BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 131537.2.280
(3445 letters)
Database: Pinus_nucl_with_EST.fasta
355,925 sequences; 217,277,237 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BX255440.1|BX255440 BX255440 Pinus pinaster differenciat... 135 1e-029
gb|CF666893.1|CF666893 RTCNT1_26_G09.g1_A029 Root control P... 135 1e-029
gb|CX713086.1|CX713086 RTPQ1_6_H09.g1_A032 Roots treated wi... 135 1e-029
gb|BX784163.1|BX784163 BX784163 Pinus pinaster differenciat... 129 8e-028
gb|CO159567.1|CO159567 FLD1_14_H08.b1_A029 Root flooded Pin... 127 3e-027
gb|AW290086.1|AW290086 NXNV010B09F Nsf Xylem Normal wood Ve... 113 5e-023
gb|AW290515.1|AW290515 NXNV027H08F Nsf Xylem Normal wood Ve... 113 5e-023
gb|AW981582.1|AW981582 PC14C11 Pine TriplEx pollen cone lib... 113 5e-023
gb|AW981682.1|AW981682 PC15D12 Pine TriplEx pollen cone lib... 113 5e-023
gb|BX248936.1|BX248936 BX248936 Pinus pinaster differenciat... 113 5e-023
gb|BF777472.1|BF777472 NXSI_069_A02_F NXSI (Nsf Xylem Side ... 113 5e-023
gb|BF778753.1|BF778753 NXSI_086_F09_F NXSI (Nsf Xylem Side ... 113 5e-023
gb|BG040013.1|BG040013 NXSI_105_D08_F NXSI (Nsf Xylem Side ... 113 5e-023
gb|BQ701080.1|BQ701080 NXRV115_C12_F NXRV (Nsf Xylem Root w... 113 5e-023
gb|CD026725.1|CD026725 NXNV010B09 Nsf Xylem Normal wood Ver... 113 5e-023
gb|CD027175.1|CD027175 NXNV027H08 Nsf Xylem Normal wood Ver... 113 5e-023
gb|CF397049.1|CF397049 RTDS2_26_F06.b1_A021 Drought-stresse... 113 5e-023
gb|CF397153.1|CF397153 RTDS2_26_F06.g1_A021 Drought-stresse... 113 5e-023
gb|BX678727.1|BX678727 BX678727 RS Pinus pinaster cDNA clon... 113 5e-023
gb|BX682195.1|BX682195 BX682195 RS Pinus pinaster cDNA clon... 113 5e-023
gb|CR394201.1|CR394201 CR394201 RN Pinus pinaster cDNA clon... 113 5e-023
gb|CO201518.1|CO201518 RTCNT2_6_G04.b1_A029 Root control 2 ... 113 5e-023
gb|CO201593.1|CO201593 RTCNT2_6_G04.g1_A029 Root control 2 ... 113 5e-023
gb|CV032026.1|CV032026 RTNACL1_5_F02.b1_A029 Roots plus add... 113 5e-023
gb|CV032084.1|CV032084 RTNACL1_5_F02.g2_A029 Roots plus add... 113 5e-023
gb|CX650493.1|CX650493 COLD1_46_C07.b1_A029 Root cold Pinus... 113 5e-023
gb|CX650566.1|CX650566 COLD1_46_C07.g1_A029 Root cold Pinus... 113 5e-023
gb|DR047965.1|DR047965 RTBOR1_5_F09.g2_A029 Roots plus adde... 113 5e-023
gb|DR095003.1|DR095003 STRR1_18_E02.b1_A033 Stem Response R... 113 5e-023
gb|DR095082.1|DR095082 STRR1_18_E02.g1_A033 Stem Response R... 113 5e-023
gb|AW011269.1|AW011269 ST18H01 Pine TriplEx shoot tip libra... 107 3e-021
gb|AW056640.1|AW056640 ST54A12 Pine TriplEx shoot tip libra... 107 3e-021
gb|AW754660.1|AW754660 PC04G11 Pine TriplEx pollen cone lib... 107 3e-021
gb|AL750447.1|AL750447 AL750447 RN Pinus pinaster cDNA clon... 107 3e-021
gb|AL750458.1|AL750458 AL750458 RN Pinus pinaster cDNA clon... 107 3e-021
gb|AL750742.1|AL750742 AL750742 RN Pinus pinaster cDNA clon... 107 3e-021
gb|BX250085.1|BX250085 BX250085 Pinus pinaster differenciat... 107 3e-021
gb|BX250870.1|BX250870 BX250870 Pinus pinaster differenciat... 107 3e-021
gb|BX251404.1|BX251404 BX251404 Pinus pinaster differenciat... 107 3e-021
gb|BX252858.1|BX252858 BX252858 Pinus pinaster differenciat... 107 3e-021
gb|BX253347.1|BX253347 BX253347 Pinus pinaster differenciat... 107 3e-021
gb|BE643713.1|BE643713 NXCI_043_E05_F NXCI (Nsf Xylem Compr... 107 3e-021
gb|BE643806.1|BE643806 NXCI_047_E02_F NXCI (Nsf Xylem Compr... 107 3e-021
gb|BE996971.1|BE996971 NXCI_093_E08_F NXCI (Nsf Xylem Compr... 107 3e-021
gb|BF220362.1|BF220362 NXCI_144_B09_F NXCI (Nsf Xylem Compr... 107 3e-021
gb|BF610039.1|BF610039 NXSI_054_A07_F NXSI (Nsf Xylem Side ... 107 3e-021
gb|BF777253.1|BF777253 NXSI_067_A03_F NXSI (Nsf Xylem Side ... 107 3e-021
gb|BF777914.1|BF777914 NXSI_078_E09_F NXSI (Nsf Xylem Side ... 107 3e-021
gb|BF778583.1|BF778583 NXSI_088_D04_F NXSI (Nsf Xylem Side ... 107 3e-021
gb|BG039238.1|BG039238 NXSI_096_F04_F NXSI (Nsf Xylem Side ... 107 3e-021
gb|BG275363.1|BG275363 NXSI_142_H03_F NXSI (Nsf Xylem Side ... 107 3e-021
gb|BG275585.1|BG275585 NXSI_143_E11_F NXSI (Nsf Xylem Side ... 107 3e-021
gb|BG275619.1|BG275619 NXSI_144_A01_F NXSI (Nsf Xylem Side ... 107 3e-021
gb|BG275834.1|BG275834 NXSI_148_D09_F NXSI (Nsf Xylem Side ... 107 3e-021
gb|BM427692.1|BM427692 NXRV_001_F12_F NXRV (Nsf Xylem Root ... 107 3e-021
gb|BM492862.1|BM492862 NXRV_033_B06_F NXRV (Nsf Xylem Root ... 107 3e-021
gb|BM492999.1|BM492999 NXRV_034_F07_F NXRV (Nsf Xylem Root ... 107 3e-021
gb|BM903418.1|BM903418 NXRV_041_C02_F NXRV (Nsf Xylem Root ... 107 3e-021
gb|BQ634987.1|BQ634987 NXRV075_E07_F NXRV (Nsf Xylem Root w... 107 3e-021
gb|BQ654575.1|BQ654575 NXRV082_D12_F NXRV (Nsf Xylem Root w... 107 3e-021
gb|BQ654800.1|BQ654800 NXRV085_H02_F NXRV (Nsf Xylem Root w... 107 3e-021
gb|BQ698001.1|BQ698001 NXPV_063_D09_F NXPV (Nsf Xylem Plani... 107 3e-021
gb|BQ699323.1|BQ699323 NXRV126_D07_F NXRV (Nsf Xylem Root w... 107 3e-021
gb|BQ701366.1|BQ701366 NXSI_063_D02_F NXSI (Nsf Xylem Side ... 107 3e-021
gb|BX677032.1|BX677032 BX677032 RN Pinus pinaster cDNA clon... 107 3e-021
gb|BX677179.1|BX677179 BX677179 RN Pinus pinaster cDNA clon... 107 3e-021
gb|BX677180.1|BX677180 BX677180 RN Pinus pinaster cDNA clon... 107 3e-021
gb|BX678026.1|BX678026 BX678026 RN Pinus pinaster cDNA clon... 107 3e-021
gb|BX678346.1|BX678346 BX678346 RN Pinus pinaster cDNA clon... 107 3e-021
gb|BX678574.1|BX678574 BX678574 RS Pinus pinaster cDNA clon... 107 3e-021
gb|BX678621.1|BX678621 BX678621 RS Pinus pinaster cDNA clon... 107 3e-021
gb|BX678747.1|BX678747 BX678747 RS Pinus pinaster cDNA clon... 107 3e-021
gb|BX679179.1|BX679179 BX679179 RS Pinus pinaster cDNA clon... 107 3e-021
gb|BX679319.1|BX679319 BX679319 RS Pinus pinaster cDNA clon... 107 3e-021
gb|BX679355.1|BX679355 BX679355 RS Pinus pinaster cDNA clon... 107 3e-021
gb|BX679838.1|BX679838 BX679838 RS Pinus pinaster cDNA clon... 107 3e-021
gb|BX682319.2|BX682319 BX682319 Pinus pinaster differenciat... 107 3e-021
gb|CR354735.1|CR354735 CR354735 Pinus pinaster differenciat... 107 3e-021
gb|CR392089.1|CR392089 CR392089 RN Pinus pinaster cDNA clon... 107 3e-021
gb|CR392106.1|CR392106 CR392106 RN Pinus pinaster cDNA clon... 107 3e-021
gb|CR392863.1|CR392863 CR392863 RN Pinus pinaster cDNA clon... 107 3e-021
gb|CR392938.1|CR392938 CR392938 RN Pinus pinaster cDNA clon... 107 3e-021
gb|CR393171.1|CR393171 CR393171 RN Pinus pinaster cDNA clon... 107 3e-021
gb|DN608483.1|DN608483 EST961533 Subtracted pine embryo lib... 107 3e-021
gb|DN608622.1|DN608622 EST961672 Subtracted pine embryo lib... 107 3e-021
gb|DN608812.1|DN608812 EST961862 Subtracted pine embryo lib... 107 3e-021
gb|DN612285.1|DN612285 EST965335 Subtracted pine embryo lib... 107 3e-021
gb|DN612961.1|DN612961 EST966011 Subtracted pine embryo lib... 107 3e-021
gb|DN627706.1|DN627706 EST978522 Subtracted pine embryo lib... 107 3e-021
gb|DN628465.1|DN628465 EST979281 Subtracted pine embryo lib... 107 3e-021
gb|DR068781.1|DR068781 RTDK1_2_G10.g1_A029 Roots, dark Pinu... 107 3e-021
gb|DR384256.1|DR384256 RTHG1_1_C07.b1_A029 Roots plus added... 107 3e-021
gb|DR384335.1|DR384335 RTHG1_1_C07.g1_A029 Roots plus added... 107 3e-021
gb|DR384652.1|DR384652 RTHG1_3_D09.g1_A029 Roots plus added... 107 3e-021
gb|DR387913.1|DR387913 RTHG1_25_B05.b1_A029 Roots plus adde... 107 3e-021
gb|DR691542.1|DR691542 EST1081629 Normalized pine embryo li... 107 3e-021
gb|DT628454.1|DT628454 EST1157203 Subtracted pine embryo li... 107 3e-021
gb|DT629733.1|DT629733 EST1156303 Subtracted pine embryo li... 107 3e-021
gb|BM428212.1|BM428212 NXRV_013_G12_F NXRV (Nsf Xylem Root ... 105 1e-020
gb|BX677202.1|BX677202 BX677202 RN Pinus pinaster cDNA clon... 105 1e-020
gb|BQ655921.1|BQ655921 NXRV100_H12_F NXRV (Nsf Xylem Root w... 103 5e-020
gb|AW011358.1|AW011358 ST19H01 Pine TriplEx shoot tip libra... 101 2e-019
gb|CD020922.1|CD020922 NXNV_093_F02_F Nsf Xylem Normal wood... 101 2e-019
gb|CR393957.1|CR393957 CR393957 RN Pinus pinaster cDNA clon... 100 7e-019
gb|BX255621.1|BX255621 BX255621 Pinus pinaster differenciat... 98 3e-018
gb|DR025229.1|DR025229 STRS1_70_H11.b1_A034 Shoot tip pitch... 98 3e-018
gb|DR097105.1|DR097105 STRR1_32_C03.g1_A033 Stem Response R... 98 3e-018
gb|BF517632.1|BF517632 NXSI_028_D05_F NXSI (Nsf Xylem Side ... 96 1e-017
gb|AW982088.1|AW982088 PC23F08 Pine TriplEx pollen cone lib... 94 5e-017
gb|BX249936.1|BX249936 BX249936 Pinus pinaster differenciat... 94 5e-017
gb|BX252674.1|BX252674 BX252674 Pinus pinaster differenciat... 94 5e-017
gb|BX254141.1|BX254141 BX254141 Pinus pinaster differenciat... 94 5e-017
gb|AW985176.1|AW985176 NXNV_133_H07_F Nsf Xylem Normal wood... 94 5e-017
gb|BE457961.1|BE457961 NXCI_008_D03_F NXCI (Nsf Xylem Compr... 94 5e-017
gb|BQ655682.1|BQ655682 NXRV097_G09_F NXRV (Nsf Xylem Root w... 94 5e-017
gb|BQ655894.1|BQ655894 NXRV100_F06_F NXRV (Nsf Xylem Root w... 94 5e-017
gb|BX784211.1|BX784211 BX784211 Pinus pinaster differenciat... 94 5e-017
gb|CR354640.1|CR354640 CR354640 Pinus pinaster differenciat... 94 5e-017
gb|CO175597.1|CO175597 NDL1_55_F05.g1_A029 Needles control ... 94 5e-017
gb|CD024328.1|CD024328 NXRV_040_B05_F NXRV (Nsf Xylem Root ... 92 2e-016
gb|CO162170.1|CO162170 FLD1_33_C12.g1_A029 Root flooded Pin... 92 2e-016
gb|CD025980.1|CD025980 NXSI_093_F02_F NXSI (Nsf Xylem Side ... 90 7e-016
gb|DR070028.1|DR070028 RTDK1_10_G09.g1_A029 Roots, dark Pin... 90 7e-016
gb|DT636185.1|DT636185 EST1151116 Normalized pine embryo li... 90 7e-016
emb|AJ309093.1|PPI309093 Pinus pinaster partial mRNA for pu... 90 7e-016
gb|AW225713.1|AW225713 ST70H02 Pine TriplEx shoot tip libra... 88 3e-015
gb|BE049664.1|BE049664 NXNV_069_G10_F Nsf Xylem Normal wood... 86 1e-014
gb|BE049665.1|BE049665 NXNV_069_H06_F Nsf Xylem Normal wood... 86 1e-014
gb|CD025369.1|CD025369 NXSI_048_B03_F NXSI (Nsf Xylem Side ... 86 1e-014
gb|CD023648.1|CD023648 NXRV_004_F04_F NXRV (Nsf Xylem Root ... 82 2e-013
gb|DR690595.1|DR690595 EST1080681 Normalized pine embryo li... 82 2e-013
dbj|BD235995.1| Materials and method for modification of pl... 82 2e-013
gb|BE049691.1|BE049691 NXNV_140_H06_F Nsf Xylem Normal wood... 80 7e-013
dbj|BD236026.1| Materials and method for modification of pl... 80 7e-013
gb|DR017070.1|DR017070 STRS1_13_H07.g1_A034 Shoot tip pitch... 78 3e-012
gb|AW289862.1|AW289862 NXNV007B04F Nsf Xylem Normal wood Ve... 76 1e-011
gb|CD026523.1|CD026523 NXNV007B04 Nsf Xylem Normal wood Ver... 76 1e-011
gb|CD017332.1|CD017332 NXCI_109_H06_F NXCI (Nsf Xylem Compr... 74 4e-011
gb|CO164697.1|CO164697 FLD1_49_E08.g1_A029 Root flooded Pin... 74 4e-011
gb|DR068789.1|DR068789 RTDK1_2_H10.g1_A029 Roots, dark Pinu... 74 4e-011
gb|DR079060.1|DR079060 RTFEPL1_8_E10.g1_A029 Roots plus add... 74 4e-011
gb|DR079650.1|DR079650 RTFEPL1_12_D08.g1_A029 Roots plus ad... 74 4e-011
gb|DR384947.1|DR384947 RTHG1_5_D12.g1_A029 Roots plus added... 74 4e-011
gb|BX678706.1|BX678706 BX678706 RS Pinus pinaster cDNA clon... 72 2e-010
gb|DT636830.1|DT636830 EST1151761 Normalized pine embryo li... 70 7e-010
gb|CD021860.1|CD021860 NXNV_165_H10_F Nsf Xylem Normal wood... 66 1e-008
dbj|BD236460.1| Materials and method for modification of pl... 66 1e-008
gb|BF517565.1|BF517565 NXSI_026_A07_F NXSI (Nsf Xylem Side ... 64 4e-008
gb|AA739540.1|AA739540 305 PtIFG2 Pinus taeda cDNA clone 85... 62 2e-007
gb|AI784896.1|AI784896 1259 PtIFG2 Pinus taeda cDNA clone 8... 62 2e-007
gb|AW042758.1|AW042758 ST25A09 Pine TriplEx shoot tip libra... 62 2e-007
gb|CX648217.1|CX648217 COLD1_27_F07.b1_A029 Root cold Pinus... 56 1e-005
gb|CX648298.1|CX648298 COLD1_27_F07.g1_A029 Root cold Pinus... 56 1e-005
gb|DR095933.1|DR095933 STRR1_24_D06.g1_A033 Stem Response R... 56 1e-005
gb|DR691954.1|DR691954 EST1082041 Normalized pine embryo li... 54 4e-005
gb|DT636949.1|DT636949 EST1151880 Normalized pine embryo li... 54 4e-005
gb|BF517003.1|BF517003 NXSI_007_H12_F NXSI (Nsf Xylem Side ... 52 2e-004
gb|BQ654690.1|BQ654690 NXRV084_D04_F NXRV (Nsf Xylem Root w... 52 2e-004
gb|CV033800.1|CV033800 RTNACL1_36_E06.g1_A029 Roots plus ad... 52 2e-004
gb|DR385600.1|DR385600 RTHG1_9_E02.g1_A029 Roots plus added... 50 6e-004
gb|DR691886.1|DR691886 EST1081973 Normalized pine embryo li... 50 6e-004
gb|DR077969.1|DR077969 RTFEPL1_1_C11.b1_A029 Roots plus add... 48 0.002
dbj|BD236025.1| Materials and method for modification of pl... 48 0.002
gb|AW010596.1|AW010596 ST08F03 Pine TriplEx shoot tip libra... 46 0.010
gb|CO163958.1|CO163958 FLD1_44_H06.g1_A029 Root flooded Pin... 46 0.010
dbj|BD235994.1| Materials and method for modification of pl... 44 0.038
gb|AA556181.1|AA556181 36 Loblolly pine N Pinus taeda cDNA ... 42 0.15
gb|CO367141.1|CO367141 RTK1_32_A08.g1_A029 Roots minus pota... 42 0.15
>gb|BX255440.1|BX255440 BX255440 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP005G10 similar to SUCROSE SYNTHASE, mRNA
sequence
Length = 603
Score = 135 bits (68), Expect = 1e-029
Identities = 179/216 (82%)
Strand = Plus / Plus
Query: 1448 taccacttctcttgccagttcacagctgaccttattgccatgaaccacaccgatttcatc 1507
|||||||||||||||||||| || || || || ||||| ||||| || | ||||||||
Sbjct: 163 taccacttctcttgccagtttactgcagatctaattgcaatgaatcatgcagatttcatt 222
Query: 1508 atcaccagcacattccaagaaatcgcgggaagcaaggacaccgtggggcagtacgagtcc 1567
||||| ||||||| ||||| || || ||||| ||||| ||||| || ||||| || |
Sbjct: 223 atcacaagcacatatcaagagattgcaggaagtaaggataccgttggacagtatgaaagc 282
Query: 1568 cacatcgcgttcactcttcctgggctctaccgtgtcgtccatggcatcgatgttttcgat 1627
|||| ||| ||||| |||||||| ||||||||||| || ||||| || |||||||| |||
Sbjct: 283 cacaccgctttcacccttcctggtctctaccgtgtggttcatggaattgatgtttttgat 342
Query: 1628 cccaagttcaacattgtctctcctggagcagacatg 1663
||||| ||||||||||| || |||||||||||||||
Sbjct: 343 cccaaattcaacattgtttcccctggagcagacatg 378
Score = 52.0 bits (26), Expect = 2e-004
Identities = 41/46 (89%)
Strand = Plus / Plus
Query: 1365 tcactcagtgtaccatcgctcatgccttggagaaaaccaaataccc 1410
|||||||||| | ||| || |||||||||||||| |||||||||||
Sbjct: 80 tcactcagtgcaacatagcccatgccttggagaagaccaaataccc 125
>gb|CF666893.1|CF666893 RTCNT1_26_G09.g1_A029 Root control Pinus taeda cDNA clone
RTCNT1_26_G09_A029 5', mRNA sequence
Length = 792
Score = 135 bits (68), Expect = 1e-029
Identities = 179/216 (82%)
Strand = Plus / Plus
Query: 1448 taccacttctcttgccagttcacagctgaccttattgccatgaaccacaccgatttcatc 1507
|||||||||||||||||||| || || || || ||||| ||||| || | ||||||||
Sbjct: 557 taccacttctcttgccagtttactgcagatctaattgcaatgaatcatgcagatttcatt 616
Query: 1508 atcaccagcacattccaagaaatcgcgggaagcaaggacaccgtggggcagtacgagtcc 1567
||||| ||||||| ||||| || || ||||| ||||| ||||| || ||||| || |
Sbjct: 617 atcacaagcacatatcaagagattgcaggaagtaaggataccgttggacagtatgaaagc 676
Query: 1568 cacatcgcgttcactcttcctgggctctaccgtgtcgtccatggcatcgatgttttcgat 1627
|||| ||| ||||| |||||||| ||||||||||| || ||||| || |||||||| |||
Sbjct: 677 cacaccgctttcacccttcctggtctctaccgtgtggttcatggaattgatgtttttgat 736
Query: 1628 cccaagttcaacattgtctctcctggagcagacatg 1663
||||| ||||||||||| || |||||||||||||||
Sbjct: 737 cccaaattcaacattgtttcccctggagcagacatg 772
Score = 52.0 bits (26), Expect = 2e-004
Identities = 53/62 (85%)
Strand = Plus / Plus
Query: 971 gacactggcggtcaggttgtgtacattctggatcaggtccgtgctttggagaatgagatg 1030
|||||||| || ||||||||||| || || ||||| || ||||| ||||||||||| |||
Sbjct: 80 gacactggtggacaggttgtgtatatacttgatcaagttcgtgcattggagaatgaaatg 139
Query: 1031 ct 1032
||
Sbjct: 140 ct 141
Score = 44.1 bits (22), Expect = 0.038
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 1385 catgccttggagaaaaccaaataccc 1410
|||||||||||||| |||||||||||
Sbjct: 494 catgccttggagaagaccaaataccc 519
>gb|CX713086.1|CX713086 RTPQ1_6_H09.g1_A032 Roots treated with paraquat Pinus taeda cDNA
clone RTPQ1_6_H09_A032 5', mRNA sequence
Length = 829
Score = 135 bits (68), Expect = 1e-029
Identities = 179/216 (82%)
Strand = Plus / Plus
Query: 1448 taccacttctcttgccagttcacagctgaccttattgccatgaaccacaccgatttcatc 1507
|||||||||||||||||||| || || || || ||||| ||||| || | ||||||||
Sbjct: 75 taccacttctcttgccagtttactgcagatctaattgcaatgaatcatgcagatttcatt 134
Query: 1508 atcaccagcacattccaagaaatcgcgggaagcaaggacaccgtggggcagtacgagtcc 1567
||||| ||||||| ||||| || || ||||| ||||| ||||| || ||||| || |
Sbjct: 135 atcacaagcacatatcaagagattgcaggaagtaaggataccgttggacagtatgaaagc 194
Query: 1568 cacatcgcgttcactcttcctgggctctaccgtgtcgtccatggcatcgatgttttcgat 1627
|||| ||| ||||| |||||||| ||||||||||| || ||||| || |||||||| |||
Sbjct: 195 cacaccgctttcacccttcctggtctctaccgtgtggttcatggaattgatgtttttgat 254
Query: 1628 cccaagttcaacattgtctctcctggagcagacatg 1663
||||| ||||||||||| || |||||||||||||||
Sbjct: 255 cccaaattcaacattgtttcccctggagcagacatg 290
Score = 44.1 bits (22), Expect = 0.038
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 1385 catgccttggagaaaaccaaataccc 1410
|||||||||||||| |||||||||||
Sbjct: 12 catgccttggagaagaccaaataccc 37
>gb|BX784163.1|BX784163 BX784163 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone 130A08 similar to Sucrose synthase (EC
2.4.1.13), mRNA sequence
Length = 658
Score = 129 bits (65), Expect = 8e-028
Identities = 178/216 (82%)
Strand = Plus / Plus
Query: 1448 taccacttctcttgccagttcacagctgaccttattgccatgaaccacaccgatttcatc 1507
|||||||||||||||||||| || || || || ||||| ||||| || | ||||||||
Sbjct: 387 taccacttctcttgccagtttactgcagatctaattgcaatgaatcatgcagatttcatt 446
Query: 1508 atcaccagcacattccaagaaatcgcgggaagcaaggacaccgtggggcagtacgagtcc 1567
||||| ||||||| || || || || ||||| ||||| ||||| || ||||| || |
Sbjct: 447 atcacaagcacatatcangagattgcaggaagtaaggataccgttggacagtatgaaagc 506
Query: 1568 cacatcgcgttcactcttcctgggctctaccgtgtcgtccatggcatcgatgttttcgat 1627
|||| ||| ||||| |||||||| ||||||||||| || ||||| || |||||||| |||
Sbjct: 507 cacaccgctttcacccttcctggtctctaccgtgtggttcatggaattgatgtttttgat 566
Query: 1628 cccaagttcaacattgtctctcctggagcagacatg 1663
||||| ||||||||||| || |||||||||||||||
Sbjct: 567 cccaaattcaacattgtttcccctggagcagacatg 602
Score = 52.0 bits (26), Expect = 2e-004
Identities = 41/46 (89%)
Strand = Plus / Plus
Query: 1365 tcactcagtgtaccatcgctcatgccttggagaaaaccaaataccc 1410
|||||||||| | ||| || |||||||||||||| |||||||||||
Sbjct: 304 tcactcagtgcaacatagcccatgccttggagaagaccaaataccc 349
>gb|CO159567.1|CO159567 FLD1_14_H08.b1_A029 Root flooded Pinus taeda cDNA clone
FLD1_14_H08_A029 3', mRNA sequence
Length = 824
Score = 127 bits (64), Expect = 3e-027
Identities = 178/216 (82%)
Strand = Plus / Minus
Query: 1448 taccacttctcttgccagttcacagctgaccttattgccatgaaccacaccgatttcatc 1507
|||||||||||||||||||| || || || || ||||| ||||| || | ||||||||
Sbjct: 373 taccacttctcttgccagtttactgcagatctaattgcaatgaatcatgcagatttcatt 314
Query: 1508 atcaccagcacattccaagaaatcgcgggaagcaaggacaccgtggggcagtacgagtcc 1567
||||| ||||||| ||||| || || ||||| ||||| ||||| || ||||| || |
Sbjct: 313 atcacaagcacatatcaagagattgcaggaagtaaggataccgttggacagtatgaaagc 254
Query: 1568 cacatcgcgttcactcttcctgggctctaccgtgtcgtccatggcatcgatgttttcgat 1627
|||| || ||||| |||||||| ||||||||||| || ||||| || |||||||| |||
Sbjct: 253 cacactgctttcacccttcctggtctctaccgtgtggttcatggaattgatgtttttgat 194
Query: 1628 cccaagttcaacattgtctctcctggagcagacatg 1663
||||| ||||||||||| || |||||||||||||||
Sbjct: 193 cccaaattcaacattgtttcccctggagcagacatg 158
Score = 46.1 bits (23), Expect = 0.010
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 1368 ctcagtgtaccatcgctcatgccttggagaaaaccaaataccc 1410
||||||| | ||| || |||||||||||||| |||||||||||
Sbjct: 453 ctcagtgcaacatagcccatgccttggagaagaccaaataccc 411
>gb|AW290086.1|AW290086 NXNV010B09F Nsf Xylem Normal wood Vertical Pinus taeda cDNA clone
NXNV010B09 5', mRNA sequence
Length = 433
Score = 113 bits (57), Expect = 5e-023
Identities = 72/77 (93%)
Strand = Plus / Plus
Query: 2869 atgagggccaagtggaagaagaagcgcatgaggaggctcaagaggaagcgcagaaagatg 2928
|||||||||||||||||||||||||| |||||||||||||| ||||||||||| ||||||
Sbjct: 53 atgagggccaagtggaagaagaagcgaatgaggaggctcaaaaggaagcgcaggaagatg 112
Query: 2929 aggcagagatccaagta 2945
|| |||||||| |||||
Sbjct: 113 agacagagatctaagta 129
>gb|AW290515.1|AW290515 NXNV027H08F Nsf Xylem Normal wood Vertical Pinus taeda cDNA clone
NXNV027H08 5', mRNA sequence
Length = 487
Score = 113 bits (57), Expect = 5e-023
Identities = 72/77 (93%)
Strand = Plus / Plus
Query: 2869 atgagggccaagtggaagaagaagcgcatgaggaggctcaagaggaagcgcagaaagatg 2928
|||||||||||||||||||||||||| |||||||||||||| ||||||||||| ||||||
Sbjct: 47 atgagggccaagtggaagaagaagcgaatgaggaggctcaaaaggaagcgcaggaagatg 106
Query: 2929 aggcagagatccaagta 2945
|| |||||||| |||||
Sbjct: 107 agacagagatctaagta 123
>gb|AW981582.1|AW981582 PC14C11 Pine TriplEx pollen cone library Pinus taeda cDNA clone
PC14C11, mRNA sequence
Length = 523
Score = 113 bits (57), Expect = 5e-023
Identities = 72/77 (93%)
Strand = Plus / Plus
Query: 2869 atgagggccaagtggaagaagaagcgcatgaggaggctcaagaggaagcgcagaaagatg 2928
|||||||||||||||||||||||||| |||||||||||||| ||||||||||| ||||||
Sbjct: 77 atgagggccaagtggaagaagaagcgaatgaggaggctcaaaaggaagcgcaggaagatg 136
Query: 2929 aggcagagatccaagta 2945
|| |||||||| |||||
Sbjct: 137 agacagagatctaagta 153
>gb|AW981682.1|AW981682 PC15D12 Pine TriplEx pollen cone library Pinus taeda cDNA clone
PC15D12, mRNA sequence
Length = 587
Score = 113 bits (57), Expect = 5e-023
Identities = 72/77 (93%)
Strand = Plus / Plus
Query: 2869 atgagggccaagtggaagaagaagcgcatgaggaggctcaagaggaagcgcagaaagatg 2928
|||||||||||||||||||||||||| |||||||||||||| ||||||||||| ||||||
Sbjct: 133 atgagggccaagtggaagaagaagcgaatgaggaggctcaaaaggaagcgcaggaagatg 192
Query: 2929 aggcagagatccaagta 2945
|| |||||||| |||||
Sbjct: 193 agacagagatctaagta 209
>gb|BX248936.1|BX248936 BX248936 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP002H05, mRNA sequence
Length = 539
Score = 113 bits (57), Expect = 5e-023
Identities = 72/77 (93%)
Strand = Plus / Plus
Query: 2869 atgagggccaagtggaagaagaagcgcatgaggaggctcaagaggaagcgcagaaagatg 2928
|||||||||||||||||||||||||| |||||||||||||| ||||||||||| ||||||
Sbjct: 64 atgagggccaagtggaagaagaagcgaatgaggaggctcaaaaggaagcgcaggaagatg 123
Query: 2929 aggcagagatccaagta 2945
|| |||||||| |||||
Sbjct: 124 agacagagatctaagta 140
>gb|BF777472.1|BF777472 NXSI_069_A02_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_069_A02 5', mRNA sequence
Length = 444
Score = 113 bits (57), Expect = 5e-023
Identities = 72/77 (93%)
Strand = Plus / Plus
Query: 2869 atgagggccaagtggaagaagaagcgcatgaggaggctcaagaggaagcgcagaaagatg 2928
|||||||||||||||||||||||||| |||||||||||||| ||||||||||| ||||||
Sbjct: 43 atgagggccaagtggaagaagaagcgaatgaggaggctcaaaaggaagcgcaggaagatg 102
Query: 2929 aggcagagatccaagta 2945
|| |||||||| |||||
Sbjct: 103 agacagagatctaagta 119
>gb|BF778753.1|BF778753 NXSI_086_F09_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_086_F09 5', mRNA sequence
Length = 450
Score = 113 bits (57), Expect = 5e-023
Identities = 72/77 (93%)
Strand = Plus / Plus
Query: 2869 atgagggccaagtggaagaagaagcgcatgaggaggctcaagaggaagcgcagaaagatg 2928
|||||||||||||||||||||||||| |||||||||||||| ||||||||||| ||||||
Sbjct: 43 atgagggccaagtggaagaagaagcgaatgaggaggctcaaaaggaagcgcaggaagatg 102
Query: 2929 aggcagagatccaagta 2945
|| |||||||| |||||
Sbjct: 103 agacagagatctaagta 119
>gb|BG040013.1|BG040013 NXSI_105_D08_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_105_D08 5' similar to Arabidopsis thaliana
sequence At4g02280 putative sucrose synthetase see
http://mips.gsf.de/proj/thal/db/index.html, mRNA sequence
Length = 528
Score = 113 bits (57), Expect = 5e-023
Identities = 111/129 (86%)
Strand = Plus / Plus
Query: 1535 ggaagcaaggacaccgtggggcagtacgagtcccacatcgcgttcactcttcctgggctc 1594
||||||||||| || || || |||||||| ||||| || ||||| |||||||| |||
Sbjct: 20 ggaagcaaggatactgtcggacagtacgaaagccacactgctttcacccttcctggtctc 79
Query: 1595 taccgtgtcgtccatggcatcgatgttttcgatcccaagttcaacattgtctctcctgga 1654
|||||||| || ||||| || |||||||| |||||||||||||||||||| |||||||||
Sbjct: 80 taccgtgtggtacatggaattgatgtttttgatcccaagttcaacattgtttctcctgga 139
Query: 1655 gcagacatg 1663
|||||||||
Sbjct: 140 gcagacatg 148
>gb|BQ701080.1|BQ701080 NXRV115_C12_F NXRV (Nsf Xylem Root wood Vertical) Pinus taeda cDNA
clone NXRV115_C12 5', mRNA sequence
Length = 609
Score = 113 bits (57), Expect = 5e-023
Identities = 72/77 (93%)
Strand = Plus / Plus
Query: 2869 atgagggccaagtggaagaagaagcgcatgaggaggctcaagaggaagcgcagaaagatg 2928
|||||||||||||||||||||||||| |||||||||||||| ||||||||||| ||||||
Sbjct: 110 atgagggccaagtggaagaagaagcgaatgaggaggctcaaaaggaagcgcaggaagatg 169
Query: 2929 aggcagagatccaagta 2945
|| |||||||| |||||
Sbjct: 170 agacagagatctaagta 186
>gb|CD026725.1|CD026725 NXNV010B09 Nsf Xylem Normal wood Vertical Pinus taeda cDNA clone
NXNV010B09 5', mRNA sequence
Length = 433
Score = 113 bits (57), Expect = 5e-023
Identities = 72/77 (93%)
Strand = Plus / Plus
Query: 2869 atgagggccaagtggaagaagaagcgcatgaggaggctcaagaggaagcgcagaaagatg 2928
|||||||||||||||||||||||||| |||||||||||||| ||||||||||| ||||||
Sbjct: 53 atgagggccaagtggaagaagaagcgaatgaggaggctcaaaaggaagcgcaggaagatg 112
Query: 2929 aggcagagatccaagta 2945
|| |||||||| |||||
Sbjct: 113 agacagagatctaagta 129
>gb|CD027175.1|CD027175 NXNV027H08 Nsf Xylem Normal wood Vertical Pinus taeda cDNA clone
NXNV027H08 5', mRNA sequence
Length = 487
Score = 113 bits (57), Expect = 5e-023
Identities = 72/77 (93%)
Strand = Plus / Plus
Query: 2869 atgagggccaagtggaagaagaagcgcatgaggaggctcaagaggaagcgcagaaagatg 2928
|||||||||||||||||||||||||| |||||||||||||| ||||||||||| ||||||
Sbjct: 47 atgagggccaagtggaagaagaagcgaatgaggaggctcaaaaggaagcgcaggaagatg 106
Query: 2929 aggcagagatccaagta 2945
|| |||||||| |||||
Sbjct: 107 agacagagatctaagta 123
>gb|CF397049.1|CF397049 RTDS2_26_F06.b1_A021 Drought-stressed loblolly pine roots DS2 Pinus
taeda cDNA clone RTDS2_26_F06_A021 3', mRNA sequence
Length = 457
Score = 113 bits (57), Expect = 5e-023
Identities = 72/77 (93%)
Strand = Plus / Plus
Query: 2869 atgagggccaagtggaagaagaagcgcatgaggaggctcaagaggaagcgcagaaagatg 2928
|||||||||||||||||||||||||| |||||||||||||| ||||||||||| ||||||
Sbjct: 84 atgagggccaagtggaagaagaagcgaatgaggaggctcaaaaggaagcgcaggaagatg 143
Query: 2929 aggcagagatccaagta 2945
|| |||||||| |||||
Sbjct: 144 agacagagatctaagta 160
>gb|CF397153.1|CF397153 RTDS2_26_F06.g1_A021 Drought-stressed loblolly pine roots DS2 Pinus
taeda cDNA clone RTDS2_26_F06_A021 5', mRNA sequence
Length = 371
Score = 113 bits (57), Expect = 5e-023
Identities = 72/77 (93%)
Strand = Plus / Plus
Query: 2869 atgagggccaagtggaagaagaagcgcatgaggaggctcaagaggaagcgcagaaagatg 2928
|||||||||||||||||||||||||| |||||||||||||| ||||||||||| ||||||
Sbjct: 41 atgagggccaagtggaagaagaagcgaatgaggaggctcaaaaggaagcgcaggaagatg 100
Query: 2929 aggcagagatccaagta 2945
|| |||||||| |||||
Sbjct: 101 agacagagatctaagta 117
>gb|BX678727.1|BX678727 BX678727 RS Pinus pinaster cDNA clone RS14C12, mRNA sequence
Length = 474
Score = 113 bits (57), Expect = 5e-023
Identities = 72/77 (93%)
Strand = Plus / Plus
Query: 2869 atgagggccaagtggaagaagaagcgcatgaggaggctcaagaggaagcgcagaaagatg 2928
|||||||||||||||||||||||||| |||||||||||||| ||||||||||| ||||||
Sbjct: 56 atgagggccaagtggaagaagaagcgaatgaggaggctcaaaaggaagcgcaggaagatg 115
Query: 2929 aggcagagatccaagta 2945
|| |||||||| |||||
Sbjct: 116 agacagagatctaagta 132
>gb|BX682195.1|BX682195 BX682195 RS Pinus pinaster cDNA clone RS73D10, mRNA sequence
Length = 504
Score = 113 bits (57), Expect = 5e-023
Identities = 72/77 (93%)
Strand = Plus / Plus
Query: 2869 atgagggccaagtggaagaagaagcgcatgaggaggctcaagaggaagcgcagaaagatg 2928
|||||||||||||||||||||||||| |||||||||||||| ||||||||||| ||||||
Sbjct: 55 atgagggccaagtggaagaagaagcgaatgaggaggctcaaaaggaagcgcaggaagatg 114
Query: 2929 aggcagagatccaagta 2945
|| |||||||| |||||
Sbjct: 115 agacagagatctaagta 131
>gb|CR394201.1|CR394201 CR394201 RN Pinus pinaster cDNA clone RN75B03, mRNA sequence
Length = 427
Score = 113 bits (57), Expect = 5e-023
Identities = 72/77 (93%)
Strand = Plus / Plus
Query: 2869 atgagggccaagtggaagaagaagcgcatgaggaggctcaagaggaagcgcagaaagatg 2928
|||||||||||||||||||||||||| |||||||||||||| ||||||||||| ||||||
Sbjct: 48 atgagggccaagtggaagaagaagcgaatgaggaggctcaaaaggaagcgcaggaagatg 107
Query: 2929 aggcagagatccaagta 2945
|| |||||||| |||||
Sbjct: 108 agacagagatctaagta 124
>gb|CO201518.1|CO201518 RTCNT2_6_G04.b1_A029 Root control 2 (late) Pinus taeda cDNA clone
RTCNT2_6_G04_A029 3', mRNA sequence
Length = 586
Score = 113 bits (57), Expect = 5e-023
Identities = 72/77 (93%)
Strand = Plus / Plus
Query: 2869 atgagggccaagtggaagaagaagcgcatgaggaggctcaagaggaagcgcagaaagatg 2928
|||||||||||||||||||||||||| |||||||||||||| ||||||||||| ||||||
Sbjct: 74 atgagggccaagtggaagaagaagcgaatgaggaggctcaaaaggaagcgcaggaagatg 133
Query: 2929 aggcagagatccaagta 2945
|| |||||||| |||||
Sbjct: 134 agacagagatctaagta 150
>gb|CO201593.1|CO201593 RTCNT2_6_G04.g1_A029 Root control 2 (late) Pinus taeda cDNA clone
RTCNT2_6_G04_A029 5', mRNA sequence
Length = 580
Score = 113 bits (57), Expect = 5e-023
Identities = 72/77 (93%)
Strand = Plus / Plus
Query: 2869 atgagggccaagtggaagaagaagcgcatgaggaggctcaagaggaagcgcagaaagatg 2928
|||||||||||||||||||||||||| |||||||||||||| ||||||||||| ||||||
Sbjct: 51 atgagggccaagtggaagaagaagcgaatgaggaggctcaaaaggaagcgcaggaagatg 110
Query: 2929 aggcagagatccaagta 2945
|| |||||||| |||||
Sbjct: 111 agacagagatctaagta 127
>gb|CV032026.1|CV032026 RTNACL1_5_F02.b1_A029 Roots plus added NaCl Pinus taeda cDNA clone
RTNACL1_5_F02_A029 3', mRNA sequence
Length = 605
Score = 113 bits (57), Expect = 5e-023
Identities = 72/77 (93%)
Strand = Plus / Plus
Query: 2869 atgagggccaagtggaagaagaagcgcatgaggaggctcaagaggaagcgcagaaagatg 2928
|||||||||||||||||||||||||| |||||||||||||| ||||||||||| ||||||
Sbjct: 151 atgagggccaagtggaagaagaagcgaatgaggaggctcaaaaggaagcgcaggaagatg 210
Query: 2929 aggcagagatccaagta 2945
|| |||||||| |||||
Sbjct: 211 agacagagatctaagta 227
>gb|CV032084.1|CV032084 RTNACL1_5_F02.g2_A029 Roots plus added NaCl Pinus taeda cDNA clone
RTNACL1_5_F02_A029 5', mRNA sequence
Length = 565
Score = 113 bits (57), Expect = 5e-023
Identities = 72/77 (93%)
Strand = Plus / Plus
Query: 2869 atgagggccaagtggaagaagaagcgcatgaggaggctcaagaggaagcgcagaaagatg 2928
|||||||||||||||||||||||||| |||||||||||||| ||||||||||| ||||||
Sbjct: 120 atgagggccaagtggaagaagaagcgaatgaggaggctcaaaaggaagcgcaggaagatg 179
Query: 2929 aggcagagatccaagta 2945
|| |||||||| |||||
Sbjct: 180 agacagagatctaagta 196
>gb|CX650493.1|CX650493 COLD1_46_C07.b1_A029 Root cold Pinus taeda cDNA clone
COLD1_46_C07_A029 3', mRNA sequence
Length = 725
Score = 113 bits (57), Expect = 5e-023
Identities = 72/77 (93%)
Strand = Plus / Minus
Query: 2869 atgagggccaagtggaagaagaagcgcatgaggaggctcaagaggaagcgcagaaagatg 2928
|||||||||||||||||||||||||| |||||||||||||| ||||||||||| ||||||
Sbjct: 449 atgagggccaagtggaagaagaagcgaatgaggaggctcaaaaggaagcgcaggaagatg 390
Query: 2929 aggcagagatccaagta 2945
|| |||||||| |||||
Sbjct: 389 agacagagatctaagta 373
>gb|CX650566.1|CX650566 COLD1_46_C07.g1_A029 Root cold Pinus taeda cDNA clone
COLD1_46_C07_A029 5', mRNA sequence
Length = 711
Score = 113 bits (57), Expect = 5e-023
Identities = 72/77 (93%)
Strand = Plus / Minus
Query: 2869 atgagggccaagtggaagaagaagcgcatgaggaggctcaagaggaagcgcagaaagatg 2928
|||||||||||||||||||||||||| |||||||||||||| ||||||||||| ||||||
Sbjct: 438 atgagggccaagtggaagaagaagcgaatgaggaggctcaaaaggaagcgcaggaagatg 379
Query: 2929 aggcagagatccaagta 2945
|| |||||||| |||||
Sbjct: 378 agacagagatctaagta 362
>gb|DR047965.1|DR047965 RTBOR1_5_F09.g2_A029 Roots plus added boron Pinus taeda cDNA clone
RTBOR1_5_F09_A029 5', mRNA sequence
Length = 703
Score = 113 bits (57), Expect = 5e-023
Identities = 72/77 (93%)
Strand = Plus / Plus
Query: 2869 atgagggccaagtggaagaagaagcgcatgaggaggctcaagaggaagcgcagaaagatg 2928
|||||||||||||||||||||||||| |||||||||||||| ||||||||||| ||||||
Sbjct: 66 atgagggccaagtggaagaagaagcgaatgaggaggctcaaaaggaagcgcaggaagatg 125
Query: 2929 aggcagagatccaagta 2945
|| |||||||| |||||
Sbjct: 126 agacagagatctaagta 142
>gb|DR095003.1|DR095003 STRR1_18_E02.b1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_18_E02_A033 3', mRNA sequence
Length = 560
Score = 113 bits (57), Expect = 5e-023
Identities = 72/77 (93%)
Strand = Plus / Plus
Query: 2869 atgagggccaagtggaagaagaagcgcatgaggaggctcaagaggaagcgcagaaagatg 2928
|||||||||||||||||||||||||| |||||||||||||| ||||||||||| ||||||
Sbjct: 78 atgagggccaagtggaagaagaagcgaatgaggaggctcaaaaggaagcgcaggaagatg 137
Query: 2929 aggcagagatccaagta 2945
|| |||||||| |||||
Sbjct: 138 agacagagatctaagta 154
>gb|DR095082.1|DR095082 STRR1_18_E02.g1_A033 Stem Response Resistant Pinus taeda cDNA clone
STRR1_18_E02_A033 5', mRNA sequence
Length = 534
Score = 113 bits (57), Expect = 5e-023
Identities = 72/77 (93%)
Strand = Plus / Plus
Query: 2869 atgagggccaagtggaagaagaagcgcatgaggaggctcaagaggaagcgcagaaagatg 2928
|||||||||||||||||||||||||| |||||||||||||| ||||||||||| ||||||
Sbjct: 57 atgagggccaagtggaagaagaagcgaatgaggaggctcaaaaggaagcgcaggaagatg 116
Query: 2929 aggcagagatccaagta 2945
|| |||||||| |||||
Sbjct: 117 agacagagatctaagta 133
>gb|AW011269.1|AW011269 ST18H01 Pine TriplEx shoot tip library Pinus taeda cDNA clone
ST18H01, mRNA sequence
Length = 324
Score = 107 bits (54), Expect = 3e-021
Identities = 72/78 (92%)
Strand = Plus / Plus
Query: 2869 atgagggccaagtggaagaagaagcgcatgaggaggctcaagaggaagcgcagaaagatg 2928
|||||||||||||||||||||||||| |||||| | || ||||||||||| |||||||||
Sbjct: 66 atgagggccaagtggaagaagaagcgtatgaggcgtctgaagaggaagcggagaaagatg 125
Query: 2929 aggcagagatccaagtag 2946
||||||||||| ||||||
Sbjct: 126 aggcagagatctaagtag 143
>gb|AW056640.1|AW056640 ST54A12 Pine TriplEx shoot tip library Pinus taeda cDNA clone
ST54A12, mRNA sequence
Length = 389
Score = 107 bits (54), Expect = 3e-021
Identities = 72/78 (92%)
Strand = Plus / Plus
Query: 2869 atgagggccaagtggaagaagaagcgcatgaggaggctcaagaggaagcgcagaaagatg 2928
|||||||||||||||||||||||||| |||||| | || ||||||||||| |||||||||
Sbjct: 96 atgagggccaagtggaagaagaagcgtatgaggcgtctgaagaggaagcggagaaagatg 155
Query: 2929 aggcagagatccaagtag 2946
||||||||||| ||||||
Sbjct: 156 aggcagagatctaagtag 173
>gb|AW754660.1|AW754660 PC04G11 Pine TriplEx pollen cone library Pinus taeda cDNA clone
PC04G11, mRNA sequence
Length = 419
Score = 107 bits (54), Expect = 3e-021
Identities = 72/78 (92%)
Strand = Plus / Plus
Query: 2869 atgagggccaagtggaagaagaagcgcatgaggaggctcaagaggaagcgcagaaagatg 2928
|||||||||||||||||||||||||| |||||| | || ||||||||||| |||||||||
Sbjct: 85 atgagggccaagtggaagaagaagcgtatgaggcgtctgaagaggaagcggagaaagatg 144
Query: 2929 aggcagagatccaagtag 2946
||||||||||| ||||||
Sbjct: 145 aggcagagatctaagtag 162
>gb|AL750447.1|AL750447 AL750447 RN Pinus pinaster cDNA clone RN02F04 similar to RP L41, mRNA
sequence
Length = 431
Score = 107 bits (54), Expect = 3e-021
Identities = 72/78 (92%)
Strand = Plus / Plus
Query: 2869 atgagggccaagtggaagaagaagcgcatgaggaggctcaagaggaagcgcagaaagatg 2928
|||||||||||||||||||||||||| |||||| | || ||||||||||| |||||||||
Sbjct: 38 atgagggccaagtggaagaagaagcgtatgaggcgtctgaagaggaagcggagaaagatg 97
Query: 2929 aggcagagatccaagtag 2946
||||||||||| ||||||
Sbjct: 98 aggcagagatctaagtag 115
>gb|AL750458.1|AL750458 AL750458 RN Pinus pinaster cDNA clone RN02G03 similar to RP L41, mRNA
sequence
Length = 429
Score = 107 bits (54), Expect = 3e-021
Identities = 72/78 (92%)
Strand = Plus / Plus
Query: 2869 atgagggccaagtggaagaagaagcgcatgaggaggctcaagaggaagcgcagaaagatg 2928
|||||||||||||||||||||||||| |||||| | || ||||||||||| |||||||||
Sbjct: 38 atgagggccaagtggaagaagaagcgtatgaggcgtctgaagaggaagcggagaaagatg 97
Query: 2929 aggcagagatccaagtag 2946
||||||||||| ||||||
Sbjct: 98 aggcagagatctaagtag 115
>gb|AL750742.1|AL750742 AL750742 RN Pinus pinaster cDNA clone RN06G09 similar to RP L41, mRNA
sequence
Length = 423
Score = 107 bits (54), Expect = 3e-021
Identities = 72/78 (92%)
Strand = Plus / Plus
Query: 2869 atgagggccaagtggaagaagaagcgcatgaggaggctcaagaggaagcgcagaaagatg 2928
|||||||||||||||||||||||||| |||||| | || ||||||||||| |||||||||
Sbjct: 36 atgagggccaagtggaagaagaagcgtatgaggcgtctgaagaggaagcggagaaagatg 95
Query: 2929 aggcagagatccaagtag 2946
||||||||||| ||||||
Sbjct: 96 aggcagagatctaagtag 113
>gb|BX250085.1|BX250085 BX250085 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP032C03 similar to MINOR ALLERGEN ALT A 7,
mRNA sequence
Length = 499
Score = 107 bits (54), Expect = 3e-021
Identities = 72/78 (92%)
Strand = Plus / Minus
Query: 2869 atgagggccaagtggaagaagaagcgcatgaggaggctcaagaggaagcgcagaaagatg 2928
|||||||||||||||||||||||||| |||||| | || ||||||||||| |||||||||
Sbjct: 287 atgagggccaagtggaagaagaagcgtatgaggcgtctgaagaggaagcggagaaagatg 228
Query: 2929 aggcagagatccaagtag 2946
||||||||||| ||||||
Sbjct: 227 aggcagagatctaagtag 210
>gb|BX250870.1|BX250870 BX250870 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP042D01 similar to MINOR ALLERGEN ALT A 7,
mRNA sequence
Length = 433
Score = 107 bits (54), Expect = 3e-021
Identities = 72/78 (92%)
Strand = Plus / Plus
Query: 2869 atgagggccaagtggaagaagaagcgcatgaggaggctcaagaggaagcgcagaaagatg 2928
|||||||||||||||||||||||||| |||||| | || ||||||||||| |||||||||
Sbjct: 53 atgagggccaagtggaagaagaagcgtatgaggcgtctgaagaggaagcggagaaagatg 112
Query: 2929 aggcagagatccaagtag 2946
||||||||||| ||||||
Sbjct: 113 aggcagagatctaagtag 130
>gb|BX251404.1|BX251404 BX251404 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP049B10 similar to MINOR ALLERGEN ALT A 7,
mRNA sequence
Length = 356
Score = 107 bits (54), Expect = 3e-021
Identities = 72/78 (92%)
Strand = Plus / Plus
Query: 2869 atgagggccaagtggaagaagaagcgcatgaggaggctcaagaggaagcgcagaaagatg 2928
|||||||||||||||||||||||||| |||||| | || ||||||||||| |||||||||
Sbjct: 49 atgagggccaagtggaagaagaagcgtatgaggcgtctgaagaggaagcggagaaagatg 108
Query: 2929 aggcagagatccaagtag 2946
||||||||||| ||||||
Sbjct: 109 aggcagagatctaagtag 126
>gb|BX252858.1|BX252858 BX252858 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP071G12 similar to MINOR ALLERGEN ALT A 7,
mRNA sequence
Length = 362
Score = 107 bits (54), Expect = 3e-021
Identities = 72/78 (92%)
Strand = Plus / Plus
Query: 2869 atgagggccaagtggaagaagaagcgcatgaggaggctcaagaggaagcgcagaaagatg 2928
|||||||||||||||||||||||||| |||||| | || ||||||||||| |||||||||
Sbjct: 53 atgagggccaagtggaagaagaagcgtatgaggcgtctgaagaggaagcggagaaagatg 112
Query: 2929 aggcagagatccaagtag 2946
||||||||||| ||||||
Sbjct: 113 aggcagagatctaagtag 130
>gb|BX253347.1|BX253347 BX253347 Pinus pinaster differenciating xylem adult Pinus pinaster
cDNA clone PP081G11 similar to MINOR ALLERGEN ALT A 7,
mRNA sequence
Length = 347
Score = 107 bits (54), Expect = 3e-021
Identities = 72/78 (92%)
Strand = Plus / Plus
Query: 2869 atgagggccaagtggaagaagaagcgcatgaggaggctcaagaggaagcgcagaaagatg 2928
|||||||||||||||||||||||||| |||||| | || ||||||||||| |||||||||
Sbjct: 41 atgagggccaagtggaagaagaagcgtatgaggcgtctgaagaggaagcggagaaagatg 100
Query: 2929 aggcagagatccaagtag 2946
||||||||||| ||||||
Sbjct: 101 aggcagagatctaagtag 118
>gb|BE643713.1|BE643713 NXCI_043_E05_F NXCI (Nsf Xylem Compression wood Inclined) Pinus taeda
cDNA clone NXCI_043_E05 5', mRNA sequence
Length = 206
Score = 107 bits (54), Expect = 3e-021
Identities = 72/78 (92%)
Strand = Plus / Plus
Query: 2869 atgagggccaagtggaagaagaagcgcatgaggaggctcaagaggaagcgcagaaagatg 2928
|||||||||||||||||||||||||| |||||| | || ||||||||||| |||||||||
Sbjct: 38 atgagggccaagtggaagaagaagcgtatgaggcgtctgaagaggaagcggagaaagatg 97
Query: 2929 aggcagagatccaagtag 2946
||||||||||| ||||||
Sbjct: 98 aggcagagatctaagtag 115
>gb|BE643806.1|BE643806 NXCI_047_E02_F NXCI (Nsf Xylem Compression wood Inclined) Pinus taeda
cDNA clone NXCI_047_E02 5', mRNA sequence
Length = 331
Score = 107 bits (54), Expect = 3e-021
Identities = 72/78 (92%)
Strand = Plus / Plus
Query: 2869 atgagggccaagtggaagaagaagcgcatgaggaggctcaagaggaagcgcagaaagatg 2928
|||||||||||||||||||||||||| |||||| | || ||||||||||| |||||||||
Sbjct: 44 atgagggccaagtggaagaagaagcgtatgaggcgtctgaagaggaagcggagaaagatg 103
Query: 2929 aggcagagatccaagtag 2946
||||||||||| ||||||
Sbjct: 104 aggcagagatctaagtag 121
>gb|BE996971.1|BE996971 NXCI_093_E08_F NXCI (Nsf Xylem Compression wood Inclined) Pinus taeda
cDNA clone NXCI_093_E08 5', mRNA sequence
Length = 326
Score = 107 bits (54), Expect = 3e-021
Identities = 72/78 (92%)
Strand = Plus / Plus
Query: 2869 atgagggccaagtggaagaagaagcgcatgaggaggctcaagaggaagcgcagaaagatg 2928
|||||||||||||||||||||||||| |||||| | || ||||||||||| |||||||||
Sbjct: 45 atgagggccaagtggaagaagaagcgtatgaggcgtctgaagaggaagcggagaaagatg 104
Query: 2929 aggcagagatccaagtag 2946
||||||||||| ||||||
Sbjct: 105 aggcagagatctaagtag 122
>gb|BF220362.1|BF220362 NXCI_144_B09_F NXCI (Nsf Xylem Compression wood Inclined) Pinus taeda
cDNA clone NXCI_144_B09 5', mRNA sequence
Length = 344
Score = 107 bits (54), Expect = 3e-021
Identities = 72/78 (92%)
Strand = Plus / Plus
Query: 2869 atgagggccaagtggaagaagaagcgcatgaggaggctcaagaggaagcgcagaaagatg 2928
|||||||||||||||||||||||||| |||||| | || ||||||||||| |||||||||
Sbjct: 45 atgagggccaagtggaagaagaagcgtatgaggcgtctgaagaggaagcggagaaagatg 104
Query: 2929 aggcagagatccaagtag 2946
||||||||||| ||||||
Sbjct: 105 aggcagagatctaagtag 122
>gb|BF610039.1|BF610039 NXSI_054_A07_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_054_A07 5', mRNA sequence
Length = 344
Score = 107 bits (54), Expect = 3e-021
Identities = 72/78 (92%)
Strand = Plus / Plus
Query: 2869 atgagggccaagtggaagaagaagcgcatgaggaggctcaagaggaagcgcagaaagatg 2928
|||||||||||||||||||||||||| |||||| | || ||||||||||| |||||||||
Sbjct: 44 atgagggccaagtggaagaagaagcgtatgaggcgtctgaagaggaagcggagaaagatg 103
Query: 2929 aggcagagatccaagtag 2946
||||||||||| ||||||
Sbjct: 104 aggcagagatctaagtag 121
>gb|BF777253.1|BF777253 NXSI_067_A03_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_067_A03 5', mRNA sequence
Length = 374
Score = 107 bits (54), Expect = 3e-021
Identities = 72/78 (92%)
Strand = Plus / Plus
Query: 2869 atgagggccaagtggaagaagaagcgcatgaggaggctcaagaggaagcgcagaaagatg 2928
|||||||||||||||||||||||||| |||||| | || ||||||||||| |||||||||
Sbjct: 44 atgagggccaagtggaagaagaagcgtatgaggcgtctgaagaggaagcggagaaagatg 103
Query: 2929 aggcagagatccaagtag 2946
||||||||||| ||||||
Sbjct: 104 aggcagagatctaagtag 121
>gb|BF777914.1|BF777914 NXSI_078_E09_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_078_E09 5', mRNA sequence
Length = 328
Score = 107 bits (54), Expect = 3e-021
Identities = 72/78 (92%)
Strand = Plus / Plus
Query: 2869 atgagggccaagtggaagaagaagcgcatgaggaggctcaagaggaagcgcagaaagatg 2928
|||||||||||||||||||||||||| |||||| | || ||||||||||| |||||||||
Sbjct: 41 atgagggccaagtggaagaagaagcgtatgaggcgtctgaagaggaagcggagaaagatg 100
Query: 2929 aggcagagatccaagtag 2946
||||||||||| ||||||
Sbjct: 101 aggcagagatctaagtag 118
>gb|BF778583.1|BF778583 NXSI_088_D04_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_088_D04 5', mRNA sequence
Length = 374
Score = 107 bits (54), Expect = 3e-021
Identities = 72/78 (92%)
Strand = Plus / Plus
Query: 2869 atgagggccaagtggaagaagaagcgcatgaggaggctcaagaggaagcgcagaaagatg 2928
|||||||||||||||||||||||||| |||||| | || ||||||||||| |||||||||
Sbjct: 44 atgagggccaagtggaagaagaagcgtatgaggcgtctgaagaggaagcggagaaagatg 103
Query: 2929 aggcagagatccaagtag 2946
||||||||||| ||||||
Sbjct: 104 aggcagagatctaagtag 121
>gb|BG039238.1|BG039238 NXSI_096_F04_F NXSI (Nsf Xylem Side wood Inclined) Pinus taeda cDNA
clone NXSI_096_F04 5', mRNA sequence
Length = 320
Score = 107 bits (54), Expect = 3e-021
Identities = 72/78 (92%)
Strand = Plus / Plus
Query: 2869 atgagggccaagtggaagaagaagcgcatgaggaggctcaagaggaagcgcagaaagatg 2928
|||||||||||||||||||||||||| |||||| | || ||||||||||| |||||||||
Sbjct: 48 atgagggccaagtggaagaagaagcgtatgaggcgtctgaagaggaagcggagaaagatg 107
Query: 2929 aggcagagatccaagtag 2946
||||||||||| ||||||
Sbjct: 108 aggcagagatctaagtag 125
Database: Pinus_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:45 PM
Number of letters in database: 217,277,237
Number of sequences in database: 355,925
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 368,039
Number of Sequences: 355925
Number of extensions: 368039
Number of successful extensions: 104291
Number of sequences better than 0.5: 168
Number of HSP's better than 0.5 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 104034
Number of HSP's gapped (non-prelim): 254
length of query: 3445
length of database: 217,277,237
effective HSP length: 20
effective length of query: 3425
effective length of database: 210,158,737
effective search space: 719793674225
effective search space used: 719793674225
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)