BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 131537.2.288
(1775 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CF399849.1|CF399849 RTWW1_1_D05.g1_A015 Well-watered lob... 84 2e-014
gb|CX649825.1|CX649825 COLD1_41_E09.g1_A029 Root cold Pinus... 84 2e-014
gb|DR022316.1|DR022316 STRS1_50_F11.b1_A034 Shoot tip pitch... 84 2e-014
gb|DR022608.1|DR022608 STRS1_52_E11.b1_A034 Shoot tip pitch... 84 2e-014
gb|DR059216.1|DR059216 RTNIT1_16_A01.g1_A029 Roots minus ni... 84 2e-014
gb|DR683828.1|DR683828 EST1073904 Normalized pine embryo li... 84 2e-014
gb|DR049704.1|DR049704 RTBOR1_18_B06.g1_A029 Roots plus add... 82 9e-014
gb|CF395791.1|CF395791 RTDS2_17_D04.g1_A021 Drought-stresse... 56 5e-006
gb|CF475079.1|CF475079 RTWW2_5_G11.g1_A021 Well-watered lob... 56 5e-006
gb|CF475540.1|CF475540 RTWW2_12_A06.g1_A021 Well-watered lo... 56 5e-006
gb|CX649743.1|CX649743 COLD1_41_E09.b1_A029 Root cold Pinus... 56 5e-006
gb|DT638624.1|DT638624 EST1153555 Normalized pine embryo li... 54 2e-005
gb|BQ634041.1|BQ634041 NXRV065_A08_F NXRV (Nsf Xylem Root w... 50 3e-004
gb|BQ655120.1|BQ655120 NXRV090_E02_F NXRV (Nsf Xylem Root w... 50 3e-004
gb|CF472897.1|CF472897 RTDS1_12_A05.g1_A015 Drought-stresse... 50 3e-004
gb|CF472908.1|CF472908 RTDS1_12_A06.g1_A015 Drought-stresse... 50 3e-004
gb|CO198652.1|CO198652 GEO1_15_A02.g1_A029 Root gravitropis... 50 3e-004
gb|DR688361.1|DR688361 EST1078445 Normalized pine embryo li... 50 3e-004
gb|DR694395.1|DR694395 EST1084487 Normalized pine embryo li... 50 3e-004
gb|DT634670.1|DT634670 EST1149601 Normalized pine embryo li... 50 3e-004
gb|BF609050.1|BF609050 NXSI_039_G11_F NXSI (Nsf Xylem Side ... 44 0.019
gb|BM134211.1|BM134211 NXLV_018_B02_F NXLV (Nsf Xylem Late ... 44 0.019
gb|CF472832.1|CF472832 RTDS1_12_A05.b1_A015 Drought-stresse... 44 0.019
gb|CF472877.1|CF472877 RTDS1_12_A06.b1_A015 Drought-stresse... 44 0.019
gb|AW010860.1|AW010860 ST12C08 Pine TriplEx shoot tip libra... 40 0.30
gb|BQ697139.1|BQ697139 NXPV_050_A04_F NXPV (Nsf Xylem Plani... 40 0.30
gb|CD022340.1|CD022340 NXPV_046_H10_F NXPV (Nsf Xylem Plani... 40 0.30
gb|DR685422.1|DR685422 EST1075499 Normalized pine embryo li... 40 0.30
>gb|CF399849.1|CF399849 RTWW1_1_D05.g1_A015 Well-watered loblolly pine roots WW1 Pinus taeda
cDNA clone RTWW1_1_D05_A015 5', mRNA sequence
Length = 685
Score = 83.8 bits (42), Expect = 2e-014
Identities = 171/214 (79%)
Strand = Plus / Plus
Query: 913 taagcaaatgggttttccatgagaggggacatctaaaggctgttaatgttaggcatcaca 972
||||||| |||||||||||||| ||||| ||||| |||||||| |||||| ||||| |
Sbjct: 345 taagcaagtgggttttccatgaaaggggtcatcttaaggctgtaaatgttcagcatcgta 404
Query: 973 aggttggggagaccaatgaaccaggcatgtaccgcattaatgatgacctggaatactctg 1032
| ||||||||||| |||||| | ||||| || || | |||| ||||||||||||| |
Sbjct: 405 aagttggggagacttttgaacctgctatgtatcgaatcactgatcacctggaatactccg 464
Query: 1033 ttgagatctatgaatggtccggaacaagctggaagccgtatgttgctgatgatgtgcagc 1092
|||| || ||||||||| | |||| |||||||| || |||| ||||| |||||
Sbjct: 465 ttgaaatttatgaatggactggaaaggattggaagccttacattgcagatgacgtgcaag 524
Query: 1093 ttcaatttttcatgatgagcccttacgttctgaa 1126
| || |||| ||||||||| ||||| ||||||||
Sbjct: 525 tgcagttttacatgatgagtccttatgttctgaa 558
Score = 56.0 bits (28), Expect = 5e-006
Identities = 61/72 (84%)
Strand = Plus / Plus
Query: 759 ttggtttcggttatgcaggcaagaaataatgctcgggtgctgttatctggatcactcgat 818
||||| || ||| ||||||||||||||||||||||||| || | |||||||| || |||
Sbjct: 191 ttggtgtcagttgtgcaggcaagaaataatgctcgggttcttatttctggatcccttgat 250
Query: 819 ctgtttagcaac 830
| |||||||||
Sbjct: 251 ttatttagcaac 262
>gb|CX649825.1|CX649825 COLD1_41_E09.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_41_E09_A029 5', mRNA sequence
Length = 817
Score = 83.8 bits (42), Expect = 2e-014
Identities = 171/214 (79%)
Strand = Plus / Minus
Query: 913 taagcaaatgggttttccatgagaggggacatctaaaggctgttaatgttaggcatcaca 972
||||||| |||||||||||||| ||||| ||||| |||||||| |||||| ||||| |
Sbjct: 813 taagcaagtgggttttccatgaaaggggtcatcttaaggctgtaaatgttcagcatcgta 754
Query: 973 aggttggggagaccaatgaaccaggcatgtaccgcattaatgatgacctggaatactctg 1032
| ||||||||||| |||||| | ||||| || || | |||| ||||||||||||| |
Sbjct: 753 aagttggggagacttttgaacctgctatgtatcgaatcactgatcacctggaatactccg 694
Query: 1033 ttgagatctatgaatggtccggaacaagctggaagccgtatgttgctgatgatgtgcagc 1092
|||| || ||||||||| | |||| |||||||| || |||| ||||| |||||
Sbjct: 693 ttgaaatttatgaatggactggaaaggattggaagccttacattgcagatgacgtgcaag 634
Query: 1093 ttcaatttttcatgatgagcccttacgttctgaa 1126
| || |||| ||||||||| ||||| ||||||||
Sbjct: 633 tgcagttttacatgatgagtccttatgttctgaa 600
>gb|DR022316.1|DR022316 STRS1_50_F11.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_50_F11_A034 3', mRNA sequence
Length = 792
Score = 83.8 bits (42), Expect = 2e-014
Identities = 171/214 (79%)
Strand = Plus / Plus
Query: 913 taagcaaatgggttttccatgagaggggacatctaaaggctgttaatgttaggcatcaca 972
||||||| |||||||||||||| ||||| ||||| |||||||| |||||| ||||| |
Sbjct: 63 taagcaagtgggttttccatgaaaggggtcatcttaaggctgtaaatgttcagcatcgta 122
Query: 973 aggttggggagaccaatgaaccaggcatgtaccgcattaatgatgacctggaatactctg 1032
| ||||||||||| |||||| | ||||| || || | |||| ||||||||||||| |
Sbjct: 123 aagttggggagacttttgaacctgctatgtatcgaatcactgatcacctggaatactccg 182
Query: 1033 ttgagatctatgaatggtccggaacaagctggaagccgtatgttgctgatgatgtgcagc 1092
|||| || ||||||||| | |||| |||||||| || |||| ||||| |||||
Sbjct: 183 ttgaaatttatgaatggactggaaaggattggaagccttacattgcagatgacgtgcaag 242
Query: 1093 ttcaatttttcatgatgagcccttacgttctgaa 1126
| || |||| ||||||||| ||||| ||||||||
Sbjct: 243 tgcagttttacatgatgagtccttatgttctgaa 276
>gb|DR022608.1|DR022608 STRS1_52_E11.b1_A034 Shoot tip pitch canker susceptible Pinus taeda
cDNA clone STRS1_52_E11_A034 3', mRNA sequence
Length = 826
Score = 83.8 bits (42), Expect = 2e-014
Identities = 171/214 (79%)
Strand = Plus / Plus
Query: 913 taagcaaatgggttttccatgagaggggacatctaaaggctgttaatgttaggcatcaca 972
||||||| |||||||||||||| ||||| ||||| |||||||| |||||| ||||| |
Sbjct: 97 taagcaagtgggttttccatgaaaggggtcatcttaaggctgtaaatgttcagcatcgta 156
Query: 973 aggttggggagaccaatgaaccaggcatgtaccgcattaatgatgacctggaatactctg 1032
| ||||||||||| |||||| | ||||| || || | |||| ||||||||||||| |
Sbjct: 157 aagttggggagacttttgaacctgctatgtatcgaatcactgatcacctggaatactccg 216
Query: 1033 ttgagatctatgaatggtccggaacaagctggaagccgtatgttgctgatgatgtgcagc 1092
|||| || ||||||||| | |||| |||||||| || |||| ||||| |||||
Sbjct: 217 ttgaaatttatgaatggactggaaaggattggaagccttacattgcagatgacgtgcaag 276
Query: 1093 ttcaatttttcatgatgagcccttacgttctgaa 1126
| || |||| ||||||||| ||||| ||||||||
Sbjct: 277 tgcagttttacatgatgagtccttatgttctgaa 310
>gb|DR059216.1|DR059216 RTNIT1_16_A01.g1_A029 Roots minus nitrogen Pinus taeda cDNA clone
RTNIT1_16_A01_A029 5', mRNA sequence
Length = 618
Score = 83.8 bits (42), Expect = 2e-014
Identities = 171/214 (79%)
Strand = Plus / Plus
Query: 913 taagcaaatgggttttccatgagaggggacatctaaaggctgttaatgttaggcatcaca 972
||||||| |||||||||||||| ||||| ||||| |||||||| |||||| ||||| |
Sbjct: 189 taagcaagtgggttttccatgaaaggggtcatcttaaggctgtaaatgttcagcatcgta 248
Query: 973 aggttggggagaccaatgaaccaggcatgtaccgcattaatgatgacctggaatactctg 1032
| ||||||||||| |||||| | ||||| || || | |||| ||||||||||||| |
Sbjct: 249 aagttggggagacttttgaacctgctatgtatcgaatcactgatcacctggaatactccg 308
Query: 1033 ttgagatctatgaatggtccggaacaagctggaagccgtatgttgctgatgatgtgcagc 1092
|||| || ||||||||| | |||| |||||||| || |||| ||||| |||||
Sbjct: 309 ttgaaatttatgaatggactggaaaggattggaagccttacattgcagatgacgtgcaag 368
Query: 1093 ttcaatttttcatgatgagcccttacgttctgaa 1126
| || |||| ||||||||| ||||| ||||||||
Sbjct: 369 tgcagttttacatgatgagtccttatgttctgaa 402
Score = 56.0 bits (28), Expect = 5e-006
Identities = 61/72 (84%)
Strand = Plus / Plus
Query: 759 ttggtttcggttatgcaggcaagaaataatgctcgggtgctgttatctggatcactcgat 818
||||| || ||| ||||||||||||||||||||||||| || | |||||||| || |||
Sbjct: 35 ttggtgtcagttgtgcaggcaagaaataatgctcgggttcttatttctggatcccttgat 94
Query: 819 ctgtttagcaac 830
| |||||||||
Sbjct: 95 ttatttagcaac 106
>gb|DR683828.1|DR683828 EST1073904 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAAL74 3' end, mRNA sequence
Length = 864
Score = 83.8 bits (42), Expect = 2e-014
Identities = 171/214 (79%)
Strand = Plus / Plus
Query: 913 taagcaaatgggttttccatgagaggggacatctaaaggctgttaatgttaggcatcaca 972
||||||| |||||||||||||| ||||| ||||| |||||||| |||||| ||||| |
Sbjct: 475 taagcaagtgggttttccatgaaaggggtcatcttaaggctgtaaatgttcagcatcgta 534
Query: 973 aggttggggagaccaatgaaccaggcatgtaccgcattaatgatgacctggaatactctg 1032
| ||||||||||| |||||| | ||||| || || | |||| ||||||||||||| |
Sbjct: 535 aagttggggagacttttgaacctgctatgtatcgaatcactgatcacctggaatactccg 594
Query: 1033 ttgagatctatgaatggtccggaacaagctggaagccgtatgttgctgatgatgtgcagc 1092
|||| || ||||||||| | |||| |||||||| || |||| ||||| |||||
Sbjct: 595 ttgaaatttatgaatggactggaaaggattggaagccttacattgcagatgacgtgcaag 654
Query: 1093 ttcaatttttcatgatgagcccttacgttctgaa 1126
| || |||| ||||||||| ||||| ||||||||
Sbjct: 655 tgcagttttacatgatgagtccttatgttctgaa 688
Score = 54.0 bits (27), Expect = 2e-005
Identities = 51/59 (86%)
Strand = Plus / Plus
Query: 772 tgcaggcaagaaataatgctcgggtgctgttatctggatcactcgatctgtttagcaac 830
||||||||||||||||||||||||| || | |||||||| || ||| | |||||||||
Sbjct: 334 tgcaggcaagaaataatgctcgggttcttatttctggatcccttgatttatttagcaac 392
>gb|DR049704.1|DR049704 RTBOR1_18_B06.g1_A029 Roots plus added boron Pinus taeda cDNA clone
RTBOR1_18_B06_A029 5', mRNA sequence
Length = 728
Score = 81.8 bits (41), Expect = 9e-014
Identities = 113/137 (82%)
Strand = Plus / Plus
Query: 913 taagcaaatgggttttccatgagaggggacatctaaaggctgttaatgttaggcatcaca 972
||||||| |||||||||||||| ||||| ||||| |||||||| |||||| ||||| |
Sbjct: 530 taagcaagtgggttttccatgaaaggggtcatcttaaggctgtaaatgttcagcatcgta 589
Query: 973 aggttggggagaccaatgaaccaggcatgtaccgcattaatgatgacctggaatactctg 1032
| ||||||||||| |||||| | ||||| || || | |||| ||||||||||||| |
Sbjct: 590 aagttggggagacttttgaacctgctatgtatcgaatcactgatcacctggaatactccg 649
Query: 1033 ttgagatctatgaatgg 1049
|||| || |||||||||
Sbjct: 650 ttgaaatttatgaatgg 666
Score = 56.0 bits (28), Expect = 5e-006
Identities = 61/72 (84%)
Strand = Plus / Plus
Query: 759 ttggtttcggttatgcaggcaagaaataatgctcgggtgctgttatctggatcactcgat 818
||||| || ||| ||||||||||||||||||||||||| || | |||||||| || |||
Sbjct: 376 ttggtgtcagttgtgcaggcaagaaataatgctcgggttcttatttctggatcccttgat 435
Query: 819 ctgtttagcaac 830
| |||||||||
Sbjct: 436 ttatttagcaac 447
>gb|CF395791.1|CF395791 RTDS2_17_D04.g1_A021 Drought-stressed loblolly pine roots DS2 Pinus
taeda cDNA clone RTDS2_17_D04_A021 5', mRNA sequence
Length = 757
Score = 56.0 bits (28), Expect = 5e-006
Identities = 61/72 (84%)
Strand = Plus / Plus
Query: 759 ttggtttcggttatgcaggcaagaaataatgctcgggtgctgttatctggatcactcgat 818
||||| || ||| ||||||||||||||||||||||||| || | |||||||| || |||
Sbjct: 593 ttggtgtcagttgtgcaggcaagaaataatgctcgggttcttatttctggatcccttgat 652
Query: 819 ctgtttagcaac 830
| |||||||||
Sbjct: 653 ttatttagcaac 664
Score = 50.1 bits (25), Expect = 3e-004
Identities = 58/69 (84%)
Strand = Plus / Plus
Query: 237 cgcgggttcgatctcgacttccgcctcgctgacgatcccaagctctcgctccaccgctac 296
||||| ||||||||||||||| ||||| | |||||||||||| ||||||| | |||
Sbjct: 71 cgcggtttcgatctcgacttcaagctcgcacatgatcccaagctcgcgctccagagatac 130
Query: 297 ggccagtac 305
|||||||||
Sbjct: 131 ggccagtac 139
>gb|CF475079.1|CF475079 RTWW2_5_G11.g1_A021 Well-watered loblolly pine roots WW2 Pinus
taeda cDNA clone RTWW2_5_G11_A021 5', mRNA sequence
Length = 783
Score = 56.0 bits (28), Expect = 5e-006
Identities = 61/72 (84%)
Strand = Plus / Plus
Query: 759 ttggtttcggttatgcaggcaagaaataatgctcgggtgctgttatctggatcactcgat 818
||||| || ||| ||||||||||||||||||||||||| || | |||||||| || |||
Sbjct: 641 ttggtgtcagttgtgcaggcaagaaataatgctcgggttcttatttctggatcccttgat 700
Query: 819 ctgtttagcaac 830
| |||||||||
Sbjct: 701 ttatttagcaac 712
Score = 50.1 bits (25), Expect = 3e-004
Identities = 58/69 (84%)
Strand = Plus / Plus
Query: 237 cgcgggttcgatctcgacttccgcctcgctgacgatcccaagctctcgctccaccgctac 296
||||| ||||||||||||||| ||||| | |||||||||||| ||||||| | |||
Sbjct: 119 cgcggtttcgatctcgacttcaagctcgcacatgatcccaagctcgcgctccagagatac 178
Query: 297 ggccagtac 305
|||||||||
Sbjct: 179 ggccagtac 187
>gb|CF475540.1|CF475540 RTWW2_12_A06.g1_A021 Well-watered loblolly pine roots WW2 Pinus
taeda cDNA clone RTWW2_12_A06_A021 5', mRNA sequence
Length = 752
Score = 56.0 bits (28), Expect = 5e-006
Identities = 61/72 (84%)
Strand = Plus / Plus
Query: 759 ttggtttcggttatgcaggcaagaaataatgctcgggtgctgttatctggatcactcgat 818
||||| || ||| ||||||||||||||||||||||||| || | |||||||| || |||
Sbjct: 577 ttggtgtcagttgtgcaggcaagaaataatgctcgggttcttatttctggatcccttgat 636
Query: 819 ctgtttagcaac 830
| |||||||||
Sbjct: 637 ttatttagcaac 648
Score = 50.1 bits (25), Expect = 3e-004
Identities = 58/69 (84%)
Strand = Plus / Plus
Query: 237 cgcgggttcgatctcgacttccgcctcgctgacgatcccaagctctcgctccaccgctac 296
||||| ||||||||||||||| ||||| | |||||||||||| ||||||| | |||
Sbjct: 55 cgcggtttcgatctcgacttcaagctcgcacatgatcccaagctcgcgctccagagatac 114
Query: 297 ggccagtac 305
|||||||||
Sbjct: 115 ggccagtac 123
>gb|CX649743.1|CX649743 COLD1_41_E09.b1_A029 Root cold Pinus taeda cDNA clone
COLD1_41_E09_A029 3', mRNA sequence
Length = 805
Score = 56.0 bits (28), Expect = 5e-006
Identities = 61/72 (84%)
Strand = Plus / Minus
Query: 759 ttggtttcggttatgcaggcaagaaataatgctcgggtgctgttatctggatcactcgat 818
||||| || ||| ||||||||||||||||||||||||| || | |||||||| || |||
Sbjct: 72 ttggtgtcagttgtgcaggcaagaaataatgctcgggttcttatttctggatcccttgat 13
Query: 819 ctgtttagcaac 830
| |||||||||
Sbjct: 12 ttatttagcaac 1
Score = 50.1 bits (25), Expect = 3e-004
Identities = 58/69 (84%)
Strand = Plus / Minus
Query: 237 cgcgggttcgatctcgacttccgcctcgctgacgatcccaagctctcgctccaccgctac 296
||||| ||||||||||||||| ||||| | |||||||||||| ||||||| | |||
Sbjct: 594 cgcggtttcgatctcgacttcaagctcgcacatgatcccaagctcgcgctccagagatac 535
Query: 297 ggccagtac 305
|||||||||
Sbjct: 534 ggccagtac 526
>gb|DT638624.1|DT638624 EST1153555 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMHH42 3' end, mRNA sequence
Length = 860
Score = 54.0 bits (27), Expect = 2e-005
Identities = 51/59 (86%)
Strand = Plus / Plus
Query: 772 tgcaggcaagaaataatgctcgggtgctgttatctggatcactcgatctgtttagcaac 830
||||||||||||||||||||||||| || | |||||||| || ||| | |||||||||
Sbjct: 751 tgcaggcaagaaataatgctcgggttcttatttctggatcccttgatttatttagcaac 809
Score = 50.1 bits (25), Expect = 3e-004
Identities = 58/69 (84%)
Strand = Plus / Plus
Query: 237 cgcgggttcgatctcgacttccgcctcgctgacgatcccaagctctcgctccaccgctac 296
||||| ||||||||||||||| ||||| | |||||||||||| ||||||| | |||
Sbjct: 215 cgcggtttcgatctcgacttcaagctcgcacatgatcccaagctcgcgctccagagatac 274
Query: 297 ggccagtac 305
|||||||||
Sbjct: 275 ggccagtac 283
>gb|BQ634041.1|BQ634041 NXRV065_A08_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV065_A08 5' similar to Arabidopsis thaliana
sequence At5g66680
dolichyl-di-phosphooligosaccharide-protein
glycotransferase (oligosaccharyltransferase)-like see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 560
Score = 50.1 bits (25), Expect = 3e-004
Identities = 58/69 (84%)
Strand = Plus / Plus
Query: 237 cgcgggttcgatctcgacttccgcctcgctgacgatcccaagctctcgctccaccgctac 296
||||| ||||||||||||||| ||||| | |||||||||||| ||||||| | |||
Sbjct: 221 cgcggtttcgatctcgacttcaagctcgcacatgatcccaagctcgcgctccagagatac 280
Query: 297 ggccagtac 305
|||||||||
Sbjct: 281 ggccagtac 289
>gb|BQ655120.1|BQ655120 NXRV090_E02_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV090_E02 5' similar to Arabidopsis thaliana
sequence At5g66680
dolichyl-di-phosphooligosaccharide-protein
glycotransferase (oligosaccharyltransferase)-like see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 461
Score = 50.1 bits (25), Expect = 3e-004
Identities = 58/69 (84%)
Strand = Plus / Plus
Query: 237 cgcgggttcgatctcgacttccgcctcgctgacgatcccaagctctcgctccaccgctac 296
||||| ||||||||||||||| ||||| | |||||||||||| ||||||| | |||
Sbjct: 202 cgcggtttcgatctcgacttcaagctcgcacatgatcccaagctcgcgctccagagatac 261
Query: 297 ggccagtac 305
|||||||||
Sbjct: 262 ggccagtac 270
>gb|CF472897.1|CF472897 RTDS1_12_A05.g1_A015 Drought-stressed loblolly pine roots DS1 Pinus
taeda cDNA clone RTDS1_12_A05_A015 5', mRNA sequence
Length = 772
Score = 50.1 bits (25), Expect = 3e-004
Identities = 58/69 (84%)
Strand = Plus / Plus
Query: 237 cgcgggttcgatctcgacttccgcctcgctgacgatcccaagctctcgctccaccgctac 296
||||| ||||||||||||||| ||||| | |||||||||||| ||||||| | |||
Sbjct: 233 cgcggtttcgatctcgacttcaagctcgcacatgatcccaagctcgcgctccagagatac 292
Query: 297 ggccagtac 305
|||||||||
Sbjct: 293 ggccagtac 301
>gb|CF472908.1|CF472908 RTDS1_12_A06.g1_A015 Drought-stressed loblolly pine roots DS1 Pinus
taeda cDNA clone RTDS1_12_A06_A015 5', mRNA sequence
Length = 769
Score = 50.1 bits (25), Expect = 3e-004
Identities = 58/69 (84%)
Strand = Plus / Plus
Query: 237 cgcgggttcgatctcgacttccgcctcgctgacgatcccaagctctcgctccaccgctac 296
||||| ||||||||||||||| ||||| | |||||||||||| ||||||| | |||
Sbjct: 233 cgcggtttcgatctcgacttcaagctcgcacatgatcccaagctcgcgctccagagatac 292
Query: 297 ggccagtac 305
|||||||||
Sbjct: 293 ggccagtac 301
>gb|CO198652.1|CO198652 GEO1_15_A02.g1_A029 Root gravitropism April 2003 test Pinus taeda
cDNA clone GEO1_15_A02_A029 5', mRNA sequence
Length = 596
Score = 50.1 bits (25), Expect = 3e-004
Identities = 58/69 (84%)
Strand = Plus / Plus
Query: 237 cgcgggttcgatctcgacttccgcctcgctgacgatcccaagctctcgctccaccgctac 296
||||| ||||||||||||||| ||||| | |||||||||||| ||||||| | |||
Sbjct: 94 cgcggtttcgatctcgacttcaagctcgcacatgatcccaagctcgcgctccagagatac 153
Query: 297 ggccagtac 305
|||||||||
Sbjct: 154 ggccagtac 162
>gb|DR688361.1|DR688361 EST1078445 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAC538 3' end, mRNA sequence
Length = 797
Score = 50.1 bits (25), Expect = 3e-004
Identities = 62/73 (84%), Gaps = 1/73 (1%)
Strand = Plus / Plus
Query: 913 taagcaaatgggttttccatgagaggggacatctaaaggctgttaatgttaggcatcaca 972
||||||| |||||||||||||| ||||| ||||| || ||||| |||||| ||||| |
Sbjct: 695 taagcaagtgggttttccatgaaaggggtcatcttaa-gctgtaaatgttcagcatcgta 753
Query: 973 aggttggggagac 985
| |||||||||||
Sbjct: 754 aagttggggagac 766
Score = 50.1 bits (25), Expect = 3e-004
Identities = 49/57 (85%)
Strand = Plus / Plus
Query: 774 caggcaagaaataatgctcgggtgctgttatctggatcactcgatctgtttagcaac 830
||||||||||||||||||||||| || | |||||||| || ||| | |||||||||
Sbjct: 557 caggcaagaaataatgctcgggttcttatttctggatcccttgatttatttagcaac 613
Score = 50.1 bits (25), Expect = 3e-004
Identities = 58/69 (84%)
Strand = Plus / Plus
Query: 237 cgcgggttcgatctcgacttccgcctcgctgacgatcccaagctctcgctccaccgctac 296
||||| ||||||||||||||| ||||| | |||||||||||| ||||||| | |||
Sbjct: 20 cgcggtttcgatctcgacttcaagctcgcacatgatcccaagctcgcgctccagagatac 79
Query: 297 ggccagtac 305
|||||||||
Sbjct: 80 ggccagtac 88
>gb|DR694395.1|DR694395 EST1084487 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAEB89 3' end, mRNA sequence
Length = 850
Score = 50.1 bits (25), Expect = 3e-004
Identities = 58/69 (84%)
Strand = Plus / Plus
Query: 237 cgcgggttcgatctcgacttccgcctcgctgacgatcccaagctctcgctccaccgctac 296
||||| ||||||||||||||| ||||| | |||||||||||| ||||||| | |||
Sbjct: 206 cgcggtttcgatctcgacttcaagctcgcacatgatcccaagctcgcgctccagagatac 265
Query: 297 ggccagtac 305
|||||||||
Sbjct: 266 ggccagtac 274
Score = 48.1 bits (24), Expect = 0.001
Identities = 60/72 (83%)
Strand = Plus / Plus
Query: 759 ttggtttcggttatgcaggcaagaaataatgctcgggtgctgttatctggatcactcgat 818
||||| || ||| |||| |||||||||||||||||||| || | |||||||| || |||
Sbjct: 728 ttggtgtcagttgtgcacgcaagaaataatgctcgggttcttatttctggatcccttgat 787
Query: 819 ctgtttagcaac 830
| |||||||||
Sbjct: 788 ttatttagcaac 799
>gb|DT634670.1|DT634670 EST1149601 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PIMG854 3' end, mRNA sequence
Length = 811
Score = 50.1 bits (25), Expect = 3e-004
Identities = 49/57 (85%)
Strand = Plus / Plus
Query: 774 caggcaagaaataatgctcgggtgctgttatctggatcactcgatctgtttagcaac 830
||||||||||||||||||||||| || | |||||||| || ||| | |||||||||
Sbjct: 725 caggcaagaaataatgctcgggttcttatttctggatcccttgatttatttagcaac 781
Score = 50.1 bits (25), Expect = 3e-004
Identities = 58/69 (84%)
Strand = Plus / Plus
Query: 237 cgcgggttcgatctcgacttccgcctcgctgacgatcccaagctctcgctccaccgctac 296
||||| ||||||||||||||| ||||| | |||||||||||| ||||||| | |||
Sbjct: 181 cgcggtttcgatctcgacttcaagctcgcacatgatcccaagctcgcgctccagagatac 240
Query: 297 ggccagtac 305
|||||||||
Sbjct: 241 ggccagtac 249
>gb|BF609050.1|BF609050 NXSI_039_G11_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_039_G11 5' similar to Arabidopsis thaliana
sequence At5g66680
dolichyl-di-phosphooligosaccharide-protein
glycotransferase (oligosaccharyltransferase)-like see
http://mips.gsf.de/proj/thal/db/index.html, mRNA sequence
Length = 384
Score = 44.1 bits (22), Expect = 0.019
Identities = 91/114 (79%)
Strand = Plus / Plus
Query: 1013 tgatgacctggaatactctgttgagatctatgaatggtccggaacaagctggaagccgta 1072
|||| ||||||||||||| ||||| || ||||||||| | |||| |||||||| ||
Sbjct: 53 tgatcacctggaatactccgttgaaatttatgaatggactggaaaggattggaagcctta 112
Query: 1073 tgttgctgatgatgtgcagcttcaatttttcatgatgagcccttacgttctgaa 1126
|||| ||||| ||||| | || |||| ||||||||| ||||| ||||||||
Sbjct: 113 cattgcagatgacgtgcaagtgcagttttacatgatgagtccttatgttctgaa 166
>gb|BM134211.1|BM134211 NXLV_018_B02_F NXLV (Nsf Xylem Late wood Vertical) Pinus taeda cDNA
clone NXLV_018_B02 5' similar to Arabidopsis thaliana
sequence At5g66680
dolichyl-di-phosphooligosaccharide-protein
glycotransferase (oligosaccharyltransferase)-like see
http://mips.gsf.de/proj/thal/db/index.html, mRNA sequence
Length = 609
Score = 44.1 bits (22), Expect = 0.019
Identities = 91/114 (79%)
Strand = Plus / Plus
Query: 1013 tgatgacctggaatactctgttgagatctatgaatggtccggaacaagctggaagccgta 1072
|||| ||||||||||||| ||||| || ||||||||| | |||| |||||||| ||
Sbjct: 20 tgatcacctggaatactccgttgaaatttatgaatggactggaaaggattggaagcctta 79
Query: 1073 tgttgctgatgatgtgcagcttcaatttttcatgatgagcccttacgttctgaa 1126
|||| ||||| ||||| | || |||| ||||||||| ||||| ||||||||
Sbjct: 80 cattgcagatgacgtgcaagtgcagttttacatgatgagtccttatgttctgaa 133
>gb|CF472832.1|CF472832 RTDS1_12_A05.b1_A015 Drought-stressed loblolly pine roots DS1 Pinus
taeda cDNA clone RTDS1_12_A05_A015 3', mRNA sequence
Length = 629
Score = 44.1 bits (22), Expect = 0.019
Identities = 91/114 (79%)
Strand = Plus / Plus
Query: 1013 tgatgacctggaatactctgttgagatctatgaatggtccggaacaagctggaagccgta 1072
|||| ||||||||||||| ||||| || ||||||||| | |||| |||||||| ||
Sbjct: 9 tgatcacctggaatactccgttgaaatttatgaatggactggaaaggattggaagcctta 68
Query: 1073 tgttgctgatgatgtgcagcttcaatttttcatgatgagcccttacgttctgaa 1126
|||| ||||| ||||| | || |||| ||||||||| ||||| ||||||||
Sbjct: 69 cattgcagatgacgtgcaagtgcagttttacatgatgagtccttatgttctgaa 122
>gb|CF472877.1|CF472877 RTDS1_12_A06.b1_A015 Drought-stressed loblolly pine roots DS1 Pinus
taeda cDNA clone RTDS1_12_A06_A015 3', mRNA sequence
Length = 632
Score = 44.1 bits (22), Expect = 0.019
Identities = 91/114 (79%)
Strand = Plus / Plus
Query: 1013 tgatgacctggaatactctgttgagatctatgaatggtccggaacaagctggaagccgta 1072
|||| ||||||||||||| ||||| || ||||||||| | |||| |||||||| ||
Sbjct: 13 tgatcacctggaatactccgttgaaatttatgaatggactggaaaggattggaagcctta 72
Query: 1073 tgttgctgatgatgtgcagcttcaatttttcatgatgagcccttacgttctgaa 1126
|||| ||||| ||||| | || |||| ||||||||| ||||| ||||||||
Sbjct: 73 cattgcagatgacgtgcaagtgcagttttacatgatgagtccttatgttctgaa 126
>gb|AW010860.1|AW010860 ST12C08 Pine TriplEx shoot tip library Pinus taeda cDNA clone
ST12C08, mRNA sequence
Length = 492
Score = 40.1 bits (20), Expect = 0.30
Identities = 32/36 (88%)
Strand = Plus / Plus
Query: 270 gatcccaagctctcgctccaccgctacggccagtac 305
|||||||||||| ||||||| | ||||||||||||
Sbjct: 11 gatcccaagctcgcgctccagagatacggccagtac 46
>gb|BQ697139.1|BQ697139 NXPV_050_A04_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_050_A04 5' similar to Arabidopsis
thaliana sequence At5g66680
dolichyl-di-phosphooligosaccharide-protein
glycotransferase (oligosaccharyltransferase)-like see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 420
Score = 40.1 bits (20), Expect = 0.30
Identities = 32/36 (88%)
Strand = Plus / Plus
Query: 270 gatcccaagctctcgctccaccgctacggccagtac 305
|||||||||||| ||||||| | ||||||||||||
Sbjct: 22 gatcccaagctcgcgctccagagatacggccagtac 57
>gb|CD022340.1|CD022340 NXPV_046_H10_F NXPV (Nsf Xylem Planings wood Vertical) Pinus taeda
cDNA clone NXPV_046_H10 5' similar to Arabidopsis
thaliana sequence At5g66680
dolichyl-di-phosphooligosaccharide-protein
glycotransferase (oligosaccharyltransferase)-like see
http://mips.gsf.de/proj/thal/db/index.html, mRNA
sequence
Length = 187
Score = 40.1 bits (20), Expect = 0.30
Identities = 32/36 (88%)
Strand = Plus / Plus
Query: 270 gatcccaagctctcgctccaccgctacggccagtac 305
|||||||||||| ||||||| | ||||||||||||
Sbjct: 22 gatcccaagctcgcgctccagagatacggccagtac 57
>gb|DR685422.1|DR685422 EST1075499 Normalized pine embryo library, Lib_D Pinus taeda cDNA
clone PWAB366 3' end, mRNA sequence
Length = 530
Score = 40.1 bits (20), Expect = 0.30
Identities = 32/36 (88%)
Strand = Plus / Plus
Query: 270 gatcccaagctctcgctccaccgctacggccagtac 305
|||||||||||| ||||||| | ||||||||||||
Sbjct: 21 gatcccaagctcgcgctccagagatacggccagtac 56
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 203,290
Number of Sequences: 355925
Number of extensions: 203290
Number of successful extensions: 54319
Number of sequences better than 0.5: 28
Number of HSP's better than 0.5 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 54223
Number of HSP's gapped (non-prelim): 60
length of query: 1775
length of database: 217,277,237
effective HSP length: 20
effective length of query: 1755
effective length of database: 210,158,737
effective search space: 368828583435
effective search space used: 368828583435
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)