BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QCS16e03.yg.2.1
(608 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|AK067355.1| Oryza sativa (japonica cultivar-group) cDNA... 371 e-100
dbj|AK067580.1| Oryza sativa (japonica cultivar-group) cDNA... 371 e-100
dbj|AK121135.1| Oryza sativa (japonica cultivar-group) cDNA... 371 e-100
gb|AACV01002960.1| Oryza sativa (japonica cultivar-group) c... 371 e-100
dbj|BA000010.8| Oryza sativa (japonica cultivar-group) geno... 371 e-100
ref|XM_463649.1| Oryza sativa (japonica cultivar-group), p... 371 e-100
ref|NT_079923.2| Oryza sativa (japonica cultivar-group) 371 e-100
dbj|AP004672.3| Oryza sativa (japonica cultivar-group) geno... 371 e-100
dbj|AP006167.3| Oryza sativa (japonica cultivar-group) geno... 371 e-100
gb|CH401168.1| Oryza sativa (japonica cultivar-group) chrom... 371 e-100
gb|CM000138.1| Oryza sativa (japonica cultivar-group) chrom... 371 e-100
dbj|AP008207.1| Oryza sativa (japonica cultivar-group) geno... 371 e-100
gb|D22220.1|D22220 RICC10521A Rice callus Oryza sativa (jap... 299 9e-079
gb|CF304999.1|CF304999 ABF1--06-I06.g1 ABF3-overexpressing ... 276 1e-071
gb|CB649579.1|CB649579 OSJNEb13J09.f OSJNEb Oryza sativa (j... 274 5e-071
gb|CB678613.1|CB678613 OSJNEe16O18.f OSJNEe Oryza sativa (j... 254 5e-065
gb|CF303918.1|CF303918 ABF1--03-J08.g1 ABF3-overexpressing ... 76 2e-011
gb|CV152516.1|CV152516 LS71-S.SEQ Cold stressed rice cDNA l... 50 0.001
gb|AC091532.13| Oryza sativa chromosome 3 BAC OSJNBa0078A17... 50 0.001
dbj|AP005112.3| Oryza sativa (japonica cultivar-group) geno... 50 0.001
gb|AACV01005369.1| Oryza sativa (japonica cultivar-group) c... 50 0.001
gb|AACV01007799.1| Oryza sativa (japonica cultivar-group) c... 50 0.001
ref|XM_467688.1| Oryza sativa (japonica cultivar-group), mRNA 50 0.001
ref|XM_469566.1| Oryza sativa (japonica cultivar-group), mRNA 50 0.001
ref|NT_107181.1| Oryza sativa (japonica cultivar-group) 50 0.001
ref|NT_079916.2| Oryza sativa (japonica cultivar-group) 50 0.001
gb|CH401176.1| Oryza sativa (japonica cultivar-group) chrom... 50 0.001
gb|CH401170.1| Oryza sativa (japonica cultivar-group) chrom... 50 0.001
gb|CM000140.1| Oryza sativa (japonica cultivar-group) chrom... 50 0.001
gb|CM000139.1| Oryza sativa (japonica cultivar-group) chrom... 50 0.001
dbj|AP008208.1| Oryza sativa (japonica cultivar-group) geno... 50 0.001
dbj|AP008209.1| Oryza sativa (japonica cultivar-group) geno... 50 0.001
gb|DP000009.1| Oryza sativa (japonica cultivar-group) chrom... 50 0.001
dbj|AB155292.1| Oryza sativa (japonica cultivar-group) DNA,... 44 0.087
>dbj|AK067355.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013099L13, full
insert sequence
Length = 1829
Score = 371 bits (187), Expect = e-100
Identities = 322/367 (87%)
Strand = Plus / Minus
Query: 24 gtaaccttggcacggaccggcctatgatctaccaccaatgcattgatccctttaaattct 83
|||||||| |||||||| ||||||||||| || |||||||||||||||||||||||||||
Sbjct: 480 gtaacctttgcacggactggcctatgatcaacaaccaatgcattgatccctttaaattct 421
Query: 84 gacgatttattctcatttctgctggaatgggccctcgtaagaaccgcagtgaaggtgaaa 143
|| ||||| | ||||||| || | || |||||| |||| ||||| ||||||||||||
Sbjct: 420 gatgatttgatgtcatttcctttgcagtgtgccctcataagcaccgcggtgaaggtgaaa 361
Query: 144 gtagaaccaacttggggtttacttgcaaatccaatctctcccctcatgagtccaaccaag 203
||||||||||| ||||| ||||||||||| || || |||||| ||||||| |||||||||
Sbjct: 360 gtagaaccaacatggggcttacttgcaaaaccgatttctcccttcatgagaccaaccaag 301
Query: 204 catttgctgatgcttaatccaatgccagtgcccccatggatgcgagcaatggatggacct 263
|| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 300 cacttgctgatgcttaatccaatgccagtgcccccatggatgcgggcaatggatggacct 241
Query: 264 acttgcatgaaaggggtgaagacacgggactgagcatcgaacgggattccaacacccgta 323
|| ||||||||||||||||| |||||||| || || || || ||||| || || || |||
Sbjct: 240 acctgcatgaaaggggtgaacacacgggattgggcttcaaatgggatgccgacgccagta 181
Query: 324 tcttcaactgatattatcaagcttattgagtctgatgcgatgggtgcaaaaggcatctca 383
|||||||| ||||| | |||||||||||| || ||||||||||| ||||||| | |||||
Sbjct: 180 tcttcaacagatataaccaagcttattgaatcagatgcgatgggcgcaaaagacttctca 121
Query: 384 gatgagt 390
|||||||
Sbjct: 120 gatgagt 114
>dbj|AK067580.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013112K17, full
insert sequence
Length = 2629
Score = 371 bits (187), Expect = e-100
Identities = 322/367 (87%)
Strand = Plus / Minus
Query: 24 gtaaccttggcacggaccggcctatgatctaccaccaatgcattgatccctttaaattct 83
|||||||| |||||||| ||||||||||| || |||||||||||||||||||||||||||
Sbjct: 1225 gtaacctttgcacggactggcctatgatcaacaaccaatgcattgatccctttaaattct 1166
Query: 84 gacgatttattctcatttctgctggaatgggccctcgtaagaaccgcagtgaaggtgaaa 143
|| ||||| | ||||||| || | || |||||| |||| ||||| ||||||||||||
Sbjct: 1165 gatgatttgatgtcatttcctttgcagtgtgccctcataagcaccgcggtgaaggtgaaa 1106
Query: 144 gtagaaccaacttggggtttacttgcaaatccaatctctcccctcatgagtccaaccaag 203
||||||||||| ||||| ||||||||||| || || |||||| ||||||| |||||||||
Sbjct: 1105 gtagaaccaacatggggcttacttgcaaaaccgatttctcccttcatgagaccaaccaag 1046
Query: 204 catttgctgatgcttaatccaatgccagtgcccccatggatgcgagcaatggatggacct 263
|| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 1045 cacttgctgatgcttaatccaatgccagtgcccccatggatgcgggcaatggatggacct 986
Query: 264 acttgcatgaaaggggtgaagacacgggactgagcatcgaacgggattccaacacccgta 323
|| ||||||||||||||||| |||||||| || || || || ||||| || || || |||
Sbjct: 985 acctgcatgaaaggggtgaacacacgggattgggcttcaaatgggatgccgacgccagta 926
Query: 324 tcttcaactgatattatcaagcttattgagtctgatgcgatgggtgcaaaaggcatctca 383
|||||||| ||||| | |||||||||||| || ||||||||||| ||||||| | |||||
Sbjct: 925 tcttcaacagatataaccaagcttattgaatcagatgcgatgggcgcaaaagacttctca 866
Query: 384 gatgagt 390
|||||||
Sbjct: 865 gatgagt 859
>dbj|AK121135.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023077D19, full
insert sequence
Length = 4044
Score = 371 bits (187), Expect = e-100
Identities = 322/367 (87%)
Strand = Plus / Minus
Query: 24 gtaaccttggcacggaccggcctatgatctaccaccaatgcattgatccctttaaattct 83
|||||||| |||||||| ||||||||||| || |||||||||||||||||||||||||||
Sbjct: 2644 gtaacctttgcacggactggcctatgatcaacaaccaatgcattgatccctttaaattct 2585
Query: 84 gacgatttattctcatttctgctggaatgggccctcgtaagaaccgcagtgaaggtgaaa 143
|| ||||| | ||||||| || | || |||||| |||| ||||| ||||||||||||
Sbjct: 2584 gatgatttgatgtcatttcctttgcagtgtgccctcataagcaccgcggtgaaggtgaaa 2525
Query: 144 gtagaaccaacttggggtttacttgcaaatccaatctctcccctcatgagtccaaccaag 203
||||||||||| ||||| ||||||||||| || || |||||| ||||||| |||||||||
Sbjct: 2524 gtagaaccaacatggggcttacttgcaaaaccgatttctcccttcatgagaccaaccaag 2465
Query: 204 catttgctgatgcttaatccaatgccagtgcccccatggatgcgagcaatggatggacct 263
|| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 2464 cacttgctgatgcttaatccaatgccagtgcccccatggatgcgggcaatggatggacct 2405
Query: 264 acttgcatgaaaggggtgaagacacgggactgagcatcgaacgggattccaacacccgta 323
|| ||||||||||||||||| |||||||| || || || || ||||| || || || |||
Sbjct: 2404 acctgcatgaaaggggtgaacacacgggattgggcttcaaatgggatgccgacgccagta 2345
Query: 324 tcttcaactgatattatcaagcttattgagtctgatgcgatgggtgcaaaaggcatctca 383
|||||||| ||||| | |||||||||||| || ||||||||||| ||||||| | |||||
Sbjct: 2344 tcttcaacagatataaccaagcttattgaatcagatgcgatgggcgcaaaagacttctca 2285
Query: 384 gatgagt 390
|||||||
Sbjct: 2284 gatgagt 2278
>gb|AACV01002960.1| Oryza sativa (japonica cultivar-group) chromosome 1 Ctg002960, whole
genome shotgun sequence
Length = 37306
Score = 371 bits (187), Expect = e-100
Identities = 322/367 (87%)
Strand = Plus / Minus
Query: 24 gtaaccttggcacggaccggcctatgatctaccaccaatgcattgatccctttaaattct 83
|||||||| |||||||| ||||||||||| || |||||||||||||||||||||||||||
Sbjct: 16070 gtaacctttgcacggactggcctatgatcaacaaccaatgcattgatccctttaaattct 16011
Query: 84 gacgatttattctcatttctgctggaatgggccctcgtaagaaccgcagtgaaggtgaaa 143
|| ||||| | ||||||| || | || |||||| |||| ||||| ||||||||||||
Sbjct: 16010 gatgatttgatgtcatttcctttgcagtgtgccctcataagcaccgcggtgaaggtgaaa 15951
Query: 144 gtagaaccaacttggggtttacttgcaaatccaatctctcccctcatgagtccaaccaag 203
||||||||||| ||||| ||||||||||| || || |||||| ||||||| |||||||||
Sbjct: 15950 gtagaaccaacatggggcttacttgcaaaaccgatttctcccttcatgagaccaaccaag 15891
Query: 204 catttgctgatgcttaatccaatgccagtgcccccatggatgcgagcaatggatggacct 263
|| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 15890 cacttgctgatgcttaatccaatgccagtgcccccatggatgcgggcaatggatggacct 15831
Query: 264 acttgcatgaaaggggtgaagacacgggactgagcatcgaacgggattccaacacccgta 323
|| ||||||||||||||||| |||||||| || || || || ||||| || || || |||
Sbjct: 15830 acctgcatgaaaggggtgaacacacgggattgggcttcaaatgggatgccgacgccagta 15771
Query: 324 tcttcaactgatattatcaagcttattgagtctgatgcgatgggtgcaaaaggcatctca 383
|||||||| ||||| | |||||||||||| || ||||||||||| ||||||| | |||||
Sbjct: 15770 tcttcaacagatataaccaagcttattgaatcagatgcgatgggcgcaaaagacttctca 15711
Query: 384 gatgagt 390
|||||||
Sbjct: 15710 gatgagt 15704
>dbj|BA000010.8| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43342410
Score = 371 bits (187), Expect = e-100
Identities = 322/367 (87%)
Strand = Plus / Plus
Query: 24 gtaaccttggcacggaccggcctatgatctaccaccaatgcattgatccctttaaattct 83
|||||||| |||||||| ||||||||||| || |||||||||||||||||||||||||||
Sbjct: 40478883 gtaacctttgcacggactggcctatgatcaacaaccaatgcattgatccctttaaattct 40478942
Query: 84 gacgatttattctcatttctgctggaatgggccctcgtaagaaccgcagtgaaggtgaaa 143
|| ||||| | ||||||| || | || |||||| |||| ||||| ||||||||||||
Sbjct: 40478943 gatgatttgatgtcatttcctttgcagtgtgccctcataagcaccgcggtgaaggtgaaa 40479002
Query: 144 gtagaaccaacttggggtttacttgcaaatccaatctctcccctcatgagtccaaccaag 203
||||||||||| ||||| ||||||||||| || || |||||| ||||||| |||||||||
Sbjct: 40479003 gtagaaccaacatggggcttacttgcaaaaccgatttctcccttcatgagaccaaccaag 40479062
Query: 204 catttgctgatgcttaatccaatgccagtgcccccatggatgcgagcaatggatggacct 263
|| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 40479063 cacttgctgatgcttaatccaatgccagtgcccccatggatgcgggcaatggatggacct 40479122
Query: 264 acttgcatgaaaggggtgaagacacgggactgagcatcgaacgggattccaacacccgta 323
|| ||||||||||||||||| |||||||| || || || || ||||| || || || |||
Sbjct: 40479123 acctgcatgaaaggggtgaacacacgggattgggcttcaaatgggatgccgacgccagta 40479182
Query: 324 tcttcaactgatattatcaagcttattgagtctgatgcgatgggtgcaaaaggcatctca 383
|||||||| ||||| | |||||||||||| || ||||||||||| ||||||| | |||||
Sbjct: 40479183 tcttcaacagatataaccaagcttattgaatcagatgcgatgggcgcaaaagacttctca 40479242
Query: 384 gatgagt 390
|||||||
Sbjct: 40479243 gatgagt 40479249
>ref|XM_463649.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 3072
Score = 371 bits (187), Expect = e-100
Identities = 322/367 (87%)
Strand = Plus / Minus
Query: 24 gtaaccttggcacggaccggcctatgatctaccaccaatgcattgatccctttaaattct 83
|||||||| |||||||| ||||||||||| || |||||||||||||||||||||||||||
Sbjct: 2237 gtaacctttgcacggactggcctatgatcaacaaccaatgcattgatccctttaaattct 2178
Query: 84 gacgatttattctcatttctgctggaatgggccctcgtaagaaccgcagtgaaggtgaaa 143
|| ||||| | ||||||| || | || |||||| |||| ||||| ||||||||||||
Sbjct: 2177 gatgatttgatgtcatttcctttgcagtgtgccctcataagcaccgcggtgaaggtgaaa 2118
Query: 144 gtagaaccaacttggggtttacttgcaaatccaatctctcccctcatgagtccaaccaag 203
||||||||||| ||||| ||||||||||| || || |||||| ||||||| |||||||||
Sbjct: 2117 gtagaaccaacatggggcttacttgcaaaaccgatttctcccttcatgagaccaaccaag 2058
Query: 204 catttgctgatgcttaatccaatgccagtgcccccatggatgcgagcaatggatggacct 263
|| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 2057 cacttgctgatgcttaatccaatgccagtgcccccatggatgcgggcaatggatggacct 1998
Query: 264 acttgcatgaaaggggtgaagacacgggactgagcatcgaacgggattccaacacccgta 323
|| ||||||||||||||||| |||||||| || || || || ||||| || || || |||
Sbjct: 1997 acctgcatgaaaggggtgaacacacgggattgggcttcaaatgggatgccgacgccagta 1938
Query: 324 tcttcaactgatattatcaagcttattgagtctgatgcgatgggtgcaaaaggcatctca 383
|||||||| ||||| | |||||||||||| || ||||||||||| ||||||| | |||||
Sbjct: 1937 tcttcaacagatataaccaagcttattgaatcagatgcgatgggcgcaaaagacttctca 1878
Query: 384 gatgagt 390
|||||||
Sbjct: 1877 gatgagt 1871
>ref|NT_079923.2| Oryza sativa (japonica cultivar-group)
Length = 2970704
Score = 371 bits (187), Expect = e-100
Identities = 322/367 (87%)
Strand = Plus / Plus
Query: 24 gtaaccttggcacggaccggcctatgatctaccaccaatgcattgatccctttaaattct 83
|||||||| |||||||| ||||||||||| || |||||||||||||||||||||||||||
Sbjct: 107177 gtaacctttgcacggactggcctatgatcaacaaccaatgcattgatccctttaaattct 107236
Query: 84 gacgatttattctcatttctgctggaatgggccctcgtaagaaccgcagtgaaggtgaaa 143
|| ||||| | ||||||| || | || |||||| |||| ||||| ||||||||||||
Sbjct: 107237 gatgatttgatgtcatttcctttgcagtgtgccctcataagcaccgcggtgaaggtgaaa 107296
Query: 144 gtagaaccaacttggggtttacttgcaaatccaatctctcccctcatgagtccaaccaag 203
||||||||||| ||||| ||||||||||| || || |||||| ||||||| |||||||||
Sbjct: 107297 gtagaaccaacatggggcttacttgcaaaaccgatttctcccttcatgagaccaaccaag 107356
Query: 204 catttgctgatgcttaatccaatgccagtgcccccatggatgcgagcaatggatggacct 263
|| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 107357 cacttgctgatgcttaatccaatgccagtgcccccatggatgcgggcaatggatggacct 107416
Query: 264 acttgcatgaaaggggtgaagacacgggactgagcatcgaacgggattccaacacccgta 323
|| ||||||||||||||||| |||||||| || || || || ||||| || || || |||
Sbjct: 107417 acctgcatgaaaggggtgaacacacgggattgggcttcaaatgggatgccgacgccagta 107476
Query: 324 tcttcaactgatattatcaagcttattgagtctgatgcgatgggtgcaaaaggcatctca 383
|||||||| ||||| | |||||||||||| || ||||||||||| ||||||| | |||||
Sbjct: 107477 tcttcaacagatataaccaagcttattgaatcagatgcgatgggcgcaaaagacttctca 107536
Query: 384 gatgagt 390
|||||||
Sbjct: 107537 gatgagt 107543
>dbj|AP004672.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
clone:P0592G05
Length = 146220
Score = 371 bits (187), Expect = e-100
Identities = 322/367 (87%)
Strand = Plus / Plus
Query: 24 gtaaccttggcacggaccggcctatgatctaccaccaatgcattgatccctttaaattct 83
|||||||| |||||||| ||||||||||| || |||||||||||||||||||||||||||
Sbjct: 49454 gtaacctttgcacggactggcctatgatcaacaaccaatgcattgatccctttaaattct 49513
Query: 84 gacgatttattctcatttctgctggaatgggccctcgtaagaaccgcagtgaaggtgaaa 143
|| ||||| | ||||||| || | || |||||| |||| ||||| ||||||||||||
Sbjct: 49514 gatgatttgatgtcatttcctttgcagtgtgccctcataagcaccgcggtgaaggtgaaa 49573
Query: 144 gtagaaccaacttggggtttacttgcaaatccaatctctcccctcatgagtccaaccaag 203
||||||||||| ||||| ||||||||||| || || |||||| ||||||| |||||||||
Sbjct: 49574 gtagaaccaacatggggcttacttgcaaaaccgatttctcccttcatgagaccaaccaag 49633
Query: 204 catttgctgatgcttaatccaatgccagtgcccccatggatgcgagcaatggatggacct 263
|| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 49634 cacttgctgatgcttaatccaatgccagtgcccccatggatgcgggcaatggatggacct 49693
Query: 264 acttgcatgaaaggggtgaagacacgggactgagcatcgaacgggattccaacacccgta 323
|| ||||||||||||||||| |||||||| || || || || ||||| || || || |||
Sbjct: 49694 acctgcatgaaaggggtgaacacacgggattgggcttcaaatgggatgccgacgccagta 49753
Query: 324 tcttcaactgatattatcaagcttattgagtctgatgcgatgggtgcaaaaggcatctca 383
|||||||| ||||| | |||||||||||| || ||||||||||| ||||||| | |||||
Sbjct: 49754 tcttcaacagatataaccaagcttattgaatcagatgcgatgggcgcaaaagacttctca 49813
Query: 384 gatgagt 390
|||||||
Sbjct: 49814 gatgagt 49820
>dbj|AP006167.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
clone:B1455F06
Length = 140848
Score = 371 bits (187), Expect = e-100
Identities = 322/367 (87%)
Strand = Plus / Plus
Query: 24 gtaaccttggcacggaccggcctatgatctaccaccaatgcattgatccctttaaattct 83
|||||||| |||||||| ||||||||||| || |||||||||||||||||||||||||||
Sbjct: 107177 gtaacctttgcacggactggcctatgatcaacaaccaatgcattgatccctttaaattct 107236
Query: 84 gacgatttattctcatttctgctggaatgggccctcgtaagaaccgcagtgaaggtgaaa 143
|| ||||| | ||||||| || | || |||||| |||| ||||| ||||||||||||
Sbjct: 107237 gatgatttgatgtcatttcctttgcagtgtgccctcataagcaccgcggtgaaggtgaaa 107296
Query: 144 gtagaaccaacttggggtttacttgcaaatccaatctctcccctcatgagtccaaccaag 203
||||||||||| ||||| ||||||||||| || || |||||| ||||||| |||||||||
Sbjct: 107297 gtagaaccaacatggggcttacttgcaaaaccgatttctcccttcatgagaccaaccaag 107356
Query: 204 catttgctgatgcttaatccaatgccagtgcccccatggatgcgagcaatggatggacct 263
|| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 107357 cacttgctgatgcttaatccaatgccagtgcccccatggatgcgggcaatggatggacct 107416
Query: 264 acttgcatgaaaggggtgaagacacgggactgagcatcgaacgggattccaacacccgta 323
|| ||||||||||||||||| |||||||| || || || || ||||| || || || |||
Sbjct: 107417 acctgcatgaaaggggtgaacacacgggattgggcttcaaatgggatgccgacgccagta 107476
Query: 324 tcttcaactgatattatcaagcttattgagtctgatgcgatgggtgcaaaaggcatctca 383
|||||||| ||||| | |||||||||||| || ||||||||||| ||||||| | |||||
Sbjct: 107477 tcttcaacagatataaccaagcttattgaatcagatgcgatgggcgcaaaagacttctca 107536
Query: 384 gatgagt 390
|||||||
Sbjct: 107537 gatgagt 107543
>gb|CH401168.1| Oryza sativa (japonica cultivar-group) chromosome 1 scaffold000005 genomic
scaffold, whole genome shotgun sequence
Length = 17394610
Score = 371 bits (187), Expect = e-100
Identities = 322/367 (87%)
Strand = Plus / Plus
Query: 24 gtaaccttggcacggaccggcctatgatctaccaccaatgcattgatccctttaaattct 83
|||||||| |||||||| ||||||||||| || |||||||||||||||||||||||||||
Sbjct: 14681377 gtaacctttgcacggactggcctatgatcaacaaccaatgcattgatccctttaaattct 14681436
Query: 84 gacgatttattctcatttctgctggaatgggccctcgtaagaaccgcagtgaaggtgaaa 143
|| ||||| | ||||||| || | || |||||| |||| ||||| ||||||||||||
Sbjct: 14681437 gatgatttgatgtcatttcctttgcagtgtgccctcataagcaccgcggtgaaggtgaaa 14681496
Query: 144 gtagaaccaacttggggtttacttgcaaatccaatctctcccctcatgagtccaaccaag 203
||||||||||| ||||| ||||||||||| || || |||||| ||||||| |||||||||
Sbjct: 14681497 gtagaaccaacatggggcttacttgcaaaaccgatttctcccttcatgagaccaaccaag 14681556
Query: 204 catttgctgatgcttaatccaatgccagtgcccccatggatgcgagcaatggatggacct 263
|| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 14681557 cacttgctgatgcttaatccaatgccagtgcccccatggatgcgggcaatggatggacct 14681616
Query: 264 acttgcatgaaaggggtgaagacacgggactgagcatcgaacgggattccaacacccgta 323
|| ||||||||||||||||| |||||||| || || || || ||||| || || || |||
Sbjct: 14681617 acctgcatgaaaggggtgaacacacgggattgggcttcaaatgggatgccgacgccagta 14681676
Query: 324 tcttcaactgatattatcaagcttattgagtctgatgcgatgggtgcaaaaggcatctca 383
|||||||| ||||| | |||||||||||| || ||||||||||| ||||||| | |||||
Sbjct: 14681677 tcttcaacagatataaccaagcttattgaatcagatgcgatgggcgcaaaagacttctca 14681736
Query: 384 gatgagt 390
|||||||
Sbjct: 14681737 gatgagt 14681743
>gb|CM000138.1| Oryza sativa (japonica cultivar-group) chromosome 1, whole genome shotgun
sequence
Length = 42596331
Score = 371 bits (187), Expect = e-100
Identities = 322/367 (87%)
Strand = Plus / Plus
Query: 24 gtaaccttggcacggaccggcctatgatctaccaccaatgcattgatccctttaaattct 83
|||||||| |||||||| ||||||||||| || |||||||||||||||||||||||||||
Sbjct: 39883098 gtaacctttgcacggactggcctatgatcaacaaccaatgcattgatccctttaaattct 39883157
Query: 84 gacgatttattctcatttctgctggaatgggccctcgtaagaaccgcagtgaaggtgaaa 143
|| ||||| | ||||||| || | || |||||| |||| ||||| ||||||||||||
Sbjct: 39883158 gatgatttgatgtcatttcctttgcagtgtgccctcataagcaccgcggtgaaggtgaaa 39883217
Query: 144 gtagaaccaacttggggtttacttgcaaatccaatctctcccctcatgagtccaaccaag 203
||||||||||| ||||| ||||||||||| || || |||||| ||||||| |||||||||
Sbjct: 39883218 gtagaaccaacatggggcttacttgcaaaaccgatttctcccttcatgagaccaaccaag 39883277
Query: 204 catttgctgatgcttaatccaatgccagtgcccccatggatgcgagcaatggatggacct 263
|| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 39883278 cacttgctgatgcttaatccaatgccagtgcccccatggatgcgggcaatggatggacct 39883337
Query: 264 acttgcatgaaaggggtgaagacacgggactgagcatcgaacgggattccaacacccgta 323
|| ||||||||||||||||| |||||||| || || || || ||||| || || || |||
Sbjct: 39883338 acctgcatgaaaggggtgaacacacgggattgggcttcaaatgggatgccgacgccagta 39883397
Query: 324 tcttcaactgatattatcaagcttattgagtctgatgcgatgggtgcaaaaggcatctca 383
|||||||| ||||| | |||||||||||| || ||||||||||| ||||||| | |||||
Sbjct: 39883398 tcttcaacagatataaccaagcttattgaatcagatgcgatgggcgcaaaagacttctca 39883457
Query: 384 gatgagt 390
|||||||
Sbjct: 39883458 gatgagt 39883464
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43261740
Score = 371 bits (187), Expect = e-100
Identities = 322/367 (87%)
Strand = Plus / Plus
Query: 24 gtaaccttggcacggaccggcctatgatctaccaccaatgcattgatccctttaaattct 83
|||||||| |||||||| ||||||||||| || |||||||||||||||||||||||||||
Sbjct: 40398213 gtaacctttgcacggactggcctatgatcaacaaccaatgcattgatccctttaaattct 40398272
Query: 84 gacgatttattctcatttctgctggaatgggccctcgtaagaaccgcagtgaaggtgaaa 143
|| ||||| | ||||||| || | || |||||| |||| ||||| ||||||||||||
Sbjct: 40398273 gatgatttgatgtcatttcctttgcagtgtgccctcataagcaccgcggtgaaggtgaaa 40398332
Query: 144 gtagaaccaacttggggtttacttgcaaatccaatctctcccctcatgagtccaaccaag 203
||||||||||| ||||| ||||||||||| || || |||||| ||||||| |||||||||
Sbjct: 40398333 gtagaaccaacatggggcttacttgcaaaaccgatttctcccttcatgagaccaaccaag 40398392
Query: 204 catttgctgatgcttaatccaatgccagtgcccccatggatgcgagcaatggatggacct 263
|| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 40398393 cacttgctgatgcttaatccaatgccagtgcccccatggatgcgggcaatggatggacct 40398452
Query: 264 acttgcatgaaaggggtgaagacacgggactgagcatcgaacgggattccaacacccgta 323
|| ||||||||||||||||| |||||||| || || || || ||||| || || || |||
Sbjct: 40398453 acctgcatgaaaggggtgaacacacgggattgggcttcaaatgggatgccgacgccagta 40398512
Query: 324 tcttcaactgatattatcaagcttattgagtctgatgcgatgggtgcaaaaggcatctca 383
|||||||| ||||| | |||||||||||| || ||||||||||| ||||||| | |||||
Sbjct: 40398513 tcttcaacagatataaccaagcttattgaatcagatgcgatgggcgcaaaagacttctca 40398572
Query: 384 gatgagt 390
|||||||
Sbjct: 40398573 gatgagt 40398579
>gb|D22220.1|D22220 RICC10521A Rice callus Oryza sativa (japonica cultivar-group) cDNA
clone C10521_1A, mRNA sequence
Length = 356
Score = 299 bits (151), Expect = 9e-079
Identities = 232/259 (89%)
Strand = Plus / Minus
Query: 24 gtaaccttggcacggaccggcctatgatctaccaccaatgcattgatccctttaaattct 83
|||||||| |||||||| ||||||||||| || |||||||||||||||||||||||||||
Sbjct: 259 gtaacctttgcacggactggcctatgatcaacaaccaatgcattgatccctttaaattct 200
Query: 84 gacgatttattctcatttctgctggaatgggccctcgtaagaaccgcagtgaaggtgaaa 143
|| ||||| | ||||||| || | || |||||| |||| ||||| ||||||||||||
Sbjct: 199 gatgatttgatgtcatttcctttgcagtgtgccctcataagcaccgcggtgaaggtgaaa 140
Query: 144 gtagaaccaacttggggtttacttgcaaatccaatctctcccctcatgagtccaaccaag 203
||||||||||| ||||| ||||||||||| || || |||||| ||||||| |||||||||
Sbjct: 139 gtagaaccaacatggggcttacttgcaaaaccgatttctcccttcatgagaccaaccaag 80
Query: 204 catttgctgatgcttaatccaatgccagtgcccccatggatgcgagcaatggatggacct 263
|| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 79 cacttgctgatgcttaatccaatgccagtgcccccatggatgcgggcaatggatggacct 20
Query: 264 acttgcatgaaaggggtga 282
|| ||||||||||||||||
Sbjct: 19 acctgcatgaaaggggtga 1
>gb|CF304999.1|CF304999 ABF1--06-I06.g1 ABF3-overexpressing transgenic rice lambda phage
cDNA library (ABF1) Oryza sativa (japonica
cultivar-group) cDNA clone ABF1--06-I06, mRNA sequence
Length = 611
Score = 276 bits (139), Expect = 1e-071
Identities = 226/255 (88%)
Strand = Plus / Minus
Query: 136 aggtgaaagtagaaccaacttggggtttacttgcaaatccaatctctcccctcatgagtc 195
||||||||||||||||||| ||||| ||||||||||| || || |||||| ||||||| |
Sbjct: 611 aggtgaaagtagaaccaacatggggcttacttgcaaaaccgatttctcccttcatgagac 552
Query: 196 caaccaagcatttgctgatgcttaatccaatgccagtgcccccatggatgcgagcaatgg 255
|||||||||| ||| ||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 551 caaccaagcacttgatgatgcttaatccaatgccagtgcccccatggatgcgggcaatgg 492
Query: 256 atggacctacttgcatgaaaggggtgaagacacgggactgagcatcgaacgggattccaa 315
|||||||||| ||||||||||||||||| |||||||| || || || || ||||| || |
Sbjct: 491 atggacctacctgcatgaaaggggtgaacacacgggattgggcttcaaatgggatgccga 432
Query: 316 cacccgtatcttcaactgatattatcaagcttattgagtctgatgcgatgggtgcaaaag 375
| || ||||||||||| ||||| | |||||||||||| || ||||||||||| |||||||
Sbjct: 431 cgccagtatcttcaacagatataaccaagcttattgaatcagatgcgatgggcgcaaaag 372
Query: 376 gcatctcagatgagt 390
| ||||||||||||
Sbjct: 371 acttctcagatgagt 357
>gb|CB649579.1|CB649579 OSJNEb13J09.f OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb13J09 5', mRNA sequence
Length = 802
Score = 274 bits (138), Expect = 5e-071
Identities = 222/250 (88%)
Strand = Plus / Minus
Query: 141 aaagtagaaccaacttggggtttacttgcaaatccaatctctcccctcatgagtccaacc 200
|||||||||||||| ||||| ||||||||||| || || |||||| ||||||| ||||||
Sbjct: 802 aaagtagaaccaacatggggcttacttgcaaaaccgatttctcccttcatgagaccaacc 743
Query: 201 aagcatttgctgatgcttaatccaatgccagtgcccccatggatgcgagcaatggatgga 260
||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 742 aagcacttgctgatgcttaatccaatgccagtgcccccatggatgcgggcaatggatgga 683
Query: 261 cctacttgcatgaaaggggtgaagacacgggactgagcatcgaacgggattccaacaccc 320
||||| ||||||||||||||||| |||||||| || || || || ||||| || || ||
Sbjct: 682 cctacctgcatgaaaggggtgaacacacgggattgggcttcaaatgggatgccgacgcca 623
Query: 321 gtatcttcaactgatattatcaagcttattgagtctgatgcgatgggtgcaaaaggcatc 380
||||||||||| ||||| | |||||||||||| || ||||||||||| ||||||| | ||
Sbjct: 622 gtatcttcaacagatataaccaagcttattgaatcagatgcgatgggcgcaaaagacttc 563
Query: 381 tcagatgagt 390
||||||||||
Sbjct: 562 tcagatgagt 553
>gb|CB678613.1|CB678613 OSJNEe16O18.f OSJNEe Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEe16O18 5', mRNA sequence
Length = 770
Score = 254 bits (128), Expect = 5e-065
Identities = 213/240 (88%), Gaps = 1/240 (0%)
Strand = Plus / Minus
Query: 24 gtaaccttggcacggaccggcctatgatctaccaccaatgcattgatccctttaaattct 83
|||||||| |||||||| ||||||||||| || |||||||||||||||||||||||||||
Sbjct: 240 gtaacctttgcacggactggcctatgatcaacaaccaatgcattgatccctttaaattct 181
Query: 84 gacgatttattctcatttctgctggaatgggccctcgtaagaaccgcagtgaaggtgaaa 143
|| ||||| | ||||||| || | || |||||| |||| ||||| ||||||||||||
Sbjct: 180 gatgatttgatgtcatttcctttgcagtgtgccctcataagcaccgcggtgaaggtgaaa 121
Query: 144 gtagaaccaacttggggtttacttgcaaatcca-atctctcccctcatgagtccaaccaa 202
||||||||||| ||||| ||||||||||| || || |||||| ||||||| ||||||||
Sbjct: 120 gtagaaccaacatggggcttacttgcaaaacctgatttctcccttcatgagaccaaccaa 61
Query: 203 gcatttgctgatgcttaatccaatgccagtgcccccatggatgcgagcaatggatggacc 262
||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 60 gcacttgctgatgcttaatccaatgccagtgcccccatggatgcgggcaatggatggacc 1
>gb|CF303918.1|CF303918 ABF1--03-J08.g1 ABF3-overexpressing transgenic rice lambda phage
cDNA library (ABF1) Oryza sativa (japonica
cultivar-group) cDNA clone ABF1--03-J08, mRNA sequence
Length = 582
Score = 75.8 bits (38), Expect = 2e-011
Identities = 62/70 (88%)
Strand = Plus / Minus
Query: 321 gtatcttcaactgatattatcaagcttattgagtctgatgcgatgggtgcaaaaggcatc 380
||||||||||| ||||| | |||||||||||| || ||||||||||| ||||||| | ||
Sbjct: 559 gtatcttcaacagatataaccaagcttattgaatcagatgcgatgggcgcaaaagacttc 500
Query: 381 tcagatgagt 390
||||||||||
Sbjct: 499 tcagatgagt 490
>gb|CV152516.1|CV152516 LS71-S.SEQ Cold stressed rice cDNA library Oryza sativa (japonica
cultivar-group) cDNA, mRNA sequence
Length = 637
Score = 50.1 bits (25), Expect = 0.001
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 204 catttgctgatgcttaatccaatgccagt 232
||||||||||||||||| |||||||||||
Sbjct: 259 catttgctgatgcttaaaccaatgccagt 231
>gb|AC091532.13| Oryza sativa chromosome 3 BAC OSJNBa0078A17 genomic sequence, complete
sequence
Length = 147344
Score = 50.1 bits (25), Expect = 0.001
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 204 catttgctgatgcttaatccaatgccagt 232
|||||||||||||| ||||||||||||||
Sbjct: 67916 catttgctgatgctcaatccaatgccagt 67888
>dbj|AP005112.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
clone:P0684F11
Length = 147731
Score = 50.1 bits (25), Expect = 0.001
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 204 catttgctgatgcttaatccaatgccagt 232
||||||||||||||||| |||||||||||
Sbjct: 29563 catttgctgatgcttaaaccaatgccagt 29535
>gb|AACV01005369.1| Oryza sativa (japonica cultivar-group) chromosome 2 Ctg005369,
whole genome shotgun sequence
Length = 6338
Score = 50.1 bits (25), Expect = 0.001
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 204 catttgctgatgcttaatccaatgccagt 232
||||||||||||||||| |||||||||||
Sbjct: 903 catttgctgatgcttaaaccaatgccagt 875
>gb|AACV01007799.1| Oryza sativa (japonica cultivar-group) chromosome 3 Ctg007799, whole
genome shotgun sequence
Length = 57179
Score = 50.1 bits (25), Expect = 0.001
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 204 catttgctgatgcttaatccaatgccagt 232
|||||||||||||| ||||||||||||||
Sbjct: 53017 catttgctgatgctcaatccaatgccagt 52989
>ref|XM_467688.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 2955
Score = 50.1 bits (25), Expect = 0.001
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 204 catttgctgatgcttaatccaatgccagt 232
||||||||||||||||| |||||||||||
Sbjct: 1907 catttgctgatgcttaaaccaatgccagt 1879
>ref|XM_469566.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 3042
Score = 50.1 bits (25), Expect = 0.001
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 204 catttgctgatgcttaatccaatgccagt 232
|||||||||||||| ||||||||||||||
Sbjct: 1961 catttgctgatgctcaatccaatgccagt 1933
>ref|NT_107181.1| Oryza sativa (japonica cultivar-group)
Length = 9248309
Score = 50.1 bits (25), Expect = 0.001
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 204 catttgctgatgcttaatccaatgccagt 232
||||||||||||||||| |||||||||||
Sbjct: 6010985 catttgctgatgcttaaaccaatgccagt 6010957
>ref|NT_079916.2| Oryza sativa (japonica cultivar-group)
Length = 3914802
Score = 50.1 bits (25), Expect = 0.001
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 204 catttgctgatgcttaatccaatgccagt 232
|||||||||||||| ||||||||||||||
Sbjct: 2066002 catttgctgatgctcaatccaatgccagt 2065974
>gb|CH401176.1| Oryza sativa (japonica cultivar-group) chromosome 3 scaffold000013 genomic
scaffold, whole genome shotgun sequence
Length = 9810738
Score = 50.1 bits (25), Expect = 0.001
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 204 catttgctgatgcttaatccaatgccagt 232
|||||||||||||| ||||||||||||||
Sbjct: 2550798 catttgctgatgctcaatccaatgccagt 2550770
>gb|CH401170.1| Oryza sativa (japonica cultivar-group) chromosome 2 scaffold000007 genomic
scaffold, whole genome shotgun sequence
Length = 22563205
Score = 50.1 bits (25), Expect = 0.001
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 204 catttgctgatgcttaatccaatgccagt 232
||||||||||||||||| |||||||||||
Sbjct: 17340064 catttgctgatgcttaaaccaatgccagt 17340036
>gb|CM000140.1| Oryza sativa (japonica cultivar-group) chromosome 3, whole genome shotgun
sequence
Length = 37803064
Score = 50.1 bits (25), Expect = 0.001
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 204 catttgctgatgcttaatccaatgccagt 232
|||||||||||||| ||||||||||||||
Sbjct: 29816961 catttgctgatgctcaatccaatgccagt 29816933
>gb|CM000139.1| Oryza sativa (japonica cultivar-group) chromosome 2, whole genome shotgun
sequence
Length = 36016269
Score = 50.1 bits (25), Expect = 0.001
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 204 catttgctgatgcttaatccaatgccagt 232
||||||||||||||||| |||||||||||
Sbjct: 30793128 catttgctgatgcttaaaccaatgccagt 30793100
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
sequence
Length = 35954743
Score = 50.1 bits (25), Expect = 0.001
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 204 catttgctgatgcttaatccaatgccagt 232
||||||||||||||||| |||||||||||
Sbjct: 30845986 catttgctgatgcttaaaccaatgccagt 30845958
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
sequence
Length = 36192742
Score = 50.1 bits (25), Expect = 0.001
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 204 catttgctgatgcttaatccaatgccagt 232
|||||||||||||| ||||||||||||||
Sbjct: 28852259 catttgctgatgctcaatccaatgccagt 28852231
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
Length = 36102668
Score = 50.1 bits (25), Expect = 0.001
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 204 catttgctgatgcttaatccaatgccagt 232
|||||||||||||| ||||||||||||||
Sbjct: 28760935 catttgctgatgctcaatccaatgccagt 28760907
>dbj|AB155292.1| Oryza sativa (japonica cultivar-group) DNA, clone:T25630T, 3'
flanking sequence of Tos17 insertion in rice strain
NF8002, genomic survey sequence
Length = 485
Score = 44.1 bits (22), Expect = 0.087
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggtacct 22
||||||||||||||||||||||
Sbjct: 226 gcggccgcccgggcaggtacct 205
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 554,657
Number of Sequences: 438736
Number of extensions: 554657
Number of successful extensions: 10046
Number of sequences better than 0.5: 34
Number of HSP's better than 0.5 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 9724
Number of HSP's gapped (non-prelim): 307
length of query: 608
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 587
effective length of database: 2,791,206,460
effective search space: 1638438192020
effective search space used: 1638438192020
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)