BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QCT19a08.yg.2.1
(645 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AACV01011020.1| Oryza sativa (japonica cultivar-group) c... 375 e-101
ref|XM_476068.1| Oryza sativa (japonica cultivar-group), p... 375 e-101
ref|NT_107223.1| Oryza sativa (japonica cultivar-group) 375 e-101
gb|AC135425.3| Oryza sativa (japonica cultivar-group) chrom... 375 e-101
gb|CH401191.1| Oryza sativa (japonica cultivar-group) chrom... 375 e-101
gb|CM000142.1| Oryza sativa (japonica cultivar-group) chrom... 375 e-101
gb|AC130610.3| Oryza sativa (japonica cultivar-group) chrom... 375 e-101
dbj|AP008211.1| Oryza sativa (japonica cultivar-group) geno... 375 e-101
dbj|AK103199.1| Oryza sativa (japonica cultivar-group) cDNA... 212 2e-052
gb|AACV01000298.1| Oryza sativa (japonica cultivar-group) c... 212 2e-052
dbj|AP002524.2| Oryza sativa (japonica cultivar-group) geno... 212 2e-052
dbj|AP003118.2| Oryza sativa (japonica cultivar-group) geno... 212 2e-052
dbj|BA000010.8| Oryza sativa (japonica cultivar-group) geno... 212 2e-052
ref|NM_189545.1| Oryza sativa (japonica cultivar-group), p... 212 2e-052
ref|XM_550392.1| Oryza sativa (japonica cultivar-group), mRNA 212 2e-052
ref|NT_036312.3| Oryza sativa (japonica cultivar-group) 212 2e-052
gb|CH401164.1| Oryza sativa (japonica cultivar-group) chrom... 212 2e-052
gb|CM000138.1| Oryza sativa (japonica cultivar-group) chrom... 212 2e-052
dbj|AP008207.1| Oryza sativa (japonica cultivar-group) geno... 212 2e-052
gb|CB657603.1|CB657603 OSJNEc13B13.r OSJNEc Oryza sativa (j... 74 1e-010
dbj|AP004122.1| Oryza sativa (japonica cultivar-group) chro... 74 1e-010
dbj|AK064239.1| Oryza sativa (japonica cultivar-group) cDNA... 74 1e-010
dbj|AK105266.1| Oryza sativa (japonica cultivar-group) cDNA... 74 1e-010
dbj|AK105670.1| Oryza sativa (japonica cultivar-group) cDNA... 74 1e-010
dbj|AP005771.2| Oryza sativa (japonica cultivar-group) geno... 74 1e-010
dbj|AP005611.3| Oryza sativa (japonica cultivar-group) geno... 74 1e-010
gb|AC092076.7| Oryza sativa chromosome 3 BAC OSJNBb0021G19 ... 74 1e-010
dbj|AP005420.3| Oryza sativa (japonica cultivar-group) geno... 74 1e-010
dbj|AP003333.4| Oryza sativa (japonica cultivar-group) geno... 74 1e-010
dbj|AP003253.3| Oryza sativa (japonica cultivar-group) geno... 74 1e-010
gb|AACV01001725.1| Oryza sativa (japonica cultivar-group) c... 74 1e-010
gb|AACV01004635.1| Oryza sativa (japonica cultivar-group) c... 74 1e-010
gb|AACV01020014.1| Oryza sativa (japonica cultivar-group) c... 74 1e-010
ref|NM_192605.1| Oryza sativa (japonica cultivar-group), p... 74 1e-010
ref|XM_466115.1| Oryza sativa (japonica cultivar-group), mRNA 74 1e-010
ref|NT_079926.2| Oryza sativa (japonica cultivar-group) 74 1e-010
ref|NT_107084.1| Oryza sativa (japonica cultivar-group) 74 1e-010
ref|NT_107187.1| Oryza sativa (japonica cultivar-group) 74 1e-010
ref|NT_107180.1| Oryza sativa (japonica cultivar-group) 74 1e-010
gb|CH401242.1| Oryza sativa (japonica cultivar-group) chrom... 74 1e-010
gb|CH401170.1| Oryza sativa (japonica cultivar-group) chrom... 74 1e-010
gb|CH401166.1| Oryza sativa (japonica cultivar-group) chrom... 74 1e-010
gb|CM000146.1| Oryza sativa (japonica cultivar-group) chrom... 74 1e-010
gb|CM000139.1| Oryza sativa (japonica cultivar-group) chrom... 74 1e-010
dbj|AP008208.1| Oryza sativa (japonica cultivar-group) geno... 74 1e-010
dbj|AP008209.1| Oryza sativa (japonica cultivar-group) geno... 74 1e-010
dbj|AP008215.1| Oryza sativa (japonica cultivar-group) geno... 74 1e-010
gb|DP000009.1| Oryza sativa (japonica cultivar-group) chrom... 74 1e-010
dbj|AP004319.1| Oryza sativa (japonica cultivar-group) chro... 66 3e-008
gb|AACV01003056.1| Oryza sativa (japonica cultivar-group) c... 66 3e-008
ref|NT_079923.2| Oryza sativa (japonica cultivar-group) 66 3e-008
dbj|AP003683.3| Oryza sativa (japonica cultivar-group) geno... 66 3e-008
gb|CH401168.1| Oryza sativa (japonica cultivar-group) chrom... 66 3e-008
gb|D41575.1|D41575 RICS4159A Rice shoot Oryza sativa (japon... 54 1e-004
gb|D40952.1|D40952 RICS3149A Rice shoot Oryza sativa (japon... 50 0.001
gb|AACV01008082.1| Oryza sativa (japonica cultivar-group) c... 46 0.023
gb|CH401176.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.023
gb|CM000140.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.023
dbj|AK105531.1| Oryza sativa (japonica cultivar-group) cDNA... 44 0.092
ref|NT_107234.1| Oryza sativa (japonica cultivar-group) 44 0.092
dbj|AP003761.3| Oryza sativa (japonica cultivar-group) geno... 44 0.092
gb|AACV01014884.1| Oryza sativa (japonica cultivar-group) c... 44 0.092
gb|CH401216.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.092
gb|CM000143.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.092
dbj|AP008212.1| Oryza sativa (japonica cultivar-group) geno... 44 0.092
>gb|AACV01011020.1| Oryza sativa (japonica cultivar-group) chromosome 5 Ctg011020, whole
genome shotgun sequence
Length = 35223
Score = 375 bits (189), Expect = e-101
Identities = 332/379 (87%), Gaps = 3/379 (0%)
Strand = Plus / Plus
Query: 1 gatccaccccatcaacaacggcctcgactcctgcgtcccgccggaggtcggcttgctccg 60
||||| || ||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct: 24591 gatcctcctcatcaacaatggcctcgactcctgcgtcccgcccgaggtcggcttgctccg 24650
Query: 61 ggaggtgaccgtcttcgacgtcagcttcaactcgctcgttggcccgctgccgcagcaggt 120
|||||| ||||| ||||||||||||||||||||||||| |||||||| |||| | ||||
Sbjct: 24651 ggaggtcaccgtgttcgacgtcagcttcaactcgctcgccggcccgctcccgccggaggt 24710
Query: 121 ggccgggatgcgcaaggtggagcagctggacgtcgcgcacaaccgcctgtccggggccgt 180
| |||||||||| |||||||||||||| |||||||||||||||||||| |||| |||||
Sbjct: 24711 gaccgggatgcggaaggtggagcagctcgacgtcgcgcacaaccgcctcgccggcgccgt 24770
Query: 181 cccggaggccatctgcgccctcccgcggctcaagaacctgaccatctcctacaacttctt 240
||||||||| | |||| ||| || || ||||||||| | ||| |||||||||||| |||
Sbjct: 24771 gccggaggccgtgtgcgacctgccccgcctcaagaacttcaccttctcctacaactactt 24830
Query: 241 caccggcgagccgccgtcctgcgcgcgcgtcgtgccttcg---gacggtgacaggaggaa 297
|||||||||||||||||||||||||||||||||||| || ||||| ||| | ||||
Sbjct: 24831 caccggcgagccgccgtcctgcgcgcgcgtcgtgccggcggccgacggcgaccgccggaa 24890
Query: 298 ctgcctgcccaaccgccccacacagcgcacgccgcagcagtgcgccgcgttctactcgca 357
||||| |||||||||||| ||||||||||||| ||||||||||||||||||| |
Sbjct: 24891 ttgcctccccaaccgcccctaccagcgcacgccgcggcagtgcgccgcgttctacgccgc 24950
Query: 358 gccgcccgtcgactgcgcc 376
|||||||||||||||||||
Sbjct: 24951 gccgcccgtcgactgcgcc 24969
Score = 52.0 bits (26), Expect = 4e-004
Identities = 48/56 (85%)
Strand = Plus / Plus
Query: 541 acaattgtacgtggtcagtcattgnngtgcttagattagtagtgttcttgattgat 596
||||||||||||||||| | ||| |||||| |||||||| |||||||||||||
Sbjct: 25180 acaattgtacgtggtcaattgttgttatgcttacattagtagagttcttgattgat 25235
Score = 50.1 bits (25), Expect = 0.001
Identities = 64/77 (83%)
Strand = Plus / Plus
Query: 379 cataccccggcccgttgccaccggtataccctatgccgtacgcatcgcctccgccacctg 438
||||||||||||| ||||| ||||| ||||| | || ||||| ||||| ||||||||
Sbjct: 25028 cataccccggcccattgccgccggtgtaccccgtcccatacgcctcgccgccgccaccgc 25087
Query: 439 cgcagtaccgatgattc 455
||| ||||||||||||
Sbjct: 25088 cgctttaccgatgattc 25104
>ref|XM_476068.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 1245
Score = 375 bits (189), Expect = e-101
Identities = 332/379 (87%), Gaps = 3/379 (0%)
Strand = Plus / Plus
Query: 1 gatccaccccatcaacaacggcctcgactcctgcgtcccgccggaggtcggcttgctccg 60
||||| || ||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct: 735 gatcctcctcatcaacaatggcctcgactcctgcgtcccgcccgaggtcggcttgctccg 794
Query: 61 ggaggtgaccgtcttcgacgtcagcttcaactcgctcgttggcccgctgccgcagcaggt 120
|||||| ||||| ||||||||||||||||||||||||| |||||||| |||| | ||||
Sbjct: 795 ggaggtcaccgtgttcgacgtcagcttcaactcgctcgccggcccgctcccgccggaggt 854
Query: 121 ggccgggatgcgcaaggtggagcagctggacgtcgcgcacaaccgcctgtccggggccgt 180
| |||||||||| |||||||||||||| |||||||||||||||||||| |||| |||||
Sbjct: 855 gaccgggatgcggaaggtggagcagctcgacgtcgcgcacaaccgcctcgccggcgccgt 914
Query: 181 cccggaggccatctgcgccctcccgcggctcaagaacctgaccatctcctacaacttctt 240
||||||||| | |||| ||| || || ||||||||| | ||| |||||||||||| |||
Sbjct: 915 gccggaggccgtgtgcgacctgccccgcctcaagaacttcaccttctcctacaactactt 974
Query: 241 caccggcgagccgccgtcctgcgcgcgcgtcgtgccttcg---gacggtgacaggaggaa 297
|||||||||||||||||||||||||||||||||||| || ||||| ||| | ||||
Sbjct: 975 caccggcgagccgccgtcctgcgcgcgcgtcgtgccggcggccgacggcgaccgccggaa 1034
Query: 298 ctgcctgcccaaccgccccacacagcgcacgccgcagcagtgcgccgcgttctactcgca 357
||||| |||||||||||| ||||||||||||| ||||||||||||||||||| |
Sbjct: 1035 ttgcctccccaaccgcccctaccagcgcacgccgcggcagtgcgccgcgttctacgccgc 1094
Query: 358 gccgcccgtcgactgcgcc 376
|||||||||||||||||||
Sbjct: 1095 gccgcccgtcgactgcgcc 1113
Score = 44.1 bits (22), Expect = 0.092
Identities = 49/58 (84%)
Strand = Plus / Plus
Query: 379 cataccccggcccgttgccaccggtataccctatgccgtacgcatcgcctccgccacc 436
||||||||||||| ||||| ||||| ||||| | || ||||| ||||| ||||||||
Sbjct: 1172 cataccccggcccattgccgccggtgtaccccgtcccatacgcctcgccgccgccacc 1229
>ref|NT_107223.1| Oryza sativa (japonica cultivar-group)
Length = 1494033
Score = 375 bits (189), Expect = e-101
Identities = 332/379 (87%), Gaps = 3/379 (0%)
Strand = Plus / Minus
Query: 1 gatccaccccatcaacaacggcctcgactcctgcgtcccgccggaggtcggcttgctccg 60
||||| || ||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct: 834048 gatcctcctcatcaacaatggcctcgactcctgcgtcccgcccgaggtcggcttgctccg 833989
Query: 61 ggaggtgaccgtcttcgacgtcagcttcaactcgctcgttggcccgctgccgcagcaggt 120
|||||| ||||| ||||||||||||||||||||||||| |||||||| |||| | ||||
Sbjct: 833988 ggaggtcaccgtgttcgacgtcagcttcaactcgctcgccggcccgctcccgccggaggt 833929
Query: 121 ggccgggatgcgcaaggtggagcagctggacgtcgcgcacaaccgcctgtccggggccgt 180
| |||||||||| |||||||||||||| |||||||||||||||||||| |||| |||||
Sbjct: 833928 gaccgggatgcggaaggtggagcagctcgacgtcgcgcacaaccgcctcgccggcgccgt 833869
Query: 181 cccggaggccatctgcgccctcccgcggctcaagaacctgaccatctcctacaacttctt 240
||||||||| | |||| ||| || || ||||||||| | ||| |||||||||||| |||
Sbjct: 833868 gccggaggccgtgtgcgacctgccccgcctcaagaacttcaccttctcctacaactactt 833809
Query: 241 caccggcgagccgccgtcctgcgcgcgcgtcgtgccttcg---gacggtgacaggaggaa 297
|||||||||||||||||||||||||||||||||||| || ||||| ||| | ||||
Sbjct: 833808 caccggcgagccgccgtcctgcgcgcgcgtcgtgccggcggccgacggcgaccgccggaa 833749
Query: 298 ctgcctgcccaaccgccccacacagcgcacgccgcagcagtgcgccgcgttctactcgca 357
||||| |||||||||||| ||||||||||||| ||||||||||||||||||| |
Sbjct: 833748 ttgcctccccaaccgcccctaccagcgcacgccgcggcagtgcgccgcgttctacgccgc 833689
Query: 358 gccgcccgtcgactgcgcc 376
|||||||||||||||||||
Sbjct: 833688 gccgcccgtcgactgcgcc 833670
Score = 52.0 bits (26), Expect = 4e-004
Identities = 48/56 (85%)
Strand = Plus / Minus
Query: 541 acaattgtacgtggtcagtcattgnngtgcttagattagtagtgttcttgattgat 596
||||||||||||||||| | ||| |||||| |||||||| |||||||||||||
Sbjct: 833459 acaattgtacgtggtcaattgttgttatgcttacattagtagagttcttgattgat 833404
Score = 50.1 bits (25), Expect = 0.001
Identities = 64/77 (83%)
Strand = Plus / Minus
Query: 379 cataccccggcccgttgccaccggtataccctatgccgtacgcatcgcctccgccacctg 438
||||||||||||| ||||| ||||| ||||| | || ||||| ||||| ||||||||
Sbjct: 833611 cataccccggcccattgccgccggtgtaccccgtcccatacgcctcgccgccgccaccgc 833552
Query: 439 cgcagtaccgatgattc 455
||| ||||||||||||
Sbjct: 833551 cgctttaccgatgattc 833535
>gb|AC135425.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0453H11,
complete sequence
Length = 187956
Score = 375 bits (189), Expect = e-101
Identities = 332/379 (87%), Gaps = 3/379 (0%)
Strand = Plus / Minus
Query: 1 gatccaccccatcaacaacggcctcgactcctgcgtcccgccggaggtcggcttgctccg 60
||||| || ||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct: 29184 gatcctcctcatcaacaatggcctcgactcctgcgtcccgcccgaggtcggcttgctccg 29125
Query: 61 ggaggtgaccgtcttcgacgtcagcttcaactcgctcgttggcccgctgccgcagcaggt 120
|||||| ||||| ||||||||||||||||||||||||| |||||||| |||| | ||||
Sbjct: 29124 ggaggtcaccgtgttcgacgtcagcttcaactcgctcgccggcccgctcccgccggaggt 29065
Query: 121 ggccgggatgcgcaaggtggagcagctggacgtcgcgcacaaccgcctgtccggggccgt 180
| |||||||||| |||||||||||||| |||||||||||||||||||| |||| |||||
Sbjct: 29064 gaccgggatgcggaaggtggagcagctcgacgtcgcgcacaaccgcctcgccggcgccgt 29005
Query: 181 cccggaggccatctgcgccctcccgcggctcaagaacctgaccatctcctacaacttctt 240
||||||||| | |||| ||| || || ||||||||| | ||| |||||||||||| |||
Sbjct: 29004 gccggaggccgtgtgcgacctgccccgcctcaagaacttcaccttctcctacaactactt 28945
Query: 241 caccggcgagccgccgtcctgcgcgcgcgtcgtgccttcg---gacggtgacaggaggaa 297
|||||||||||||||||||||||||||||||||||| || ||||| ||| | ||||
Sbjct: 28944 caccggcgagccgccgtcctgcgcgcgcgtcgtgccggcggccgacggcgaccgccggaa 28885
Query: 298 ctgcctgcccaaccgccccacacagcgcacgccgcagcagtgcgccgcgttctactcgca 357
||||| |||||||||||| ||||||||||||| ||||||||||||||||||| |
Sbjct: 28884 ttgcctccccaaccgcccctaccagcgcacgccgcggcagtgcgccgcgttctacgccgc 28825
Query: 358 gccgcccgtcgactgcgcc 376
|||||||||||||||||||
Sbjct: 28824 gccgcccgtcgactgcgcc 28806
Score = 52.0 bits (26), Expect = 4e-004
Identities = 48/56 (85%)
Strand = Plus / Minus
Query: 541 acaattgtacgtggtcagtcattgnngtgcttagattagtagtgttcttgattgat 596
||||||||||||||||| | ||| |||||| |||||||| |||||||||||||
Sbjct: 28595 acaattgtacgtggtcaattgttgttatgcttacattagtagagttcttgattgat 28540
Score = 50.1 bits (25), Expect = 0.001
Identities = 64/77 (83%)
Strand = Plus / Minus
Query: 379 cataccccggcccgttgccaccggtataccctatgccgtacgcatcgcctccgccacctg 438
||||||||||||| ||||| ||||| ||||| | || ||||| ||||| ||||||||
Sbjct: 28747 cataccccggcccattgccgccggtgtaccccgtcccatacgcctcgccgccgccaccgc 28688
Query: 439 cgcagtaccgatgattc 455
||| ||||||||||||
Sbjct: 28687 cgctttaccgatgattc 28671
>gb|CH401191.1| Oryza sativa (japonica cultivar-group) chromosome 5 scaffold000028 genomic
scaffold, whole genome shotgun sequence
Length = 7678539
Score = 375 bits (189), Expect = e-101
Identities = 332/379 (87%), Gaps = 3/379 (0%)
Strand = Plus / Minus
Query: 1 gatccaccccatcaacaacggcctcgactcctgcgtcccgccggaggtcggcttgctccg 60
||||| || ||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct: 4648181 gatcctcctcatcaacaatggcctcgactcctgcgtcccgcccgaggtcggcttgctccg 4648122
Query: 61 ggaggtgaccgtcttcgacgtcagcttcaactcgctcgttggcccgctgccgcagcaggt 120
|||||| ||||| ||||||||||||||||||||||||| |||||||| |||| | ||||
Sbjct: 4648121 ggaggtcaccgtgttcgacgtcagcttcaactcgctcgccggcccgctcccgccggaggt 4648062
Query: 121 ggccgggatgcgcaaggtggagcagctggacgtcgcgcacaaccgcctgtccggggccgt 180
| |||||||||| |||||||||||||| |||||||||||||||||||| |||| |||||
Sbjct: 4648061 gaccgggatgcggaaggtggagcagctcgacgtcgcgcacaaccgcctcgccggcgccgt 4648002
Query: 181 cccggaggccatctgcgccctcccgcggctcaagaacctgaccatctcctacaacttctt 240
||||||||| | |||| ||| || || ||||||||| | ||| |||||||||||| |||
Sbjct: 4648001 gccggaggccgtgtgcgacctgccccgcctcaagaacttcaccttctcctacaactactt 4647942
Query: 241 caccggcgagccgccgtcctgcgcgcgcgtcgtgccttcg---gacggtgacaggaggaa 297
|||||||||||||||||||||||||||||||||||| || ||||| ||| | ||||
Sbjct: 4647941 caccggcgagccgccgtcctgcgcgcgcgtcgtgccggcggccgacggcgaccgccggaa 4647882
Query: 298 ctgcctgcccaaccgccccacacagcgcacgccgcagcagtgcgccgcgttctactcgca 357
||||| |||||||||||| ||||||||||||| ||||||||||||||||||| |
Sbjct: 4647881 ttgcctccccaaccgcccctaccagcgcacgccgcggcagtgcgccgcgttctacgccgc 4647822
Query: 358 gccgcccgtcgactgcgcc 376
|||||||||||||||||||
Sbjct: 4647821 gccgcccgtcgactgcgcc 4647803
Score = 52.0 bits (26), Expect = 4e-004
Identities = 48/56 (85%)
Strand = Plus / Minus
Query: 541 acaattgtacgtggtcagtcattgnngtgcttagattagtagtgttcttgattgat 596
||||||||||||||||| | ||| |||||| |||||||| |||||||||||||
Sbjct: 4647592 acaattgtacgtggtcaattgttgttatgcttacattagtagagttcttgattgat 4647537
Score = 50.1 bits (25), Expect = 0.001
Identities = 64/77 (83%)
Strand = Plus / Minus
Query: 379 cataccccggcccgttgccaccggtataccctatgccgtacgcatcgcctccgccacctg 438
||||||||||||| ||||| ||||| ||||| | || ||||| ||||| ||||||||
Sbjct: 4647744 cataccccggcccattgccgccggtgtaccccgtcccatacgcctcgccgccgccaccgc 4647685
Query: 439 cgcagtaccgatgattc 455
||| ||||||||||||
Sbjct: 4647684 cgctttaccgatgattc 4647668
>gb|CM000142.1| Oryza sativa (japonica cultivar-group) chromosome 5, whole genome shotgun
sequence
Length = 29309110
Score = 375 bits (189), Expect = e-101
Identities = 332/379 (87%), Gaps = 3/379 (0%)
Strand = Plus / Minus
Query: 1 gatccaccccatcaacaacggcctcgactcctgcgtcccgccggaggtcggcttgctccg 60
||||| || ||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct: 4648181 gatcctcctcatcaacaatggcctcgactcctgcgtcccgcccgaggtcggcttgctccg 4648122
Query: 61 ggaggtgaccgtcttcgacgtcagcttcaactcgctcgttggcccgctgccgcagcaggt 120
|||||| ||||| ||||||||||||||||||||||||| |||||||| |||| | ||||
Sbjct: 4648121 ggaggtcaccgtgttcgacgtcagcttcaactcgctcgccggcccgctcccgccggaggt 4648062
Query: 121 ggccgggatgcgcaaggtggagcagctggacgtcgcgcacaaccgcctgtccggggccgt 180
| |||||||||| |||||||||||||| |||||||||||||||||||| |||| |||||
Sbjct: 4648061 gaccgggatgcggaaggtggagcagctcgacgtcgcgcacaaccgcctcgccggcgccgt 4648002
Query: 181 cccggaggccatctgcgccctcccgcggctcaagaacctgaccatctcctacaacttctt 240
||||||||| | |||| ||| || || ||||||||| | ||| |||||||||||| |||
Sbjct: 4648001 gccggaggccgtgtgcgacctgccccgcctcaagaacttcaccttctcctacaactactt 4647942
Query: 241 caccggcgagccgccgtcctgcgcgcgcgtcgtgccttcg---gacggtgacaggaggaa 297
|||||||||||||||||||||||||||||||||||| || ||||| ||| | ||||
Sbjct: 4647941 caccggcgagccgccgtcctgcgcgcgcgtcgtgccggcggccgacggcgaccgccggaa 4647882
Query: 298 ctgcctgcccaaccgccccacacagcgcacgccgcagcagtgcgccgcgttctactcgca 357
||||| |||||||||||| ||||||||||||| ||||||||||||||||||| |
Sbjct: 4647881 ttgcctccccaaccgcccctaccagcgcacgccgcggcagtgcgccgcgttctacgccgc 4647822
Query: 358 gccgcccgtcgactgcgcc 376
|||||||||||||||||||
Sbjct: 4647821 gccgcccgtcgactgcgcc 4647803
Score = 52.0 bits (26), Expect = 4e-004
Identities = 48/56 (85%)
Strand = Plus / Minus
Query: 541 acaattgtacgtggtcagtcattgnngtgcttagattagtagtgttcttgattgat 596
||||||||||||||||| | ||| |||||| |||||||| |||||||||||||
Sbjct: 4647592 acaattgtacgtggtcaattgttgttatgcttacattagtagagttcttgattgat 4647537
Score = 50.1 bits (25), Expect = 0.001
Identities = 64/77 (83%)
Strand = Plus / Minus
Query: 379 cataccccggcccgttgccaccggtataccctatgccgtacgcatcgcctccgccacctg 438
||||||||||||| ||||| ||||| ||||| | || ||||| ||||| ||||||||
Sbjct: 4647744 cataccccggcccattgccgccggtgtaccccgtcccatacgcctcgccgccgccaccgc 4647685
Query: 439 cgcagtaccgatgattc 455
||| ||||||||||||
Sbjct: 4647684 cgctttaccgatgattc 4647668
>gb|AC130610.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0478F09,
complete sequence
Length = 145070
Score = 375 bits (189), Expect = e-101
Identities = 332/379 (87%), Gaps = 3/379 (0%)
Strand = Plus / Minus
Query: 1 gatccaccccatcaacaacggcctcgactcctgcgtcccgccggaggtcggcttgctccg 60
||||| || ||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct: 124781 gatcctcctcatcaacaatggcctcgactcctgcgtcccgcccgaggtcggcttgctccg 124722
Query: 61 ggaggtgaccgtcttcgacgtcagcttcaactcgctcgttggcccgctgccgcagcaggt 120
|||||| ||||| ||||||||||||||||||||||||| |||||||| |||| | ||||
Sbjct: 124721 ggaggtcaccgtgttcgacgtcagcttcaactcgctcgccggcccgctcccgccggaggt 124662
Query: 121 ggccgggatgcgcaaggtggagcagctggacgtcgcgcacaaccgcctgtccggggccgt 180
| |||||||||| |||||||||||||| |||||||||||||||||||| |||| |||||
Sbjct: 124661 gaccgggatgcggaaggtggagcagctcgacgtcgcgcacaaccgcctcgccggcgccgt 124602
Query: 181 cccggaggccatctgcgccctcccgcggctcaagaacctgaccatctcctacaacttctt 240
||||||||| | |||| ||| || || ||||||||| | ||| |||||||||||| |||
Sbjct: 124601 gccggaggccgtgtgcgacctgccccgcctcaagaacttcaccttctcctacaactactt 124542
Query: 241 caccggcgagccgccgtcctgcgcgcgcgtcgtgccttcg---gacggtgacaggaggaa 297
|||||||||||||||||||||||||||||||||||| || ||||| ||| | ||||
Sbjct: 124541 caccggcgagccgccgtcctgcgcgcgcgtcgtgccggcggccgacggcgaccgccggaa 124482
Query: 298 ctgcctgcccaaccgccccacacagcgcacgccgcagcagtgcgccgcgttctactcgca 357
||||| |||||||||||| ||||||||||||| ||||||||||||||||||| |
Sbjct: 124481 ttgcctccccaaccgcccctaccagcgcacgccgcggcagtgcgccgcgttctacgccgc 124422
Query: 358 gccgcccgtcgactgcgcc 376
|||||||||||||||||||
Sbjct: 124421 gccgcccgtcgactgcgcc 124403
Score = 52.0 bits (26), Expect = 4e-004
Identities = 48/56 (85%)
Strand = Plus / Minus
Query: 541 acaattgtacgtggtcagtcattgnngtgcttagattagtagtgttcttgattgat 596
||||||||||||||||| | ||| |||||| |||||||| |||||||||||||
Sbjct: 124192 acaattgtacgtggtcaattgttgttatgcttacattagtagagttcttgattgat 124137
Score = 50.1 bits (25), Expect = 0.001
Identities = 64/77 (83%)
Strand = Plus / Minus
Query: 379 cataccccggcccgttgccaccggtataccctatgccgtacgcatcgcctccgccacctg 438
||||||||||||| ||||| ||||| ||||| | || ||||| ||||| ||||||||
Sbjct: 124344 cataccccggcccattgccgccggtgtaccccgtcccatacgcctcgccgccgccaccgc 124285
Query: 439 cgcagtaccgatgattc 455
||| ||||||||||||
Sbjct: 124284 cgctttaccgatgattc 124268
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
sequence
Length = 29737217
Score = 375 bits (189), Expect = e-101
Identities = 332/379 (87%), Gaps = 3/379 (0%)
Strand = Plus / Minus
Query: 1 gatccaccccatcaacaacggcctcgactcctgcgtcccgccggaggtcggcttgctccg 60
||||| || ||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct: 4756776 gatcctcctcatcaacaatggcctcgactcctgcgtcccgcccgaggtcggcttgctccg 4756717
Query: 61 ggaggtgaccgtcttcgacgtcagcttcaactcgctcgttggcccgctgccgcagcaggt 120
|||||| ||||| ||||||||||||||||||||||||| |||||||| |||| | ||||
Sbjct: 4756716 ggaggtcaccgtgttcgacgtcagcttcaactcgctcgccggcccgctcccgccggaggt 4756657
Query: 121 ggccgggatgcgcaaggtggagcagctggacgtcgcgcacaaccgcctgtccggggccgt 180
| |||||||||| |||||||||||||| |||||||||||||||||||| |||| |||||
Sbjct: 4756656 gaccgggatgcggaaggtggagcagctcgacgtcgcgcacaaccgcctcgccggcgccgt 4756597
Query: 181 cccggaggccatctgcgccctcccgcggctcaagaacctgaccatctcctacaacttctt 240
||||||||| | |||| ||| || || ||||||||| | ||| |||||||||||| |||
Sbjct: 4756596 gccggaggccgtgtgcgacctgccccgcctcaagaacttcaccttctcctacaactactt 4756537
Query: 241 caccggcgagccgccgtcctgcgcgcgcgtcgtgccttcg---gacggtgacaggaggaa 297
|||||||||||||||||||||||||||||||||||| || ||||| ||| | ||||
Sbjct: 4756536 caccggcgagccgccgtcctgcgcgcgcgtcgtgccggcggccgacggcgaccgccggaa 4756477
Query: 298 ctgcctgcccaaccgccccacacagcgcacgccgcagcagtgcgccgcgttctactcgca 357
||||| |||||||||||| ||||||||||||| ||||||||||||||||||| |
Sbjct: 4756476 ttgcctccccaaccgcccctaccagcgcacgccgcggcagtgcgccgcgttctacgccgc 4756417
Query: 358 gccgcccgtcgactgcgcc 376
|||||||||||||||||||
Sbjct: 4756416 gccgcccgtcgactgcgcc 4756398
Score = 52.0 bits (26), Expect = 4e-004
Identities = 48/56 (85%)
Strand = Plus / Minus
Query: 541 acaattgtacgtggtcagtcattgnngtgcttagattagtagtgttcttgattgat 596
||||||||||||||||| | ||| |||||| |||||||| |||||||||||||
Sbjct: 4756187 acaattgtacgtggtcaattgttgttatgcttacattagtagagttcttgattgat 4756132
Score = 50.1 bits (25), Expect = 0.001
Identities = 64/77 (83%)
Strand = Plus / Minus
Query: 379 cataccccggcccgttgccaccggtataccctatgccgtacgcatcgcctccgccacctg 438
||||||||||||| ||||| ||||| ||||| | || ||||| ||||| ||||||||
Sbjct: 4756339 cataccccggcccattgccgccggtgtaccccgtcccatacgcctcgccgccgccaccgc 4756280
Query: 439 cgcagtaccgatgattc 455
||| ||||||||||||
Sbjct: 4756279 cgctttaccgatgattc 4756263
>dbj|AK103199.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033122A11, full
insert sequence
Length = 2207
Score = 212 bits (107), Expect = 2e-052
Identities = 302/367 (82%)
Strand = Plus / Plus
Query: 10 catcaacaacggcctcgactcctgcgtcccgccggaggtcggcttgctccgggaggtgac 69
|||||||| |||||| ||||||| | |||||||||||||| |||| || ||||||||
Sbjct: 840 catcaacacgggcctcagctcctgcctgccgccggaggtcgggatgctgcgagaggtgac 899
Query: 70 cgtcttcgacgtcagcttcaactcgctcgttggcccgctgccgcagcaggtggccgggat 129
|| |||||||| ||||||||| ||||| |||||||||||| | ||||||||||||
Sbjct: 900 ggtgttcgacgtgagcttcaaccggctcgccggcccgctgccgtcggcggtggccgggat 959
Query: 130 gcgcaaggtggagcagctggacgtcgcgcacaaccgcctgtccggggccgtcccggaggc 189
| | |||||||||||||| |||||||||||||||| || | ||||| | ||| ||||
Sbjct: 960 gaggaaggtggagcagctcgacgtcgcgcacaacctgctcacgggggcgataccgcaggc 1019
Query: 190 catctgcgccctcccgcggctcaagaacctgaccatctcctacaacttcttcaccggcga 249
| |||| || ||||| ||||||||| | ||| || | ||||||||||||||||||||
Sbjct: 1020 ggtgtgcgagctgccgcgcctcaagaacttcaccttcgcgtacaacttcttcaccggcga 1079
Query: 250 gccgccgtcctgcgcgcgcgtcgtgccttcggacggtgacaggaggaactgcctgcccaa 309
||||||||||||||||| || |||||| |||| ||| |||||||||||||||||||
Sbjct: 1080 gccgccgtcctgcgcgcacgccgtgccgcgctacggcgaccggaggaactgcctgcccaa 1139
Query: 310 ccgccccacacagcgcacgccgcagcagtgcgccgcgttctactcgcagccgcccgtcga 369
||||||| | ||||| |||| || ||||||||||||||||| | ||| || |||||| |
Sbjct: 1140 ccgccccgcccagcggacgctgcggcagtgcgccgcgttcttcgcgcgccctcccgtcaa 1199
Query: 370 ctgcgcc 376
|||||||
Sbjct: 1200 ctgcgcc 1206
>gb|AACV01000298.1| Oryza sativa (japonica cultivar-group) chromosome 1 Ctg000298, whole
genome shotgun sequence
Length = 12784
Score = 212 bits (107), Expect = 2e-052
Identities = 302/367 (82%)
Strand = Plus / Minus
Query: 10 catcaacaacggcctcgactcctgcgtcccgccggaggtcggcttgctccgggaggtgac 69
|||||||| |||||| ||||||| | |||||||||||||| |||| || ||||||||
Sbjct: 6370 catcaacacgggcctcagctcctgcctgccgccggaggtcgggatgctgcgagaggtgac 6311
Query: 70 cgtcttcgacgtcagcttcaactcgctcgttggcccgctgccgcagcaggtggccgggat 129
|| |||||||| ||||||||| ||||| |||||||||||| | ||||||||||||
Sbjct: 6310 ggtgttcgacgtgagcttcaaccggctcgccggcccgctgccgtcggcggtggccgggat 6251
Query: 130 gcgcaaggtggagcagctggacgtcgcgcacaaccgcctgtccggggccgtcccggaggc 189
| | |||||||||||||| |||||||||||||||| || | ||||| | ||| ||||
Sbjct: 6250 gaggaaggtggagcagctcgacgtcgcgcacaacctgctcacgggggcgataccgcaggc 6191
Query: 190 catctgcgccctcccgcggctcaagaacctgaccatctcctacaacttcttcaccggcga 249
| |||| || ||||| ||||||||| | ||| || | ||||||||||||||||||||
Sbjct: 6190 ggtgtgcgagctgccgcgcctcaagaacttcaccttcgcgtacaacttcttcaccggcga 6131
Query: 250 gccgccgtcctgcgcgcgcgtcgtgccttcggacggtgacaggaggaactgcctgcccaa 309
||||||||||||||||| || |||||| |||| ||| |||||||||||||||||||
Sbjct: 6130 gccgccgtcctgcgcgcacgccgtgccgcgctacggcgaccggaggaactgcctgcccaa 6071
Query: 310 ccgccccacacagcgcacgccgcagcagtgcgccgcgttctactcgcagccgcccgtcga 369
||||||| | ||||| |||| || ||||||||||||||||| | ||| || |||||| |
Sbjct: 6070 ccgccccgcccagcggacgctgcggcagtgcgccgcgttcttcgcgcgccctcccgtcaa 6011
Query: 370 ctgcgcc 376
|||||||
Sbjct: 6010 ctgcgcc 6004
>dbj|AP002524.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
clone:P0406H10
Length = 156419
Score = 212 bits (107), Expect = 2e-052
Identities = 302/367 (82%)
Strand = Plus / Minus
Query: 10 catcaacaacggcctcgactcctgcgtcccgccggaggtcggcttgctccgggaggtgac 69
|||||||| |||||| ||||||| | |||||||||||||| |||| || ||||||||
Sbjct: 126545 catcaacacgggcctcagctcctgcctgccgccggaggtcgggatgctgcgagaggtgac 126486
Query: 70 cgtcttcgacgtcagcttcaactcgctcgttggcccgctgccgcagcaggtggccgggat 129
|| |||||||| ||||||||| ||||| |||||||||||| | ||||||||||||
Sbjct: 126485 ggtgttcgacgtgagcttcaaccggctcgccggcccgctgccgtcggcggtggccgggat 126426
Query: 130 gcgcaaggtggagcagctggacgtcgcgcacaaccgcctgtccggggccgtcccggaggc 189
| | |||||||||||||| |||||||||||||||| || | ||||| | ||| ||||
Sbjct: 126425 gaggaaggtggagcagctcgacgtcgcgcacaacctgctcacgggggcgataccgcaggc 126366
Query: 190 catctgcgccctcccgcggctcaagaacctgaccatctcctacaacttcttcaccggcga 249
| |||| || ||||| ||||||||| | ||| || | ||||||||||||||||||||
Sbjct: 126365 ggtgtgcgagctgccgcgcctcaagaacttcaccttcgcgtacaacttcttcaccggcga 126306
Query: 250 gccgccgtcctgcgcgcgcgtcgtgccttcggacggtgacaggaggaactgcctgcccaa 309
||||||||||||||||| || |||||| |||| ||| |||||||||||||||||||
Sbjct: 126305 gccgccgtcctgcgcgcacgccgtgccgcgctacggcgaccggaggaactgcctgcccaa 126246
Query: 310 ccgccccacacagcgcacgccgcagcagtgcgccgcgttctactcgcagccgcccgtcga 369
||||||| | ||||| |||| || ||||||||||||||||| | ||| || |||||| |
Sbjct: 126245 ccgccccgcccagcggacgctgcggcagtgcgccgcgttcttcgcgcgccctcccgtcaa 126186
Query: 370 ctgcgcc 376
|||||||
Sbjct: 126185 ctgcgcc 126179
>dbj|AP003118.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
clone:OJ1174_D05
Length = 128525
Score = 212 bits (107), Expect = 2e-052
Identities = 302/367 (82%)
Strand = Plus / Minus
Query: 10 catcaacaacggcctcgactcctgcgtcccgccggaggtcggcttgctccgggaggtgac 69
|||||||| |||||| ||||||| | |||||||||||||| |||| || ||||||||
Sbjct: 17541 catcaacacgggcctcagctcctgcctgccgccggaggtcgggatgctgcgagaggtgac 17482
Query: 70 cgtcttcgacgtcagcttcaactcgctcgttggcccgctgccgcagcaggtggccgggat 129
|| |||||||| ||||||||| ||||| |||||||||||| | ||||||||||||
Sbjct: 17481 ggtgttcgacgtgagcttcaaccggctcgccggcccgctgccgtcggcggtggccgggat 17422
Query: 130 gcgcaaggtggagcagctggacgtcgcgcacaaccgcctgtccggggccgtcccggaggc 189
| | |||||||||||||| |||||||||||||||| || | ||||| | ||| ||||
Sbjct: 17421 gaggaaggtggagcagctcgacgtcgcgcacaacctgctcacgggggcgataccgcaggc 17362
Query: 190 catctgcgccctcccgcggctcaagaacctgaccatctcctacaacttcttcaccggcga 249
| |||| || ||||| ||||||||| | ||| || | ||||||||||||||||||||
Sbjct: 17361 ggtgtgcgagctgccgcgcctcaagaacttcaccttcgcgtacaacttcttcaccggcga 17302
Query: 250 gccgccgtcctgcgcgcgcgtcgtgccttcggacggtgacaggaggaactgcctgcccaa 309
||||||||||||||||| || |||||| |||| ||| |||||||||||||||||||
Sbjct: 17301 gccgccgtcctgcgcgcacgccgtgccgcgctacggcgaccggaggaactgcctgcccaa 17242
Query: 310 ccgccccacacagcgcacgccgcagcagtgcgccgcgttctactcgcagccgcccgtcga 369
||||||| | ||||| |||| || ||||||||||||||||| | ||| || |||||| |
Sbjct: 17241 ccgccccgcccagcggacgctgcggcagtgcgccgcgttcttcgcgcgccctcccgtcaa 17182
Query: 370 ctgcgcc 376
|||||||
Sbjct: 17181 ctgcgcc 17175
>dbj|BA000010.8| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43342410
Score = 212 bits (107), Expect = 2e-052
Identities = 302/367 (82%)
Strand = Plus / Minus
Query: 10 catcaacaacggcctcgactcctgcgtcccgccggaggtcggcttgctccgggaggtgac 69
|||||||| |||||| ||||||| | |||||||||||||| |||| || ||||||||
Sbjct: 4177376 catcaacacgggcctcagctcctgcctgccgccggaggtcgggatgctgcgagaggtgac 4177317
Query: 70 cgtcttcgacgtcagcttcaactcgctcgttggcccgctgccgcagcaggtggccgggat 129
|| |||||||| ||||||||| ||||| |||||||||||| | ||||||||||||
Sbjct: 4177316 ggtgttcgacgtgagcttcaaccggctcgccggcccgctgccgtcggcggtggccgggat 4177257
Query: 130 gcgcaaggtggagcagctggacgtcgcgcacaaccgcctgtccggggccgtcccggaggc 189
| | |||||||||||||| |||||||||||||||| || | ||||| | ||| ||||
Sbjct: 4177256 gaggaaggtggagcagctcgacgtcgcgcacaacctgctcacgggggcgataccgcaggc 4177197
Query: 190 catctgcgccctcccgcggctcaagaacctgaccatctcctacaacttcttcaccggcga 249
| |||| || ||||| ||||||||| | ||| || | ||||||||||||||||||||
Sbjct: 4177196 ggtgtgcgagctgccgcgcctcaagaacttcaccttcgcgtacaacttcttcaccggcga 4177137
Query: 250 gccgccgtcctgcgcgcgcgtcgtgccttcggacggtgacaggaggaactgcctgcccaa 309
||||||||||||||||| || |||||| |||| ||| |||||||||||||||||||
Sbjct: 4177136 gccgccgtcctgcgcgcacgccgtgccgcgctacggcgaccggaggaactgcctgcccaa 4177077
Query: 310 ccgccccacacagcgcacgccgcagcagtgcgccgcgttctactcgcagccgcccgtcga 369
||||||| | ||||| |||| || ||||||||||||||||| | ||| || |||||| |
Sbjct: 4177076 ccgccccgcccagcggacgctgcggcagtgcgccgcgttcttcgcgcgccctcccgtcaa 4177017
Query: 370 ctgcgcc 376
|||||||
Sbjct: 4177016 ctgcgcc 4177010
Score = 73.8 bits (37), Expect = 1e-010
Identities = 97/117 (82%)
Strand = Plus / Plus
Query: 140 gagcagctggacgtcgcgcacaaccgcctgtccggggccgtcccggaggccatctgcgcc 199
|||||||| ||| ||| |||||||||||| |||| | ||| ||||||| ||||||| |
Sbjct: 23361058 gagcagctcgacctcgggcacaaccgcctcaccggcgacgtgccggagggcatctgccac 23361117
Query: 200 ctcccgcggctcaagaacctgaccatctcctacaacttcttcaccggcgagccgccg 256
|| |||| ||| ||||| | ||| ||||||||||||| |||||||||||||||||
Sbjct: 23361118 ctgccgcacctccagaacttcacctactcctacaacttcatcaccggcgagccgccg 23361174
Score = 65.9 bits (33), Expect = 3e-008
Identities = 78/93 (83%)
Strand = Plus / Plus
Query: 72 tcttcgacgtcagcttcaactcgctcgttggcccgctgccgcagcaggtggccgggatgc 131
||||| |||||||||||||||| |||| ||||||||| || | ||||| || ||||||
Sbjct: 42054119 tcttcaacgtcagcttcaactccctcgctggcccgctcccaccagaggtgcccaggatgc 42054178
Query: 132 gcaaggtggagcagctggacgtcgcgcacaacc 164
||||||||| |||| || |||||||||||||
Sbjct: 42054179 agaaggtggagtagctcgatgtcgcgcacaacc 42054211
>ref|NM_189545.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 1740
Score = 212 bits (107), Expect = 2e-052
Identities = 302/367 (82%)
Strand = Plus / Plus
Query: 10 catcaacaacggcctcgactcctgcgtcccgccggaggtcggcttgctccgggaggtgac 69
|||||||| |||||| ||||||| | |||||||||||||| |||| || ||||||||
Sbjct: 738 catcaacacgggcctcagctcctgcctgccgccggaggtcgggatgctgcgagaggtgac 797
Query: 70 cgtcttcgacgtcagcttcaactcgctcgttggcccgctgccgcagcaggtggccgggat 129
|| |||||||| ||||||||| ||||| |||||||||||| | ||||||||||||
Sbjct: 798 ggtgttcgacgtgagcttcaaccggctcgccggcccgctgccgtcggcggtggccgggat 857
Query: 130 gcgcaaggtggagcagctggacgtcgcgcacaaccgcctgtccggggccgtcccggaggc 189
| | |||||||||||||| |||||||||||||||| || | ||||| | ||| ||||
Sbjct: 858 gaggaaggtggagcagctcgacgtcgcgcacaacctgctcacgggggcgataccgcaggc 917
Query: 190 catctgcgccctcccgcggctcaagaacctgaccatctcctacaacttcttcaccggcga 249
| |||| || ||||| ||||||||| | ||| || | ||||||||||||||||||||
Sbjct: 918 ggtgtgcgagctgccgcgcctcaagaacttcaccttcgcgtacaacttcttcaccggcga 977
Query: 250 gccgccgtcctgcgcgcgcgtcgtgccttcggacggtgacaggaggaactgcctgcccaa 309
||||||||||||||||| || |||||| |||| ||| |||||||||||||||||||
Sbjct: 978 gccgccgtcctgcgcgcacgccgtgccgcgctacggcgaccggaggaactgcctgcccaa 1037
Query: 310 ccgccccacacagcgcacgccgcagcagtgcgccgcgttctactcgcagccgcccgtcga 369
||||||| | ||||| |||| || ||||||||||||||||| | ||| || |||||| |
Sbjct: 1038 ccgccccgcccagcggacgctgcggcagtgcgccgcgttcttcgcgcgccctcccgtcaa 1097
Query: 370 ctgcgcc 376
|||||||
Sbjct: 1098 ctgcgcc 1104
>ref|XM_550392.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 2207
Score = 212 bits (107), Expect = 2e-052
Identities = 302/367 (82%)
Strand = Plus / Plus
Query: 10 catcaacaacggcctcgactcctgcgtcccgccggaggtcggcttgctccgggaggtgac 69
|||||||| |||||| ||||||| | |||||||||||||| |||| || ||||||||
Sbjct: 840 catcaacacgggcctcagctcctgcctgccgccggaggtcgggatgctgcgagaggtgac 899
Query: 70 cgtcttcgacgtcagcttcaactcgctcgttggcccgctgccgcagcaggtggccgggat 129
|| |||||||| ||||||||| ||||| |||||||||||| | ||||||||||||
Sbjct: 900 ggtgttcgacgtgagcttcaaccggctcgccggcccgctgccgtcggcggtggccgggat 959
Query: 130 gcgcaaggtggagcagctggacgtcgcgcacaaccgcctgtccggggccgtcccggaggc 189
| | |||||||||||||| |||||||||||||||| || | ||||| | ||| ||||
Sbjct: 960 gaggaaggtggagcagctcgacgtcgcgcacaacctgctcacgggggcgataccgcaggc 1019
Query: 190 catctgcgccctcccgcggctcaagaacctgaccatctcctacaacttcttcaccggcga 249
| |||| || ||||| ||||||||| | ||| || | ||||||||||||||||||||
Sbjct: 1020 ggtgtgcgagctgccgcgcctcaagaacttcaccttcgcgtacaacttcttcaccggcga 1079
Query: 250 gccgccgtcctgcgcgcgcgtcgtgccttcggacggtgacaggaggaactgcctgcccaa 309
||||||||||||||||| || |||||| |||| ||| |||||||||||||||||||
Sbjct: 1080 gccgccgtcctgcgcgcacgccgtgccgcgctacggcgaccggaggaactgcctgcccaa 1139
Query: 310 ccgccccacacagcgcacgccgcagcagtgcgccgcgttctactcgcagccgcccgtcga 369
||||||| | ||||| |||| || ||||||||||||||||| | ||| || |||||| |
Sbjct: 1140 ccgccccgcccagcggacgctgcggcagtgcgccgcgttcttcgcgcgccctcccgtcaa 1199
Query: 370 ctgcgcc 376
|||||||
Sbjct: 1200 ctgcgcc 1206
>ref|NT_036312.3| Oryza sativa (japonica cultivar-group)
Length = 10050053
Score = 212 bits (107), Expect = 2e-052
Identities = 302/367 (82%)
Strand = Plus / Minus
Query: 10 catcaacaacggcctcgactcctgcgtcccgccggaggtcggcttgctccgggaggtgac 69
|||||||| |||||| ||||||| | |||||||||||||| |||| || ||||||||
Sbjct: 4177216 catcaacacgggcctcagctcctgcctgccgccggaggtcgggatgctgcgagaggtgac 4177157
Query: 70 cgtcttcgacgtcagcttcaactcgctcgttggcccgctgccgcagcaggtggccgggat 129
|| |||||||| ||||||||| ||||| |||||||||||| | ||||||||||||
Sbjct: 4177156 ggtgttcgacgtgagcttcaaccggctcgccggcccgctgccgtcggcggtggccgggat 4177097
Query: 130 gcgcaaggtggagcagctggacgtcgcgcacaaccgcctgtccggggccgtcccggaggc 189
| | |||||||||||||| |||||||||||||||| || | ||||| | ||| ||||
Sbjct: 4177096 gaggaaggtggagcagctcgacgtcgcgcacaacctgctcacgggggcgataccgcaggc 4177037
Query: 190 catctgcgccctcccgcggctcaagaacctgaccatctcctacaacttcttcaccggcga 249
| |||| || ||||| ||||||||| | ||| || | ||||||||||||||||||||
Sbjct: 4177036 ggtgtgcgagctgccgcgcctcaagaacttcaccttcgcgtacaacttcttcaccggcga 4176977
Query: 250 gccgccgtcctgcgcgcgcgtcgtgccttcggacggtgacaggaggaactgcctgcccaa 309
||||||||||||||||| || |||||| |||| ||| |||||||||||||||||||
Sbjct: 4176976 gccgccgtcctgcgcgcacgccgtgccgcgctacggcgaccggaggaactgcctgcccaa 4176917
Query: 310 ccgccccacacagcgcacgccgcagcagtgcgccgcgttctactcgcagccgcccgtcga 369
||||||| | ||||| |||| || ||||||||||||||||| | ||| || |||||| |
Sbjct: 4176916 ccgccccgcccagcggacgctgcggcagtgcgccgcgttcttcgcgcgccctcccgtcaa 4176857
Query: 370 ctgcgcc 376
|||||||
Sbjct: 4176856 ctgcgcc 4176850
>gb|CH401164.1| Oryza sativa (japonica cultivar-group) chromosome 1 scaffold000001 genomic
scaffold, whole genome shotgun sequence
Length = 11616395
Score = 212 bits (107), Expect = 2e-052
Identities = 302/367 (82%)
Strand = Plus / Minus
Query: 10 catcaacaacggcctcgactcctgcgtcccgccggaggtcggcttgctccgggaggtgac 69
|||||||| |||||| ||||||| | |||||||||||||| |||| || ||||||||
Sbjct: 4216802 catcaacacgggcctcagctcctgcctgccgccggaggtcgggatgctgcgagaggtgac 4216743
Query: 70 cgtcttcgacgtcagcttcaactcgctcgttggcccgctgccgcagcaggtggccgggat 129
|| |||||||| ||||||||| ||||| |||||||||||| | ||||||||||||
Sbjct: 4216742 ggtgttcgacgtgagcttcaaccggctcgccggcccgctgccgtcggcggtggccgggat 4216683
Query: 130 gcgcaaggtggagcagctggacgtcgcgcacaaccgcctgtccggggccgtcccggaggc 189
| | |||||||||||||| |||||||||||||||| || | ||||| | ||| ||||
Sbjct: 4216682 gaggaaggtggagcagctcgacgtcgcgcacaacctgctcacgggggcgataccgcaggc 4216623
Query: 190 catctgcgccctcccgcggctcaagaacctgaccatctcctacaacttcttcaccggcga 249
| |||| || ||||| ||||||||| | ||| || | ||||||||||||||||||||
Sbjct: 4216622 ggtgtgcgagctgccgcgcctcaagaacttcaccttcgcgtacaacttcttcaccggcga 4216563
Query: 250 gccgccgtcctgcgcgcgcgtcgtgccttcggacggtgacaggaggaactgcctgcccaa 309
||||||||||||||||| || |||||| |||| ||| |||||||||||||||||||
Sbjct: 4216562 gccgccgtcctgcgcgcacgccgtgccgcgctacggcgaccggaggaactgcctgcccaa 4216503
Query: 310 ccgccccacacagcgcacgccgcagcagtgcgccgcgttctactcgcagccgcccgtcga 369
||||||| | ||||| |||| || ||||||||||||||||| | ||| || |||||| |
Sbjct: 4216502 ccgccccgcccagcggacgctgcggcagtgcgccgcgttcttcgcgcgccctcccgtcaa 4216443
Query: 370 ctgcgcc 376
|||||||
Sbjct: 4216442 ctgcgcc 4216436
>gb|CM000138.1| Oryza sativa (japonica cultivar-group) chromosome 1, whole genome shotgun
sequence
Length = 42596331
Score = 212 bits (107), Expect = 2e-052
Identities = 302/367 (82%)
Strand = Plus / Minus
Query: 10 catcaacaacggcctcgactcctgcgtcccgccggaggtcggcttgctccgggaggtgac 69
|||||||| |||||| ||||||| | |||||||||||||| |||| || ||||||||
Sbjct: 4216802 catcaacacgggcctcagctcctgcctgccgccggaggtcgggatgctgcgagaggtgac 4216743
Query: 70 cgtcttcgacgtcagcttcaactcgctcgttggcccgctgccgcagcaggtggccgggat 129
|| |||||||| ||||||||| ||||| |||||||||||| | ||||||||||||
Sbjct: 4216742 ggtgttcgacgtgagcttcaaccggctcgccggcccgctgccgtcggcggtggccgggat 4216683
Query: 130 gcgcaaggtggagcagctggacgtcgcgcacaaccgcctgtccggggccgtcccggaggc 189
| | |||||||||||||| |||||||||||||||| || | ||||| | ||| ||||
Sbjct: 4216682 gaggaaggtggagcagctcgacgtcgcgcacaacctgctcacgggggcgataccgcaggc 4216623
Query: 190 catctgcgccctcccgcggctcaagaacctgaccatctcctacaacttcttcaccggcga 249
| |||| || ||||| ||||||||| | ||| || | ||||||||||||||||||||
Sbjct: 4216622 ggtgtgcgagctgccgcgcctcaagaacttcaccttcgcgtacaacttcttcaccggcga 4216563
Query: 250 gccgccgtcctgcgcgcgcgtcgtgccttcggacggtgacaggaggaactgcctgcccaa 309
||||||||||||||||| || |||||| |||| ||| |||||||||||||||||||
Sbjct: 4216562 gccgccgtcctgcgcgcacgccgtgccgcgctacggcgaccggaggaactgcctgcccaa 4216503
Query: 310 ccgccccacacagcgcacgccgcagcagtgcgccgcgttctactcgcagccgcccgtcga 369
||||||| | ||||| |||| || ||||||||||||||||| | ||| || |||||| |
Sbjct: 4216502 ccgccccgcccagcggacgctgcggcagtgcgccgcgttcttcgcgcgccctcccgtcaa 4216443
Query: 370 ctgcgcc 376
|||||||
Sbjct: 4216442 ctgcgcc 4216436
Score = 73.8 bits (37), Expect = 1e-010
Identities = 97/117 (82%)
Strand = Plus / Plus
Query: 140 gagcagctggacgtcgcgcacaaccgcctgtccggggccgtcccggaggccatctgcgcc 199
|||||||| ||| ||| |||||||||||| |||| | ||| ||||||| ||||||| |
Sbjct: 22816267 gagcagctcgacctcgggcacaaccgcctcaccggcgacgtgccggagggcatctgccac 22816326
Query: 200 ctcccgcggctcaagaacctgaccatctcctacaacttcttcaccggcgagccgccg 256
|| |||| ||| ||||| | ||| ||||||||||||| |||||||||||||||||
Sbjct: 22816327 ctgccgcacctccagaacttcacctactcctacaacttcatcaccggcgagccgccg 22816383
Score = 65.9 bits (33), Expect = 3e-008
Identities = 78/93 (83%)
Strand = Plus / Plus
Query: 72 tcttcgacgtcagcttcaactcgctcgttggcccgctgccgcagcaggtggccgggatgc 131
||||| |||||||||||||||| |||| ||||||||| || | ||||| || ||||||
Sbjct: 41370206 tcttcaacgtcagcttcaactccctcgctggcccgctcccaccagaggtgcccaggatgc 41370265
Query: 132 gcaaggtggagcagctggacgtcgcgcacaacc 164
||||||||| |||| || |||||||||||||
Sbjct: 41370266 agaaggtggagtagctcgatgtcgcgcacaacc 41370298
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43261740
Score = 212 bits (107), Expect = 2e-052
Identities = 302/367 (82%)
Strand = Plus / Minus
Query: 10 catcaacaacggcctcgactcctgcgtcccgccggaggtcggcttgctccgggaggtgac 69
|||||||| |||||| ||||||| | |||||||||||||| |||| || ||||||||
Sbjct: 4179574 catcaacacgggcctcagctcctgcctgccgccggaggtcgggatgctgcgagaggtgac 4179515
Query: 70 cgtcttcgacgtcagcttcaactcgctcgttggcccgctgccgcagcaggtggccgggat 129
|| |||||||| ||||||||| ||||| |||||||||||| | ||||||||||||
Sbjct: 4179514 ggtgttcgacgtgagcttcaaccggctcgccggcccgctgccgtcggcggtggccgggat 4179455
Query: 130 gcgcaaggtggagcagctggacgtcgcgcacaaccgcctgtccggggccgtcccggaggc 189
| | |||||||||||||| |||||||||||||||| || | ||||| | ||| ||||
Sbjct: 4179454 gaggaaggtggagcagctcgacgtcgcgcacaacctgctcacgggggcgataccgcaggc 4179395
Query: 190 catctgcgccctcccgcggctcaagaacctgaccatctcctacaacttcttcaccggcga 249
| |||| || ||||| ||||||||| | ||| || | ||||||||||||||||||||
Sbjct: 4179394 ggtgtgcgagctgccgcgcctcaagaacttcaccttcgcgtacaacttcttcaccggcga 4179335
Query: 250 gccgccgtcctgcgcgcgcgtcgtgccttcggacggtgacaggaggaactgcctgcccaa 309
||||||||||||||||| || |||||| |||| ||| |||||||||||||||||||
Sbjct: 4179334 gccgccgtcctgcgcgcacgccgtgccgcgctacggcgaccggaggaactgcctgcccaa 4179275
Query: 310 ccgccccacacagcgcacgccgcagcagtgcgccgcgttctactcgcagccgcccgtcga 369
||||||| | ||||| |||| || ||||||||||||||||| | ||| || |||||| |
Sbjct: 4179274 ccgccccgcccagcggacgctgcggcagtgcgccgcgttcttcgcgcgccctcccgtcaa 4179215
Query: 370 ctgcgcc 376
|||||||
Sbjct: 4179214 ctgcgcc 4179208
Score = 73.8 bits (37), Expect = 1e-010
Identities = 97/117 (82%)
Strand = Plus / Plus
Query: 140 gagcagctggacgtcgcgcacaaccgcctgtccggggccgtcccggaggccatctgcgcc 199
|||||||| ||| ||| |||||||||||| |||| | ||| ||||||| ||||||| |
Sbjct: 23282341 gagcagctcgacctcgggcacaaccgcctcaccggcgacgtgccggagggcatctgccac 23282400
Query: 200 ctcccgcggctcaagaacctgaccatctcctacaacttcttcaccggcgagccgccg 256
|| |||| ||| ||||| | ||| ||||||||||||| |||||||||||||||||
Sbjct: 23282401 ctgccgcacctccagaacttcacctactcctacaacttcatcaccggcgagccgccg 23282457
Score = 65.9 bits (33), Expect = 3e-008
Identities = 78/93 (83%)
Strand = Plus / Plus
Query: 72 tcttcgacgtcagcttcaactcgctcgttggcccgctgccgcagcaggtggccgggatgc 131
||||| |||||||||||||||| |||| ||||||||| || | ||||| || ||||||
Sbjct: 41973449 tcttcaacgtcagcttcaactccctcgctggcccgctcccaccagaggtgcccaggatgc 41973508
Query: 132 gcaaggtggagcagctggacgtcgcgcacaacc 164
||||||||| |||| || |||||||||||||
Sbjct: 41973509 agaaggtggagtagctcgatgtcgcgcacaacc 41973541
>gb|CB657603.1|CB657603 OSJNEc13B13.r OSJNEc Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEc13B13 3', mRNA sequence
Length = 803
Score = 73.8 bits (37), Expect = 1e-010
Identities = 97/117 (82%)
Strand = Plus / Minus
Query: 138 tggagcagctggacgtcgcgcacaaccgcctgtccggggccgtcccggaggccatctgcg 197
|||||||||| |||||||||||||| |||| |||| | ||||||| |||||||||
Sbjct: 502 tggagcagctcaacgtcgcgcacaacggcctcgccggcgagatcccggactccatctgcg 443
Query: 198 ccctcccgcggctcaagaacctgaccatctcctacaacttcttcaccggcgagccgc 254
||||||||| ||||||||| | ||| |||| ||||||||||| |||||||||||
Sbjct: 442 ccctcccgcacctcaagaacttcacctactcccacaacttcttctgcggcgagccgc 386
>dbj|AP004122.1| Oryza sativa (japonica cultivar-group) chromosome 2 clone OJ1616_E07,
*** SEQUENCING IN PROGRESS ***
Length = 99676
Score = 73.8 bits (37), Expect = 1e-010
Identities = 79/93 (84%)
Strand = Plus / Minus
Query: 72 tcttcgacgtcagcttcaactcgctcgttggcccgctgccgcagcaggtggccgggatgc 131
||||| |||| ||||||||||| |||| ||||||||| || | | ||||| |||||||||
Sbjct: 21988 tcttcaacgttagcttcaactccctcgctggcccgctcccaccggaggtgcccgggatgc 21929
Query: 132 gcaaggtggagcagctggacgtcgcgcacaacc 164
||||||||| |||| || |||||||||||||
Sbjct: 21928 agaaggtggagtagctcgatgtcgcgcacaacc 21896
>dbj|AK064239.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-105-A10, full
insert sequence
Length = 1408
Score = 73.8 bits (37), Expect = 1e-010
Identities = 97/117 (82%)
Strand = Plus / Plus
Query: 138 tggagcagctggacgtcgcgcacaaccgcctgtccggggccgtcccggaggccatctgcg 197
|||||||||| |||||||||||||| |||| |||| | ||||||| |||||||||
Sbjct: 975 tggagcagctcaacgtcgcgcacaacggcctcgccggcgagatcccggactccatctgcg 1034
Query: 198 ccctcccgcggctcaagaacctgaccatctcctacaacttcttcaccggcgagccgc 254
||||||||| ||||||||| | ||| |||| ||||||||||| |||||||||||
Sbjct: 1035 ccctcccgcacctcaagaacttcacctactcccacaacttcttctgcggcgagccgc 1091
>dbj|AK105266.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-115-D06, full
insert sequence
Length = 2042
Score = 73.8 bits (37), Expect = 1e-010
Identities = 97/117 (82%)
Strand = Plus / Plus
Query: 140 gagcagctggacgtcgcgcacaaccgcctgtccggggccgtcccggaggccatctgcgcc 199
|||||||| ||| ||| |||||||||||| |||| | ||| ||||||| ||||||| |
Sbjct: 992 gagcagctcgacctcgggcacaaccgcctcaccggcgacgtgccggagggcatctgccac 1051
Query: 200 ctcccgcggctcaagaacctgaccatctcctacaacttcttcaccggcgagccgccg 256
|| |||| ||| ||||| | ||| ||||||||||||| |||||||||||||||||
Sbjct: 1052 ctgccgcacctccagaacttcacctactcctacaacttcatcaccggcgagccgccg 1108
>dbj|AK105670.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-201-A04, full
insert sequence
Length = 1985
Score = 73.8 bits (37), Expect = 1e-010
Identities = 97/117 (82%)
Strand = Plus / Plus
Query: 140 gagcagctggacgtcgcgcacaaccgcctgtccggggccgtcccggaggccatctgcgcc 199
|||||||| ||| ||| |||||||||||| |||| | ||| ||||||| ||||||| |
Sbjct: 993 gagcagctcgacctcgggcacaaccgcctcaccggcgacgtgccggagggcatctgccac 1052
Query: 200 ctcccgcggctcaagaacctgaccatctcctacaacttcttcaccggcgagccgccg 256
|| |||| ||| ||||| | ||| ||||||||||||| |||||||||||||||||
Sbjct: 1053 ctgccgcacctccagaacttcacctactcctacaacttcatcaccggcgagccgccg 1109
>dbj|AP005771.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
clone:OSJNBa0069D13
Length = 157088
Score = 73.8 bits (37), Expect = 1e-010
Identities = 79/93 (84%)
Strand = Plus / Plus
Query: 72 tcttcgacgtcagcttcaactcgctcgttggcccgctgccgcagcaggtggccgggatgc 131
||||| |||| ||||||||||| |||| ||||||||| || | | ||||| |||||||||
Sbjct: 148284 tcttcaacgttagcttcaactccctcgctggcccgctcccaccggaggtgcccgggatgc 148343
Query: 132 gcaaggtggagcagctggacgtcgcgcacaacc 164
||||||||| |||| || |||||||||||||
Sbjct: 148344 agaaggtggagtagctcgatgtcgcgcacaacc 148376
>dbj|AP005611.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
clone:OSJNBa0051E21
Length = 137959
Score = 73.8 bits (37), Expect = 1e-010
Identities = 79/93 (84%)
Strand = Plus / Plus
Query: 72 tcttcgacgtcagcttcaactcgctcgttggcccgctgccgcagcaggtggccgggatgc 131
||||| |||| ||||||||||| |||| ||||||||| || | | ||||| |||||||||
Sbjct: 1418 tcttcaacgttagcttcaactccctcgctggcccgctcccaccggaggtgcccgggatgc 1477
Query: 132 gcaaggtggagcagctggacgtcgcgcacaacc 164
||||||||| |||| || |||||||||||||
Sbjct: 1478 agaaggtggagtagctcgatgtcgcgcacaacc 1510
>gb|AC092076.7| Oryza sativa chromosome 3 BAC OSJNBb0021G19 genomic sequence, complete
sequence
Length = 141582
Score = 73.8 bits (37), Expect = 1e-010
Identities = 97/117 (82%)
Strand = Plus / Plus
Query: 138 tggagcagctggacgtcgcgcacaaccgcctgtccggggccgtcccggaggccatctgcg 197
|||||||||| |||||||||||||| |||| |||| | ||||||| |||||||||
Sbjct: 99154 tggagcagctcaacgtcgcgcacaacggcctcgccggcgagatcccggactccatctgcg 99213
Query: 198 ccctcccgcggctcaagaacctgaccatctcctacaacttcttcaccggcgagccgc 254
||||||||| ||||||||| | ||| |||| ||||||||||| |||||||||||
Sbjct: 99214 ccctcccgcacctcaagaacttcacctactcccacaacttcttctgcggcgagccgc 99270
>dbj|AP005420.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
clone:P0418B08
Length = 165909
Score = 73.8 bits (37), Expect = 1e-010
Identities = 79/93 (84%)
Strand = Plus / Minus
Query: 72 tcttcgacgtcagcttcaactcgctcgttggcccgctgccgcagcaggtggccgggatgc 131
||||| |||||||||||||||| |||| ||||||||| || | | ||||| ||||||||
Sbjct: 97373 tcttcaacgtcagcttcaactccctcgctggcccgctcccaccggaggtgcccgggatgt 97314
Query: 132 gcaaggtggagcagctggacgtcgcgcacaacc 164
||||||||| |||| || |||||||||||||
Sbjct: 97313 agaaggtggagtagctcgatgtcgcgcacaacc 97281
>dbj|AP003333.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
clone:B1103C09
Length = 163996
Score = 73.8 bits (37), Expect = 1e-010
Identities = 97/117 (82%)
Strand = Plus / Plus
Query: 140 gagcagctggacgtcgcgcacaaccgcctgtccggggccgtcccggaggccatctgcgcc 199
|||||||| ||| ||| |||||||||||| |||| | ||| ||||||| ||||||| |
Sbjct: 8039 gagcagctcgacctcgggcacaaccgcctcaccggcgacgtgccggagggcatctgccac 8098
Query: 200 ctcccgcggctcaagaacctgaccatctcctacaacttcttcaccggcgagccgccg 256
|| |||| ||| ||||| | ||| ||||||||||||| |||||||||||||||||
Sbjct: 8099 ctgccgcacctccagaacttcacctactcctacaacttcatcaccggcgagccgccg 8155
>dbj|AP003253.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
clone:P0451D05
Length = 148381
Score = 73.8 bits (37), Expect = 1e-010
Identities = 97/117 (82%)
Strand = Plus / Plus
Query: 140 gagcagctggacgtcgcgcacaaccgcctgtccggggccgtcccggaggccatctgcgcc 199
|||||||| ||| ||| |||||||||||| |||| | ||| ||||||| ||||||| |
Sbjct: 69083 gagcagctcgacctcgggcacaaccgcctcaccggcgacgtgccggagggcatctgccac 69142
Query: 200 ctcccgcggctcaagaacctgaccatctcctacaacttcttcaccggcgagccgccg 256
|| |||| ||| ||||| | ||| ||||||||||||| |||||||||||||||||
Sbjct: 69143 ctgccgcacctccagaacttcacctactcctacaacttcatcaccggcgagccgccg 69199
>gb|AACV01001725.1| Oryza sativa (japonica cultivar-group) chromosome 1 Ctg001725, whole
genome shotgun sequence
Length = 24955
Score = 73.8 bits (37), Expect = 1e-010
Identities = 97/117 (82%)
Strand = Plus / Minus
Query: 140 gagcagctggacgtcgcgcacaaccgcctgtccggggccgtcccggaggccatctgcgcc 199
|||||||| ||| ||| |||||||||||| |||| | ||| ||||||| ||||||| |
Sbjct: 1973 gagcagctcgacctcgggcacaaccgcctcaccggcgacgtgccggagggcatctgccac 1914
Query: 200 ctcccgcggctcaagaacctgaccatctcctacaacttcttcaccggcgagccgccg 256
|| |||| ||| ||||| | ||| ||||||||||||| |||||||||||||||||
Sbjct: 1913 ctgccgcacctccagaacttcacctactcctacaacttcatcaccggcgagccgccg 1857
>gb|AACV01004635.1| Oryza sativa (japonica cultivar-group) chromosome 2 Ctg004635, whole
genome shotgun sequence
Length = 36223
Score = 73.8 bits (37), Expect = 1e-010
Identities = 79/93 (84%)
Strand = Plus / Plus
Query: 72 tcttcgacgtcagcttcaactcgctcgttggcccgctgccgcagcaggtggccgggatgc 131
||||| |||| ||||||||||| |||| ||||||||| || | | ||||| |||||||||
Sbjct: 18085 tcttcaacgttagcttcaactccctcgctggcccgctcccaccggaggtgcccgggatgc 18144
Query: 132 gcaaggtggagcagctggacgtcgcgcacaacc 164
||||||||| |||| || |||||||||||||
Sbjct: 18145 agaaggtggagtagctcgatgtcgcgcacaacc 18177
>gb|AACV01020014.1| Oryza sativa (japonica cultivar-group) chromosome 9 Ctg020014, whole
genome shotgun sequence
Length = 37295
Score = 73.8 bits (37), Expect = 1e-010
Identities = 79/93 (84%)
Strand = Plus / Plus
Query: 72 tcttcgacgtcagcttcaactcgctcgttggcccgctgccgcagcaggtggccgggatgc 131
||||| |||||||||||||||| |||| ||||||||| || | | ||||| ||||||||
Sbjct: 2568 tcttcaacgtcagcttcaactccctcgctggcccgctcccaccggaggtgcccgggatgt 2627
Query: 132 gcaaggtggagcagctggacgtcgcgcacaacc 164
||||||||| |||| || |||||||||||||
Sbjct: 2628 agaaggtggagtagctcgatgtcgcgcacaacc 2660
>ref|NM_192605.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 1713
Score = 73.8 bits (37), Expect = 1e-010
Identities = 97/117 (82%)
Strand = Plus / Plus
Query: 140 gagcagctggacgtcgcgcacaaccgcctgtccggggccgtcccggaggccatctgcgcc 199
|||||||| ||| ||| |||||||||||| |||| | ||| ||||||| ||||||| |
Sbjct: 934 gagcagctcgacctcgggcacaaccgcctcaccggcgacgtgccggagggcatctgccac 993
Query: 200 ctcccgcggctcaagaacctgaccatctcctacaacttcttcaccggcgagccgccg 256
|| |||| ||| ||||| | ||| ||||||||||||| |||||||||||||||||
Sbjct: 994 ctgccgcacctccagaacttcacctactcctacaacttcatcaccggcgagccgccg 1050
>ref|XM_466115.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 657
Score = 73.8 bits (37), Expect = 1e-010
Identities = 79/93 (84%)
Strand = Plus / Plus
Query: 72 tcttcgacgtcagcttcaactcgctcgttggcccgctgccgcagcaggtggccgggatgc 131
||||| |||| ||||||||||| |||| ||||||||| || | | ||||| |||||||||
Sbjct: 148 tcttcaacgttagcttcaactccctcgctggcccgctcccaccggaggtgcccgggatgc 207
Query: 132 gcaaggtggagcagctggacgtcgcgcacaacc 164
||||||||| |||| || |||||||||||||
Sbjct: 208 agaaggtggagtagctcgatgtcgcgcacaacc 240
>ref|NT_079926.2| Oryza sativa (japonica cultivar-group)
Length = 8469246
Score = 73.8 bits (37), Expect = 1e-010
Identities = 97/117 (82%)
Strand = Plus / Plus
Query: 140 gagcagctggacgtcgcgcacaaccgcctgtccggggccgtcccggaggccatctgcgcc 199
|||||||| ||| ||| |||||||||||| |||| | ||| ||||||| ||||||| |
Sbjct: 6279290 gagcagctcgacctcgggcacaaccgcctcaccggcgacgtgccggagggcatctgccac 6279349
Query: 200 ctcccgcggctcaagaacctgaccatctcctacaacttcttcaccggcgagccgccg 256
|| |||| ||| ||||| | ||| ||||||||||||| |||||||||||||||||
Sbjct: 6279350 ctgccgcacctccagaacttcacctactcctacaacttcatcaccggcgagccgccg 6279406
>ref|NT_107084.1| Oryza sativa (japonica cultivar-group)
Length = 4175757
Score = 73.8 bits (37), Expect = 1e-010
Identities = 79/93 (84%)
Strand = Plus / Minus
Query: 72 tcttcgacgtcagcttcaactcgctcgttggcccgctgccgcagcaggtggccgggatgc 131
||||| |||||||||||||||| |||| ||||||||| || | | ||||| ||||||||
Sbjct: 1009987 tcttcaacgtcagcttcaactccctcgctggcccgctcccaccggaggtgcccgggatgt 1009928
Query: 132 gcaaggtggagcagctggacgtcgcgcacaacc 164
||||||||| |||| || |||||||||||||
Sbjct: 1009927 agaaggtggagtagctcgatgtcgcgcacaacc 1009895
>ref|NT_107187.1| Oryza sativa (japonica cultivar-group)
Length = 2541880
Score = 73.8 bits (37), Expect = 1e-010
Identities = 97/117 (82%)
Strand = Plus / Minus
Query: 138 tggagcagctggacgtcgcgcacaaccgcctgtccggggccgtcccggaggccatctgcg 197
|||||||||| |||||||||||||| |||| |||| | ||||||| |||||||||
Sbjct: 1959771 tggagcagctcaacgtcgcgcacaacggcctcgccggcgagatcccggactccatctgcg 1959712
Query: 198 ccctcccgcggctcaagaacctgaccatctcctacaacttcttcaccggcgagccgc 254
||||||||| ||||||||| | ||| |||| ||||||||||| |||||||||||
Sbjct: 1959711 ccctcccgcacctcaagaacttcacctactcccacaacttcttctgcggcgagccgc 1959655
>ref|NT_107180.1| Oryza sativa (japonica cultivar-group)
Length = 6019143
Score = 73.8 bits (37), Expect = 1e-010
Identities = 79/93 (84%)
Strand = Plus / Plus
Query: 72 tcttcgacgtcagcttcaactcgctcgttggcccgctgccgcagcaggtggccgggatgc 131
||||| |||| ||||||||||| |||| ||||||||| || | | ||||| |||||||||
Sbjct: 1690102 tcttcaacgttagcttcaactccctcgctggcccgctcccaccggaggtgcccgggatgc 1690161
Query: 132 gcaaggtggagcagctggacgtcgcgcacaacc 164
||||||||| |||| || |||||||||||||
Sbjct: 1690162 agaaggtggagtagctcgatgtcgcgcacaacc 1690194
>gb|CH401242.1| Oryza sativa (japonica cultivar-group) chromosome 9 scaffold000079 genomic
scaffold, whole genome shotgun sequence
Length = 12069826
Score = 73.8 bits (37), Expect = 1e-010
Identities = 79/93 (84%)
Strand = Plus / Minus
Query: 72 tcttcgacgtcagcttcaactcgctcgttggcccgctgccgcagcaggtggccgggatgc 131
||||| |||||||||||||||| |||| ||||||||| || | | ||||| ||||||||
Sbjct: 4632802 tcttcaacgtcagcttcaactccctcgctggcccgctcccaccggaggtgcccgggatgt 4632743
Query: 132 gcaaggtggagcagctggacgtcgcgcacaacc 164
||||||||| |||| || |||||||||||||
Sbjct: 4632742 agaaggtggagtagctcgatgtcgcgcacaacc 4632710
>gb|CH401170.1| Oryza sativa (japonica cultivar-group) chromosome 2 scaffold000007 genomic
scaffold, whole genome shotgun sequence
Length = 22563205
Score = 73.8 bits (37), Expect = 1e-010
Identities = 79/93 (84%)
Strand = Plus / Plus
Query: 72 tcttcgacgtcagcttcaactcgctcgttggcccgctgccgcagcaggtggccgggatgc 131
||||| |||| ||||||||||| |||| ||||||||| || | | ||||| |||||||||
Sbjct: 6904280 tcttcaacgttagcttcaactccctcgctggcccgctcccaccggaggtgcccgggatgc 6904339
Query: 132 gcaaggtggagcagctggacgtcgcgcacaacc 164
||||||||| |||| || |||||||||||||
Sbjct: 6904340 agaaggtggagtagctcgatgtcgcgcacaacc 6904372
>gb|CH401166.1| Oryza sativa (japonica cultivar-group) chromosome 1 scaffold000003 genomic
scaffold, whole genome shotgun sequence
Length = 8539496
Score = 73.8 bits (37), Expect = 1e-010
Identities = 97/117 (82%)
Strand = Plus / Plus
Query: 140 gagcagctggacgtcgcgcacaaccgcctgtccggggccgtcccggaggccatctgcgcc 199
|||||||| ||| ||| |||||||||||| |||| | ||| ||||||| ||||||| |
Sbjct: 6191144 gagcagctcgacctcgggcacaaccgcctcaccggcgacgtgccggagggcatctgccac 6191203
Query: 200 ctcccgcggctcaagaacctgaccatctcctacaacttcttcaccggcgagccgccg 256
|| |||| ||| ||||| | ||| ||||||||||||| |||||||||||||||||
Sbjct: 6191204 ctgccgcacctccagaacttcacctactcctacaacttcatcaccggcgagccgccg 6191260
>gb|CM000146.1| Oryza sativa (japonica cultivar-group) chromosome 9, whole genome shotgun
sequence
Length = 21543637
Score = 73.8 bits (37), Expect = 1e-010
Identities = 79/93 (84%)
Strand = Plus / Minus
Query: 72 tcttcgacgtcagcttcaactcgctcgttggcccgctgccgcagcaggtggccgggatgc 131
||||| |||||||||||||||| |||| ||||||||| || | | ||||| ||||||||
Sbjct: 14106613 tcttcaacgtcagcttcaactccctcgctggcccgctcccaccggaggtgcccgggatgt 14106554
Query: 132 gcaaggtggagcagctggacgtcgcgcacaacc 164
||||||||| |||| || |||||||||||||
Sbjct: 14106553 agaaggtggagtagctcgatgtcgcgcacaacc 14106521
>gb|CM000139.1| Oryza sativa (japonica cultivar-group) chromosome 2, whole genome shotgun
sequence
Length = 36016269
Score = 73.8 bits (37), Expect = 1e-010
Identities = 79/93 (84%)
Strand = Plus / Plus
Query: 72 tcttcgacgtcagcttcaactcgctcgttggcccgctgccgcagcaggtggccgggatgc 131
||||| |||| ||||||||||| |||| ||||||||| || | | ||||| |||||||||
Sbjct: 20357344 tcttcaacgttagcttcaactccctcgctggcccgctcccaccggaggtgcccgggatgc 20357403
Query: 132 gcaaggtggagcagctggacgtcgcgcacaacc 164
||||||||| |||| || |||||||||||||
Sbjct: 20357404 agaaggtggagtagctcgatgtcgcgcacaacc 20357436
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
sequence
Length = 35954743
Score = 73.8 bits (37), Expect = 1e-010
Identities = 79/93 (84%)
Strand = Plus / Plus
Query: 72 tcttcgacgtcagcttcaactcgctcgttggcccgctgccgcagcaggtggccgggatgc 131
||||| |||| ||||||||||| |||| ||||||||| || | | ||||| |||||||||
Sbjct: 20505860 tcttcaacgttagcttcaactccctcgctggcccgctcccaccggaggtgcccgggatgc 20505919
Query: 132 gcaaggtggagcagctggacgtcgcgcacaacc 164
||||||||| |||| || |||||||||||||
Sbjct: 20505920 agaaggtggagtagctcgatgtcgcgcacaacc 20505952
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
sequence
Length = 36192742
Score = 73.8 bits (37), Expect = 1e-010
Identities = 97/117 (82%)
Strand = Plus / Minus
Query: 138 tggagcagctggacgtcgcgcacaaccgcctgtccggggccgtcccggaggccatctgcg 197
|||||||||| |||||||||||||| |||| |||| | ||||||| |||||||||
Sbjct: 32870897 tggagcagctcaacgtcgcgcacaacggcctcgccggcgagatcccggactccatctgcg 32870838
Query: 198 ccctcccgcggctcaagaacctgaccatctcctacaacttcttcaccggcgagccgc 254
||||||||| ||||||||| | ||| |||| ||||||||||| |||||||||||
Sbjct: 32870837 ccctcccgcacctcaagaacttcacctactcccacaacttcttctgcggcgagccgc 32870781
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
sequence
Length = 22696651
Score = 73.8 bits (37), Expect = 1e-010
Identities = 79/93 (84%)
Strand = Plus / Minus
Query: 72 tcttcgacgtcagcttcaactcgctcgttggcccgctgccgcagcaggtggccgggatgc 131
||||| |||||||||||||||| |||| ||||||||| || | | ||||| ||||||||
Sbjct: 15318184 tcttcaacgtcagcttcaactccctcgctggcccgctcccaccggaggtgcccgggatgt 15318125
Query: 132 gcaaggtggagcagctggacgtcgcgcacaacc 164
||||||||| |||| || |||||||||||||
Sbjct: 15318124 agaaggtggagtagctcgatgtcgcgcacaacc 15318092
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
Length = 36102668
Score = 73.8 bits (37), Expect = 1e-010
Identities = 97/117 (82%)
Strand = Plus / Minus
Query: 138 tggagcagctggacgtcgcgcacaaccgcctgtccggggccgtcccggaggccatctgcg 197
|||||||||| |||||||||||||| |||| |||| | ||||||| |||||||||
Sbjct: 32780387 tggagcagctcaacgtcgcgcacaacggcctcgccggcgagatcccggactccatctgcg 32780328
Query: 198 ccctcccgcggctcaagaacctgaccatctcctacaacttcttcaccggcgagccgc 254
||||||||| ||||||||| | ||| |||| ||||||||||| |||||||||||
Sbjct: 32780327 ccctcccgcacctcaagaacttcacctactcccacaacttcttctgcggcgagccgc 32780271
>dbj|AP004319.1| Oryza sativa (japonica cultivar-group) chromosome 1 clone B1017B03, ***
SEQUENCING IN PROGRESS ***
Length = 145847
Score = 65.9 bits (33), Expect = 3e-008
Identities = 78/93 (83%)
Strand = Plus / Plus
Query: 72 tcttcgacgtcagcttcaactcgctcgttggcccgctgccgcagcaggtggccgggatgc 131
||||| |||||||||||||||| |||| ||||||||| || | ||||| || ||||||
Sbjct: 41888 tcttcaacgtcagcttcaactccctcgctggcccgctcccaccagaggtgcccaggatgc 41947
Query: 132 gcaaggtggagcagctggacgtcgcgcacaacc 164
||||||||| |||| || |||||||||||||
Sbjct: 41948 agaaggtggagtagctcgatgtcgcgcacaacc 41980
>gb|AACV01003056.1| Oryza sativa (japonica cultivar-group) chromosome 1 Ctg003056, whole
genome shotgun sequence
Length = 16280
Score = 65.9 bits (33), Expect = 3e-008
Identities = 78/93 (83%)
Strand = Plus / Minus
Query: 72 tcttcgacgtcagcttcaactcgctcgttggcccgctgccgcagcaggtggccgggatgc 131
||||| |||||||||||||||| |||| ||||||||| || | ||||| || ||||||
Sbjct: 14633 tcttcaacgtcagcttcaactccctcgctggcccgctcccaccagaggtgcccaggatgc 14574
Query: 132 gcaaggtggagcagctggacgtcgcgcacaacc 164
||||||||| |||| || |||||||||||||
Sbjct: 14573 agaaggtggagtagctcgatgtcgcgcacaacc 14541
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 862,005
Number of Sequences: 438736
Number of extensions: 862005
Number of successful extensions: 6178
Number of sequences better than 0.5: 65
Number of HSP's better than 0.5 without gapping: 68
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 5638
Number of HSP's gapped (non-prelim): 508
length of query: 645
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 624
effective length of database: 2,791,206,460
effective search space: 1741712831040
effective search space used: 1741712831040
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)