtaagtagcagacatagctatgataccagcacatgctccagct 914
| |||||||||||| |||||||| |||||||| || || || ||||| || ||||| |||
Sbjct: 821 cgaaccatatccattgggtaagttgcagacatggcaattattccagcgcaagctcctgct 762
Query: 915 ccaag 919
||||
Sbjct: 761 gcaag 757
>gb|DT626901.1|DT626901 EST1159977 Sequencing ESTs from loblolly pine embryos Pinus taeda
cDNA clone PIMAS65 5' end, mRNA sequence
Length = 1001
Score = 65.9 bits (33), Expect = 4e-009
Identities = 102/125 (81%)
Strand = Plus / Minus
Query: 795 gcatgaaacataccacggtactggtagggagatttgtctgtctgaacagtgatccttccc 854
||||| ||||||||||| || || | ||||| || |||||||| ||||| | ||| |||
Sbjct: 881 gcatggaacataccacgatattgattaggagagttctctgtctggacagtcagcctcccc 822
Query: 855 ctaaccatatccatcgggtaagtagcagacatagctatgataccagcacatgctccagct 914
| |||||||||||| |||||||| |||||||| || || || ||||| || ||||| |||
Sbjct: 821 cgaaccatatccattgggtaagttgcagacatggcaattattccagcgcaagctcctgct 762
Query: 915 ccaag 919
||||
Sbjct: 761 gcaag 757
>gb|CF401483.1|CF401483 RTWW1_12_A09.g1_A015 Well-watered loblolly pine roots WW1 Pinus taeda
cDNA clone RTWW1_12_A09_A015 5', mRNA sequence
Length = 718
Score = 63.9 bits (32), Expect = 2e-008
Identities = 50/56 (89%)
Strand = Plus / Minus
Query: 1020 gcagaatttggaacaatccttgcacaattggtaccattgcccttgaaaagtccacg 1075
||||||||||| || ||||| ||||||||||||||||| || || |||||||||||
Sbjct: 621 gcagaatttggtactatcctggcacaattggtaccatttcctttaaaaagtccacg 566
Score = 58.0 bits (29), Expect = 9e-007
Identities = 65/77 (84%)
Strand = Plus / Minus
Query: 1140 ggattttgaacctgaagcaatattttcaatcgttcaagtggagcaacagcagtacgagac 1199
||||||||||||||||||| ||||| | ||| || | || || ||||| |||||||||
Sbjct: 501 ggattttgaacctgaagcagaattttaagtcgctctaaaggggctacagctgtacgagac 442
Query: 1200 actccgcctgctacgcc 1216
||||| |||||||||||
Sbjct: 441 actccacctgctacgcc 425
>gb|CF402604.1|CF402604 RTWW1_21_A06.g1_A015 Well-watered loblolly pine roots WW1 Pinus taeda
cDNA clone RTWW1_21_A06_A015 5', mRNA sequence
Length = 722
Score = 63.9 bits (32), Expect = 2e-008
Identities = 50/56 (89%)
Strand = Plus / Minus
Query: 1020 gcagaatttggaacaatccttgcacaattggtaccattgcccttgaaaagtccacg 1075
||||||||||| || ||||| ||||||||||||||||| || || |||||||||||
Sbjct: 620 gcagaatttggtactatcctggcacaattggtaccatttcctttaaaaagtccacg 565
Score = 58.0 bits (29), Expect = 9e-007
Identities = 65/77 (84%)
Strand = Plus / Minus
Query: 1140 ggattttgaacctgaagcaatattttcaatcgttcaagtggagcaacagcagtacgagac 1199
||||||||||||||||||| ||||| | ||| || | || || ||||| |||||||||
Sbjct: 500 ggattttgaacctgaagcagaattttaagtcgctctaaaggggctacagctgtacgagac 441
Query: 1200 actccgcctgctacgcc 1216
||||| |||||||||||
Sbjct: 440 actccacctgctacgcc 424
>gb|DR018964.1|DR018964 STRS1_27_B02.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_27_B02_A034 3', mRNA sequence
Length = 865
Score = 63.9 bits (32), Expect = 2e-008
Identities = 50/56 (89%)
Strand = Plus / Plus
Query: 1020 gcagaatttggaacaatccttgcacaattggtaccattgcccttgaaaagtccacg 1075
||||||||||| || ||||| ||||||||||||||||| || || |||||||||||
Sbjct: 361 gcagaatttggtactatcctggcacaattggtaccatttcctttaaaaagtccacg 416
Score = 61.9 bits (31), Expect = 6e-008
Identities = 100/123 (81%)
Strand = Plus / Plus
Query: 794 tgcatgaaacataccacggtactggtagggagatttgtctgtctgaacagtgatccttcc 853
|||||| ||||| ||||||| ||| || || || || |||||||| ||||| | ||||||
Sbjct: 135 tgcatggaacattccacggtgctgataaggtgagttttctgtctgtacagttaaccttcc 194
Query: 854 cctaaccatatccatcgggtaagtagcagacatagctatgataccagcacatgctccagc 913
| |||||| ||||| || || || ||||||||||| || || || ||||||||||| ||
Sbjct: 195 acgaaccatgtccattggatatgttgcagacatagcaattattcctgcacatgctcctgc 254
Query: 914 tcc 916
|||
Sbjct: 255 tcc 257
Score = 58.0 bits (29), Expect = 9e-007
Identities = 65/77 (84%)
Strand = Plus / Plus
Query: 1140 ggattttgaacctgaagcaatattttcaatcgttcaagtggagcaacagcagtacgagac 1199
||||||||||||||||||| ||||| | ||| || | || || ||||| |||||||||
Sbjct: 481 ggattttgaacctgaagcagaattttaagtcgctctaaaggggctacagctgtacgagac 540
Query: 1200 actccgcctgctacgcc 1216
||||| |||||||||||
Sbjct: 541 actccacctgctacgcc 557
>gb|DR056676.1|DR056676 RTCA1_31_G06.g1_A029 Roots minus calcium Pinus taeda cDNA clone
RTCA1_31_G06_A029 5', mRNA sequence
Length = 600
Score = 63.9 bits (32), Expect = 2e-008
Identities = 50/56 (89%)
Strand = Plus / Minus
Query: 1020 gcagaatttggaacaatccttgcacaattggtaccattgcccttgaaaagtccacg 1075
||||||||||| || ||||| ||||||||||||||||| || || |||||||||||
Sbjct: 398 gcagaatttggtactatcctggcacaattggtaccatttcctttaaaaagtccacg 343
Score = 58.0 bits (29), Expect = 9e-007
Identities = 65/77 (84%)
Strand = Plus / Minus
Query: 1140 ggattttgaacctgaagcaatattttcaatcgttcaagtggagcaacagcagtacgagac 1199
||||||||||||||||||| ||||| | ||| || | || || ||||| |||||||||
Sbjct: 278 ggattttgaacctgaagcagaattttaagtcgctctaaaggggctacagctgtacgagac 219
Query: 1200 actccgcctgctacgcc 1216
||||| |||||||||||
Sbjct: 218 actccacctgctacgcc 202
Score = 52.0 bits (26), Expect = 6e-005
Identities = 71/86 (82%)
Strand = Plus / Minus
Query: 831 tctgtctgaacagtgatccttcccctaaccatatccatcgggtaagtagcagacatagct 890
|||||||| ||||| | |||||| | |||||| ||||| || || || |||||||||||
Sbjct: 587 tctgtctgtacagttaaccttccacgaaccatgtccattggatatgttgcagacatagca 528
Query: 891 atgataccagcacatgctccagctcc 916
|| || || ||||||||||| |||||
Sbjct: 527 attattcctgcacatgctcctgctcc 502
>gb|DN626592.1|DN626592 EST977408 Subtracted pine embryo library, Lib_C Pinus taeda cDNA
clone PTAA502, mRNA sequence
Length = 334
Score = 58.0 bits (29), Expect = 9e-007
Identities = 65/77 (84%)
Strand = Plus / Plus
Query: 1140 ggattttgaacctgaagcaatattttcaatcgttcaagtggagcaacagcagtacgagac 1199
||||||||||||||||||| ||||| | ||| || | || || ||||| |||||||||
Sbjct: 23 ggattttgaacctgaagcagaattttaagtcgctctaaaggggctacagctgtacgagac 82
Query: 1200 actccgcctgctacgcc 1216
||||| |||||||||||
Sbjct: 83 actccacctgctacgcc 99
>gb|BG040296.1|BG040296 NXSI_110_G03_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_110_G03 5', mRNA sequence
Length = 439
Score = 50.1 bits (25), Expect = 2e-004
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 1258 cccctcgtgccgaattcctgcagcc 1282
|||||||||||||||||||||||||
Sbjct: 76 cccctcgtgccgaattcctgcagcc 52
>gb|BG040301.1|BG040301 NXSI_110_G06_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_110_G06 5' similar to Arabidopsis thaliana
sequence At4g19400 unknown protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA sequence
Length = 581
Score = 50.1 bits (25), Expect = 2e-004
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 1258 cccctcgtgccgaattcctgcagcc 1282
|||||||||||||||||||||||||
Sbjct: 75 cccctcgtgccgaattcctgcagcc 51
>gb|BE761823.1|BE761823 NXCI_070_C01_F NXCI (Nsf Xylem Compression wood Inclined) Pinus taeda
cDNA clone NXCI_070_C01 5' similar to Arabidopsis
thaliana sequence At3g44220 putative protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA sequence
Length = 508
Score = 48.1 bits (24), Expect = 0.001
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 1259 ccctcgtgccgaattcctgcagcc 1282
||||||||||||||||||||||||
Sbjct: 77 ccctcgtgccgaattcctgcagcc 54
>gb|BE761838.1|BE761838 NXCI_070_D09_F NXCI (Nsf Xylem Compression wood Inclined) Pinus taeda
cDNA clone NXCI_070_D09 5', mRNA sequence
Length = 434
Score = 48.1 bits (24), Expect = 0.001
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 1259 ccctcgtgccgaattcctgcagcc 1282
||||||||||||||||||||||||
Sbjct: 77 ccctcgtgccgaattcctgcagcc 54
>gb|BE761844.1|BE761844 NXCI_070_E03_F NXCI (Nsf Xylem Compression wood Inclined) Pinus taeda
cDNA clone NXCI_070_E03 5' similar to Arabidopsis
thaliana sequence At2g01570 putative RGA1, giberellin
repsonse modulation protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA sequence
Length = 534
Score = 48.1 bits (24), Expect = 0.001
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 1259 ccctcgtgccgaattcctgcagcc 1282
||||||||||||||||||||||||
Sbjct: 77 ccctcgtgccgaattcctgcagcc 54
>gb|BE761863.1|BE761863 NXCI_070_G01_F NXCI (Nsf Xylem Compression wood Inclined) Pinus taeda
cDNA clone NXCI_070_G01 5', mRNA sequence
Length = 451
Score = 48.1 bits (24), Expect = 0.001
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 1259 ccctcgtgccgaattcctgcagcc 1282
||||||||||||||||||||||||
Sbjct: 73 ccctcgtgccgaattcctgcagcc 50
>gb|BE761876.1|BE761876 NXCI_070_H09_F NXCI (Nsf Xylem Compression wood Inclined) Pinus taeda
cDNA clone NXCI_070_H09 5' similar to Arabidopsis
thaliana sequence At5g50460 protein translocation complex
Sec61 gamma chain (pir||T05513) see
http://mips.gsf.de/proj/thal/db/index.html, mRNA sequence
Length = 527
Score = 48.1 bits (24), Expect = 0.001
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 1259 ccctcgtgccgaattcctgcagcc 1282
||||||||||||||||||||||||
Sbjct: 73 ccctcgtgccgaattcctgcagcc 50
>gb|BG040246.1|BG040246 NXSI_110_C05_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_110_C05 5' similar to Arabidopsis thaliana
sequence At1g19170 putative protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA sequence
Length = 619
Score = 48.1 bits (24), Expect = 0.001
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 1259 ccctcgtgccgaattcctgcagcc 1282
||||||||||||||||||||||||
Sbjct: 72 ccctcgtgccgaattcctgcagcc 49
>gb|BG040247.1|BG040247 NXSI_110_B12_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_110_B12 5' similar to Arabidopsis thaliana
sequence At3g43740 leucine-rich repeat protein LRP -like
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 426
Score = 48.1 bits (24), Expect = 0.001
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 1259 ccctcgtgccgaattcctgcagcc 1282
||||||||||||||||||||||||
Sbjct: 62 ccctcgtgccgaattcctgcagcc 39
>gb|BG040257.1|BG040257 NXSI_110_C10_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_110_C10 5' similar to Arabidopsis thaliana
sequence At2g21660 glycine-rich RNA binding protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA sequence
Length = 528
Score = 48.1 bits (24), Expect = 0.001
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 1255 ggccccctcgtgccgaattcctgcagcc 1282
|||| |||||||||||||||||||||||
Sbjct: 77 ggccgcctcgtgccgaattcctgcagcc 50
>gb|BG040265.1|BG040265 NXSI_110_D05_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_110_D05 5' similar to Arabidopsis thaliana
sequence At4g13930 hydroxymethyltransferase see
http://mips.gsf.de/proj/thal/db/index.html, mRNA sequence
Length = 621
Score = 48.1 bits (24), Expect = 0.001
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 1259 ccctcgtgccgaattcctgcagcc 1282
||||||||||||||||||||||||
Sbjct: 75 ccctcgtgccgaattcctgcagcc 52
>gb|BG040269.1|BG040269 NXSI_110_D08_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_110_D08 5' similar to Arabidopsis thaliana
sequence At3g04090 hypothetical protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA sequence
Length = 618
Score = 48.1 bits (24), Expect = 0.001
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 1259 ccctcgtgccgaattcctgcagcc 1282
||||||||||||||||||||||||
Sbjct: 75 ccctcgtgccgaattcctgcagcc 52
>gb|BG040299.1|BG040299 NXSI_110_H02_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_110_H02 5', mRNA sequence
Length = 227
Score = 48.1 bits (24), Expect = 0.001
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 1259 ccctcgtgccgaattcctgcagcc 1282
||||||||||||||||||||||||
Sbjct: 75 ccctcgtgccgaattcctgcagcc 52
>gb|BQ696828.1|BQ696828 NXPV_045_H02_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_045_H02 5' similar to Arabidopsis
thaliana sequence At3g47570 receptor kinase-like protein
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 204
Score = 48.1 bits (24), Expect = 0.001
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 1259 ccctcgtgccgaattcctgcagcc 1282
||||||||||||||||||||||||
Sbjct: 61 ccctcgtgccgaattcctgcagcc 38
>gb|BQ696830.1|BQ696830 NXPV_045_G12_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_045_G12 5' similar to Arabidopsis
thaliana sequence At2g44530 putative phosphoribosyl
pyrophosphate synthetase see
http://mips.gsf.de/proj/thal/db/index.html, mRNA sequence
Length = 224
Score = 48.1 bits (24), Expect = 0.001
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 1259 ccctcgtgccgaattcctgcagcc 1282
||||||||||||||||||||||||
Sbjct: 61 ccctcgtgccgaattcctgcagcc 38
>gb|CD022336.1|CD022336 NXPV_045_H04_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_045_H04 5', mRNA sequence
Length = 198
Score = 48.1 bits (24), Expect = 0.001
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 1259 ccctcgtgccgaattcctgcagcc 1282
||||||||||||||||||||||||
Sbjct: 65 ccctcgtgccgaattcctgcagcc 42
>gb|BE761807.1|BE761807 NXCI_070_A07_F NXCI (Nsf Xylem Compression wood Inclined) Pinus taeda
cDNA clone NXCI_070_A07 5' similar to Arabidopsis
thaliana sequence At1g50010 tubulin alpha-2/alpha-4
chain, putative see
http://mips.gsf.de/proj/thal/db/index.html, mRNA sequence
Length = 447
Score = 46.1 bits (23), Expect = 0.004
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 1260 cctcgtgccgaattcctgcagcc 1282
|||||||||||||||||||||||
Sbjct: 75 cctcgtgccgaattcctgcagcc 53
>gb|BE761809.1|BE761809 NXCI_070_A09_F NXCI (Nsf Xylem Compression wood Inclined) Pinus taeda
cDNA clone NXCI_070_A09 5' similar to Arabidopsis
thaliana sequence At4g17510 carboxyl-terminal proteinase
like protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA sequence
Length = 432
Score = 46.1 bits (23), Expect = 0.004
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 1260 cctcgtgccgaattcctgcagcc 1282
|||||||||||||||||||||||
Sbjct: 76 cctcgtgccgaattcctgcagcc 54
>gb|BE761813.1|BE761813 NXCI_070_B02_F NXCI (Nsf Xylem Compression wood Inclined) Pinus taeda
cDNA clone NXCI_070_B02 5', mRNA sequence
Length = 479
Score = 46.1 bits (23), Expect = 0.004
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 1260 cctcgtgccgaattcctgcagcc 1282
|||||||||||||||||||||||
Sbjct: 71 cctcgtgccgaattcctgcagcc 49
>gb|BE761815.1|BE761815 NXCI_070_B04_F NXCI (Nsf Xylem Compression wood Inclined) Pinus taeda
cDNA clone NXCI_070_B04 5' similar to Arabidopsis
thaliana sequence At1g79530 glyceraldehyde-3-phosphate
dehydrogenase (EC 1.2.1.12) precursor like protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA sequence
Length = 480
Score = 46.1 bits (23), Expect = 0.004
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 1260 cctcgtgccgaattcctgcagcc 1282
|||||||||||||||||||||||
Sbjct: 79 cctcgtgccgaattcctgcagcc 57
>gb|BE761817.1|BE761817 NXCI_070_B06_F NXCI (Nsf Xylem Compression wood Inclined) Pinus taeda
cDNA clone NXCI_070_B06 5' similar to Arabidopsis
thaliana sequence At1g07890 L-ascorbate peroxidase see
http://mips.gsf.de/proj/thal/db/index.html, mRNA sequence
Length = 415
Score = 46.1 bits (23), Expect = 0.004
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 1260 cctcgtgccgaattcctgcagcc 1282
|||||||||||||||||||||||
Sbjct: 76 cctcgtgccgaattcctgcagcc 54
>gb|BE761818.1|BE761818 NXCI_070_B07_F NXCI (Nsf Xylem Compression wood Inclined) Pinus taeda
cDNA clone NXCI_070_B07 5' similar to Arabidopsis
thaliana sequence At1g05810 RAS-related protein ARA-1 see
http://mips.gsf.de/proj/thal/db/index.html, mRNA sequence
Length = 453
Score = 46.1 bits (23), Expect = 0.004
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 1260 cctcgtgccgaattcctgcagcc 1282
|||||||||||||||||||||||
Sbjct: 76 cctcgtgccgaattcctgcagcc 54
>gb|BE761819.1|BE761819 NXCI_070_B08_F NXCI (Nsf Xylem Compression wood Inclined) Pinus taeda
cDNA clone NXCI_070_B08 5', mRNA sequence
Length = 486
Score = 46.1 bits (23), Expect = 0.004
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 1260 cctcgtgccgaattcctgcagcc 1282
|||||||||||||||||||||||
Sbjct: 79 cctcgtgccgaattcctgcagcc 57
>gb|BE761832.1|BE761832 NXCI_070_D03_F NXCI (Nsf Xylem Compression wood Inclined) Pinus taeda
cDNA clone NXCI_070_D03 5', mRNA sequence
Length = 481
Score = 46.1 bits (23), Expect = 0.004
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 1260 cctcgtgccgaattcctgcagcc 1282
|||||||||||||||||||||||
Sbjct: 76 cctcgtgccgaattcctgcagcc 54
>gb|BE761834.1|BE761834 NXCI_070_D05_F NXCI (Nsf Xylem Compression wood Inclined) Pinus taeda
cDNA clone NXCI_070_D05 5' similar to Arabidopsis
thaliana sequence At5g58420 ribosomal protein S4 - like
see http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 421
Score = 46.1 bits (23), Expect = 0.004
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 1260 cctcgtgccgaattcctgcagcc 1282
|||||||||||||||||||||||
Sbjct: 76 cctcgtgccgaattcctgcagcc 54
>gb|BE761842.1|BE761842 NXCI_070_E01_F NXCI (Nsf Xylem Compression wood Inclined) Pinus taeda
cDNA clone NXCI_070_E01 5', mRNA sequence
Length = 274
Score = 46.1 bits (23), Expect = 0.004
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 1260 cctcgtgccgaattcctgcagcc 1282
|||||||||||||||||||||||
Sbjct: 80 cctcgtgccgaattcctgcagcc 58
>gb|BE761850.1|BE761850 NXCI_070_E12_F NXCI (Nsf Xylem Compression wood Inclined) Pinus taeda
cDNA clone NXCI_070_E12 5', mRNA sequence
Length = 404
Score = 46.1 bits (23), Expect = 0.004
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 1260 cctcgtgccgaattcctgcagcc 1282
|||||||||||||||||||||||
Sbjct: 72 cctcgtgccgaattcctgcagcc 50
>gb|BE761853.1|BE761853 NXCI_070_F03_F NXCI (Nsf Xylem Compression wood Inclined) Pinus taeda
cDNA clone NXCI_070_F03 5', mRNA sequence
Length = 460
Score = 46.1 bits (23), Expect = 0.004
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 1260 cctcgtgccgaattcctgcagcc 1282
|||||||||||||||||||||||
Sbjct: 80 cctcgtgccgaattcctgcagcc 58
>gb|BE761856.1|BE761856 NXCI_070_F06_F NXCI (Nsf Xylem Compression wood Inclined) Pinus taeda
cDNA clone NXCI_070_F06 5' similar to Arabidopsis
thaliana sequence At2g30490 cinnamate-4-hydroxylase see
http://mips.gsf.de/proj/thal/db/index.html, mRNA sequence
Length = 438
Score = 46.1 bits (23), Expect = 0.004
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 1260 cctcgtgccgaattcctgcagcc 1282
|||||||||||||||||||||||
Sbjct: 72 cctcgtgccgaattcctgcagcc 50
>gb|BE761861.1|BE761861 NXCI_070_F11_F NXCI (Nsf Xylem Compression wood Inclined) Pinus taeda
cDNA clone NXCI_070_F11 5', mRNA sequence
Length = 358
Score = 46.1 bits (23), Expect = 0.004
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 1260 cctcgtgccgaattcctgcagcc 1282
|||||||||||||||||||||||
Sbjct: 72 cctcgtgccgaattcctgcagcc 50
>gb|BE761866.1|BE761866 NXCI_070_G06_F NXCI (Nsf Xylem Compression wood Inclined) Pinus taeda
cDNA clone NXCI_070_G06 5' similar to Arabidopsis
thaliana sequence At3g16640 translationally controlled
tumor protein-like protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA sequence
Length = 339
Score = 46.1 bits (23), Expect = 0.004
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 1260 cctcgtgccgaattcctgcagcc 1282
|||||||||||||||||||||||
Sbjct: 79 cctcgtgccgaattcctgcagcc 57
>gb|BE761868.1|BE761868 NXCI_070_G09_F NXCI (Nsf Xylem Compression wood Inclined) Pinus taeda
cDNA clone NXCI_070_G09 5' similar to Arabidopsis
thaliana sequence At1g13910 disease resistance like
protein see http://mips.gsf.de/proj/thal/db/index.html,
mRNA sequence
Length = 439
Score = 46.1 bits (23), Expect = 0.004
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 1260 cctcgtgccgaattcctgcagcc 1282
|||||||||||||||||||||||
Sbjct: 72 cctcgtgccgaattcctgcagcc 50
>gb|BE761870.1|BE761870 NXCI_070_G12_F NXCI (Nsf Xylem Compression wood Inclined) Pinus taeda
cDNA clone NXCI_070_G12 5', mRNA sequence
Length = 257
Score = 46.1 bits (23), Expect = 0.004
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 1260 cctcgtgccgaattcctgcagcc 1282
|||||||||||||||||||||||
Sbjct: 63 cctcgtgccgaattcctgcagcc 41
>gb|BG040229.1|BG040229 NXSI_110_A07_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_110_A07 5' similar to Arabidopsis thaliana
sequence At1g48410 Argonaute protein AGO1 see
http://mips.gsf.de/proj/thal/db/index.html, mRNA sequence
Length = 578
Score = 46.1 bits (23), Expect = 0.004
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 1260 cctcgtgccgaattcctgcagcc 1282
|||||||||||||||||||||||
Sbjct: 72 cctcgtgccgaattcctgcagcc 50
>gb|BG040230.1|BG040230 NXSI_110_A01_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_110_A01 5' similar to Arabidopsis thaliana
sequence At3g56800 calmodulin-3 see
http://mips.gsf.de/proj/thal/db/index.html, mRNA sequence
Length = 538
Score = 46.1 bits (23), Expect = 0.004
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 1260 cctcgtgccgaattcctgcagcc 1282
|||||||||||||||||||||||
Sbjct: 72 cctcgtgccgaattcctgcagcc 50
>gb|BG040234.1|BG040234 NXSI_110_A09_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_110_A09 5' similar to Arabidopsis thaliana
sequence At1g11360 unknown protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA sequence
Length = 477
Score = 46.1 bits (23), Expect = 0.004
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 1260 cctcgtgccgaattcctgcagcc 1282
|||||||||||||||||||||||
Sbjct: 73 cctcgtgccgaattcctgcagcc 51
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 153,705
Number of Sequences: 355925
Number of extensions: 153705
Number of successful extensions: 44803
Number of sequences better than 0.5: 190
Number of HSP's better than 0.5 without gapping: 190
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 44553
Number of HSP's gapped (non-prelim): 241
length of query: 1282
length of database: 217,277,237
effective HSP length: 19
effective length of query: 1263
effective length of database: 210,514,662
effective search space: 265880018106
effective search space used: 265880018106
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)