BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 131537.2.334
(1733 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|DR110346.1|DR110346 RTS1_10_H03.b1_A029 Roots minus sulf... 192 3e-047
gb|DR167453.1|DR167453 RTPHOS1_18_H05.g1_A029 Roots minus p... 192 3e-047
gb|CF393816.1|CF393816 RTDS2_1_A10.g1_A021 Drought-stressed... 176 2e-042
gb|CF668506.1|CF668506 RTCNT1_36_H10.g1_A029 Root control P... 176 2e-042
gb|CF670333.1|CF670333 RTCNT1_49_C06.g1_A029 Root control P... 176 2e-042
gb|DR022118.1|DR022118 STRS1_49_A10.b1_A034 Shoot tip pitch... 176 2e-042
gb|CF396421.1|CF396421 RTDS2_21_H12.g1_A021 Drought-stresse... 168 5e-040
gb|AL750674.1|AL750674 AL750674 RN Pinus pinaster cDNA clon... 167 2e-039
gb|CF475292.1|CF475292 RTWW2_13_H04.b1_A021 Well-watered lo... 167 2e-039
gb|CO366415.1|CO366415 RTK1_27_E11.g1_A029 Roots minus pota... 167 2e-039
gb|CV036192.1|CV036192 RTNACL1_57_H03.b1_A029 Roots plus ad... 167 2e-039
gb|DR012575.1|DR012575 HEAT1_13_E12.g1_A029 Root at 37 C fo... 167 2e-039
gb|DR052273.1|DR052273 RTCA1_3_C03.g1_A029 Roots minus calc... 167 2e-039
gb|DR744725.1|DR744725 RTCU1_24_B03.g1_A029 Roots plus adde... 167 2e-039
gb|AF283816.1|AF283816 Pinus taeda calreticulin mRNA, compl... 167 2e-039
gb|DR019100.1|DR019100 STRS1_27_G03.g1_A034 Shoot tip pitch... 165 8e-039
gb|AW289804.1|AW289804 NXNV006D09F Nsf Xylem Normal wood Ve... 161 1e-037
gb|CD028390.1|CD028390 NXNV006D09 Nsf Xylem Normal wood Ver... 161 1e-037
gb|CO364984.1|CO364984 RTK1_23_A06.b1_A029 Roots minus pota... 159 5e-037
gb|BF220810.1|BF220810 NXCI_154_B05_F NXCI (Nsf Xylem Compr... 153 3e-035
gb|BE662548.1|BE662548 ST87/ST87F06 Pine TriplEx shoot tip ... 145 7e-033
gb|CR393186.1|CR393186 CR393186 RN Pinus pinaster cDNA clon... 143 3e-032
gb|AI812952.1|AI812952 22G9 Pine Lambda Zap Xylem library P... 141 1e-031
gb|CO364857.1|CO364857 RTK1_22_E10.b1_A029 Roots minus pota... 127 2e-027
gb|CV036257.1|CV036257 RTNACL1_57_H03.g1_A029 Roots plus ad... 127 2e-027
gb|AW043340.1|AW043340 ST32B12 Pine TriplEx shoot tip libra... 123 3e-026
gb|CF668421.1|CF668421 RTCNT1_36_H10.b1_A029 Root control P... 123 3e-026
gb|CF670258.1|CF670258 RTCNT1_49_C06.b1_A029 Root control P... 123 3e-026
gb|BG039134.1|BG039134 NXSI_095_C06_F NXSI (Nsf Xylem Side ... 119 4e-025
gb|BM158719.1|BM158719 NXLV_039_C05_F NXLV (Nsf Xylem Late ... 119 4e-025
gb|CF390177.1|CF390177 RTDR2_12_D12.g1_A021 Loblolly pine r... 119 4e-025
gb|CF395464.1|CF395464 RTDS2_11_H06.g1_A021 Drought-stresse... 119 4e-025
gb|CO366328.1|CO366328 RTK1_27_E11.b1_A029 Roots minus pota... 119 4e-025
gb|DR012497.1|DR012497 HEAT1_13_E12.b1_A029 Root at 37 C fo... 119 4e-025
gb|DR682232.1|DR682232 EST1072307 Normalized pine embryo li... 119 4e-025
gb|DT630835.1|DT630835 EST1145766 Normalized pine embryo li... 119 4e-025
gb|AW043146.1|AW043146 ST29H08 Pine TriplEx shoot tip libra... 117 2e-024
gb|CX647947.1|CX647947 COLD1_25_C01.g1_A029 Root cold Pinus... 117 2e-024
gb|CO175084.1|CO175084 NDL1_48_F11.b1_A029 Needles control ... 115 6e-024
gb|CX647874.1|CX647874 COLD1_25_C01.b1_A029 Root cold Pinus... 115 6e-024
gb|DR091630.1|DR091630 RTAL1_22_H09.g1_A029 Roots plus adde... 115 6e-024
gb|BE662302.1|BE662302 ST84/ST84D02 Pine TriplEx shoot tip ... 107 2e-021
gb|BX254774.1|BX254774 BX254774 Pinus pinaster differenciat... 107 2e-021
gb|CO175151.1|CO175151 NDL1_48_F11.g1_A029 Needles control ... 107 2e-021
gb|CF473090.1|CF473090 RTDS1_1_D04.g1_A015 Drought-stressed... 103 2e-020
gb|CO200932.1|CO200932 RTCNT2_2_B11.g1_A029 Root control 2 ... 103 2e-020
gb|CV034720.1|CV034720 RTNACL1_11_D05.b1_A029 Roots plus ad... 103 2e-020
gb|DR092172.1|DR092172 RTAL1_27_C09.b1_A029 Roots plus adde... 103 2e-020
gb|DR165313.1|DR165313 RTPHOS1_4_D06.b1_A029 Roots minus ph... 103 2e-020
gb|AW042658.1|AW042658 ST23A07 Pine TriplEx shoot tip libra... 101 9e-020
gb|BM158718.1|BM158718 NXLV_039_C04_F NXLV (Nsf Xylem Late ... 100 4e-019
gb|AA556373.1|AA556373 228 Loblolly pine C Pinus taeda cDNA... 96 6e-018
gb|CV034792.1|CV034792 RTNACL1_11_D05.g1_A029 Roots plus ad... 96 6e-018
gb|DR012617.1|DR012617 HEAT1_14_A11.b1_A029 Root at 37 C fo... 96 6e-018
gb|DR012699.1|DR012699 HEAT1_14_A11.g1_A029 Root at 37 C fo... 96 6e-018
gb|DR744660.1|DR744660 RTCU1_24_B03.b1_A029 Roots plus adde... 96 6e-018
gb|AW754529.1|AW754529 PC03C03 Pine TriplEx pollen cone lib... 94 2e-017
gb|BF778071.1|BF778071 NXSI_081_F02_F NXSI (Nsf Xylem Side ... 94 2e-017
gb|AW043255.1|AW043255 ST31B10 Pine TriplEx shoot tip libra... 92 9e-017
gb|AW290111.1|AW290111 NXNV010D03F Nsf Xylem Normal wood Ve... 90 4e-016
gb|BE662331.1|BE662331 ST84/ST84F09 Pine TriplEx shoot tip ... 90 4e-016
gb|AJ541803.1|AJ541803 AJ541803 Pinus pinaster differentiat... 90 4e-016
gb|CD026738.1|CD026738 NXNV010D03 Nsf Xylem Normal wood Ver... 90 4e-016
gb|CO200857.1|CO200857 RTCNT2_2_B11.b1_A029 Root control 2 ... 88 1e-015
gb|AW042889.1|AW042889 ST26F06 Pine TriplEx shoot tip libra... 86 6e-015
gb|DR091549.1|DR091549 RTAL1_22_H09.b1_A029 Roots plus adde... 84 2e-014
gb|AW587778.1|AW587778 ST66G08 Pine TriplEx shoot tip libra... 78 1e-012
gb|AW587738.1|AW587738 ST66B09 Pine TriplEx shoot tip libra... 76 5e-012
gb|BG040859.1|BG040859 NXSI_116_A03_F NXSI (Nsf Xylem Side ... 76 5e-012
gb|AW010688.1|AW010688 ST11A05 Pine TriplEx shoot tip libra... 74 2e-011
gb|AW010325.1|AW010325 ST04G01 Pine TriplEx shoot tip libra... 72 8e-011
gb|CD019977.1|CD019977 NXNV007H12 Nsf Xylem Normal wood Ver... 72 8e-011
gb|BG318667.1|BG318667 NXPV_017_E12_F NXPV (Nsf Xylem Plani... 66 5e-009
gb|BQ700939.1|BQ700939 NXRV113_D09_F NXRV (Nsf Xylem Root w... 66 5e-009
gb|BF518150.1|BF518150 NXSI_035_F06_F NXSI (Nsf Xylem Side ... 64 2e-008
gb|CD016213.1|CD016213 NXCI_023_D07_F NXCI (Nsf Xylem Compr... 64 2e-008
gb|CF390065.1|CF390065 RTDR2_12_D12.b1_A021 Loblolly pine r... 64 2e-008
gb|CF395387.1|CF395387 RTDS2_11_H06.b1_A021 Drought-stresse... 64 2e-008
gb|AW010529.1|AW010529 ST07H02 Pine TriplEx shoot tip libra... 62 8e-008
gb|CD018648.1|CD018648 NXLV_040_E08_F NXLV (Nsf Xylem Late ... 62 8e-008
gb|CD026241.1|CD026241 NXSI_124_G01_F NXSI (Nsf Xylem Side ... 60 3e-007
gb|CF396280.1|CF396280 RTDS2_21_H12.b1_A021 Drought-stresse... 60 3e-007
gb|DR011478.1|DR011478 HEAT1_6_A10.b1_A029 Root at 37 C for... 60 3e-007
gb|AW011371.1|AW011371 ST20A03 Pine TriplEx shoot tip libra... 56 5e-006
gb|AW056655.1|AW056655 ST54C03 Pine TriplEx shoot tip libra... 56 5e-006
gb|AW437935.1|AW437935 ST78E07 Pine TriplEx shoot tip libra... 56 5e-006
gb|CV033612.1|CV033612 RTNACL1_35_C08.g1_A029 Roots plus ad... 52 8e-005
gb|DR010814.1|DR010814 HEAT1_1_B02.g1_A029 Root at 37 C for... 50 3e-004
gb|BG276028.1|BG276028 NXSI_147_H06_F NXSI (Nsf Xylem Side ... 48 0.001
gb|AA557023.1|AA557023 865 Loblolly pine N Pinus taeda cDNA... 46 0.005
gb|AI812718.1|AI812718 18C5 Pine Lambda Zap Xylem library P... 46 0.005
gb|BE187485.1|BE187485 NXNV_98_G11_F Nsf Xylem Normal wood ... 46 0.005
gb|CF479522.1|CF479522 RTWW3_22_E11.g1_A022 Well-watered lo... 46 0.005
gb|CO167127.1|CO167127 FLD1_67_B05.b1_A029 Root flooded Pin... 46 0.005
gb|CO200455.1|CO200455 GEO2_7_C05.g1_A032 Root gravitropism... 46 0.005
gb|CO360947.1|CO360947 NDL2_1_D02.g1_A029 Needles control 2... 46 0.005
gb|CO370478.1|CO370478 RTK1_68_D10.b1_A029 Roots minus pota... 46 0.005
gb|CX652896.1|CX652896 COLD1_62_E01.b1_A029 Root cold Pinus... 46 0.005
gb|DR384406.1|DR384406 RTHG1_2_B10.b1_A029 Roots plus added... 46 0.005
gb|DR684184.1|DR684184 EST1074261 Normalized pine embryo li... 46 0.005
gb|DR691798.1|DR691798 EST1081885 Normalized pine embryo li... 46 0.005
gb|AW226271.1|AW226271 ST80D09 Pine TriplEx shoot tip libra... 44 0.019
gb|CD016626.1|CD016626 NXCI_040_C03_F NXCI (Nsf Xylem Compr... 44 0.019
gb|CD026061.1|CD026061 NXSI_095_C02_F NXSI (Nsf Xylem Side ... 44 0.019
gb|DR021364.1|DR021364 STRS1_44_D10.b1_A034 Shoot tip pitch... 44 0.019
gb|DR021438.1|DR021438 STRS1_44_D10.g1_A034 Shoot tip pitch... 44 0.019
gb|DR058951.1|DR058951 RTNIT1_14_G10.g1_A029 Roots minus ni... 44 0.019
gb|DR091933.1|DR091933 RTAL1_25_A06.b1_A029 Roots plus adde... 44 0.019
gb|DR097639.1|DR097639 STRR1_36_C01.b1_A033 Stem Response R... 44 0.019
gb|CD022062.1|CD022062 NXNV006E10 Nsf Xylem Normal wood Ver... 42 0.075
gb|BF609920.1|BF609920 NXSI_052_E11_F NXSI (Nsf Xylem Side ... 40 0.30
>gb|DR110346.1|DR110346 RTS1_10_H03.b1_A029 Roots minus sulfur Pinus taeda cDNA clone
RTS1_10_H03_A029 3', mRNA sequence
Length = 825
Score = 192 bits (97), Expect = 3e-047
Identities = 226/269 (84%)
Strand = Plus / Minus
Query: 727 ggatcatccttaaaatctgggttgtcaatcataggtgccttccatttaccctggtagttc 786
|||||||||||||||||||| ||||||||||| ||||| |||||| |||| ||| ||
Sbjct: 277 ggatcatccttaaaatctggattgtcaatcattggtgcaacccattttcccttgtacttt 218
Query: 787 gggttcttgattttcttttgtttccatggtcccttgtattctgggttgggaatggtaggg 846
|| ||||||||||||||| | ||||| ||||||||||| ||||| || |||||||| ||
Sbjct: 217 ggattcttgattttctttggcttccagggtcccttgtactctggattcggaatggttgga 158
Query: 847 gcagtccattcaccatcttcctcatcgtcccagtcctcaggcttcttagcatcagggtca 906
|| |||| || ||||| |||||||||||||||||||| ||||| | ||||| | ||
Sbjct: 157 gctttccactccccatcctcctcatcgtcccagtcctctggctttgtggcatctgaatct 98
Query: 907 ggaatttccttgggaatatcatcatagccctctggcttcttgtcctcagggtcaggaatg 966
|||||||||| |||||| |||||||| ||||| ||||| ||||| || || |||||||||
Sbjct: 97 ggaatttcctggggaatgtcatcatatccctcaggctttttgtcttctggatcaggaatg 38
Query: 967 tactccttgtcatcccagtcctcaggctt 995
|| |||||||| |||||||| || |||||
Sbjct: 37 tattccttgtcttcccagtcttctggctt 9
Score = 44.1 bits (22), Expect = 0.019
Identities = 43/50 (86%)
Strand = Plus / Minus
Query: 559 tcaaaagcagccttttctgcctccttgtgcttgccccaggtctcctctgc 608
|||||||| ||||||| || |||||||| || ||||| |||||||||||
Sbjct: 445 tcaaaagcttccttttcagcatccttgtgttttccccatgtctcctctgc 396
>gb|DR167453.1|DR167453 RTPHOS1_18_H05.g1_A029 Roots minus phosphorous Pinus taeda cDNA
clone RTPHOS1_18_H05_A029 5', mRNA sequence
Length = 509
Score = 192 bits (97), Expect = 3e-047
Identities = 226/269 (84%)
Strand = Plus / Minus
Query: 727 ggatcatccttaaaatctgggttgtcaatcataggtgccttccatttaccctggtagttc 786
|||||||||||||||||||| ||||||||||| ||||| |||||| |||| ||| ||
Sbjct: 282 ggatcatccttaaaatctggattgtcaatcattggtgcaacccattttcccttgtacttt 223
Query: 787 gggttcttgattttcttttgtttccatggtcccttgtattctgggttgggaatggtaggg 846
|| ||||||||||||||| | ||||| ||||||||||| ||||| || |||||||| ||
Sbjct: 222 ggattcttgattttctttggcttccagggtcccttgtactctggattcggaatggttgga 163
Query: 847 gcagtccattcaccatcttcctcatcgtcccagtcctcaggcttcttagcatcagggtca 906
|| |||| || ||||| |||||||||||||||||||| ||||| | ||||| | ||
Sbjct: 162 gctttccactccccatcctcctcatcgtcccagtcctctggctttgtggcatctgaatct 103
Query: 907 ggaatttccttgggaatatcatcatagccctctggcttcttgtcctcagggtcaggaatg 966
|||||||||| |||||| |||||||| ||||| ||||| ||||| || || |||||||||
Sbjct: 102 ggaatttcctggggaatgtcatcatatccctcaggctttttgtcttctggatcaggaatg 43
Query: 967 tactccttgtcatcccagtcctcaggctt 995
|| |||||||| |||||||| || |||||
Sbjct: 42 tattccttgtcttcccagtcttctggctt 14
Score = 44.1 bits (22), Expect = 0.019
Identities = 43/50 (86%)
Strand = Plus / Minus
Query: 559 tcaaaagcagccttttctgcctccttgtgcttgccccaggtctcctctgc 608
|||||||| ||||||| || |||||||| || ||||| |||||||||||
Sbjct: 450 tcaaaagcttccttttcagcatccttgtgttttccccatgtctcctctgc 401
>gb|CF393816.1|CF393816 RTDS2_1_A10.g1_A021 Drought-stressed loblolly pine roots DS2 Pinus
taeda cDNA clone RTDS2_1_A10_A021 5', mRNA sequence
Length = 755
Score = 176 bits (89), Expect = 2e-042
Identities = 224/269 (83%)
Strand = Plus / Minus
Query: 727 ggatcatccttaaaatctgggttgtcaatcataggtgccttccatttaccctggtagttc 786
|||||||||||||||||||| ||||||||||| ||||| |||||| |||| ||| ||
Sbjct: 468 ggatcatccttaaaatctggattgtcaatcattggtgcaacccattttcccttgtacttt 409
Query: 787 gggttcttgattttcttttgtttccatggtcccttgtattctgggttgggaatggtaggg 846
|| ||||||||||||||| | ||||| ||||| ||||| ||||| || |||||||| ||
Sbjct: 408 ggattcttgattttctttggcttccagggtcctttgtactctggattcggaatggttgga 349
Query: 847 gcagtccattcaccatcttcctcatcgtcccagtcctcaggcttcttagcatcagggtca 906
|| |||| || ||||| |||||||||||||||||||| ||||| | ||||| | ||
Sbjct: 348 gctttccactccccatcctcctcatcgtcccagtcctctggctttgtggcatctgaatct 289
Query: 907 ggaatttccttgggaatatcatcatagccctctggcttcttgtcctcagggtcaggaatg 966
|||||||||| ||||| |||||||| ||||| ||||| ||||| || || |||||||||
Sbjct: 288 ggaatttcctgcggaatgtcatcatatccctcaggctttttgtcttctggatcaggaatg 229
Query: 967 tactccttgtcatcccagtcctcaggctt 995
|| |||||||| |||||||| || |||||
Sbjct: 228 tattccttgtcttcccagtcttctggctt 200
Score = 71.9 bits (36), Expect = 8e-011
Identities = 81/96 (84%)
Strand = Plus / Minus
Query: 1074 attatcaatgagaatgctgtatgttgcatcaggacggatgatcaaagtgtaaacatgagt 1133
||||||||||||||||||||| || |||||||| || | || ||||| |||||||||||
Sbjct: 121 attatcaatgagaatgctgtaggtagcatcagggcgaagaatgaaagtataaacatgagt 62
Query: 1134 caactgatcagtctcacaaggcacatccttcttgat 1169
| |||||| || ||||| | ||||||||||||||
Sbjct: 61 aagctgatccgtttcacatgatacatccttcttgat 26
Score = 44.1 bits (22), Expect = 0.019
Identities = 43/50 (86%)
Strand = Plus / Minus
Query: 559 tcaaaagcagccttttctgcctccttgtgcttgccccaggtctcctctgc 608
|||||||| ||||||| || |||||||| || ||||| |||||||||||
Sbjct: 636 tcaaaagcttccttttcagcatccttgtgttttccccatgtctcctctgc 587
>gb|CF668506.1|CF668506 RTCNT1_36_H10.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_36_H10_A029 5', mRNA sequence
Length = 565
Score = 176 bits (89), Expect = 2e-042
Identities = 224/269 (83%)
Strand = Plus / Minus
Query: 727 ggatcatccttaaaatctgggttgtcaatcataggtgccttccatttaccctggtagttc 786
|||||||||||||||||||| ||||||||||| ||||| |||||| |||| ||| ||
Sbjct: 369 ggatcatccttaaaatctggattgtcaatcattggtgcaacccattttcccttgtacttt 310
Query: 787 gggttcttgattttcttttgtttccatggtcccttgtattctgggttgggaatggtaggg 846
|| ||||||||||||||| | ||||| ||||| ||||| ||||| || |||||||| ||
Sbjct: 309 ggattcttgattttctttggcttccagggtcctttgtactctggattcggaatggttgga 250
Query: 847 gcagtccattcaccatcttcctcatcgtcccagtcctcaggcttcttagcatcagggtca 906
|| |||| || ||||| |||||||||||||||||||| ||||| | ||||| | ||
Sbjct: 249 gctttccactccccatcctcctcatcgtcccagtcctctggctttgtggcatctgaatct 190
Query: 907 ggaatttccttgggaatatcatcatagccctctggcttcttgtcctcagggtcaggaatg 966
|||||||||| ||||| |||||||| ||||| ||||| ||||| || || |||||||||
Sbjct: 189 ggaatttcctgcggaatgtcatcatatccctcaggctttttgtcttctggatcaggaatg 130
Query: 967 tactccttgtcatcccagtcctcaggctt 995
|| |||||||| |||||||| || |||||
Sbjct: 129 tattccttgtcttcccagtcttctggctt 101
Score = 44.1 bits (22), Expect = 0.019
Identities = 43/50 (86%)
Strand = Plus / Minus
Query: 559 tcaaaagcagccttttctgcctccttgtgcttgccccaggtctcctctgc 608
|||||||| ||||||| || |||||||| || ||||| |||||||||||
Sbjct: 537 tcaaaagcttccttttcagcatccttgtgttttccccatgtctcctctgc 488
Score = 42.1 bits (21), Expect = 0.075
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 1074 attatcaatgagaatgctgta 1094
|||||||||||||||||||||
Sbjct: 22 attatcaatgagaatgctgta 2
>gb|CF670333.1|CF670333 RTCNT1_49_C06.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_49_C06_A029 5', mRNA sequence
Length = 709
Score = 176 bits (89), Expect = 2e-042
Identities = 224/269 (83%)
Strand = Plus / Minus
Query: 727 ggatcatccttaaaatctgggttgtcaatcataggtgccttccatttaccctggtagttc 786
|||||||||||||||||||| ||||||||||| ||||| |||||| |||| ||| ||
Sbjct: 315 ggatcatccttaaaatctggattgtcaatcattggtgcaacccattttcccttgtacttt 256
Query: 787 gggttcttgattttcttttgtttccatggtcccttgtattctgggttgggaatggtaggg 846
|| ||||||||||||||| | ||||| ||||| ||||| ||||| || |||||||| ||
Sbjct: 255 ggattcttgattttctttggcttccagggtcctttgtactctggattcggaatggttgga 196
Query: 847 gcagtccattcaccatcttcctcatcgtcccagtcctcaggcttcttagcatcagggtca 906
|| |||| || ||||| |||||||||||||||||||| ||||| | ||||| | ||
Sbjct: 195 gctttccactccccatcctcctcatcgtcccagtcctctggctttgtggcatctgaatct 136
Query: 907 ggaatttccttgggaatatcatcatagccctctggcttcttgtcctcagggtcaggaatg 966
|||||||||| ||||| |||||||| ||||| ||||| ||||| || || |||||||||
Sbjct: 135 ggaatttcctgcggaatgtcatcatatccctcaggctttttgtcttctggatcaggaatg 76
Query: 967 tactccttgtcatcccagtcctcaggctt 995
|| |||||||| |||||||| || |||||
Sbjct: 75 tattccttgtcttcccagtcttctggctt 47
Score = 44.1 bits (22), Expect = 0.019
Identities = 43/50 (86%)
Strand = Plus / Minus
Query: 559 tcaaaagcagccttttctgcctccttgtgcttgccccaggtctcctctgc 608
|||||||| ||||||| || |||||||| || ||||| |||||||||||
Sbjct: 483 tcaaaagcttccttttcagcatccttgtgttttccccatgtctcctctgc 434
>gb|DR022118.1|DR022118 STRS1_49_A10.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_49_A10_A034 3', mRNA sequence
Length = 848
Score = 176 bits (89), Expect = 2e-042
Identities = 224/269 (83%)
Strand = Plus / Minus
Query: 727 ggatcatccttaaaatctgggttgtcaatcataggtgccttccatttaccctggtagttc 786
|||||||||||||||||||| ||||||||||| ||||| |||||| |||| ||| ||
Sbjct: 306 ggatcatccttaaaatctggattgtcaatcattggtgcaacccattttcccttgtacttt 247
Query: 787 gggttcttgattttcttttgtttccatggtcccttgtattctgggttgggaatggtaggg 846
|| ||||||||||||||| | ||||| ||||| ||||| ||||| || |||||||| ||
Sbjct: 246 ggattcttgattttctttggcttccagggtcctttgtactctggattcggaatggttgga 187
Query: 847 gcagtccattcaccatcttcctcatcgtcccagtcctcaggcttcttagcatcagggtca 906
|| |||| || ||||| |||||||||||||||||||| ||||| | ||||| | ||
Sbjct: 186 gctttccactccccatcctcctcatcgtcccagtcctctggctttgtggcatctgaatct 127
Query: 907 ggaatttccttgggaatatcatcatagccctctggcttcttgtcctcagggtcaggaatg 966
|||||||||| ||||| |||||||| ||||| ||||| ||||| || || |||||||||
Sbjct: 126 ggaatttcctgcggaatgtcatcatatccctcaggctttttgtcttctggatcaggaatg 67
Query: 967 tactccttgtcatcccagtcctcaggctt 995
|| |||||||| |||||||| || |||||
Sbjct: 66 tattccttgtcttcccagtcttctggctt 38
Score = 44.1 bits (22), Expect = 0.019
Identities = 43/50 (86%)
Strand = Plus / Minus
Query: 559 tcaaaagcagccttttctgcctccttgtgcttgccccaggtctcctctgc 608
|||||||| ||||||| || |||||||| || ||||| |||||||||||
Sbjct: 474 tcaaaagcttccttttcagcatccttgtgttttccccatgtctcctctgc 425
>gb|CF396421.1|CF396421 RTDS2_21_H12.g1_A021 Drought-stressed loblolly pine roots DS2 Pinus
taeda cDNA clone RTDS2_21_H12_A021 5', mRNA sequence
Length = 752
Score = 168 bits (85), Expect = 5e-040
Identities = 223/269 (82%)
Strand = Plus / Minus
Query: 727 ggatcatccttaaaatctgggttgtcaatcataggtgccttccatttaccctggtagttc 786
||||| |||||||||||||| ||||||||||| ||||| |||||| |||| ||| ||
Sbjct: 424 ggatcttccttaaaatctggattgtcaatcattggtgcaacccattttcccttgtacttt 365
Query: 787 gggttcttgattttcttttgtttccatggtcccttgtattctgggttgggaatggtaggg 846
|| ||||||||||||||| | ||||| ||||| ||||| ||||| || |||||||| ||
Sbjct: 364 ggattcttgattttctttggcttccagggtcctttgtactctggattcggaatggttgga 305
Query: 847 gcagtccattcaccatcttcctcatcgtcccagtcctcaggcttcttagcatcagggtca 906
|| |||| || ||||| |||||||||||||||||||| ||||| | ||||| | ||
Sbjct: 304 gctttccactccccatcctcctcatcgtcccagtcctctggctttgtggcatctgaatct 245
Query: 907 ggaatttccttgggaatatcatcatagccctctggcttcttgtcctcagggtcaggaatg 966
|||||||||| ||||| |||||||| ||||| ||||| ||||| || || |||||||||
Sbjct: 244 ggaatttcctgcggaatgtcatcatatccctcaggctttttgtcttctggatcaggaatg 185
Query: 967 tactccttgtcatcccagtcctcaggctt 995
|| |||||||| |||||||| || |||||
Sbjct: 184 tattccttgtcttcccagtcttctggctt 156
Score = 58.0 bits (29), Expect = 1e-006
Identities = 59/69 (85%)
Strand = Plus / Minus
Query: 1074 attatcaatgagaatgctgtatgttgcatcaggacggatgatcaaagtgtaaacatgagt 1133
||||||||||||||||||||| || |||||||| || | || ||||| |||||||||||
Sbjct: 77 attatcaatgagaatgctgtaggtagcatcagggcgaagaatgaaagtataaacatgagt 18
Query: 1134 caactgatc 1142
| ||||||
Sbjct: 17 aagctgatc 9
>gb|AL750674.1|AL750674 AL750674 RN Pinus pinaster cDNA clone RN06A11 similar to
CALRETICULIN, mRNA sequence
Length = 676
Score = 167 bits (84), Expect = 2e-039
Identities = 240/292 (82%)
Strand = Plus / Minus
Query: 726 tggatcatccttaaaatctgggttgtcaatcataggtgccttccatttaccctggtagtt 785
|||||||||||| ||||| || |||||||| || || |||||||||||||||| ||||||
Sbjct: 643 tggatcatccttgaaatcaggattgtcaattattggagccttccatttacccttgtagtt 584
Query: 786 cgggttcttgattttcttttgtttccatggtcccttgtattctgggttgggaatggtagg 845
|| ||||| |||||||| | ||||| ||||| || |||||||| || | ||| || ||
Sbjct: 583 aggattcttaattttcttaggattccacggtcctttatattctggatttgcaatagttgg 524
Query: 846 ggcagtccattcaccatcttcctcatcgtcccagtcctcaggcttcttagcatcagggtc 905
|| ||||| |||||||| ||||| || | ||| ||||| ||||| | ||||| || ||
Sbjct: 523 agctgtccactcaccatcctcctcgtcattccaatcctctggcttagtggcatctggatc 464
Query: 906 aggaatttccttgggaatatcatcatagccctctggcttcttgtcctcagggtcaggaat 965
||| |||||||| ||||| |||||||| ||||| || |||||||| || || ||||||||
Sbjct: 463 aggtatttcctttggaatgtcatcatatccctcaggtttcttgtcttctggatcaggaat 404
Query: 966 gtactccttgtcatcccagtcctcaggcttcttagcctctgggtccttgatt 1017
||| ||||| |||||||| ||||||||||| || || | ||||||||||||
Sbjct: 403 gtattccttatcatcccaatcctcaggctttttggcattagggtccttgatt 352
Score = 77.8 bits (39), Expect = 1e-012
Identities = 126/155 (81%)
Strand = Plus / Minus
Query: 1204 tgaaccttcttggtgctgtacccacagatatctggtccaaacataatgctgtaagatgtg 1263
||||||||||| |||||||| || || || ||||||||||||||||| || |||| |||
Sbjct: 165 tgaaccttcttagtgctgtaaccgcaaatgtctggtccaaacataatactataaggtgtc 106
Query: 1264 tctccaccaaatttcttctggtctacatcaccacccagcaatttgacgtagccaccgccg 1323
||||||| || ||||||||||| || ||||||| | ||| || || |||||||| ||
Sbjct: 105 tctccactgaaattcttctggtcaacttcaccacttaacaactttacatagccaccacca 46
Query: 1324 cagtcaagcttctgctcgtgcttcacagagaactg 1358
|| ||||| || || || ||||| ||||| |||||
Sbjct: 45 caatcaagtttttgttcatgcttgacagaaaactg 11
>gb|CF475292.1|CF475292 RTWW2_13_H04.b1_A021 Well-watered loblolly pine roots WW2 Pinus taeda
cDNA clone RTWW2_13_H04_A021 3', mRNA sequence
Length = 551
Score = 167 bits (84), Expect = 2e-039
Identities = 240/292 (82%)
Strand = Plus / Minus
Query: 726 tggatcatccttaaaatctgggttgtcaatcataggtgccttccatttaccctggtagtt 785
|||||||||||| ||||| || ||||||||||| || |||||||||||||||| ||||||
Sbjct: 378 tggatcatccttgaaatcaggattgtcaatcattggagccttccatttacccttgtagtt 319
Query: 786 cgggttcttgattttcttttgtttccatggtcccttgtattctgggttgggaatggtagg 845
|| ||||| |||||||| | ||||| ||||| || |||||||| || | ||| || ||
Sbjct: 318 aggattcttaattttcttaggcttccagggtcctttatattctggatttgcaatagttgg 259
Query: 846 ggcagtccattcaccatcttcctcatcgtcccagtcctcaggcttcttagcatcagggtc 905
|| ||||| |||||||| ||||| || | ||| ||||| ||||| | ||||| || ||
Sbjct: 258 agctgtccactcaccatcctcctcgtcattccaatcctcgggcttagtggcatctggatc 199
Query: 906 aggaatttccttgggaatatcatcatagccctctggcttcttgtcctcagggtcaggaat 965
||| |||||||| ||||| |||||||| ||||| || |||||||| || || ||||||||
Sbjct: 198 aggtatttcctttggaatgtcatcatatccctcaggtttcttgtcttctggatcaggaat 139
Query: 966 gtactccttgtcatcccagtcctcaggcttcttagcctctgggtccttgatt 1017
|| ||||| |||||||| ||||||||||| || || | ||||||||||||
Sbjct: 138 atattccttatcatcccaatcctcaggctttttggcattagggtccttgatt 87
Score = 40.1 bits (20), Expect = 0.30
Identities = 47/56 (83%)
Strand = Plus / Minus
Query: 553 gcctcatcaaaagcagccttttctgcctccttgtgcttgccccaggtctcctctgc 608
||||||||||| || ||||||| || |||||||| ||| |||| || ||||||||
Sbjct: 551 gcctcatcaaaggcttccttttcggcatccttgtgtttggcccatgtttcctctgc 496
>gb|CO366415.1|CO366415 RTK1_27_E11.g1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_27_E11_A029 5', mRNA sequence
Length = 797
Score = 167 bits (84), Expect = 2e-039
Identities = 240/292 (82%)
Strand = Plus / Plus
Query: 726 tggatcatccttaaaatctgggttgtcaatcataggtgccttccatttaccctggtagtt 785
|||||||||||| ||||| || ||||||||||| || |||||||||||||||| ||||||
Sbjct: 164 tggatcatccttgaaatcaggattgtcaatcattggagccttccatttacccttgtagtt 223
Query: 786 cgggttcttgattttcttttgtttccatggtcccttgtattctgggttgggaatggtagg 845
|| ||||| |||||||| | ||||| ||||| || |||||||| || | ||| || ||
Sbjct: 224 aggattcttaattttcttaggcttccagggtcctttatattctggatttgcaatagttgg 283
Query: 846 ggcagtccattcaccatcttcctcatcgtcccagtcctcaggcttcttagcatcagggtc 905
|| ||||| |||||||| ||||| || | ||| ||||| ||||| | ||||| || ||
Sbjct: 284 agctgtccactcaccatcctcctcgtcattccaatcctcgggcttagtggcatctggatc 343
Query: 906 aggaatttccttgggaatatcatcatagccctctggcttcttgtcctcagggtcaggaat 965
||| |||||||| ||||| |||||||| ||||| || |||||||| || || ||||||||
Sbjct: 344 aggtatttcctttggaatgtcatcatatccctcaggtttcttgtcttctggatcaggaat 403
Query: 966 gtactccttgtcatcccagtcctcaggcttcttagcctctgggtccttgatt 1017
|| ||||| |||||||| ||||||||||| || || | ||||||||||||
Sbjct: 404 atattccttatcatcccaatcctcaggctttttggcattagggtccttgatt 455
Score = 73.8 bits (37), Expect = 2e-011
Identities = 220/281 (78%)
Strand = Plus / Plus
Query: 1078 tcaatgagaatgctgtatgttgcatcaggacggatgatcaaagtgtaaacatgagtcaac 1137
|||||||| ||||| ||||| ||||| || || | || ||||| ||||||||||| | |
Sbjct: 516 tcaatgaggatgctatatgtagcatccggtcgaagaatgaaagtataaacatgagtaagc 575
Query: 1138 tgatcagtctcacaaggcacatccttcttgatcaagtggttcttgccatccttggtcagg 1197
||||| || |||||||| ||||| || ||||| |||||||| || | | | |||
Sbjct: 576 tgatctgtttcacaagggacatcttttttgataggatggttcttccctttatatgacaga 635
Query: 1198 atagtgtgaaccttcttggtgctgtacccacagatatctggtccaaacataatgctgtaa 1257
|| || ||||||||||| |||||||| || || || ||||||||||||||||| || ||
Sbjct: 636 atggtatgaaccttcttagtgctgtaaccgcaaatgtctggtccaaacataatactatac 695
Query: 1258 gatgtgtctccaccaaatttcttctggtctacatcaccacccagcaatttgacgtagcca 1317
| ||| ||||||| || ||||||||||| | ||||||| | ||| || |||||||||
Sbjct: 696 ggtgtctctccactgaaattcttctggtcaatttcaccacttaacaactttacgtagcca 755
Query: 1318 ccgccgcagtcaagcttctgctcgtgcttcacagagaactg 1358
|| || || ||||| || || || ||||| ||||| |||||
Sbjct: 756 ccaccacaatcaagtttttgttcatgcttgacagaaaactg 796
>gb|CV036192.1|CV036192 RTNACL1_57_H03.b1_A029 Roots plus added NaCl Pinus taeda cDNA clone
RTNACL1_57_H03_A029 3', mRNA sequence
Length = 758
Score = 167 bits (84), Expect = 2e-039
Identities = 240/292 (82%)
Strand = Plus / Minus
Query: 726 tggatcatccttaaaatctgggttgtcaatcataggtgccttccatttaccctggtagtt 785
|||||||||||| ||||| || ||||||||||| || |||||||||||||||| ||||||
Sbjct: 585 tggatcatccttgaaatcaggattgtcaatcattggagccttccatttacccttgtagtt 526
Query: 786 cgggttcttgattttcttttgtttccatggtcccttgtattctgggttgggaatggtagg 845
|| ||||| |||||||| | ||||| ||||| || |||||||| || | ||| || ||
Sbjct: 525 aggattcttaattttcttaggcttccagggtcctttatattctggatttgcaatagttgg 466
Query: 846 ggcagtccattcaccatcttcctcatcgtcccagtcctcaggcttcttagcatcagggtc 905
|| ||||| |||||||| ||||| || | ||| ||||| ||||| | ||||| || ||
Sbjct: 465 agctgtccactcaccatcctcctcgtcattccaatcctcgggcttagtggcatctggatc 406
Query: 906 aggaatttccttgggaatatcatcatagccctctggcttcttgtcctcagggtcaggaat 965
||| |||||||| ||||| |||||||| ||||| || |||||||| || || ||||||||
Sbjct: 405 aggtatttcctttggaatgtcatcatatccctcaggtttcttgtcttctggatcaggaat 346
Query: 966 gtactccttgtcatcccagtcctcaggcttcttagcctctgggtccttgatt 1017
|| ||||| |||||||| ||||||||||| || || | ||||||||||||
Sbjct: 345 atattccttatcatcccaatcctcaggctttttggcattagggtccttgatt 294
Score = 73.8 bits (37), Expect = 2e-011
Identities = 166/209 (79%)
Strand = Plus / Minus
Query: 1078 tcaatgagaatgctgtatgttgcatcaggacggatgatcaaagtgtaaacatgagtcaac 1137
|||||||| ||||| ||||| ||||| || || | || ||||| ||||||||||| | |
Sbjct: 233 tcaatgagtatgctatatgtagcatccggtcgaagaatgaaagtataaacatgagtaagc 174
Query: 1138 tgatcagtctcacaaggcacatccttcttgatcaagtggttcttgccatccttggtcagg 1197
||||| || |||||||| ||||| || ||||| |||||||| || | | | |||
Sbjct: 173 tgatctgtttcacaagggacatcttttttgataggatggttcttccctttatatgacaga 114
Query: 1198 atagtgtgaaccttcttggtgctgtacccacagatatctggtccaaacataatgctgtaa 1257
|| || ||||||||||| |||||||| || || || ||||||||||||||||| || |||
Sbjct: 113 atggtatgaaccttcttagtgctgtaaccgcaaatgtctggtccaaacataatactataa 54
Query: 1258 gatgtgtctccaccaaatttcttctggtc 1286
| ||| ||||||| || |||||||||||
Sbjct: 53 ggtgtctctccactgaaattcttctggtc 25
>gb|DR012575.1|DR012575 HEAT1_13_E12.g1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_13_E12_A029 5', mRNA sequence
Length = 755
Score = 167 bits (84), Expect = 2e-039
Identities = 240/292 (82%)
Strand = Plus / Plus
Query: 726 tggatcatccttaaaatctgggttgtcaatcataggtgccttccatttaccctggtagtt 785
|||||||||||| ||||| || ||||||||||| || |||||||||||||||| ||||||
Sbjct: 195 tggatcatccttgaaatcaggattgtcaatcattggagccttccatttacccttgtagtt 254
Query: 786 cgggttcttgattttcttttgtttccatggtcccttgtattctgggttgggaatggtagg 845
|| ||||| |||||||| | ||||| ||||| || |||||||| || | ||| || ||
Sbjct: 255 aggattcttaattttcttaggcttccagggtcctttatattctggatttgcaatagttgg 314
Query: 846 ggcagtccattcaccatcttcctcatcgtcccagtcctcaggcttcttagcatcagggtc 905
|| ||||| |||||||| ||||| || | ||| ||||| ||||| | ||||| || ||
Sbjct: 315 agctgtccactcaccatcctcctcgtcattccaatcctcgggcttagtggcatctggatc 374
Query: 906 aggaatttccttgggaatatcatcatagccctctggcttcttgtcctcagggtcaggaat 965
||| |||||||| ||||| |||||||| ||||| || |||||||| || || ||||||||
Sbjct: 375 aggtatttcctttggaatgtcatcatatccctcaggtttcttgtcttctggatcaggaat 434
Query: 966 gtactccttgtcatcccagtcctcaggcttcttagcctctgggtccttgatt 1017
|| ||||| |||||||| ||||||||||| || || | ||||||||||||
Sbjct: 435 atattccttatcatcccaatcctcaggctttttggcattagggtccttgatt 486
Score = 65.9 bits (33), Expect = 5e-009
Identities = 165/209 (78%)
Strand = Plus / Plus
Query: 1078 tcaatgagaatgctgtatgttgcatcaggacggatgatcaaagtgtaaacatgagtcaac 1137
|||||||| ||||| ||||| ||||| || || | || ||||| ||||||||||| | |
Sbjct: 547 tcaatgaggatgctatatgtagcatccggtcgaagaatgaaagtataaacatgagtaagc 606
Query: 1138 tgatcagtctcacaaggcacatccttcttgatcaagtggttcttgccatccttggtcagg 1197
||||| || |||||||| ||||| || ||||| |||||||| || | | | |||
Sbjct: 607 tgatctgtttcacaagggacatcttttttgataggatggttcttccctttatatgacaga 666
Query: 1198 atagtgtgaaccttcttggtgctgtacccacagatatctggtccaaacataatgctgtaa 1257
|| || ||||||||||| |||||||| || || || ||||||||||||||||| || ||
Sbjct: 667 atggtatgaaccttcttagtgctgtaaccgcaaatgtctggtccaaacataatactatac 726
Query: 1258 gatgtgtctccaccaaatttcttctggtc 1286
| ||| ||||||| || |||||||||||
Sbjct: 727 ggtgtctctccactgaaattcttctggtc 755
Score = 50.1 bits (25), Expect = 3e-004
Identities = 55/65 (84%)
Strand = Plus / Plus
Query: 544 tttttctcggcctcatcaaaagcagccttttctgcctccttgtgcttgccccaggtctcc 603
|||||||| ||||||||||| || ||||||| || |||||||| ||| |||| || |||
Sbjct: 13 tttttctctgcctcatcaaaggcttccttttcggcatccttgtgtttggcccatgtttcc 72
Query: 604 tctgc 608
|||||
Sbjct: 73 tctgc 77
>gb|DR052273.1|DR052273 RTCA1_3_C03.g1_A029 Roots minus calcium Pinus taeda cDNA clone
RTCA1_3_C03_A029 5', mRNA sequence
Length = 860
Score = 167 bits (84), Expect = 2e-039
Identities = 240/292 (82%)
Strand = Plus / Minus
Query: 726 tggatcatccttaaaatctgggttgtcaatcataggtgccttccatttaccctggtagtt 785
|||||||||||| ||||| || ||||||||||| || |||||||||||||||| ||||||
Sbjct: 741 tggatcatccttgaaatcaggattgtcaatcattggagccttccatttacccttgtagtt 682
Query: 786 cgggttcttgattttcttttgtttccatggtcccttgtattctgggttgggaatggtagg 845
|| ||||| |||||||| | ||||| ||||| || |||||||| || | ||| || ||
Sbjct: 681 aggattcttaattttcttaggcttccagggtcctttatattctggatttgcaatagttgg 622
Query: 846 ggcagtccattcaccatcttcctcatcgtcccagtcctcaggcttcttagcatcagggtc 905
|| ||||| |||||||| ||||| || | ||| ||||| ||||| | ||||| || ||
Sbjct: 621 agctgtccactcaccatcctcctcgtcattccaatcctcgggcttagtggcatctggatc 562
Query: 906 aggaatttccttgggaatatcatcatagccctctggcttcttgtcctcagggtcaggaat 965
||| |||||||| ||||| |||||||| ||||| || |||||||| || || ||||||||
Sbjct: 561 aggtatttcctttggaatgtcatcatatccctcaggtttcttgtcttctggatcaggaat 502
Query: 966 gtactccttgtcatcccagtcctcaggcttcttagcctctgggtccttgatt 1017
|| ||||| |||||||| ||||||||||| || || | ||||||||||||
Sbjct: 501 atattccttatcatcccaatcctcaggctttttggcattagggtccttgatt 450
Score = 111 bits (56), Expect = 1e-022
Identities = 254/320 (79%)
Strand = Plus / Minus
Query: 1078 tcaatgagaatgctgtatgttgcatcaggacggatgatcaaagtgtaaacatgagtcaac 1137
|||||||| ||||| ||||| ||||| || || | || ||||| ||||||||||| | |
Sbjct: 389 tcaatgaggatgctatatgtagcatccggtcgaagaatgaaagtataaacatgagtaagc 330
Query: 1138 tgatcagtctcacaaggcacatccttcttgatcaagtggttcttgccatccttggtcagg 1197
||||| || |||||||| ||||| || ||||| |||||||| || | | | |||
Sbjct: 329 tgatctgtttcacaagggacatcttttttgataggatggttcttccctttatatgacaga 270
Query: 1198 atagtgtgaaccttcttggtgctgtacccacagatatctggtccaaacataatgctgtaa 1257
|| || ||||||||||| |||||||| || || || ||||||||||||||||| || ||
Sbjct: 269 atggtatgaaccttcttagtgctgtaaccgcaaatgtctggtccaaacataatactatac 210
Query: 1258 gatgtgtctccaccaaatttcttctggtctacatcaccacccagcaatttgacgtagcca 1317
| ||| ||||||| || ||||||||||| | ||||||| | ||| || | |||||||
Sbjct: 209 ggtgtctctccactgaaattcttctggtcaatttcaccacttaacaactttatgtagcca 150
Query: 1318 ccgccgcagtcaagcttctgctcgtgcttcacagagaactgcagcaccagggtcttatcc 1377
|| || || ||||| || || || ||||| ||||| ||||| || || ||||||||||||
Sbjct: 149 ccaccacaatcaagtttttgttcatgcttgacagaaaactgaagaacaagggtcttatcc 90
Query: 1378 ttgttgctgaactcagggta 1397
|||||||| |||||||||||
Sbjct: 89 ttgttgctaaactcagggta 70
>gb|DR744725.1|DR744725 RTCU1_24_B03.g1_A029 Roots plus added copper Pinus taeda cDNA clone
RTCU1_24_B03_A029 5', mRNA sequence
Length = 747
Score = 167 bits (84), Expect = 2e-039
Identities = 240/292 (82%)
Strand = Plus / Minus
Query: 726 tggatcatccttaaaatctgggttgtcaatcataggtgccttccatttaccctggtagtt 785
|||||||||||| ||||| || ||||||||||| || |||||||||||||||| ||||||
Sbjct: 571 tggatcatccttgaaatcaggattgtcaatcattggagccttccatttacccttgtagtt 512
Query: 786 cgggttcttgattttcttttgtttccatggtcccttgtattctgggttgggaatggtagg 845
|| ||||| |||||||| | ||||| ||||| || |||||||| || | ||| || ||
Sbjct: 511 aggattcttaattttcttaggcttccagggtcctttatattctggatttgcaatagttgg 452
Query: 846 ggcagtccattcaccatcttcctcatcgtcccagtcctcaggcttcttagcatcagggtc 905
|| ||||| |||||||| ||||| || | ||| ||||| ||||| | ||||| || ||
Sbjct: 451 agctgtccactcaccatcctcctcgtcattccaatcctcgggcttagtggcatctggatc 392
Query: 906 aggaatttccttgggaatatcatcatagccctctggcttcttgtcctcagggtcaggaat 965
||| |||||||| ||||| |||||||| ||||| || |||||||| || || ||||||||
Sbjct: 391 aggtatttcctttggaatgtcatcatatccctcaggtttcttgtcttctggatcaggaat 332
Query: 966 gtactccttgtcatcccagtcctcaggcttcttagcctctgggtccttgatt 1017
|| ||||| |||||||| ||||||||||| || || | ||||||||||||
Sbjct: 331 atattccttatcatcccaatcctcaggctttttggcattagggtccttgatt 280
Score = 65.9 bits (33), Expect = 5e-009
Identities = 165/209 (78%)
Strand = Plus / Minus
Query: 1078 tcaatgagaatgctgtatgttgcatcaggacggatgatcaaagtgtaaacatgagtcaac 1137
|||||||| ||||| ||||| ||||| || || | || ||||| ||||||||||| | |
Sbjct: 219 tcaatgaggatgctatatgtagcatccggtcgaagaatgaaagtataaacatgagtaagc 160
Query: 1138 tgatcagtctcacaaggcacatccttcttgatcaagtggttcttgccatccttggtcagg 1197
||||| || |||||||| ||||| || ||||| |||||||| || | | | |||
Sbjct: 159 tgatctgtttcacaagggacatcttttttgataggatggttcttccctttatatgacaga 100
Query: 1198 atagtgtgaaccttcttggtgctgtacccacagatatctggtccaaacataatgctgtaa 1257
|| || ||||||||||| |||||||| || || || ||||||||||||||||| || ||
Sbjct: 99 atggtatgaaccttcttagtgctgtaaccgcaaatgtctggtccaaacataatactatac 40
Query: 1258 gatgtgtctccaccaaatttcttctggtc 1286
| ||| ||||||| || |||||||||||
Sbjct: 39 ggtgtctctccactgaaattcttctggtc 11
Score = 40.1 bits (20), Expect = 0.30
Identities = 47/56 (83%)
Strand = Plus / Minus
Query: 553 gcctcatcaaaagcagccttttctgcctccttgtgcttgccccaggtctcctctgc 608
||||||||||| || ||||||| || |||||||| ||| |||| || ||||||||
Sbjct: 744 gcctcatcaaaggcttccttttcggcatccttgtgtttggcccatgtttcctctgc 689
>gb|AF283816.1|AF283816 Pinus taeda calreticulin mRNA, complete cds
Length = 1593
Score = 167 bits (84), Expect = 2e-039
Identities = 240/292 (82%)
Strand = Plus / Minus
Query: 726 tggatcatccttaaaatctgggttgtcaatcataggtgccttccatttaccctggtagtt 785
|||||||||||| ||||| || ||||||||||| || |||||||||||||||| ||||||
Sbjct: 941 tggatcatccttgaaatcaggattgtcaatcattggagccttccatttacccttgtagtt 882
Query: 786 cgggttcttgattttcttttgtttccatggtcccttgtattctgggttgggaatggtagg 845
|| ||||| |||||||| | ||||| ||||| || |||||||| || | ||| || ||
Sbjct: 881 aggattcttaattttcttaggcttccagggtcctttatattctggatttgcaatagttgg 822
Query: 846 ggcagtccattcaccatcttcctcatcgtcccagtcctcaggcttcttagcatcagggtc 905
|| ||||| |||||||| ||||| || | ||| ||||| ||||| | ||||| || ||
Sbjct: 821 agctgtccactcaccatcctcctcgtcattccaatcctcgggcttagtggcatctggatc 762
Query: 906 aggaatttccttgggaatatcatcatagccctctggcttcttgtcctcagggtcaggaat 965
||| |||||||| ||||| |||||||| ||||| || |||||||| || || ||||||||
Sbjct: 761 aggtatttcctttggaatgtcatcatatccctcaggtttcttgtcttctggatcaggaat 702
Query: 966 gtactccttgtcatcccagtcctcaggcttcttagcctctgggtccttgatt 1017
|| ||||| |||||||| ||||||||||| || || | ||||||||||||
Sbjct: 701 atattccttatcatcccaatcctcaggctttttggcattagggtccttgatt 650
Score = 115 bits (58), Expect = 6e-024
Identities = 160/194 (82%)
Strand = Plus / Minus
Query: 1204 tgaaccttcttggtgctgtacccacagatatctggtccaaacataatgctgtaagatgtg 1263
||||||||||| |||||||| || || || ||||||||||||||||| || || | |||
Sbjct: 466 tgaaccttcttagtgctgtaaccgcaaatgtctggtccaaacataatactatacggtgtc 407
Query: 1264 tctccaccaaatttcttctggtctacatcaccacccagcaatttgacgtagccaccgccg 1323
||||||| || ||||||||||| | ||||||| | ||| || ||||||||||| ||
Sbjct: 406 tctccactgaaattcttctggtcaatttcaccacttaacaactttacgtagccaccacca 347
Query: 1324 cagtcaagcttctgctcgtgcttcacagagaactgcagcaccagggtcttatccttgttg 1383
|| ||||| || || || ||||| ||||| ||||| || || ||||||||||||||||||
Sbjct: 346 caatcaagtttttgttcatgcttgacagaaaactgaagaacaagggtcttatccttgttg 287
Query: 1384 ctgaactcagggta 1397
|| |||||||||||
Sbjct: 286 ctaaactcagggta 273
Score = 63.9 bits (32), Expect = 2e-008
Identities = 68/80 (85%)
Strand = Plus / Minus
Query: 529 tcctcttcttccttctttttctcggcctcatcaaaagcagccttttctgcctccttgtgc 588
||||| ||||| ||||||||||| ||||||||||| || ||||||| || ||||||||
Sbjct: 1138 tcctcctcttctttctttttctctgcctcatcaaaggcttccttttcggcatccttgtgt 1079
Query: 589 ttgccccaggtctcctctgc 608
||| |||| || ||||||||
Sbjct: 1078 ttggcccatgtttcctctgc 1059
Score = 48.1 bits (24), Expect = 0.001
Identities = 75/92 (81%)
Strand = Plus / Minus
Query: 1078 tcaatgagaatgctgtatgttgcatcaggacggatgatcaaagtgtaaacatgagtcaac 1137
|||||||| ||||| ||||| ||||| || || | || ||||| ||||||||||| | |
Sbjct: 589 tcaatgaggatgctatatgtagcatccggtcgaagaatgaaagtataaacatgagtaagc 530
Query: 1138 tgatcagtctcacaaggcacatccttcttgat 1169
||||| || |||||||| ||||| || |||||
Sbjct: 529 tgatctgtttcacaagggacatcttttttgat 498
>gb|DR019100.1|DR019100 STRS1_27_G03.g1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_27_G03_A034 5', mRNA sequence
Length = 867
Score = 165 bits (83), Expect = 8e-039
Identities = 239/291 (82%)
Strand = Plus / Minus
Query: 726 tggatcatccttaaaatctgggttgtcaatcataggtgccttccatttaccctggtagtt 785
|||||||||||| ||||| || ||||||||||| || |||||||||||||||| ||||||
Sbjct: 319 tggatcatccttgaaatcaggattgtcaatcattggagccttccatttacccttgtagtt 260
Query: 786 cgggttcttgattttcttttgtttccatggtcccttgtattctgggttgggaatggtagg 845
|| ||||| |||||||| | ||||| ||||| || |||||||| || | ||| || ||
Sbjct: 259 aggattcttaattttcttaggcttccagggtcctttatattctggatttgcaatagttgg 200
Query: 846 ggcagtccattcaccatcttcctcatcgtcccagtcctcaggcttcttagcatcagggtc 905
|| ||||| |||||||| ||||| || | ||| ||||| ||||| | ||||| || ||
Sbjct: 199 agctgtccactcaccatcctcctcgtcattccaatcctcgggcttagtggcatctggatc 140
Query: 906 aggaatttccttgggaatatcatcatagccctctggcttcttgtcctcagggtcaggaat 965
||| |||||||| ||||| |||||||| ||||| || |||||||| || || ||||||||
Sbjct: 139 aggtatttcctttggaatgtcatcatatccctcaggtttcttgtcttctggatcaggaat 80
Query: 966 gtactccttgtcatcccagtcctcaggcttcttagcctctgggtccttgat 1016
|| ||||| |||||||| ||||||||||| || || | |||||||||||
Sbjct: 79 atattccttatcatcccaatcctcaggctttttggcattagggtccttgat 29
Score = 63.9 bits (32), Expect = 2e-008
Identities = 68/80 (85%)
Strand = Plus / Minus
Query: 529 tcctcttcttccttctttttctcggcctcatcaaaagcagccttttctgcctccttgtgc 588
||||| ||||| ||||||||||| ||||||||||| || ||||||| || ||||||||
Sbjct: 516 tcctcctcttctttctttttctctgcctcatcaaaggcttccttttcggcatccttgtgt 457
Query: 589 ttgccccaggtctcctctgc 608
||| |||| || ||||||||
Sbjct: 456 ttggcccatgtttcctctgc 437
>gb|AW289804.1|AW289804 NXNV006D09F Nsf Xylem Normal wood Vertical Pinus taeda cDNA clone
NXNV006D09 5', mRNA sequence
Length = 418
Score = 161 bits (81), Expect = 1e-037
Identities = 237/289 (82%)
Strand = Plus / Minus
Query: 729 atcatccttaaaatctgggttgtcaatcataggtgccttccatttaccctggtagttcgg 788
||||||||| ||||| || ||||||||||| || |||||||||||||||| |||||| ||
Sbjct: 346 atcatccttgaaatcaggattgtcaatcattggagccttccatttacccttgtagttagg 287
Query: 789 gttcttgattttcttttgtttccatggtcccttgtattctgggttgggaatggtaggggc 848
||||| |||||||| | ||||| ||||| || |||||||| || | ||| || || ||
Sbjct: 286 attcttaattttcttaggcttccagggtcctttatattctggatttgcaatagttggagc 227
Query: 849 agtccattcaccatcttcctcatcgtcccagtcctcaggcttcttagcatcagggtcagg 908
||||| |||||||| ||||| || | ||| ||||| ||||| | ||||| || |||||
Sbjct: 226 tgtccactcaccatcctcctcgtcattccaatcctcgggcttagtggcatctggatcagg 167
Query: 909 aatttccttgggaatatcatcatagccctctggcttcttgtcctcagggtcaggaatgta 968
|||||||| ||||| |||||||| ||||| || |||||||| || || |||||||| ||
Sbjct: 166 tatttcctttggaatgtcatcatatccctcaggtttcttgtcttctggatcaggaatata 107
Query: 969 ctccttgtcatcccagtcctcaggcttcttagcctctgggtccttgatt 1017
||||| |||||||| ||||||||||| || || | ||||||||||||
Sbjct: 106 ttccttatcatcccaatcctcaggctttttggcattagggtccttgatt 58
>gb|CD028390.1|CD028390 NXNV006D09 Nsf Xylem Normal wood Vertical Pinus taeda cDNA clone
NXNV006D09 5' similar to Arabidopsis thaliana sequence
At1g56340 putative protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA sequence
Length = 418
Score = 161 bits (81), Expect = 1e-037
Identities = 237/289 (82%)
Strand = Plus / Minus
Query: 729 atcatccttaaaatctgggttgtcaatcataggtgccttccatttaccctggtagttcgg 788
||||||||| ||||| || ||||||||||| || |||||||||||||||| |||||| ||
Sbjct: 346 atcatccttgaaatcaggattgtcaatcattggagccttccatttacccttgtagttagg 287
Query: 789 gttcttgattttcttttgtttccatggtcccttgtattctgggttgggaatggtaggggc 848
||||| |||||||| | ||||| ||||| || |||||||| || | ||| || || ||
Sbjct: 286 attcttaattttcttaggcttccagggtcctttatattctggatttgcaatagttggagc 227
Query: 849 agtccattcaccatcttcctcatcgtcccagtcctcaggcttcttagcatcagggtcagg 908
||||| |||||||| ||||| || | ||| ||||| ||||| | ||||| || |||||
Sbjct: 226 tgtccactcaccatcctcctcgtcattccaatcctcgggcttagtggcatctggatcagg 167
Query: 909 aatttccttgggaatatcatcatagccctctggcttcttgtcctcagggtcaggaatgta 968
|||||||| ||||| |||||||| ||||| || |||||||| || || |||||||| ||
Sbjct: 166 tatttcctttggaatgtcatcatatccctcaggtttcttgtcttctggatcaggaatata 107
Query: 969 ctccttgtcatcccagtcctcaggcttcttagcctctgggtccttgatt 1017
||||| |||||||| ||||||||||| || || | ||||||||||||
Sbjct: 106 ttccttatcatcccaatcctcaggctttttggcattagggtccttgatt 58
>gb|CO364984.1|CO364984 RTK1_23_A06.b1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_23_A06_A029 3', mRNA sequence
Length = 825
Score = 159 bits (80), Expect = 5e-037
Identities = 215/260 (82%)
Strand = Plus / Minus
Query: 727 ggatcatccttaaaatctgggttgtcaatcataggtgccttccatttaccctggtagttc 786
|||||||||||||||||||| ||||||||||| ||||| |||||| |||| ||| ||
Sbjct: 289 ggatcatccttaaaatctggattgtcaatcattggtgcaacccattttcccttgtacttt 230
Query: 787 gggttcttgattttcttttgtttccatggtcccttgtattctgggttgggaatggtaggg 846
|| ||||||||||||||| | ||||| ||||| ||||| || || || |||||||| ||
Sbjct: 229 ggattcttgattttctttggcttccagggtcctttgtactcaggattcggaatggttgga 170
Query: 847 gcagtccattcaccatcttcctcatcgtcccagtcctcaggcttcttagcatcagggtca 906
|| |||| || ||||| |||||||||||||||||||| ||||| | ||||| | ||
Sbjct: 169 gctttccactccccatcctcctcatcgtcccagtcctctggctttgtggcatctgaatct 110
Query: 907 ggaatttccttgggaatatcatcatagccctctggcttcttgtcctcagggtcaggaatg 966
|||||||||| ||||| |||||||| ||||| |||| ||||| || || |||||||||
Sbjct: 109 ggaatttcctgcggaatgtcatcatatccctcaagctttttgtcttctggatcaggaatg 50
Query: 967 tactccttgtcatcccagtc 986
|| |||||||| ||||||||
Sbjct: 49 tattccttgtcttcccagtc 30
Score = 44.1 bits (22), Expect = 0.019
Identities = 43/50 (86%)
Strand = Plus / Minus
Query: 559 tcaaaagcagccttttctgcctccttgtgcttgccccaggtctcctctgc 608
|||||||| ||||||| || |||||||| || ||||| |||||||||||
Sbjct: 457 tcaaaagcttccttttcagcatccttgtgttttccccatgtctcctctgc 408
>gb|BF220810.1|BF220810 NXCI_154_B05_F NXCI (Nsf Xylem Compression wood Inclined) Pinus taeda
cDNA clone NXCI_154_B05 5' similar to Arabidopsis
thaliana sequence At1g56340 putative protein see
http://mips.gsf.de/proj/thal/db/index.html, mRNA sequence
Length = 378
Score = 153 bits (77), Expect = 3e-035
Identities = 235/288 (81%)
Strand = Plus / Minus
Query: 730 tcatccttaaaatctgggttgtcaatcataggtgccttccatttaccctggtagttcggg 789
|||||||| ||||| || ||||||||||| || | |||||||||||||| |||||| ||
Sbjct: 336 tcatccttgaaatcaggattgtcaatcattggagncttccatttacccttgtagttagga 277
Query: 790 ttcttgattttcttttgtttccatggtcccttgtattctgggttgggaatggtaggggca 849
||||| |||||||| | ||||| ||||| || |||||||| || | ||| || || ||
Sbjct: 276 ttcttaattttcttaggcttccagggtcctttatattctggatttgcaatagttggagct 217
Query: 850 gtccattcaccatcttcctcatcgtcccagtcctcaggcttcttagcatcagggtcagga 909
||||| |||||||| ||||| || | ||| ||||| ||||| | ||||| || |||||
Sbjct: 216 gtccactcaccatcctcctcgtcattccaatcctcgggcttagtggcatctggatcaggt 157
Query: 910 atttccttgggaatatcatcatagccctctggcttcttgtcctcagggtcaggaatgtac 969
|||||||| ||||| |||||||| ||||| || |||||||| || || |||||||| ||
Sbjct: 156 atttcctttggaatgtcatcatatccctcaggtttcttgtcttctggatcaggaatatat 97
Query: 970 tccttgtcatcccagtcctcaggcttcttagcctctgggtccttgatt 1017
||||| |||||||| ||||||||||| || || | ||||||||||||
Sbjct: 96 tccttatcatcccaatcctcaggctttttggcattagggtccttgatt 49
>gb|BE662548.1|BE662548 ST87/ST87F06 Pine TriplEx shoot tip library Pinus taeda cDNA clone
ST87/ST87F06, mRNA sequence
Length = 401
Score = 145 bits (73), Expect = 7e-033
Identities = 211/257 (82%)
Strand = Plus / Minus
Query: 739 aaatctgggttgtcaatcataggtgccttccatttaccctggtagttcgggttcttgatt 798
|||||||| ||||||||||| ||||| |||||| |||| ||| || || |||||||||
Sbjct: 341 aaatctggattgtcaatcattggtgcaacccattttcccttgtactttggattcttgatt 282
Query: 799 ttcttttgtttccatggtcccttgtattctgggttgggaatggtaggggcagtccattca 858
|||||| | ||||| ||||| ||||| ||||| || |||||||| || || |||| ||
Sbjct: 281 ttctttggcttccagggtcctttgtactctggattcggaatggttggagctttccactcc 222
Query: 859 ccatcttcctcatcgtcccagtcctcaggcttcttagcatcagggtcaggaatttccttg 918
||||| |||||||||||||||||||| ||||| | || || | || ||||||||||
Sbjct: 221 ccatcctcctcatcgtcccagtcctctggctttgtggcgtctgaatctggaatttcctgc 162
Query: 919 ggaatatcatcatagccctctggcttcttgtcctcagggtcaggaatgtactccttgtca 978
||||| |||||||| ||||| ||||| ||||| || || ||||||||||| ||||||||
Sbjct: 161 ggaatgtcatcatatccctcaggctttttgtcttctggatcaggaatgtattccttgtct 102
Query: 979 tcccagtcctcaggctt 995
|||||||| || |||||
Sbjct: 101 tcccagtcttctggctt 85
>gb|CR393186.1|CR393186 CR393186 RN Pinus pinaster cDNA clone RN53F09, mRNA sequence
Length = 588
Score = 143 bits (72), Expect = 3e-032
Identities = 186/224 (83%)
Strand = Plus / Minus
Query: 727 ggatcatccttaaaatctgggttgtcaatcataggtgccttccatttaccctggtagttc 786
|||||||||||||||||||| ||||||||||| ||||| |||||| |||| ||| ||
Sbjct: 232 ggatcatccttaaaatctggattgtcaatcattggtgcaacccattttcccttgtacttt 173
Query: 787 gggttcttgattttcttttgtttccatggtcccttgtattctgggttgggaatggtaggg 846
|| ||||||||||||||| | ||||| ||||| ||||| ||||| || |||||||| ||
Sbjct: 172 ggattcttgattttctttggcttccagggtcctttgtactctggattcggaatggttgga 113
Query: 847 gcagtccattcaccatcttcctcatcgtcccagtcctcaggcttcttagcatcagggtca 906
|| |||| || ||||| |||||||||||||||||||| ||||| | ||||| | ||
Sbjct: 112 gctttccactccccatcctcctcatcgtcccagtcctctggctttgtggcatctgaatct 53
Query: 907 ggaatttccttgggaatatcatcatagccctctggcttcttgtc 950
|||||||||| ||||| |||||||| ||||| ||||| |||||
Sbjct: 52 ggaatttcctgcggaatgtcatcatatccctcaggctttttgtc 9
Score = 44.1 bits (22), Expect = 0.019
Identities = 43/50 (86%)
Strand = Plus / Minus
Query: 559 tcaaaagcagccttttctgcctccttgtgcttgccccaggtctcctctgc 608
|||||||| ||||||| || |||||||| || ||||| |||||||||||
Sbjct: 400 tcaaaagcttccttttcagcatccttgtgttttccccatgtctcctctgc 351
>gb|AI812952.1|AI812952 22G9 Pine Lambda Zap Xylem library Pinus taeda cDNA, mRNA sequence
Length = 514
Score = 141 bits (71), Expect = 1e-031
Identities = 213/259 (82%), Gaps = 1/259 (0%)
Strand = Plus / Minus
Query: 738 aaaatctgggttgtcaatcataggtgccttccatttaccctggtagttcgggttcttgat 797
||||||||| ||||||||||| ||||| |||||| |||| ||| || || ||||||||
Sbjct: 514 aaaatctggattgtcaatcattggtgcaacccattttcccttgtactttggattcttgat 455
Query: 798 tttcttttgtttccatggtcccttgtattctgggttgggaatggtaggggcagtcca-tt 856
||||||| | ||||| ||||| ||||| ||||| || |||||||| || || |||| |
Sbjct: 454 tttctttggcttccagggtcctttgtactctggattcggaatggttggagctttccactc 395
Query: 857 caccatcttcctcatcgtcccagtcctcaggcttcttagcatcagggtcaggaatttcct 916
| ||||| |||||||||||||||||||| ||||| | ||||| | || ||||||||||
Sbjct: 394 ccccatcctcctcatcgtcccagtcctctggctttgtggcatctgaatctggaatttcct 335
Query: 917 tgggaatatcatcatagccctctggcttcttgtcctcagggtcaggaatgtactccttgt 976
||||| |||||||| ||||| ||||| ||||| || || ||||||||||| |||||||
Sbjct: 334 gcggaatgtcatcatatccctcaggctttttgtcttctggatcaggaatgtattccttgt 275
Query: 977 catcccagtcctcaggctt 995
| |||||||| || |||||
Sbjct: 274 cttcccagtcttctggctt 256
Score = 65.9 bits (33), Expect = 5e-009
Identities = 78/93 (83%)
Strand = Plus / Minus
Query: 1074 attatcaatgagaatgctgtatgttgcatcaggacggatgatcaaagtgtaaacatgagt 1133
||||||||||||||||||||| || |||||||| || | || ||||| |||||||||||
Sbjct: 177 attatcaatgagaatgctgtaggtagcatcagggcgaagaatgaaagtataaacatgagt 118
Query: 1134 caactgatcagtctcacaaggcacatccttctt 1166
| |||||| || ||||| | |||||||||||
Sbjct: 117 aagctgatccgtttcacatgatacatccttctt 85
>gb|CO364857.1|CO364857 RTK1_22_E10.b1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_22_E10_A029 3', mRNA sequence
Length = 839
Score = 127 bits (64), Expect = 2e-027
Identities = 256/320 (80%)
Strand = Plus / Plus
Query: 1078 tcaatgagaatgctgtatgttgcatcaggacggatgatcaaagtgtaaacatgagtcaac 1137
|||||||| ||||| ||||| ||||| || || | || ||||| ||||||||||| | |
Sbjct: 272 tcaatgagtatgctatatgtagcatccggtcgaagaatgaaagtataaacatgagtaagc 331
Query: 1138 tgatcagtctcacaaggcacatccttcttgatcaagtggttcttgccatccttggtcagg 1197
||||| || |||||||| ||||| || ||||| |||||||| || | | | |||
Sbjct: 332 tgatctgtttcacaagggacatcttttttgataggatggttcttccctttatatgacaga 391
Query: 1198 atagtgtgaaccttcttggtgctgtacccacagatatctggtccaaacataatgctgtaa 1257
|| || ||||||||||| |||||||| || || || ||||||||||||||||| || |||
Sbjct: 392 atggtatgaaccttcttagtgctgtaaccgcaaatgtctggtccaaacataatactataa 451
Query: 1258 gatgtgtctccaccaaatttcttctggtctacatcaccacccagcaatttgacgtagcca 1317
| ||| ||||||| || ||||||||||| | ||||||| | ||| || |||||||||
Sbjct: 452 ggtgtctctccactgaaattcttctggtcaatttcaccacttaacaactttacgtagcca 511
Query: 1318 ccgccgcagtcaagcttctgctcgtgcttcacagagaactgcagcaccagggtcttatcc 1377
|| || || ||||| || || || ||||| ||||| ||||| || || ||||||||||||
Sbjct: 512 ccaccacaatcaagtttttgttcatgcttgacagaaaactgaagaacaagggtcttatcc 571
Query: 1378 ttgttgctgaactcagggta 1397
|||||||| |||||||||||
Sbjct: 572 ttgttgctaaactcagggta 591
Score = 99.6 bits (50), Expect = 4e-019
Identities = 170/210 (80%)
Strand = Plus / Plus
Query: 808 ttccatggtcccttgtattctgggttgggaatggtaggggcagtccattcaccatcttcc 867
||||| ||||| || |||||||| || | ||| || || || ||||| |||||||| |||
Sbjct: 2 ttccagggtcctttatattctggatttgcaatagttggagctgtccactcaccatcctcc 61
Query: 868 tcatcgtcccagtcctcaggcttcttagcatcagggtcaggaatttccttgggaatatca 927
|| || | ||| ||||| ||||| | ||||| || ||||| |||||||| ||||| |||
Sbjct: 62 tcgtcattccaatcctcgggcttagtggcatctggatcaggtatttcctttggaatgtca 121
Query: 928 tcatagccctctggcttcttgtcctcagggtcaggaatgtactccttgtcatcccagtcc 987
||||| ||||| || |||||||| || || |||||||| || ||||| |||||||| |||
Sbjct: 122 tcatatccctcaggtttcttgtcttctggatcaggaatatattccttatcatcccaatcc 181
Query: 988 tcaggcttcttagcctctgggtccttgatt 1017
|||||||| || || | ||||||||||||
Sbjct: 182 tcaggctttttggcattagggtccttgatt 211
>gb|CV036257.1|CV036257 RTNACL1_57_H03.g1_A029 Roots plus added NaCl Pinus taeda cDNA clone
RTNACL1_57_H03_A029 5', mRNA sequence
Length = 633
Score = 127 bits (64), Expect = 2e-027
Identities = 256/320 (80%)
Strand = Plus / Minus
Query: 1078 tcaatgagaatgctgtatgttgcatcaggacggatgatcaaagtgtaaacatgagtcaac 1137
|||||||| ||||| ||||| ||||| || || | || ||||| ||||||||||| | |
Sbjct: 557 tcaatgagtatgctatatgtagcatccggtcgaagaatgaaagtataaacatgagtaagc 498
Query: 1138 tgatcagtctcacaaggcacatccttcttgatcaagtggttcttgccatccttggtcagg 1197
||||| || |||||||| ||||| || ||||| |||||||| || | | | |||
Sbjct: 497 tgatctgtttcacaagggacatcttttttgataggatggttcttccctttatatgacaga 438
Query: 1198 atagtgtgaaccttcttggtgctgtacccacagatatctggtccaaacataatgctgtaa 1257
|| || ||||||||||| |||||||| || || || ||||||||||||||||| || |||
Sbjct: 437 atggtatgaaccttcttagtgctgtaaccgcaaatgtctggtccaaacataatactataa 378
Query: 1258 gatgtgtctccaccaaatttcttctggtctacatcaccacccagcaatttgacgtagcca 1317
| ||| ||||||| || ||||||||||| | ||||||| | ||| || |||||||||
Sbjct: 377 ggtgtctctccactgaaattcttctggtcaatttcaccacttaacaactttacgtagcca 318
Query: 1318 ccgccgcagtcaagcttctgctcgtgcttcacagagaactgcagcaccagggtcttatcc 1377
|| || || ||||| || || || ||||| ||||| ||||| || || ||||||||||||
Sbjct: 317 ccaccacaatcaagtttttgttcatgcttgacagaaaactgaagaacaagggtcttatcc 258
Query: 1378 ttgttgctgaactcagggta 1397
|||||||| |||||||||||
Sbjct: 257 ttgttgctaaactcagggta 238
>gb|AW043340.1|AW043340 ST32B12 Pine TriplEx shoot tip library Pinus taeda cDNA clone
ST32B12, mRNA sequence
Length = 600
Score = 123 bits (62), Expect = 3e-026
Identities = 161/194 (82%)
Strand = Plus / Minus
Query: 1204 tgaaccttcttggtgctgtacccacagatatctggtccaaacataatgctgtaagatgtg 1263
||||||||||| |||||||| || || || ||||||||||||||||| || |||| |||
Sbjct: 483 tgaaccttcttagtgctgtaaccgcaaatgtctggtccaaacataatactataaggtgtc 424
Query: 1264 tctccaccaaatttcttctggtctacatcaccacccagcaatttgacgtagccaccgccg 1323
||||||| || ||||||||||| | ||||||| | ||| || ||||||||||| ||
Sbjct: 423 tctccactgaaattcttctggtcaatttcaccacttaacaactttacgtagccaccacca 364
Query: 1324 cagtcaagcttctgctcgtgcttcacagagaactgcagcaccagggtcttatccttgttg 1383
|| ||||| || || || ||||| ||||| ||||| || || ||||||||||||||||||
Sbjct: 363 caatcaagtttttgttcatgcttgacagaaaactgaagaacaagggtcttatccttgttg 304
Query: 1384 ctgaactcagggta 1397
|| |||||||||||
Sbjct: 303 ctaaactcagggta 290
>gb|CF668421.1|CF668421 RTCNT1_36_H10.b1_A029 Root control Pinus taeda cDNA clone
RTCNT1_36_H10_A029 3', mRNA sequence
Length = 689
Score = 123 bits (62), Expect = 3e-026
Identities = 134/158 (84%)
Strand = Plus / Minus
Query: 727 ggatcatccttaaaatctgggttgtcaatcataggtgccttccatttaccctggtagttc 786
|||||||||||||||||||| ||||||||||| ||||| |||||| |||| ||| ||
Sbjct: 160 ggatcatccttaaaatctggattgtcaatcattggtgcaacccattttcccttgtacttt 101
Query: 787 gggttcttgattttcttttgtttccatggtcccttgtattctgggttgggaatggtaggg 846
|| ||||||||||||||| | ||||| ||||| ||||| ||||| || |||||||| ||
Sbjct: 100 ggattcttgattttctttggcttccagggtcctttgtactctggattcggaatggttgga 41
Query: 847 gcagtccattcaccatcttcctcatcgtcccagtcctc 884
|| |||| || ||||| ||||||||||||||||||||
Sbjct: 40 gctttccactccccatcctcctcatcgtcccagtcctc 3
Score = 44.1 bits (22), Expect = 0.019
Identities = 43/50 (86%)
Strand = Plus / Minus
Query: 559 tcaaaagcagccttttctgcctccttgtgcttgccccaggtctcctctgc 608
|||||||| ||||||| || |||||||| || ||||| |||||||||||
Sbjct: 328 tcaaaagcttccttttcagcatccttgtgttttccccatgtctcctctgc 279
>gb|CF670258.1|CF670258 RTCNT1_49_C06.b1_A029 Root control Pinus taeda cDNA clone
RTCNT1_49_C06_A029 3', mRNA sequence
Length = 701
Score = 123 bits (62), Expect = 3e-026
Identities = 134/158 (84%)
Strand = Plus / Minus
Query: 727 ggatcatccttaaaatctgggttgtcaatcataggtgccttccatttaccctggtagttc 786
|||||||||||||||||||| ||||||||||| ||||| |||||| |||| ||| ||
Sbjct: 158 ggatcatccttaaaatctggattgtcaatcattggtgcaacccattttcccttgtacttt 99
Query: 787 gggttcttgattttcttttgtttccatggtcccttgtattctgggttgggaatggtaggg 846
|| ||||||||||||||| | ||||| ||||| ||||| ||||| || |||||||| ||
Sbjct: 98 ggattcttgattttctttggcttccagggtcctttgtactctggattcggaatggttgga 39
Query: 847 gcagtccattcaccatcttcctcatcgtcccagtcctc 884
|| |||| || ||||| ||||||||||||||||||||
Sbjct: 38 gctttccactccccatcctcctcatcgtcccagtcctc 1
Score = 44.1 bits (22), Expect = 0.019
Identities = 43/50 (86%)
Strand = Plus / Minus
Query: 559 tcaaaagcagccttttctgcctccttgtgcttgccccaggtctcctctgc 608
|||||||| ||||||| || |||||||| || ||||| |||||||||||
Sbjct: 326 tcaaaagcttccttttcagcatccttgtgttttccccatgtctcctctgc 277
>gb|BG039134.1|BG039134 NXSI_095_C06_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_095_C06 5' similar to Arabidopsis thaliana
sequence At1g09210 putative calcium-binding protein,
calreticulin see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 279
Score = 119 bits (60), Expect = 4e-025
Identities = 174/212 (82%)
Strand = Plus / Minus
Query: 739 aaatctgggttgtcaatcataggtgccttccatttaccctggtagttcgggttcttgatt 798
|||||||| ||||||||||| ||||| |||||| |||| ||| || || |||||||||
Sbjct: 216 aaatctggattgtcaatcattggtgcaacccattttcccttgtactttggattcttgatt 157
Query: 799 ttcttttgtttccatggtcccttgtattctgggttgggaatggtaggggcagtccattca 858
|||||| | ||||| ||||| ||||| ||||| || |||||||| || || |||| ||
Sbjct: 156 ttctttggcttccagggtcctttgtactctggattcggaatggttggagctttccactcc 97
Query: 859 ccatcttcctcatcgtcccagtcctcaggcttcttagcatcagggtcaggaatttccttg 918
||||| |||||||||||||||||||| ||||| | ||||| | || ||||||||||
Sbjct: 96 ccatcctcctcatcgtcccagtcctctggctttgtggcatctgaatctggaatttcctgc 37
Query: 919 ggaatatcatcatagccctctggcttcttgtc 950
||||| |||||||| ||||| ||||| |||||
Sbjct: 36 ggaatgtcatcatatccctcaggctttttgtc 5
>gb|BM158719.1|BM158719 NXLV_039_C05_F NXLV (Nsf Xylem Late wood Vertical) Pinus taeda cDNA
clone NXLV_039_C05 5' similar to Arabidopsis thaliana
sequence At1g09210 putative calcium-binding protein,
calreticulin see
http://mips.gsf.de/proj/thal/db/index.html, mRNA sequence
Length = 524
Score = 119 bits (60), Expect = 4e-025
Identities = 255/320 (79%)
Strand = Plus / Minus
Query: 1078 tcaatgagaatgctgtatgttgcatcaggacggatgatcaaagtgtaaacatgagtcaac 1137
|||||||| ||||| ||||| ||||| || || | || ||||| ||||||||||| | |
Sbjct: 402 tcaatgaggatgctatatgtagcatccggtcgaagaatgaaagtataaacatgagtaagc 343
Query: 1138 tgatcagtctcacaaggcacatccttcttgatcaagtggttcttgccatccttggtcagg 1197
||||| || |||||||| ||||| || ||||| |||||||| || | | | |||
Sbjct: 342 tgatctgtttcacaagggacatcttttttgataggatggttcttccctttatatgacaga 283
Query: 1198 atagtgtgaaccttcttggtgctgtacccacagatatctggtccaaacataatgctgtaa 1257
|| || ||||||||||| |||||||| || || || ||||||||||||||||| || ||
Sbjct: 282 atggtatgaaccttcttagtgctgtaaccgcaaatgtctggtccaaacataatactatac 223
Query: 1258 gatgtgtctccaccaaatttcttctggtctacatcaccacccagcaatttgacgtagcca 1317
| ||| ||||||| || ||||||||||| | ||||||| | ||| || |||||||||
Sbjct: 222 ggtgtctctccactgaaattcttctggtcaatttcaccacttaacaactttacgtagcca 163
Query: 1318 ccgccgcagtcaagcttctgctcgtgcttcacagagaactgcagcaccagggtcttatcc 1377
|| || || ||||| || || || ||||| ||||| ||||| || || ||||||||||||
Sbjct: 162 ccaccacaatcaagtttttgttcatgcttgacagaaaactgaagaacaagggtcttatcc 103
Query: 1378 ttgttgctgaactcagggta 1397
|||||||| |||||||||||
Sbjct: 102 ttgttgctaaactcagggta 83
>gb|CF390177.1|CF390177 RTDR2_12_D12.g1_A021 Loblolly pine roots recovering from drought DR2
Pinus taeda cDNA clone RTDR2_12_D12_A021 5', mRNA
sequence
Length = 675
Score = 119 bits (60), Expect = 4e-025
Identities = 255/320 (79%)
Strand = Plus / Minus
Query: 1078 tcaatgagaatgctgtatgttgcatcaggacggatgatcaaagtgtaaacatgagtcaac 1137
|||||||| ||||| ||||| ||||| || || | || ||||| ||||||||||| | |
Sbjct: 553 tcaatgaggatgctatatgtagcatccggtcgaagaatgaaagtataaacatgagtaagc 494
Query: 1138 tgatcagtctcacaaggcacatccttcttgatcaagtggttcttgccatccttggtcagg 1197
||||| || |||||||| ||||| || ||||| |||||||| || | | | |||
Sbjct: 493 tgatctgtttcacaagggacatcttttttgataggatggttcttccctttatatgacaga 434
Query: 1198 atagtgtgaaccttcttggtgctgtacccacagatatctggtccaaacataatgctgtaa 1257
|| || ||||||||||| |||||||| || || || ||||||||||||||||| || ||
Sbjct: 433 atggtatgaaccttcttagtgctgtaaccgcaaatgtctggtccaaacataatactatac 374
Query: 1258 gatgtgtctccaccaaatttcttctggtctacatcaccacccagcaatttgacgtagcca 1317
| ||| ||||||| || ||||||||||| | ||||||| | ||| || |||||||||
Sbjct: 373 ggtgtctctccactgaaattcttctggtcaatttcaccacttaacaactttacgtagcca 314
Query: 1318 ccgccgcagtcaagcttctgctcgtgcttcacagagaactgcagcaccagggtcttatcc 1377
|| || || ||||| || || || ||||| ||||| ||||| || || ||||||||||||
Sbjct: 313 ccaccacaatcaagtttttgttcatgcttgacagaaaactgaagaacaagggtcttatcc 254
Query: 1378 ttgttgctgaactcagggta 1397
|||||||| |||||||||||
Sbjct: 253 ttgttgctaaactcagggta 234
Score = 48.1 bits (24), Expect = 0.001
Identities = 51/60 (85%)
Strand = Plus / Minus
Query: 958 tcaggaatgtactccttgtcatcccagtcctcaggcttcttagcctctgggtccttgatt 1017
|||||||| || ||||| |||||||| ||||||||||| || || | ||||||||||||
Sbjct: 673 tcaggaatatattccttatcatcccaatcctcaggctttttggcattagggtccttgatt 614
>gb|CF395464.1|CF395464 RTDS2_11_H06.g1_A021 Drought-stressed loblolly pine roots DS2 Pinus
taeda cDNA clone RTDS2_11_H06_A021 5', mRNA sequence
Length = 752
Score = 119 bits (60), Expect = 4e-025
Identities = 255/320 (79%)
Strand = Plus / Minus
Query: 1078 tcaatgagaatgctgtatgttgcatcaggacggatgatcaaagtgtaaacatgagtcaac 1137
|||||||| ||||| ||||| ||||| || || | || ||||| ||||||||||| | |
Sbjct: 455 tcaatgaggatgctatatgtagcatccggtcgaagaatgaaagtataaacatgagtaagc 396
Query: 1138 tgatcagtctcacaaggcacatccttcttgatcaagtggttcttgccatccttggtcagg 1197
||||| || |||||||| ||||| || ||||| |||||||| || | | | |||
Sbjct: 395 tgatctgtttcacaagggacatcttttttgataggatggttcttccctttatatgacaga 336
Query: 1198 atagtgtgaaccttcttggtgctgtacccacagatatctggtccaaacataatgctgtaa 1257
|| || ||||||||||| |||||||| || || || ||||||||||||||||| || ||
Sbjct: 335 atggtatgaaccttcttagtgctgtaaccgcaaatgtctggtccaaacataatactatac 276
Query: 1258 gatgtgtctccaccaaatttcttctggtctacatcaccacccagcaatttgacgtagcca 1317
| ||| ||||||| || ||||||||||| | ||||||| | ||| || |||||||||
Sbjct: 275 ggtgtctctccactgaaattcttctggtcaatttcaccacttaacaactttacgtagcca 216
Query: 1318 ccgccgcagtcaagcttctgctcgtgcttcacagagaactgcagcaccagggtcttatcc 1377
|| || || ||||| || || || ||||| ||||| ||||| || || ||||||||||||
Sbjct: 215 ccaccacaatcaagtttttgttcatgcttgacagaaaactgaagaacaagggtcttatcc 156
Query: 1378 ttgttgctgaactcagggta 1397
|||||||| |||||||||||
Sbjct: 155 ttgttgctaaactcagggta 136
Score = 105 bits (53), Expect = 6e-021
Identities = 191/237 (80%)
Strand = Plus / Minus
Query: 781 tagttcgggttcttgattttcttttgtttccatggtcccttgtattctgggttgggaatg 840
||||| || ||||| |||||||| | ||||| ||||| || |||||||| || | |||
Sbjct: 752 tagttaggattcttaattttcttaggcttccagggtcctttatattctggatttgcaata 693
Query: 841 gtaggggcagtccattcaccatcttcctcatcgtcccagtcctcaggcttcttagcatca 900
|| || || ||||| |||||||| ||||| || | ||| ||||| ||||| | |||||
Sbjct: 692 gttggagctgtccactcaccatcctcctcgtcattccaatcctcgggcttagtggcatct 633
Query: 901 gggtcaggaatttccttgggaatatcatcatagccctctggcttcttgtcctcagggtca 960
|| ||||| |||||||| ||||| |||||||| ||||| || |||||||| || || |||
Sbjct: 632 ggatcaggtatttcctttggaatgtcatcatatccctcaggtttcttgtcttctggatca 573
Query: 961 ggaatgtactccttgtcatcccagtcctcaggcttcttagcctctgggtccttgatt 1017
||||| || ||||| |||||||| ||||||||||| || || | ||||||||||||
Sbjct: 572 ggaatatattccttatcatcccaatcctcaggctttttggcattagggtccttgatt 516
>gb|CO366328.1|CO366328 RTK1_27_E11.b1_A029 Roots minus potassium Pinus taeda cDNA clone
RTK1_27_E11_A029 3', mRNA sequence
Length = 767
Score = 119 bits (60), Expect = 4e-025
Identities = 255/320 (79%)
Strand = Plus / Plus
Query: 1078 tcaatgagaatgctgtatgttgcatcaggacggatgatcaaagtgtaaacatgagtcaac 1137
|||||||| ||||| ||||| ||||| || || | || ||||| ||||||||||| | |
Sbjct: 195 tcaatgaggatgctatatgtagcatccggtcgaagaatgaaagtataaacatgagtaagc 254
Query: 1138 tgatcagtctcacaaggcacatccttcttgatcaagtggttcttgccatccttggtcagg 1197
||||| || |||||||| ||||| || ||||| |||||||| || | | | |||
Sbjct: 255 tgatctgtttcacaagggacatcttttttgataggatggttcttccctttatatgacaga 314
Query: 1198 atagtgtgaaccttcttggtgctgtacccacagatatctggtccaaacataatgctgtaa 1257
|| || ||||||||||| |||||||| || || || ||||||||||||||||| || ||
Sbjct: 315 atggtatgaaccttcttagtgctgtaaccgcaaatgtctggtccaaacataatactatac 374
Query: 1258 gatgtgtctccaccaaatttcttctggtctacatcaccacccagcaatttgacgtagcca 1317
| ||| ||||||| || ||||||||||| | ||||||| | ||| || |||||||||
Sbjct: 375 ggtgtctctccactgaaattcttctggtcaatttcaccacttaacaactttacgtagcca 434
Query: 1318 ccgccgcagtcaagcttctgctcgtgcttcacagagaactgcagcaccagggtcttatcc 1377
|| || || ||||| || || || ||||| ||||| ||||| || || ||||||||||||
Sbjct: 435 ccaccacaatcaagtttttgttcatgcttgacagaaaactgaagaacaagggtcttatcc 494
Query: 1378 ttgttgctgaactcagggta 1397
|||||||| |||||||||||
Sbjct: 495 ttgttgctaaactcagggta 514
Score = 85.7 bits (43), Expect = 6e-015
Identities = 103/123 (83%)
Strand = Plus / Plus
Query: 895 gcatcagggtcaggaatttccttgggaatatcatcatagccctctggcttcttgtcctca 954
||||| || ||||| |||||||| ||||| |||||||| ||||| || |||||||| ||
Sbjct: 12 gcatctggatcaggtatttcctttggaatgtcatcatatccctcaggtttcttgtcttct 71
Query: 955 gggtcaggaatgtactccttgtcatcccagtcctcaggcttcttagcctctgggtccttg 1014
|| |||||||| || ||||| |||||||| ||||||||||| || || | |||||||||
Sbjct: 72 ggatcaggaatatattccttatcatcccaatcctcaggctttttggcattagggtccttg 131
Query: 1015 att 1017
|||
Sbjct: 132 att 134
>gb|DR012497.1|DR012497 HEAT1_13_E12.b1_A029 Root at 37 C for 24 hr Pinus taeda cDNA clone
HEAT1_13_E12_A029 3', mRNA sequence
Length = 855
Score = 119 bits (60), Expect = 4e-025
Identities = 255/320 (79%)
Strand = Plus / Plus
Query: 1078 tcaatgagaatgctgtatgttgcatcaggacggatgatcaaagtgtaaacatgagtcaac 1137
|||||||| ||||| ||||| ||||| || || | || ||||| ||||||||||| | |
Sbjct: 278 tcaatgaggatgctatatgtagcatccggtcgaagaatgaaagtataaacatgagtaagc 337
Query: 1138 tgatcagtctcacaaggcacatccttcttgatcaagtggttcttgccatccttggtcagg 1197
||||| || |||||||| ||||| || ||||| |||||||| || | | | |||
Sbjct: 338 tgatctgtttcacaagggacatcttttttgataggatggttcttccctttatatgacaga 397
Query: 1198 atagtgtgaaccttcttggtgctgtacccacagatatctggtccaaacataatgctgtaa 1257
|| || ||||||||||| |||||||| || || || ||||||||||||||||| || ||
Sbjct: 398 atggtatgaaccttcttagtgctgtaaccgcaaatgtctggtccaaacataatactatac 457
Query: 1258 gatgtgtctccaccaaatttcttctggtctacatcaccacccagcaatttgacgtagcca 1317
| ||| ||||||| || ||||||||||| | ||||||| | ||| || |||||||||
Sbjct: 458 ggtgtctctccactgaaattcttctggtcaatttcaccacttaacaactttacgtagcca 517
Query: 1318 ccgccgcagtcaagcttctgctcgtgcttcacagagaactgcagcaccagggtcttatcc 1377
|| || || ||||| || || || ||||| ||||| ||||| || || ||||||||||||
Sbjct: 518 ccaccacaatcaagtttttgttcatgcttgacagaaaactgaagaacaagggtcttatcc 577
Query: 1378 ttgttgctgaactcagggta 1397
|||||||| |||||||||||
Sbjct: 578 ttgttgctaaactcagggta 597
Score = 99.6 bits (50), Expect = 4e-019
Identities = 170/210 (80%)
Strand = Plus / Plus
Query: 808 ttccatggtcccttgtattctgggttgggaatggtaggggcagtccattcaccatcttcc 867
||||| ||||| || |||||||| || | ||| || || || ||||| |||||||| |||
Sbjct: 8 ttccagggtcctttatattctggatttgcaatagttggagctgtccactcaccatcctcc 67
Query: 868 tcatcgtcccagtcctcaggcttcttagcatcagggtcaggaatttccttgggaatatca 927
|| || | ||| ||||| ||||| | ||||| || ||||| |||||||| ||||| |||
Sbjct: 68 tcgtcattccaatcctcgggcttagtggcatctggatcaggtatttcctttggaatgtca 127
Query: 928 tcatagccctctggcttcttgtcctcagggtcaggaatgtactccttgtcatcccagtcc 987
||||| ||||| || |||||||| || || |||||||| || ||||| |||||||| |||
Sbjct: 128 tcatatccctcaggtttcttgtcttctggatcaggaatatattccttatcatcccaatcc 187
Query: 988 tcaggcttcttagcctctgggtccttgatt 1017
|||||||| || || | ||||||||||||
Sbjct: 188 tcaggctttttggcattagggtccttgatt 217
>gb|DR682232.1|DR682232 EST1072307 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAA847 3' end, mRNA sequence
Length = 725
Score = 119 bits (60), Expect = 4e-025
Identities = 255/320 (79%)
Strand = Plus / Minus
Query: 1078 tcaatgagaatgctgtatgttgcatcaggacggatgatcaaagtgtaaacatgagtcaac 1137
|||||||| ||||| ||||| ||||| || || | || ||||| ||||||||||| | |
Sbjct: 598 tcaatgaggatgctatatgtagcatccggtcgaagaatgaaagtataaacatgagtaagc 539
Query: 1138 tgatcagtctcacaaggcacatccttcttgatcaagtggttcttgccatccttggtcagg 1197
||||| || |||||||| ||||| || ||||| |||||||| || | | | |||
Sbjct: 538 tgatctgtttcacaagggacatcttttttgataggatggttcttccctttatatgacaga 479
Query: 1198 atagtgtgaaccttcttggtgctgtacccacagatatctggtccaaacataatgctgtaa 1257
|| || ||||||||||| |||||||| || || || ||||||||||||||||| || ||
Sbjct: 478 atggtatgaaccttcttagtgctgtaaccgcaaatgtctggtccaaacataatactatac 419
Query: 1258 gatgtgtctccaccaaatttcttctggtctacatcaccacccagcaatttgacgtagcca 1317
| ||| ||||||| || ||||||||||| | ||||||| | ||| || |||||||||
Sbjct: 418 ggtgtctctccactgaaattcttctggtcaatttcaccacttaacaactttacgtagcca 359
Query: 1318 ccgccgcagtcaagcttctgctcgtgcttcacagagaactgcagcaccagggtcttatcc 1377
||||| || ||||| || || || ||||| ||||| ||||| || || |||||||||||
Sbjct: 358 ccgccacaatcaagtttttgttcatgcttgacagaaaactgaagaacaggggtcttatcc 299
Query: 1378 ttgttgctgaactcagggta 1397
|||||||| |||||||||||
Sbjct: 298 ttgttgctaaactcagggta 279
Score = 48.1 bits (24), Expect = 0.001
Identities = 51/60 (85%)
Strand = Plus / Minus
Query: 958 tcaggaatgtactccttgtcatcccagtcctcaggcttcttagcctctgggtccttgatt 1017
|||||||| || ||||| |||||||| ||||||||||| || || | ||||||||||||
Sbjct: 718 tcaggaatatattccttatcatcccaatcctcaggctttttggcattagggtccttgatt 659
>gb|DT630835.1|DT630835 EST1145766 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMF110 3' end, mRNA sequence
Length = 828
Score = 119 bits (60), Expect = 4e-025
Identities = 255/320 (79%)
Strand = Plus / Minus
Query: 1078 tcaatgagaatgctgtatgttgcatcaggacggatgatcaaagtgtaaacatgagtcaac 1137
|||||||| ||||| ||||| ||||| || || | || ||||| ||||||||||| | |
Sbjct: 606 tcaatgaggatgctatatgtagcatccggtcgaagaatgaaagtataaacatgagtaagc 547
Query: 1138 tgatcagtctcacaaggcacatccttcttgatcaagtggttcttgccatccttggtcagg 1197
||||| || |||||||| ||||| || ||||| |||||||| || | | | |||
Sbjct: 546 tgatctgtttcacaagggacatcttttttgataggatggttcttccctttatatgacaga 487
Query: 1198 atagtgtgaaccttcttggtgctgtacccacagatatctggtccaaacataatgctgtaa 1257
|| || ||||||||||| |||||||| || || || ||||||||||||||||| || ||
Sbjct: 486 atggtatgaaccttcttagtgctgtaaccgcaaatgtctggtccaaacataatactatac 427
Query: 1258 gatgtgtctccaccaaatttcttctggtctacatcaccacccagcaatttgacgtagcca 1317
| ||| ||||||| || ||||||||||| | ||||||| | ||| || |||||||||
Sbjct: 426 ggtgtctctccactgaaattcttctggtcaatttcaccacttaacaactttacgtagcca 367
Query: 1318 ccgccgcagtcaagcttctgctcgtgcttcacagagaactgcagcaccagggtcttatcc 1377
||||| || ||||| || || || ||||| ||||| ||||| || || |||||||||||
Sbjct: 366 ccgccacaatcaagtttttgttcatgcttgacagaaaactgaagaacaggggtcttatcc 307
Query: 1378 ttgttgctgaactcagggta 1397
|||||||| |||||||||||
Sbjct: 306 ttgttgctaaactcagggta 287
Score = 77.8 bits (39), Expect = 1e-012
Identities = 102/123 (82%)
Strand = Plus / Minus
Query: 895 gcatcagggtcaggaatttccttgggaatatcatcatagccctctggcttcttgtcctca 954
||||| || ||||| |||||||| ||||| |||||||| ||| | || |||||||| ||
Sbjct: 789 gcatctggatcaggtatttcctttggaatgtcatcatatcccacaggtttcttgtcttct 730
Query: 955 gggtcaggaatgtactccttgtcatcccagtcctcaggcttcttagcctctgggtccttg 1014
|| |||||||| || ||||| |||||||| ||||||||||| || || | |||||||||
Sbjct: 729 ggatcaggaatatattccttatcatcccaatcctcaggctttttggcattagggtccttg 670
Query: 1015 att 1017
|||
Sbjct: 669 att 667
>gb|AW043146.1|AW043146 ST29H08 Pine TriplEx shoot tip library Pinus taeda cDNA clone
ST29H08, mRNA sequence
Length = 601
Score = 117 bits (59), Expect = 2e-024
Identities = 158/191 (82%)
Strand = Plus / Minus
Query: 1207 accttcttggtgctgtacccacagatatctggtccaaacataatgctgtaagatgtgtct 1266
|||||||| |||||||| || || || ||||||||||||||||| || |||| ||| |||
Sbjct: 480 accttcttagtgctgtaaccgcaaatgtctggtccaaacataatactataaggtgtctct 421
Query: 1267 ccaccaaatttcttctggtctacatcaccacccagcaatttgacgtagccaccgccgcag 1326
|||| || ||||||||||| | ||||||| | ||| || ||||||||||| || ||
Sbjct: 420 ccactgaaattcttctggtcaatttcaccacttaacaactttacgtagccaccaccacaa 361
Query: 1327 tcaagcttctgctcgtgcttcacagagaactgcagcaccagggtcttatccttgttgctg 1386
||||| || || || ||||| ||||| ||||| || || ||||||||||||||||||||
Sbjct: 360 tcaagtttttgttcatgcttgacagaaaactgaagaacaagggtcttatccttgttgcta 301
Query: 1387 aactcagggta 1397
|||||||||||
Sbjct: 300 aactcagggta 290
>gb|CX647947.1|CX647947 COLD1_25_C01.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_25_C01_A029 5', mRNA sequence
Length = 845
Score = 117 bits (59), Expect = 2e-024
Identities = 170/207 (82%)
Strand = Plus / Plus
Query: 726 tggatcatccttaaaatctgggttgtcaatcataggtgccttccatttaccctggtagtt 785
|||||||||||| ||||| || ||||||||||| || |||||||||||||||| ||||||
Sbjct: 635 tggatcatccttgaaatcaggattgtcaatcattggagccttccatttacccttgtagtt 694
Query: 786 cgggttcttgattttcttttgtttccatggtcccttgtattctgggttgggaatggtagg 845
|| ||||| |||||||| | ||||| ||||| || |||||||| || | ||| || ||
Sbjct: 695 aggattcttaattttcttaggcttccagggtcctttatattctggatttgcaatagttgg 754
Query: 846 ggcagtccattcaccatcttcctcatcgtcccagtcctcaggcttcttagcatcagggtc 905
|| ||||| |||||||| ||||| || | ||| ||||| ||||| | ||||| || ||
Sbjct: 755 agctgtccactcaccatcctcctcgtcattccaatcctcgggcttagtggcatctggatc 814
Query: 906 aggaatttccttgggaatatcatcata 932
||| |||||||| ||||| ||||||||
Sbjct: 815 aggtatttcctttggaatgtcatcata 841
Score = 56.0 bits (28), Expect = 5e-006
Identities = 67/80 (83%)
Strand = Plus / Plus
Query: 529 tcctcttcttccttctttttctcggcctcatcaaaagcagccttttctgcctccttgtgc 588
||||| ||||| ||||||||||| ||||| ||||| || ||||||| || ||||||||
Sbjct: 438 tcctcctcttctttctttttctctgcctcgtcaaaggcttccttttcggcatccttgtgt 497
Query: 589 ttgccccaggtctcctctgc 608
||| |||| || ||||||||
Sbjct: 498 ttggcccatgtttcctctgc 517
>gb|CO175084.1|CO175084 NDL1_48_F11.b1_A029 Needles control Pinus taeda cDNA clone
NDL1_48_F11_A029 3', mRNA sequence
Length = 570
Score = 115 bits (58), Expect = 6e-024
Identities = 160/194 (82%)
Strand = Plus / Minus
Query: 1204 tgaaccttcttggtgctgtacccacagatatctggtccaaacataatgctgtaagatgtg 1263
|||||||| || |||||||| || || || ||||||||||||||||| || |||| |||
Sbjct: 359 tgaacctttttagtgctgtaaccgcaaatgtctggtccaaacataatactataaggtgtc 300
Query: 1264 tctccaccaaatttcttctggtctacatcaccacccagcaatttgacgtagccaccgccg 1323
||||||| || ||||||||||| | ||||||| | ||| || ||||||||||| ||
Sbjct: 299 tctccactgaaattcttctggtcaatttcaccacttaacaactttacgtagccaccacca 240
Query: 1324 cagtcaagcttctgctcgtgcttcacagagaactgcagcaccagggtcttatccttgttg 1383
|| ||||| || || || ||||| ||||| ||||| || || ||||||||||||||||||
Sbjct: 239 caatcaagtttttgttcatgcttgacagaaaactgaagaacaagggtcttatccttgttg 180
Query: 1384 ctgaactcagggta 1397
|| |||||||||||
Sbjct: 179 ctaaactcagggta 166
>gb|CX647874.1|CX647874 COLD1_25_C01.b1_A029 Root cold Pinus taeda cDNA clone
COLD1_25_C01_A029 3', mRNA sequence
Length = 851
Score = 115 bits (58), Expect = 6e-024
Identities = 160/194 (82%)
Strand = Plus / Plus
Query: 1204 tgaaccttcttggtgctgtacccacagatatctggtccaaacataatgctgtaagatgtg 1263
|||||||| || |||||||| || || || ||||||||||||||||| || |||| |||
Sbjct: 403 tgaacctttttagtgctgtaaccgcaaatgtctggtccaaacataatactataaggtgtc 462
Query: 1264 tctccaccaaatttcttctggtctacatcaccacccagcaatttgacgtagccaccgccg 1323
||||||| || ||||||||||| | ||||||| | ||| || ||||||||||| ||
Sbjct: 463 tctccactgaaattcttctggtcaatttcaccacttaacaactttacgtagccaccacca 522
Query: 1324 cagtcaagcttctgctcgtgcttcacagagaactgcagcaccagggtcttatccttgttg 1383
|| ||||| || || || ||||| ||||| ||||| || || ||||||||||||||||||
Sbjct: 523 caatcaagtttttgttcatgcttgacagaaaactgaagaacaagggtcttatccttgttg 582
Query: 1384 ctgaactcagggta 1397
|| |||||||||||
Sbjct: 583 ctaaactcagggta 596
Score = 99.6 bits (50), Expect = 4e-019
Identities = 170/210 (80%)
Strand = Plus / Plus
Query: 808 ttccatggtcccttgtattctgggttgggaatggtaggggcagtccattcaccatcttcc 867
||||| ||||| || |||||||| || | ||| || || || ||||| |||||||| |||
Sbjct: 7 ttccagggtcctttatattctggatttgcaatagttggagctgtccactcaccatcctcc 66
Query: 868 tcatcgtcccagtcctcaggcttcttagcatcagggtcaggaatttccttgggaatatca 927
|| || | ||| ||||| ||||| | ||||| || ||||| |||||||| ||||| |||
Sbjct: 67 tcgtcattccaatcctcgggcttagtggcatctggatcaggtatttcctttggaatgtca 126
Query: 928 tcatagccctctggcttcttgtcctcagggtcaggaatgtactccttgtcatcccagtcc 987
||||| ||||| || |||||||| || || |||||||| || ||||| |||||||| |||
Sbjct: 127 tcatatccctcaggtttcttgtcttctggatcaggaatatattccttatcatcccaatcc 186
Query: 988 tcaggcttcttagcctctgggtccttgatt 1017
|||||||| || || | ||||||||||||
Sbjct: 187 tcaggctttttggcattagggtccttgatt 216
>gb|DR091630.1|DR091630 RTAL1_22_H09.g1_A029 Roots plus added aluminum Pinus taeda cDNA clone
RTAL1_22_H09_A029 5', mRNA sequence
Length = 762
Score = 115 bits (58), Expect = 6e-024
Identities = 160/194 (82%)
Strand = Plus / Minus
Query: 1204 tgaaccttcttggtgctgtacccacagatatctggtccaaacataatgctgtaagatgtg 1263
|||||||| || |||||||| || || || ||||||||||||||||| || |||| |||
Sbjct: 441 tgaacctttttagtgctgtaaccgcaaatgtctggtccaaacataatactataaggtgtc 382
Query: 1264 tctccaccaaatttcttctggtctacatcaccacccagcaatttgacgtagccaccgccg 1323
||||||| || ||||||||||| | ||||||| | ||| || ||||||||||| ||
Sbjct: 381 tctccactgaaattcttctggtcaatttcaccacttaacaactttacgtagccaccacca 322
Query: 1324 cagtcaagcttctgctcgtgcttcacagagaactgcagcaccagggtcttatccttgttg 1383
|| ||||| || || || ||||| ||||| ||||| || || ||||||||||||||||||
Sbjct: 321 caatcaagtttttgttcatgcttgacagaaaactgaagaacaagggtcttatccttgttg 262
Query: 1384 ctgaactcagggta 1397
|| |||||||||||
Sbjct: 261 ctaaactcagggta 248
Score = 85.7 bits (43), Expect = 6e-015
Identities = 103/123 (83%)
Strand = Plus / Minus
Query: 895 gcatcagggtcaggaatttccttgggaatatcatcatagccctctggcttcttgtcctca 954
||||| || ||||| |||||||| ||||| |||||||| ||||| || |||||||| ||
Sbjct: 749 gcatctggatcaggtatttcctttggaatgtcatcatatccctcaggtttcttgtcttct 690
Query: 955 gggtcaggaatgtactccttgtcatcccagtcctcaggcttcttagcctctgggtccttg 1014
|| |||||||| || ||||| |||||||| ||||||||||| || || | |||||||||
Sbjct: 689 ggatcaggaatatattccttatcatcccaatcctcaggctttttggcattagggtccttg 630
Query: 1015 att 1017
|||
Sbjct: 629 att 627
>gb|BE662302.1|BE662302 ST84/ST84D02 Pine TriplEx shoot tip library Pinus taeda cDNA clone
ST84/ST84D02, mRNA sequence
Length = 421
Score = 107 bits (54), Expect = 2e-021
Identities = 162/198 (81%)
Strand = Plus / Minus
Query: 726 tggatcatccttaaaatctgggttgtcaatcataggtgccttccatttaccctggtagtt 785
|||||||||||| ||||| || ||||||||||| || |||||||||||||||| ||||||
Sbjct: 201 tggatcatccttgaaatcaggattgtcaatcattggagccttccatttacccttgtagtt 142
Query: 786 cgggttcttgattttcttttgtttccatggtcccttgtattctgggttgggaatggtagg 845
|| ||||| |||||||| | ||||| ||||| || |||||||| || | ||| || ||
Sbjct: 141 aggattcttaattttcttaggcttccagggtcctttatattctggatttgcaatagttgg 82
Query: 846 ggcagtccattcaccatcttcctcatcgtcccagtcctcaggcttcttagcatcagggtc 905
|| ||||| |||||||| ||||| || | ||| ||||| ||||| | ||||| || ||
Sbjct: 81 agctgtccactcaccatcctcctcgtcattccaatcctcgggcttagtggcatctggatc 22
Query: 906 aggaatttccttgggaat 923
||| |||||||| |||||
Sbjct: 21 aggtatttcctttggaat 4
>gb|BX254774.1|BX254774 BX254774 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP104C10, mRNA sequence
Length = 672
Score = 107 bits (54), Expect = 2e-021
Identities = 159/194 (81%)
Strand = Plus / Minus
Query: 1204 tgaaccttcttggtgctgtacccacagatatctggtccaaacataatgctgtaagatgtg 1263
||||||||||| |||||||| || || || ||||||||||||||||| || |||| |||
Sbjct: 455 tgaaccttcttagtgctgtaaccgcaaatgtctggtccaaacataatactataaggtgtc 396
Query: 1264 tctccaccaaatttcttctggtctacatcaccacccagcaatttgacgtagccaccgccg 1323
||||||| || ||||||||||| || ||||||| | ||| || || |||||||| ||
Sbjct: 395 tctccactgaaattcttctggtcaacttcaccacttaacaactttacatagccaccacca 336
Query: 1324 cagtcaagcttctgctcgtgcttcacagagaactgcagcaccagggtcttatccttgttg 1383
|| ||||| || || || ||||| ||||| ||||| || || ||||| ||||||||||||
Sbjct: 335 caatcaagtttttgttcatgcttgacagaaaactgaagaacaagggttttatccttgttg 276
Query: 1384 ctgaactcagggta 1397
|| || ||||||||
Sbjct: 275 ctaaattcagggta 262
>gb|CO175151.1|CO175151 NDL1_48_F11.g1_A029 Needles control Pinus taeda cDNA clone
NDL1_48_F11_A029 5', mRNA sequence
Length = 651
Score = 107 bits (54), Expect = 2e-021
Identities = 159/194 (81%)
Strand = Plus / Minus
Query: 1204 tgaaccttcttggtgctgtacccacagatatctggtccaaacataatgctgtaagatgtg 1263
|||||||| || |||||||| || || || ||||||||||||||||| || |||| |||
Sbjct: 434 tgaacctttttagtgctgtaaccgcaaatgtctggtccaaacataatactataaggtgtc 375
Query: 1264 tctccaccaaatttcttctggtctacatcaccacccagcaatttgacgtagccaccgccg 1323
||||||| || ||||||||||| | ||||||| | ||| || | ||||||||| ||
Sbjct: 374 tctccactgaaattcttctggtcaatttcaccacttaacaactttaagtagccaccacca 315
Query: 1324 cagtcaagcttctgctcgtgcttcacagagaactgcagcaccagggtcttatccttgttg 1383
|| ||||| || || || ||||| ||||| ||||| || || ||||||||||||||||||
Sbjct: 314 caatcaagtttttgttcatgcttgacagaaaactgaagaacaagggtcttatccttgttg 255
Query: 1384 ctgaactcagggta 1397
|| |||||||||||
Sbjct: 254 ctaaactcagggta 241
>gb|CF473090.1|CF473090 RTDS1_1_D04.g1_A015 Drought-stressed loblolly pine roots DS1 Pinus
taeda cDNA clone RTDS1_1_D04_A015 5', mRNA sequence
Length = 695
Score = 103 bits (52), Expect = 2e-020
Identities = 148/180 (82%)
Strand = Plus / Minus
Query: 1204 tgaaccttcttggtgctgtacccacagatatctggtccaaacataatgctgtaagatgtg 1263
||||||||||| || || || ||||| || ||||| |||||||| || ||||||| |||
Sbjct: 480 tgaaccttctttgtactataaccacatatgtctggaccaaacatgatactgtaaggtgta 421
Query: 1264 tctccaccaaatttcttctggtctacatcaccacccagcaatttgacgtagccaccgccg 1323
||||||||||| ||||| ||||| |||||||||| || | || || || ||||| |||
Sbjct: 420 tctccaccaaacttcttttggtcaacatcaccactcaatagcttcacatatccaccaccg 361
Query: 1324 cagtcaagcttctgctcgtgcttcacagagaactgcagcaccagggtcttatccttgttg 1383
|||||||| |||||||| ||||| ||||| || || || || || |||||||||||||||
Sbjct: 360 cagtcaagtttctgctcatgcttgacagaaaattgaagaacaagtgtcttatccttgttg 301
Score = 65.9 bits (33), Expect = 5e-009
Identities = 78/93 (83%)
Strand = Plus / Minus
Query: 1074 attatcaatgagaatgctgtatgttgcatcaggacggatgatcaaagtgtaaacatgagt 1133
||||||||||||||||||||| || |||||||| || | || ||||| |||||||||||
Sbjct: 610 attatcaatgagaatgctgtaggtagcatcagggcgaagaatgaaagtataaacatgagt 551
Query: 1134 caactgatcagtctcacaaggcacatccttctt 1166
| |||||| || ||||| | |||||||||||
Sbjct: 550 aagctgatccgtttcacatgatacatccttctt 518
Score = 40.1 bits (20), Expect = 0.30
Identities = 41/48 (85%)
Strand = Plus / Minus
Query: 1506 ctcatccttcttccactcggacttgacccaccgactttcccagccatc 1553
||||||||||||||| ||||| | ||||| ||| ||||||| |||||
Sbjct: 178 ctcatccttcttccaatcggatatcacccaacgattttcccatccatc 131
>gb|CO200932.1|CO200932 RTCNT2_2_B11.g1_A029 Root control 2 (late) Pinus taeda cDNA clone
RTCNT2_2_B11_A029 5', mRNA sequence
Length = 479
Score = 103 bits (52), Expect = 2e-020
Identities = 148/180 (82%)
Strand = Plus / Minus
Query: 1204 tgaaccttcttggtgctgtacccacagatatctggtccaaacataatgctgtaagatgtg 1263
||||||||||| || || || ||||| || ||||| |||||||| || ||||||| |||
Sbjct: 412 tgaaccttctttgtactataaccacatatgtctggaccaaacatgatactgtaaggtgta 353
Query: 1264 tctccaccaaatttcttctggtctacatcaccacccagcaatttgacgtagccaccgccg 1323
||||||||||| ||||| ||||| |||||||||| || | || || || ||||| |||
Sbjct: 352 tctccaccaaacttcttttggtcaacatcaccactcaatagcttcacatatccaccaccg 293
Query: 1324 cagtcaagcttctgctcgtgcttcacagagaactgcagcaccagggtcttatccttgttg 1383
|||||||| |||||||| ||||| ||||| || || || || || |||||||||||||||
Sbjct: 292 cagtcaagtttctgctcatgcttgacagaaaattgaagaacaagtgtcttatccttgttg 233
Score = 40.1 bits (20), Expect = 0.30
Identities = 41/48 (85%)
Strand = Plus / Minus
Query: 1506 ctcatccttcttccactcggacttgacccaccgactttcccagccatc 1553
||||||||||||||| ||||| | ||||| ||| ||||||| |||||
Sbjct: 110 ctcatccttcttccaatcggatatcacccaacgattttcccatccatc 63
>gb|CV034720.1|CV034720 RTNACL1_11_D05.b1_A029 Roots plus added NaCl Pinus taeda cDNA clone
RTNACL1_11_D05_A029 3', mRNA sequence
Length = 677
Score = 103 bits (52), Expect = 2e-020
Identities = 148/180 (82%)
Strand = Plus / Plus
Query: 1204 tgaaccttcttggtgctgtacccacagatatctggtccaaacataatgctgtaagatgtg 1263
||||||||||| || || || ||||| || ||||| |||||||| || ||||||| |||
Sbjct: 228 tgaaccttctttgtactataaccacatatgtctggaccaaacatgatactgtaaggtgta 287
Query: 1264 tctccaccaaatttcttctggtctacatcaccacccagcaatttgacgtagccaccgccg 1323
||||||||||| ||||| ||||| |||||||||| || | || || || ||||| |||
Sbjct: 288 tctccaccaaacttcttttggtcaacatcaccactcaatagcttcacatatccaccaccg 347
Query: 1324 cagtcaagcttctgctcgtgcttcacagagaactgcagcaccagggtcttatccttgttg 1383
|||||||| |||||||| ||||| ||||| || || || || || |||||||||||||||
Sbjct: 348 cagtcaagtttctgctcatgcttgacagaaaattgaagaacaagtgtcttatccttgttg 407
Score = 65.9 bits (33), Expect = 5e-009
Identities = 78/93 (83%)
Strand = Plus / Plus
Query: 1074 attatcaatgagaatgctgtatgttgcatcaggacggatgatcaaagtgtaaacatgagt 1133
||||||||||||||||||||| || |||||||| || | || ||||| |||||||||||
Sbjct: 98 attatcaatgagaatgctgtaggtagcatcagggcgaagaatgaaagtataaacatgagt 157
Query: 1134 caactgatcagtctcacaaggcacatccttctt 1166
| |||||| || ||||| | |||||||||||
Sbjct: 158 aagctgatccgtttcacatgatacatccttctt 190
Score = 40.1 bits (20), Expect = 0.30
Identities = 41/48 (85%)
Strand = Plus / Plus
Query: 1506 ctcatccttcttccactcggacttgacccaccgactttcccagccatc 1553
||||||||||||||| ||||| | ||||| ||| ||||||| |||||
Sbjct: 530 ctcatccttcttccaatcggatatcacccaacgattttcccatccatc 577
>gb|DR092172.1|DR092172 RTAL1_27_C09.b1_A029 Roots plus added aluminum Pinus taeda cDNA clone
RTAL1_27_C09_A029 3', mRNA sequence
Length = 634
Score = 103 bits (52), Expect = 2e-020
Identities = 148/180 (82%)
Strand = Plus / Plus
Query: 1204 tgaaccttcttggtgctgtacccacagatatctggtccaaacataatgctgtaagatgtg 1263
||||||||||| || || || ||||| || ||||| |||||||| || ||||||| |||
Sbjct: 215 tgaaccttctttgtactataaccacatatgtctggaccaaacatgatactgtaaggtgta 274
Query: 1264 tctccaccaaatttcttctggtctacatcaccacccagcaatttgacgtagccaccgccg 1323
||||||||||| ||||| ||||| |||||||||| || | || || || ||||| |||
Sbjct: 275 tctccaccaaacttcttttggtcaacatcaccactcaatagcttcacatatccaccaccg 334
Query: 1324 cagtcaagcttctgctcgtgcttcacagagaactgcagcaccagggtcttatccttgttg 1383
|||||||| |||||||| ||||| ||||| || || || || || |||||||||||||||
Sbjct: 335 cagtcaagtttctgctcatgcttgacagaaaattgaagaacaagtgtcttatccttgttg 394
Score = 65.9 bits (33), Expect = 5e-009
Identities = 78/93 (83%)
Strand = Plus / Plus
Query: 1074 attatcaatgagaatgctgtatgttgcatcaggacggatgatcaaagtgtaaacatgagt 1133
||||||||||||||||||||| || |||||||| || | || ||||| |||||||||||
Sbjct: 85 attatcaatgagaatgctgtaggtagcatcagggcgaagaatgaaagtataaacatgagt 144
Query: 1134 caactgatcagtctcacaaggcacatccttctt 1166
| |||||| || ||||| | |||||||||||
Sbjct: 145 aagctgatccgtttcacatgatacatccttctt 177
Score = 40.1 bits (20), Expect = 0.30
Identities = 41/48 (85%)
Strand = Plus / Plus
Query: 1506 ctcatccttcttccactcggacttgacccaccgactttcccagccatc 1553
||||||||||||||| ||||| | ||||| ||| ||||||| |||||
Sbjct: 517 ctcatccttcttccaatcggatatcacccaacgattttcccatccatc 564
>gb|DR165313.1|DR165313 RTPHOS1_4_D06.b1_A029 Roots minus phosphorous Pinus taeda cDNA clone
RTPHOS1_4_D06_A029 3', mRNA sequence
Length = 681
Score = 103 bits (52), Expect = 2e-020
Identities = 148/180 (82%)
Strand = Plus / Plus
Query: 1204 tgaaccttcttggtgctgtacccacagatatctggtccaaacataatgctgtaagatgtg 1263
||||||||||| || || || ||||| || ||||| |||||||| || ||||||| |||
Sbjct: 253 tgaaccttctttgtactataaccacatatgtctggaccaaacatgatactgtaaggtgta 312
Query: 1264 tctccaccaaatttcttctggtctacatcaccacccagcaatttgacgtagccaccgccg 1323
||||||||||| ||||| ||||| |||||||||| || | || || || ||||| |||
Sbjct: 313 tctccaccaaacttcttttggtcaacatcaccactcaatagcttcacatatccaccaccg 372
Query: 1324 cagtcaagcttctgctcgtgcttcacagagaactgcagcaccagggtcttatccttgttg 1383
|||||||| |||||||| ||||| ||||| || || || || || |||||||||||||||
Sbjct: 373 cagtcaagtttctgctcatgcttgacagaaaattgaagaacaagtgtcttatccttgttg 432
Score = 65.9 bits (33), Expect = 5e-009
Identities = 78/93 (83%)
Strand = Plus / Plus
Query: 1074 attatcaatgagaatgctgtatgttgcatcaggacggatgatcaaagtgtaaacatgagt 1133
||||||||||||||||||||| || |||||||| || | || ||||| |||||||||||
Sbjct: 123 attatcaatgagaatgctgtaggtagcatcagggcgaagaatgaaagtataaacatgagt 182
Query: 1134 caactgatcagtctcacaaggcacatccttctt 1166
| |||||| || ||||| | |||||||||||
Sbjct: 183 aagctgatccgtttcacatgatacatccttctt 215
Score = 44.1 bits (22), Expect = 0.019
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 958 tcaggaatgtactccttgtcatcccagtcctcaggctt 995
||||||||||| |||||||| |||||||| || |||||
Sbjct: 7 tcaggaatgtattccttgtcttcccagtcttctggctt 44
Score = 40.1 bits (20), Expect = 0.30
Identities = 41/48 (85%)
Strand = Plus / Plus
Query: 1506 ctcatccttcttccactcggacttgacccaccgactttcccagccatc 1553
||||||||||||||| ||||| | ||||| ||| ||||||| |||||
Sbjct: 555 ctcatccttcttccaatcggatatcacccaacgattttcccatccatc 602
>gb|AW042658.1|AW042658 ST23A07 Pine TriplEx shoot tip library Pinus taeda cDNA clone
ST23A07, mRNA sequence
Length = 573
Score = 101 bits (51), Expect = 9e-020
Identities = 157/191 (82%), Gaps = 1/191 (0%)
Strand = Plus / Minus
Query: 1208 ccttcttggtgctgtacccacagatatct-ggtccaaacataatgctgtaagatgtgtct 1266
||||||| |||||||| || || || ||| |||||||||||||| || |||| ||| |||
Sbjct: 468 ccttcttagtgctgtaaccgcaaatgtcttggtccaaacataatactataaggtgtctct 409
Query: 1267 ccaccaaatttcttctggtctacatcaccacccagcaatttgacgtagccaccgccgcag 1326
|||| || ||||||||||| | ||||||| | ||| || ||||||||||| || ||
Sbjct: 408 ccactgaaattcttctggtcaatttcaccacttaacaactttacgtagccaccaccacaa 349
Query: 1327 tcaagcttctgctcgtgcttcacagagaactgcagcaccagggtcttatccttgttgctg 1386
||||| || || || ||||| ||||| ||||| || || ||||||||||||||||||||
Sbjct: 348 tcaagtttttgttcatgcttgacagaaaactgaagaacaagggtcttatccttgttgcta 289
Query: 1387 aactcagggta 1397
|||||||||||
Sbjct: 288 aactcagggta 278
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 233,168
Number of Sequences: 355925
Number of extensions: 233168
Number of successful extensions: 68336
Number of sequences better than 0.5: 112
Number of HSP's better than 0.5 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 67899
Number of HSP's gapped (non-prelim): 392
length of query: 1733
length of database: 217,277,237
effective HSP length: 20
effective length of query: 1713
effective length of database: 210,158,737
effective search space: 360001916481
effective search space used: 360001916481
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)