BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QCN28g01.yg.2.1
(513 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AY324384.1| Oryza sativa (japonica cultivar-group) callo... 373 e-101
ref|XM_468556.1| Oryza sativa (japonica cultivar-group), mRNA 373 e-101
gb|CB675632.1|CB675632 OSJNEe11H21.r OSJNEe Oryza sativa (j... 347 4e-093
gb|CB639228.1|CB639228 OSJNEa08N01.f OSJNEa Oryza sativa (j... 242 2e-061
dbj|AP004082.3| Oryza sativa (japonica cultivar-group) geno... 157 7e-036
dbj|AP005290.2| Oryza sativa (japonica cultivar-group) geno... 157 7e-036
gb|AACV01005686.1| Oryza sativa (japonica cultivar-group) c... 157 7e-036
ref|NT_107182.1| Oryza sativa (japonica cultivar-group) 157 7e-036
gb|CH401170.1| Oryza sativa (japonica cultivar-group) chrom... 157 7e-036
gb|CM000139.1| Oryza sativa (japonica cultivar-group) chrom... 157 7e-036
dbj|AP008208.1| Oryza sativa (japonica cultivar-group) geno... 157 7e-036
ref|NT_107235.1| Oryza sativa (japonica cultivar-group) 133 1e-028
dbj|AP004685.3| Oryza sativa (japonica cultivar-group) geno... 133 1e-028
dbj|AP005750.3| Oryza sativa (japonica cultivar-group) geno... 133 1e-028
gb|AACV01014976.1| Oryza sativa (japonica cultivar-group) c... 133 1e-028
gb|CH401216.1| Oryza sativa (japonica cultivar-group) chrom... 133 1e-028
gb|CM000143.1| Oryza sativa (japonica cultivar-group) chrom... 133 1e-028
dbj|AP008212.1| Oryza sativa (japonica cultivar-group) geno... 133 1e-028
gb|AZ126558.1|AZ126558 OSJNBb0078B11r CUGI Rice BAC Library... 72 3e-010
dbj|AG210767.1| Oryza sativa (japonica cultivar-group) DNA,... 50 0.001
dbj|AG023962.1| Oryza sativa (japonica cultivar-group) DNA,... 50 0.001
gb|AC104427.2| Oryza sativa (japonica cultivar-group) chrom... 50 0.001
gb|AC144426.1| Oryza sativa (japonica cultivar-group) chrom... 50 0.001
gb|AACV01005795.1| Oryza sativa (japonica cultivar-group) c... 50 0.001
ref|NM_187591.1| Oryza sativa (japonica cultivar-group), p... 50 0.001
ref|NT_107183.1| Oryza sativa (japonica cultivar-group) 50 0.001
gb|CH401173.1| Oryza sativa (japonica cultivar-group) chrom... 50 0.001
gb|CM000140.1| Oryza sativa (japonica cultivar-group) chrom... 50 0.001
dbj|AP008209.1| Oryza sativa (japonica cultivar-group) geno... 50 0.001
gb|DP000009.1| Oryza sativa (japonica cultivar-group) chrom... 50 0.001
ref|NM_193204.1| Oryza sativa (japonica cultivar-group), p... 46 0.018
gb|CF328591.1|CF328591 NACL--03-J03.b1 Rice callus plasmid ... 44 0.073
gb|CF329508.1|CF329508 NACL--04-N18.b1 Rice callus plasmid ... 44 0.073
dbj|AK064082.1| Oryza sativa (japonica cultivar-group) cDNA... 44 0.073
dbj|AK101426.1| Oryza sativa (japonica cultivar-group) cDNA... 44 0.073
gb|AACV01002509.1| Oryza sativa (japonica cultivar-group) c... 44 0.073
dbj|AP003221.2| Oryza sativa (japonica cultivar-group) geno... 44 0.073
dbj|AP003293.5| Oryza sativa (japonica cultivar-group) geno... 44 0.073
dbj|BA000010.8| Oryza sativa (japonica cultivar-group) geno... 44 0.073
ref|NM_190932.1| Oryza sativa (japonica cultivar-group), p... 44 0.073
ref|NT_079927.2| Oryza sativa (japonica cultivar-group) 44 0.073
gb|CH401168.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.073
gb|CM000138.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.073
dbj|AP008207.1| Oryza sativa (japonica cultivar-group) geno... 44 0.073
gb|AQ574894.1|AQ574894 nbxb0086E18f CUGI Rice BAC Library O... 42 0.29
gb|AACV01001409.1| Oryza sativa (japonica cultivar-group) c... 42 0.29
ref|NT_079926.2| Oryza sativa (japonica cultivar-group) 42 0.29
dbj|AP003447.2| Oryza sativa (japonica cultivar-group) geno... 42 0.29
gb|CH401166.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.29
>gb|AY324384.1| Oryza sativa (japonica cultivar-group) callose synthase-like
protein mRNA, partial cds
Length = 2727
Score = 373 bits (188), Expect = e-101
Identities = 335/384 (87%)
Strand = Plus / Minus
Query: 100 gtacatcatccctcttacagttcttgtcaaagtttgtccccggtatgatgcccaaaggcg 159
||||||||||||||| |||||||| ||||||||||| |||| ||||||||||||||||||
Sbjct: 405 gtacatcatccctctgacagttctcgtcaaagtttggcccctgtatgatgcccaaaggcg 346
Query: 160 aagctgctcttcagaatgctcagtctcgtggagttgatcttcactctcacaatgcaccct 219
||||| ||||| | ||||| ||||| |||||| |||||| | | |||| ||||||
Sbjct: 345 aagctcatcttccaactgctctgtctcacggagttcctcttcagtattgcaatccaccct 286
Query: 220 ttcaagaaaatttttccattcatctgggtagattttttgcaaataaaaaaggatggaaac 279
|| ||| |||| ||||||||||||||| |||||||||||||| |||||||| || |||||
Sbjct: 285 ttgaaggaaatgtttccattcatctggatagattttttgcaagtaaaaaagaatagaaac 226
Query: 280 tccgtcctcattctgttctgctagtgcttgtgaagagaaaagaacatcttctttataata 339
|| || |||||||| ||| ||| |||||| ||||||||||| ||||||||||| || ||
Sbjct: 225 cccatcttcattctggtcttctaatgcttgggaagagaaaaggacatcttctttgtagta 166
Query: 340 aggagtcaagacagagaagggcaacatttgccgcacttttggagcatctggcatcgacat 399
||||||||||||||||||||||||||| ||||| |||||||||||| |||||| |||
Sbjct: 165 aggagtcaagacagagaagggcaacatgtgccggacttttggagcacttggcatgtccat 106
Query: 400 aaaaagagaattagcaaagaaagatatcctccttctagcatccaggtttgtagggacatc 459
|||||||||||||||||||| ||||||| |||||||||||||||||||||||| |||||
Sbjct: 105 gaaaagagaattagcaaagaatgatatccgccttctagcatccaggtttgtaggaacatc 46
Query: 460 catagccgattccttcaccgtgag 483
|||||| ||||||||||| |||||
Sbjct: 45 catagcagattccttcactgtgag 22
>ref|XM_468556.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 5910
Score = 373 bits (188), Expect = e-101
Identities = 335/384 (87%)
Strand = Plus / Minus
Query: 100 gtacatcatccctcttacagttcttgtcaaagtttgtccccggtatgatgcccaaaggcg 159
||||||||||||||| |||||||| ||||||||||| |||| ||||||||||||||||||
Sbjct: 3588 gtacatcatccctctgacagttctcgtcaaagtttggcccctgtatgatgcccaaaggcg 3529
Query: 160 aagctgctcttcagaatgctcagtctcgtggagttgatcttcactctcacaatgcaccct 219
||||| ||||| | ||||| ||||| |||||| |||||| | | |||| ||||||
Sbjct: 3528 aagctcatcttccaactgctctgtctcacggagttcctcttcagtattgcaatccaccct 3469
Query: 220 ttcaagaaaatttttccattcatctgggtagattttttgcaaataaaaaaggatggaaac 279
|| ||| |||| ||||||||||||||| |||||||||||||| |||||||| || |||||
Sbjct: 3468 ttgaaggaaatgtttccattcatctggatagattttttgcaagtaaaaaagaatagaaac 3409
Query: 280 tccgtcctcattctgttctgctagtgcttgtgaagagaaaagaacatcttctttataata 339
|| || |||||||| ||| ||| |||||| ||||||||||| ||||||||||| || ||
Sbjct: 3408 cccatcttcattctggtcttctaatgcttgggaagagaaaaggacatcttctttgtagta 3349
Query: 340 aggagtcaagacagagaagggcaacatttgccgcacttttggagcatctggcatcgacat 399
||||||||||||||||||||||||||| ||||| |||||||||||| |||||| |||
Sbjct: 3348 aggagtcaagacagagaagggcaacatgtgccggacttttggagcacttggcatgtccat 3289
Query: 400 aaaaagagaattagcaaagaaagatatcctccttctagcatccaggtttgtagggacatc 459
|||||||||||||||||||| ||||||| |||||||||||||||||||||||| |||||
Sbjct: 3288 gaaaagagaattagcaaagaatgatatccgccttctagcatccaggtttgtaggaacatc 3229
Query: 460 catagccgattccttcaccgtgag 483
|||||| ||||||||||| |||||
Sbjct: 3228 catagcagattccttcactgtgag 3205
>gb|CB675632.1|CB675632 OSJNEe11H21.r OSJNEe Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEe11H21 3', mRNA sequence
Length = 914
Score = 347 bits (175), Expect = 4e-093
Identities = 319/367 (86%)
Strand = Plus / Plus
Query: 117 cagttcttgtcaaagtttgtccccggtatgatgcccaaaggcgaagctgctcttcagaat 176
||||||| ||||||||||| |||| ||||||||||||||||||||||| ||||| | |
Sbjct: 522 cagttctcgtcaaagtttggcccctgtatgatgcccaaaggcgaagctcatcttccaact 581
Query: 177 gctcagtctcgtggagttgatcttcactctcacaatgcaccctttcaagaaaatttttcc 236
|||| ||||| |||||| |||||| | | |||| |||||||| ||| |||| |||||
Sbjct: 582 gctctgtctcacggagttcctcttcagtattgcaatccaccctttgaaggaaatgtttcc 641
Query: 237 attcatctgggtagattttttgcaaataaaaaaggatggaaactccgtcctcattctgtt 296
|||||||||| |||||||||||||| |||||||| || ||||| || || |||||||| |
Sbjct: 642 attcatctggatagattttttgcaagtaaaaaagaatagaaaccccatcttcattctggt 701
Query: 297 ctgctagtgcttgtgaagagaaaagaacatcttctttataataaggagtcaagacagaga 356
|| ||| |||||| ||||||||||| ||||||||||| || |||||||||||||||||||
Sbjct: 702 cttctaatgcttgggaagagaaaaggacatcttctttgtagtaaggagtcaagacagaga 761
Query: 357 agggcaacatttgccgcacttttggagcatctggcatcgacataaaaagagaattagcaa 416
|||||||||| ||||| |||||||||||| |||||| ||| ||||||||||||||||
Sbjct: 762 agggcaacatgtgccggacttttggagcacttggcatgtccatgaaaagagaattagcaa 821
Query: 417 agaaagatatcctccttctagcatccaggtttgtagggacatccatagccgattccttca 476
|||| ||||||| |||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct: 822 agaatgatatccgccttctagcatccaggtttgtaggaacatccatagcagattccttca 881
Query: 477 ccgtgag 483
| |||||
Sbjct: 882 ctgtgag 888
>gb|CB639228.1|CB639228 OSJNEa08N01.f OSJNEa Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEa08N01 5', mRNA sequence
Length = 603
Score = 242 bits (122), Expect = 2e-061
Identities = 233/270 (86%)
Strand = Plus / Minus
Query: 214 caccctttcaagaaaatttttccattcatctgggtagattttttgcaaataaaaaaggat 273
|||||| ||||| |||||||||||||||||||||||||||||||| || || ||||| ||
Sbjct: 429 caccctatcaaggaaatttttccattcatctgggtagattttttgtaagtagaaaagtat 370
Query: 274 ggaaactccgtcctcattctgttctgctagtgcttgtgaagagaaaagaacatcttcttt 333
|||||| || |||||||| | ||| | || || || ||||||||||||||||| ||
Sbjct: 369 ggaaaccccatcctcatttggctcttccagattatgagaggagaaaagaacatcttcctt 310
Query: 334 ataataaggagtcaagacagagaagggcaacatttgccgcacttttggagcatctggcat 393
|||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||
Sbjct: 309 gtaataaggagtcaagacagagaagggcaacatatgccgcacttttggagcattaggcat 250
Query: 394 cgacataaaaagagaattagcaaagaaagatatcctccttctagcatccaggtttgtagg 453
| ||||||||||||||| |||||||| ||||||| || |||||||| ||||| |||||
Sbjct: 249 ctccataaaaagagaatttgcaaagaacgatatccgtctcctagcatcaaggttcgtagg 190
Query: 454 gacatccatagccgattccttcaccgtgag 483
|||||||||||| || || ||||| |||||
Sbjct: 189 gacatccatagcagactctttcacagtgag 160
Score = 87.7 bits (44), Expect = 5e-015
Identities = 65/72 (90%)
Strand = Plus / Minus
Query: 100 gtacatcatccctcttacagttcttgtcaaagtttgtccccggtatgatgcccaaaggcg 159
||||||||| ||||| |||||||||||||| || ||||||| |||||||||||||||||
Sbjct: 543 gtacatcattcctctcacagttcttgtcaatgtctgtcccctatatgatgcccaaaggcg 484
Query: 160 aagctgctcttc 171
||||| ||||||
Sbjct: 483 aagctcctcttc 472
>dbj|AP004082.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
clone:OJ1149_C12
Length = 120743
Score = 157 bits (79), Expect = 7e-036
Identities = 118/131 (90%)
Strand = Plus / Minus
Query: 353 gagaagggcaacatttgccgcacttttggagcatctggcatcgacataaaaagagaatta 412
|||||||||||||| ||||| |||||||||||| |||||| ||| ||||||||||||
Sbjct: 87708 gagaagggcaacatgtgccggacttttggagcacttggcatgtccatgaaaagagaatta 87649
Query: 413 gcaaagaaagatatcctccttctagcatccaggtttgtagggacatccatagccgattcc 472
|||||||| ||||||| |||||||||||||||||||||||| ||||||||||| ||||||
Sbjct: 87648 gcaaagaatgatatccgccttctagcatccaggtttgtaggaacatccatagcagattcc 87589
Query: 473 ttcaccgtgag 483
||||| |||||
Sbjct: 87588 ttcactgtgag 87578
Score = 107 bits (54), Expect = 6e-021
Identities = 96/110 (87%)
Strand = Plus / Minus
Query: 243 ctgggtagattttttgcaaataaaaaaggatggaaactccgtcctcattctgttctgcta 302
|||| |||||||||||||| |||||||| || ||||| || || |||||||| ||| |||
Sbjct: 88376 ctggatagattttttgcaagtaaaaaagaatagaaaccccatcttcattctggtcttcta 88317
Query: 303 gtgcttgtgaagagaaaagaacatcttctttataataaggagtcaagaca 352
|||||| ||||||||||| ||||||||||| || |||||||||||||||
Sbjct: 88316 atgcttgggaagagaaaaggacatcttctttgtagtaaggagtcaagaca 88267
Score = 87.7 bits (44), Expect = 5e-015
Identities = 107/128 (83%)
Strand = Plus / Minus
Query: 117 cagttcttgtcaaagtttgtccccggtatgatgcccaaaggcgaagctgctcttcagaat 176
||||||| ||||||||||| |||| ||||||||||||||||||||||| ||||| | |
Sbjct: 88604 cagttctcgtcaaagtttggcccctgtatgatgcccaaaggcgaagctcatcttccaact 88545
Query: 177 gctcagtctcgtggagttgatcttcactctcacaatgcaccctttcaagaaaatttttcc 236
|||| ||||| |||||| |||||| | | |||| |||||||| ||| |||| |||||
Sbjct: 88544 gctctgtctcacggagttcctcttcagtattgcaatccaccctttgaaggaaatgtttcc 88485
Query: 237 attcatct 244
||||||||
Sbjct: 88484 attcatct 88477
>dbj|AP005290.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
clone:OJ1282_E10
Length = 107284
Score = 157 bits (79), Expect = 7e-036
Identities = 118/131 (90%)
Strand = Plus / Minus
Query: 353 gagaagggcaacatttgccgcacttttggagcatctggcatcgacataaaaagagaatta 412
|||||||||||||| ||||| |||||||||||| |||||| ||| ||||||||||||
Sbjct: 7539 gagaagggcaacatgtgccggacttttggagcacttggcatgtccatgaaaagagaatta 7480
Query: 413 gcaaagaaagatatcctccttctagcatccaggtttgtagggacatccatagccgattcc 472
|||||||| ||||||| |||||||||||||||||||||||| ||||||||||| ||||||
Sbjct: 7479 gcaaagaatgatatccgccttctagcatccaggtttgtaggaacatccatagcagattcc 7420
Query: 473 ttcaccgtgag 483
||||| |||||
Sbjct: 7419 ttcactgtgag 7409
Score = 107 bits (54), Expect = 6e-021
Identities = 96/110 (87%)
Strand = Plus / Minus
Query: 243 ctgggtagattttttgcaaataaaaaaggatggaaactccgtcctcattctgttctgcta 302
|||| |||||||||||||| |||||||| || ||||| || || |||||||| ||| |||
Sbjct: 8207 ctggatagattttttgcaagtaaaaaagaatagaaaccccatcttcattctggtcttcta 8148
Query: 303 gtgcttgtgaagagaaaagaacatcttctttataataaggagtcaagaca 352
|||||| ||||||||||| ||||||||||| || |||||||||||||||
Sbjct: 8147 atgcttgggaagagaaaaggacatcttctttgtagtaaggagtcaagaca 8098
Score = 87.7 bits (44), Expect = 5e-015
Identities = 107/128 (83%)
Strand = Plus / Minus
Query: 117 cagttcttgtcaaagtttgtccccggtatgatgcccaaaggcgaagctgctcttcagaat 176
||||||| ||||||||||| |||| ||||||||||||||||||||||| ||||| | |
Sbjct: 8435 cagttctcgtcaaagtttggcccctgtatgatgcccaaaggcgaagctcatcttccaact 8376
Query: 177 gctcagtctcgtggagttgatcttcactctcacaatgcaccctttcaagaaaatttttcc 236
|||| ||||| |||||| |||||| | | |||| |||||||| ||| |||| |||||
Sbjct: 8375 gctctgtctcacggagttcctcttcagtattgcaatccaccctttgaaggaaatgtttcc 8316
Query: 237 attcatct 244
||||||||
Sbjct: 8315 attcatct 8308
>gb|AACV01005686.1| Oryza sativa (japonica cultivar-group) chromosome 2 Ctg005686, whole
genome shotgun sequence
Length = 38041
Score = 157 bits (79), Expect = 7e-036
Identities = 118/131 (90%)
Strand = Plus / Minus
Query: 353 gagaagggcaacatttgccgcacttttggagcatctggcatcgacataaaaagagaatta 412
|||||||||||||| ||||| |||||||||||| |||||| ||| ||||||||||||
Sbjct: 2063 gagaagggcaacatgtgccggacttttggagcacttggcatgtccatgaaaagagaatta 2004
Query: 413 gcaaagaaagatatcctccttctagcatccaggtttgtagggacatccatagccgattcc 472
|||||||| ||||||| |||||||||||||||||||||||| ||||||||||| ||||||
Sbjct: 2003 gcaaagaatgatatccgccttctagcatccaggtttgtaggaacatccatagcagattcc 1944
Query: 473 ttcaccgtgag 483
||||| |||||
Sbjct: 1943 ttcactgtgag 1933
Score = 107 bits (54), Expect = 6e-021
Identities = 96/110 (87%)
Strand = Plus / Minus
Query: 243 ctgggtagattttttgcaaataaaaaaggatggaaactccgtcctcattctgttctgcta 302
|||| |||||||||||||| |||||||| || ||||| || || |||||||| ||| |||
Sbjct: 2731 ctggatagattttttgcaagtaaaaaagaatagaaaccccatcttcattctggtcttcta 2672
Query: 303 gtgcttgtgaagagaaaagaacatcttctttataataaggagtcaagaca 352
|||||| ||||||||||| ||||||||||| || |||||||||||||||
Sbjct: 2671 atgcttgggaagagaaaaggacatcttctttgtagtaaggagtcaagaca 2622
Score = 87.7 bits (44), Expect = 5e-015
Identities = 107/128 (83%)
Strand = Plus / Minus
Query: 117 cagttcttgtcaaagtttgtccccggtatgatgcccaaaggcgaagctgctcttcagaat 176
||||||| ||||||||||| |||| ||||||||||||||||||||||| ||||| | |
Sbjct: 2959 cagttctcgtcaaagtttggcccctgtatgatgcccaaaggcgaagctcatcttccaact 2900
Query: 177 gctcagtctcgtggagttgatcttcactctcacaatgcaccctttcaagaaaatttttcc 236
|||| ||||| |||||| |||||| | | |||| |||||||| ||| |||| |||||
Sbjct: 2899 gctctgtctcacggagttcctcttcagtattgcaatccaccctttgaaggaaatgtttcc 2840
Query: 237 attcatct 244
||||||||
Sbjct: 2839 attcatct 2832
>ref|NT_107182.1| Oryza sativa (japonica cultivar-group)
Length = 1785023
Score = 157 bits (79), Expect = 7e-036
Identities = 118/131 (90%)
Strand = Plus / Minus
Query: 353 gagaagggcaacatttgccgcacttttggagcatctggcatcgacataaaaagagaatta 412
|||||||||||||| ||||| |||||||||||| |||||| ||| ||||||||||||
Sbjct: 1652266 gagaagggcaacatgtgccggacttttggagcacttggcatgtccatgaaaagagaatta 1652207
Query: 413 gcaaagaaagatatcctccttctagcatccaggtttgtagggacatccatagccgattcc 472
|||||||| ||||||| |||||||||||||||||||||||| ||||||||||| ||||||
Sbjct: 1652206 gcaaagaatgatatccgccttctagcatccaggtttgtaggaacatccatagcagattcc 1652147
Query: 473 ttcaccgtgag 483
||||| |||||
Sbjct: 1652146 ttcactgtgag 1652136
Score = 107 bits (54), Expect = 6e-021
Identities = 96/110 (87%)
Strand = Plus / Minus
Query: 243 ctgggtagattttttgcaaataaaaaaggatggaaactccgtcctcattctgttctgcta 302
|||| |||||||||||||| |||||||| || ||||| || || |||||||| ||| |||
Sbjct: 1652934 ctggatagattttttgcaagtaaaaaagaatagaaaccccatcttcattctggtcttcta 1652875
Query: 303 gtgcttgtgaagagaaaagaacatcttctttataataaggagtcaagaca 352
|||||| ||||||||||| ||||||||||| || |||||||||||||||
Sbjct: 1652874 atgcttgggaagagaaaaggacatcttctttgtagtaaggagtcaagaca 1652825
Score = 87.7 bits (44), Expect = 5e-015
Identities = 107/128 (83%)
Strand = Plus / Minus
Query: 117 cagttcttgtcaaagtttgtccccggtatgatgcccaaaggcgaagctgctcttcagaat 176
||||||| ||||||||||| |||| ||||||||||||||||||||||| ||||| | |
Sbjct: 1653162 cagttctcgtcaaagtttggcccctgtatgatgcccaaaggcgaagctcatcttccaact 1653103
Query: 177 gctcagtctcgtggagttgatcttcactctcacaatgcaccctttcaagaaaatttttcc 236
|||| ||||| |||||| |||||| | | |||| |||||||| ||| |||| |||||
Sbjct: 1653102 gctctgtctcacggagttcctcttcagtattgcaatccaccctttgaaggaaatgtttcc 1653043
Query: 237 attcatct 244
||||||||
Sbjct: 1653042 attcatct 1653035
>gb|CH401170.1| Oryza sativa (japonica cultivar-group) chromosome 2 scaffold000007 genomic
scaffold, whole genome shotgun sequence
Length = 22563205
Score = 157 bits (79), Expect = 7e-036
Identities = 118/131 (90%)
Strand = Plus / Minus
Query: 353 gagaagggcaacatttgccgcacttttggagcatctggcatcgacataaaaagagaatta 412
|||||||||||||| ||||| |||||||||||| |||||| ||| ||||||||||||
Sbjct: 22446172 gagaagggcaacatgtgccggacttttggagcacttggcatgtccatgaaaagagaatta 22446113
Query: 413 gcaaagaaagatatcctccttctagcatccaggtttgtagggacatccatagccgattcc 472
|||||||| ||||||| |||||||||||||||||||||||| ||||||||||| ||||||
Sbjct: 22446112 gcaaagaatgatatccgccttctagcatccaggtttgtaggaacatccatagcagattcc 22446053
Query: 473 ttcaccgtgag 483
||||| |||||
Sbjct: 22446052 ttcactgtgag 22446042
Score = 107 bits (54), Expect = 6e-021
Identities = 96/110 (87%)
Strand = Plus / Minus
Query: 243 ctgggtagattttttgcaaataaaaaaggatggaaactccgtcctcattctgttctgcta 302
|||| |||||||||||||| |||||||| || ||||| || || |||||||| ||| |||
Sbjct: 22446840 ctggatagattttttgcaagtaaaaaagaatagaaaccccatcttcattctggtcttcta 22446781
Query: 303 gtgcttgtgaagagaaaagaacatcttctttataataaggagtcaagaca 352
|||||| ||||||||||| ||||||||||| || |||||||||||||||
Sbjct: 22446780 atgcttgggaagagaaaaggacatcttctttgtagtaaggagtcaagaca 22446731
Score = 87.7 bits (44), Expect = 5e-015
Identities = 107/128 (83%)
Strand = Plus / Minus
Query: 117 cagttcttgtcaaagtttgtccccggtatgatgcccaaaggcgaagctgctcttcagaat 176
||||||| ||||||||||| |||| ||||||||||||||||||||||| ||||| | |
Sbjct: 22447068 cagttctcgtcaaagtttggcccctgtatgatgcccaaaggcgaagctcatcttccaact 22447009
Query: 177 gctcagtctcgtggagttgatcttcactctcacaatgcaccctttcaagaaaatttttcc 236
|||| ||||| |||||| |||||| | | |||| |||||||| ||| |||| |||||
Sbjct: 22447008 gctctgtctcacggagttcctcttcagtattgcaatccaccctttgaaggaaatgtttcc 22446949
Query: 237 attcatct 244
||||||||
Sbjct: 22446948 attcatct 22446941
>gb|CM000139.1| Oryza sativa (japonica cultivar-group) chromosome 2, whole genome shotgun
sequence
Length = 36016269
Score = 157 bits (79), Expect = 7e-036
Identities = 118/131 (90%)
Strand = Plus / Minus
Query: 353 gagaagggcaacatttgccgcacttttggagcatctggcatcgacataaaaagagaatta 412
|||||||||||||| ||||| |||||||||||| |||||| ||| ||||||||||||
Sbjct: 35899236 gagaagggcaacatgtgccggacttttggagcacttggcatgtccatgaaaagagaatta 35899177
Query: 413 gcaaagaaagatatcctccttctagcatccaggtttgtagggacatccatagccgattcc 472
|||||||| ||||||| |||||||||||||||||||||||| ||||||||||| ||||||
Sbjct: 35899176 gcaaagaatgatatccgccttctagcatccaggtttgtaggaacatccatagcagattcc 35899117
Query: 473 ttcaccgtgag 483
||||| |||||
Sbjct: 35899116 ttcactgtgag 35899106
Score = 107 bits (54), Expect = 6e-021
Identities = 96/110 (87%)
Strand = Plus / Minus
Query: 243 ctgggtagattttttgcaaataaaaaaggatggaaactccgtcctcattctgttctgcta 302
|||| |||||||||||||| |||||||| || ||||| || || |||||||| ||| |||
Sbjct: 35899904 ctggatagattttttgcaagtaaaaaagaatagaaaccccatcttcattctggtcttcta 35899845
Query: 303 gtgcttgtgaagagaaaagaacatcttctttataataaggagtcaagaca 352
|||||| ||||||||||| ||||||||||| || |||||||||||||||
Sbjct: 35899844 atgcttgggaagagaaaaggacatcttctttgtagtaaggagtcaagaca 35899795
Score = 87.7 bits (44), Expect = 5e-015
Identities = 107/128 (83%)
Strand = Plus / Minus
Query: 117 cagttcttgtcaaagtttgtccccggtatgatgcccaaaggcgaagctgctcttcagaat 176
||||||| ||||||||||| |||| ||||||||||||||||||||||| ||||| | |
Sbjct: 35900132 cagttctcgtcaaagtttggcccctgtatgatgcccaaaggcgaagctcatcttccaact 35900073
Query: 177 gctcagtctcgtggagttgatcttcactctcacaatgcaccctttcaagaaaatttttcc 236
|||| ||||| |||||| |||||| | | |||| |||||||| ||| |||| |||||
Sbjct: 35900072 gctctgtctcacggagttcctcttcagtattgcaatccaccctttgaaggaaatgtttcc 35900013
Query: 237 attcatct 244
||||||||
Sbjct: 35900012 attcatct 35900005
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
sequence
Length = 35954743
Score = 157 bits (79), Expect = 7e-036
Identities = 118/131 (90%)
Strand = Plus / Minus
Query: 353 gagaagggcaacatttgccgcacttttggagcatctggcatcgacataaaaagagaatta 412
|||||||||||||| ||||| |||||||||||| |||||| ||| ||||||||||||
Sbjct: 35816993 gagaagggcaacatgtgccggacttttggagcacttggcatgtccatgaaaagagaatta 35816934
Query: 413 gcaaagaaagatatcctccttctagcatccaggtttgtagggacatccatagccgattcc 472
|||||||| ||||||| |||||||||||||||||||||||| ||||||||||| ||||||
Sbjct: 35816933 gcaaagaatgatatccgccttctagcatccaggtttgtaggaacatccatagcagattcc 35816874
Query: 473 ttcaccgtgag 483
||||| |||||
Sbjct: 35816873 ttcactgtgag 35816863
Score = 107 bits (54), Expect = 6e-021
Identities = 96/110 (87%)
Strand = Plus / Minus
Query: 243 ctgggtagattttttgcaaataaaaaaggatggaaactccgtcctcattctgttctgcta 302
|||| |||||||||||||| |||||||| || ||||| || || |||||||| ||| |||
Sbjct: 35817661 ctggatagattttttgcaagtaaaaaagaatagaaaccccatcttcattctggtcttcta 35817602
Query: 303 gtgcttgtgaagagaaaagaacatcttctttataataaggagtcaagaca 352
|||||| ||||||||||| ||||||||||| || |||||||||||||||
Sbjct: 35817601 atgcttgggaagagaaaaggacatcttctttgtagtaaggagtcaagaca 35817552
Score = 87.7 bits (44), Expect = 5e-015
Identities = 107/128 (83%)
Strand = Plus / Minus
Query: 117 cagttcttgtcaaagtttgtccccggtatgatgcccaaaggcgaagctgctcttcagaat 176
||||||| ||||||||||| |||| ||||||||||||||||||||||| ||||| | |
Sbjct: 35817889 cagttctcgtcaaagtttggcccctgtatgatgcccaaaggcgaagctcatcttccaact 35817830
Query: 177 gctcagtctcgtggagttgatcttcactctcacaatgcaccctttcaagaaaatttttcc 236
|||| ||||| |||||| |||||| | | |||| |||||||| ||| |||| |||||
Sbjct: 35817829 gctctgtctcacggagttcctcttcagtattgcaatccaccctttgaaggaaatgtttcc 35817770
Query: 237 attcatct 244
||||||||
Sbjct: 35817769 attcatct 35817762
>ref|NT_107235.1| Oryza sativa (japonica cultivar-group)
Length = 369247
Score = 133 bits (67), Expect = 1e-028
Identities = 115/131 (87%)
Strand = Plus / Plus
Query: 353 gagaagggcaacatttgccgcacttttggagcatctggcatcgacataaaaagagaatta 412
|||||||||||||| ||||||||||||||||||| |||||| |||||||||||||||
Sbjct: 161295 gagaagggcaacatatgccgcacttttggagcattaggcatctccataaaaagagaattt 161354
Query: 413 gcaaagaaagatatcctccttctagcatccaggtttgtagggacatccatagccgattcc 472
|||||||| ||||||| || |||||||| ||||| ||||||||||||||||| || ||
Sbjct: 161355 gcaaagaacgatatccgtctcctagcatcaaggttcgtagggacatccatagcagactct 161414
Query: 473 ttcaccgtgag 483
||||| |||||
Sbjct: 161415 ttcacagtgag 161425
Score = 69.9 bits (35), Expect = 1e-009
Identities = 50/55 (90%)
Strand = Plus / Plus
Query: 117 cagttcttgtcaaagtttgtccccggtatgatgcccaaaggcgaagctgctcttc 171
||||||||||||| || ||||||| |||||||||||||||||||||| ||||||
Sbjct: 160683 cagttcttgtcaatgtctgtcccctatatgatgcccaaaggcgaagctcctcttc 160737
Score = 67.9 bits (34), Expect = 5e-009
Identities = 91/110 (82%)
Strand = Plus / Plus
Query: 243 ctgggtagattttttgcaaataaaaaaggatggaaactccgtcctcattctgttctgcta 302
|||||||||||||||| || || ||||| |||||||| || |||||||| | ||| | |
Sbjct: 160927 ctgggtagattttttgtaagtagaaaagtatggaaaccccatcctcatttggctcttcca 160986
Query: 303 gtgcttgtgaagagaaaagaacatcttctttataataaggagtcaagaca 352
| || || ||||||||||||||||| || ||||||||||||||||||
Sbjct: 160987 gattatgagaggagaaaagaacatcttccttgtaataaggagtcaagaca 161036
Score = 46.1 bits (23), Expect = 0.018
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 214 caccctttcaagaaaatttttccattcatct 244
|||||| ||||| ||||||||||||||||||
Sbjct: 160780 caccctatcaaggaaatttttccattcatct 160810
>dbj|AP004685.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
clone:P0017G10
Length = 166700
Score = 133 bits (67), Expect = 1e-028
Identities = 115/131 (87%)
Strand = Plus / Plus
Query: 353 gagaagggcaacatttgccgcacttttggagcatctggcatcgacataaaaagagaatta 412
|||||||||||||| ||||||||||||||||||| |||||| |||||||||||||||
Sbjct: 161295 gagaagggcaacatatgccgcacttttggagcattaggcatctccataaaaagagaattt 161354
Query: 413 gcaaagaaagatatcctccttctagcatccaggtttgtagggacatccatagccgattcc 472
|||||||| ||||||| || |||||||| ||||| ||||||||||||||||| || ||
Sbjct: 161355 gcaaagaacgatatccgtctcctagcatcaaggttcgtagggacatccatagcagactct 161414
Query: 473 ttcaccgtgag 483
||||| |||||
Sbjct: 161415 ttcacagtgag 161425
Score = 69.9 bits (35), Expect = 1e-009
Identities = 50/55 (90%)
Strand = Plus / Plus
Query: 117 cagttcttgtcaaagtttgtccccggtatgatgcccaaaggcgaagctgctcttc 171
||||||||||||| || ||||||| |||||||||||||||||||||| ||||||
Sbjct: 160683 cagttcttgtcaatgtctgtcccctatatgatgcccaaaggcgaagctcctcttc 160737
Score = 67.9 bits (34), Expect = 5e-009
Identities = 91/110 (82%)
Strand = Plus / Plus
Query: 243 ctgggtagattttttgcaaataaaaaaggatggaaactccgtcctcattctgttctgcta 302
|||||||||||||||| || || ||||| |||||||| || |||||||| | ||| | |
Sbjct: 160927 ctgggtagattttttgtaagtagaaaagtatggaaaccccatcctcatttggctcttcca 160986
Query: 303 gtgcttgtgaagagaaaagaacatcttctttataataaggagtcaagaca 352
| || || ||||||||||||||||| || ||||||||||||||||||
Sbjct: 160987 gattatgagaggagaaaagaacatcttccttgtaataaggagtcaagaca 161036
Score = 46.1 bits (23), Expect = 0.018
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 214 caccctttcaagaaaatttttccattcatct 244
|||||| ||||| ||||||||||||||||||
Sbjct: 160780 caccctatcaaggaaatttttccattcatct 160810
>dbj|AP005750.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
clone:OSJNBa0069C14
Length = 150579
Score = 133 bits (67), Expect = 1e-028
Identities = 115/131 (87%)
Strand = Plus / Plus
Query: 353 gagaagggcaacatttgccgcacttttggagcatctggcatcgacataaaaagagaatta 412
|||||||||||||| ||||||||||||||||||| |||||| |||||||||||||||
Sbjct: 22497 gagaagggcaacatatgccgcacttttggagcattaggcatctccataaaaagagaattt 22556
Query: 413 gcaaagaaagatatcctccttctagcatccaggtttgtagggacatccatagccgattcc 472
|||||||| ||||||| || |||||||| ||||| ||||||||||||||||| || ||
Sbjct: 22557 gcaaagaacgatatccgtctcctagcatcaaggttcgtagggacatccatagcagactct 22616
Query: 473 ttcaccgtgag 483
||||| |||||
Sbjct: 22617 ttcacagtgag 22627
Score = 69.9 bits (35), Expect = 1e-009
Identities = 50/55 (90%)
Strand = Plus / Plus
Query: 117 cagttcttgtcaaagtttgtccccggtatgatgcccaaaggcgaagctgctcttc 171
||||||||||||| || ||||||| |||||||||||||||||||||| ||||||
Sbjct: 21885 cagttcttgtcaatgtctgtcccctatatgatgcccaaaggcgaagctcctcttc 21939
Score = 67.9 bits (34), Expect = 5e-009
Identities = 91/110 (82%)
Strand = Plus / Plus
Query: 243 ctgggtagattttttgcaaataaaaaaggatggaaactccgtcctcattctgttctgcta 302
|||||||||||||||| || || ||||| |||||||| || |||||||| | ||| | |
Sbjct: 22129 ctgggtagattttttgtaagtagaaaagtatggaaaccccatcctcatttggctcttcca 22188
Query: 303 gtgcttgtgaagagaaaagaacatcttctttataataaggagtcaagaca 352
| || || ||||||||||||||||| || ||||||||||||||||||
Sbjct: 22189 gattatgagaggagaaaagaacatcttccttgtaataaggagtcaagaca 22238
Score = 46.1 bits (23), Expect = 0.018
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 214 caccctttcaagaaaatttttccattcatct 244
|||||| ||||| ||||||||||||||||||
Sbjct: 21982 caccctatcaaggaaatttttccattcatct 22012
>gb|AACV01014976.1| Oryza sativa (japonica cultivar-group) chromosome 6 Ctg014976, whole
genome shotgun sequence
Length = 21689
Score = 133 bits (67), Expect = 1e-028
Identities = 115/131 (87%)
Strand = Plus / Minus
Query: 353 gagaagggcaacatttgccgcacttttggagcatctggcatcgacataaaaagagaatta 412
|||||||||||||| ||||||||||||||||||| |||||| |||||||||||||||
Sbjct: 19788 gagaagggcaacatatgccgcacttttggagcattaggcatctccataaaaagagaattt 19729
Query: 413 gcaaagaaagatatcctccttctagcatccaggtttgtagggacatccatagccgattcc 472
|||||||| ||||||| || |||||||| ||||| ||||||||||||||||| || ||
Sbjct: 19728 gcaaagaacgatatccgtctcctagcatcaaggttcgtagggacatccatagcagactct 19669
Query: 473 ttcaccgtgag 483
||||| |||||
Sbjct: 19668 ttcacagtgag 19658
Score = 69.9 bits (35), Expect = 1e-009
Identities = 50/55 (90%)
Strand = Plus / Minus
Query: 117 cagttcttgtcaaagtttgtccccggtatgatgcccaaaggcgaagctgctcttc 171
||||||||||||| || ||||||| |||||||||||||||||||||| ||||||
Sbjct: 20400 cagttcttgtcaatgtctgtcccctatatgatgcccaaaggcgaagctcctcttc 20346
Score = 67.9 bits (34), Expect = 5e-009
Identities = 91/110 (82%)
Strand = Plus / Minus
Query: 243 ctgggtagattttttgcaaataaaaaaggatggaaactccgtcctcattctgttctgcta 302
|||||||||||||||| || || ||||| |||||||| || |||||||| | ||| | |
Sbjct: 20156 ctgggtagattttttgtaagtagaaaagtatggaaaccccatcctcatttggctcttcca 20097
Query: 303 gtgcttgtgaagagaaaagaacatcttctttataataaggagtcaagaca 352
| || || ||||||||||||||||| || ||||||||||||||||||
Sbjct: 20096 gattatgagaggagaaaagaacatcttccttgtaataaggagtcaagaca 20047
Score = 46.1 bits (23), Expect = 0.018
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 214 caccctttcaagaaaatttttccattcatct 244
|||||| ||||| ||||||||||||||||||
Sbjct: 20303 caccctatcaaggaaatttttccattcatct 20273
>gb|CH401216.1| Oryza sativa (japonica cultivar-group) chromosome 6 scaffold000053 genomic
scaffold, whole genome shotgun sequence
Length = 12033173
Score = 133 bits (67), Expect = 1e-028
Identities = 115/131 (87%)
Strand = Plus / Plus
Query: 353 gagaagggcaacatttgccgcacttttggagcatctggcatcgacataaaaagagaatta 412
|||||||||||||| ||||||||||||||||||| |||||| |||||||||||||||
Sbjct: 11857126 gagaagggcaacatatgccgcacttttggagcattaggcatctccataaaaagagaattt 11857185
Query: 413 gcaaagaaagatatcctccttctagcatccaggtttgtagggacatccatagccgattcc 472
|||||||| ||||||| || |||||||| ||||| ||||||||||||||||| || ||
Sbjct: 11857186 gcaaagaacgatatccgtctcctagcatcaaggttcgtagggacatccatagcagactct 11857245
Query: 473 ttcaccgtgag 483
||||| |||||
Sbjct: 11857246 ttcacagtgag 11857256
Score = 69.9 bits (35), Expect = 1e-009
Identities = 50/55 (90%)
Strand = Plus / Plus
Query: 117 cagttcttgtcaaagtttgtccccggtatgatgcccaaaggcgaagctgctcttc 171
||||||||||||| || ||||||| |||||||||||||||||||||| ||||||
Sbjct: 11856514 cagttcttgtcaatgtctgtcccctatatgatgcccaaaggcgaagctcctcttc 11856568
Score = 67.9 bits (34), Expect = 5e-009
Identities = 91/110 (82%)
Strand = Plus / Plus
Query: 243 ctgggtagattttttgcaaataaaaaaggatggaaactccgtcctcattctgttctgcta 302
|||||||||||||||| || || ||||| |||||||| || |||||||| | ||| | |
Sbjct: 11856758 ctgggtagattttttgtaagtagaaaagtatggaaaccccatcctcatttggctcttcca 11856817
Query: 303 gtgcttgtgaagagaaaagaacatcttctttataataaggagtcaagaca 352
| || || ||||||||||||||||| || ||||||||||||||||||
Sbjct: 11856818 gattatgagaggagaaaagaacatcttccttgtaataaggagtcaagaca 11856867
Score = 46.1 bits (23), Expect = 0.018
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 214 caccctttcaagaaaatttttccattcatct 244
|||||| ||||| ||||||||||||||||||
Sbjct: 11856611 caccctatcaaggaaatttttccattcatct 11856641
>gb|CM000143.1| Oryza sativa (japonica cultivar-group) chromosome 6, whole genome shotgun
sequence
Length = 29740507
Score = 133 bits (67), Expect = 1e-028
Identities = 115/131 (87%)
Strand = Plus / Plus
Query: 353 gagaagggcaacatttgccgcacttttggagcatctggcatcgacataaaaagagaatta 412
|||||||||||||| ||||||||||||||||||| |||||| |||||||||||||||
Sbjct: 29555863 gagaagggcaacatatgccgcacttttggagcattaggcatctccataaaaagagaattt 29555922
Query: 413 gcaaagaaagatatcctccttctagcatccaggtttgtagggacatccatagccgattcc 472
|||||||| ||||||| || |||||||| ||||| ||||||||||||||||| || ||
Sbjct: 29555923 gcaaagaacgatatccgtctcctagcatcaaggttcgtagggacatccatagcagactct 29555982
Query: 473 ttcaccgtgag 483
||||| |||||
Sbjct: 29555983 ttcacagtgag 29555993
Score = 69.9 bits (35), Expect = 1e-009
Identities = 50/55 (90%)
Strand = Plus / Plus
Query: 117 cagttcttgtcaaagtttgtccccggtatgatgcccaaaggcgaagctgctcttc 171
||||||||||||| || ||||||| |||||||||||||||||||||| ||||||
Sbjct: 29555251 cagttcttgtcaatgtctgtcccctatatgatgcccaaaggcgaagctcctcttc 29555305
Score = 67.9 bits (34), Expect = 5e-009
Identities = 91/110 (82%)
Strand = Plus / Plus
Query: 243 ctgggtagattttttgcaaataaaaaaggatggaaactccgtcctcattctgttctgcta 302
|||||||||||||||| || || ||||| |||||||| || |||||||| | ||| | |
Sbjct: 29555495 ctgggtagattttttgtaagtagaaaagtatggaaaccccatcctcatttggctcttcca 29555554
Query: 303 gtgcttgtgaagagaaaagaacatcttctttataataaggagtcaagaca 352
| || || ||||||||||||||||| || ||||||||||||||||||
Sbjct: 29555555 gattatgagaggagaaaagaacatcttccttgtaataaggagtcaagaca 29555604
Score = 46.1 bits (23), Expect = 0.018
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 214 caccctttcaagaaaatttttccattcatct 244
|||||| ||||| ||||||||||||||||||
Sbjct: 29555348 caccctatcaaggaaatttttccattcatct 29555378
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
sequence
Length = 30731886
Score = 133 bits (67), Expect = 1e-028
Identities = 115/131 (87%)
Strand = Plus / Plus
Query: 353 gagaagggcaacatttgccgcacttttggagcatctggcatcgacataaaaagagaatta 412
|||||||||||||| ||||||||||||||||||| |||||| |||||||||||||||
Sbjct: 30523934 gagaagggcaacatatgccgcacttttggagcattaggcatctccataaaaagagaattt 30523993
Query: 413 gcaaagaaagatatcctccttctagcatccaggtttgtagggacatccatagccgattcc 472
|||||||| ||||||| || |||||||| ||||| ||||||||||||||||| || ||
Sbjct: 30523994 gcaaagaacgatatccgtctcctagcatcaaggttcgtagggacatccatagcagactct 30524053
Query: 473 ttcaccgtgag 483
||||| |||||
Sbjct: 30524054 ttcacagtgag 30524064
Score = 69.9 bits (35), Expect = 1e-009
Identities = 50/55 (90%)
Strand = Plus / Plus
Query: 117 cagttcttgtcaaagtttgtccccggtatgatgcccaaaggcgaagctgctcttc 171
||||||||||||| || ||||||| |||||||||||||||||||||| ||||||
Sbjct: 30523322 cagttcttgtcaatgtctgtcccctatatgatgcccaaaggcgaagctcctcttc 30523376
Score = 67.9 bits (34), Expect = 5e-009
Identities = 91/110 (82%)
Strand = Plus / Plus
Query: 243 ctgggtagattttttgcaaataaaaaaggatggaaactccgtcctcattctgttctgcta 302
|||||||||||||||| || || ||||| |||||||| || |||||||| | ||| | |
Sbjct: 30523566 ctgggtagattttttgtaagtagaaaagtatggaaaccccatcctcatttggctcttcca 30523625
Query: 303 gtgcttgtgaagagaaaagaacatcttctttataataaggagtcaagaca 352
| || || ||||||||||||||||| || ||||||||||||||||||
Sbjct: 30523626 gattatgagaggagaaaagaacatcttccttgtaataaggagtcaagaca 30523675
Score = 46.1 bits (23), Expect = 0.018
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 214 caccctttcaagaaaatttttccattcatct 244
|||||| ||||| ||||||||||||||||||
Sbjct: 30523419 caccctatcaaggaaatttttccattcatct 30523449
>gb|AZ126558.1|AZ126558 OSJNBb0078B11r CUGI Rice BAC Library (EcoRI) Oryza sativa (japonica
cultivar-group) genomic clone OSJNBb0078B11r, DNA
sequence
Length = 834
Score = 71.9 bits (36), Expect = 3e-010
Identities = 45/48 (93%)
Strand = Plus / Plus
Query: 117 cagttcttgtcaaagtttgtccccggtatgatgcccaaaggcgaagct 164
||||||| ||||||||||| |||| |||||||||||||||||||||||
Sbjct: 532 cagttctcgtcaaagtttggcccctgtatgatgcccaaaggcgaagct 579
>dbj|AG210767.1| Oryza sativa (japonica cultivar-group) DNA, clone:NF2786_0_501_1A,
3' flanking sequence of Tos17 insertion in rice strain
NF2786, genomic survey sequence
Length = 778
Score = 50.1 bits (25), Expect = 0.001
Identities = 49/57 (85%)
Strand = Plus / Minus
Query: 430 ccttctagcatccaggtttgtagggacatccatagccgattccttcaccgtgagtaa 486
||||||||| ||||| |||| |||||||||||||| || || ||||| ||||||||
Sbjct: 250 ccttctagcctccagatttgaggggacatccatagcagactctttcacagtgagtaa 194
>dbj|AG023962.1| Oryza sativa (japonica cultivar-group) DNA, clone:ND2066_0_502_1A,
3' flanking sequence of Tos17 insertion in rice strain
ND2066, genomic survey sequence
Length = 662
Score = 50.1 bits (25), Expect = 0.001
Identities = 49/57 (85%)
Strand = Plus / Minus
Query: 430 ccttctagcatccaggtttgtagggacatccatagccgattccttcaccgtgagtaa 486
||||||||| ||||| |||| |||||||||||||| || || ||||| ||||||||
Sbjct: 552 ccttctagcctccagatttgaggggacatccatagcagactctttcacagtgagtaa 496
>gb|AC104427.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1015F07,
complete sequence
Length = 117612
Score = 50.1 bits (25), Expect = 0.001
Identities = 49/57 (85%)
Strand = Plus / Plus
Query: 430 ccttctagcatccaggtttgtagggacatccatagccgattccttcaccgtgagtaa 486
||||||||| ||||| |||| |||||||||||||| || || ||||| ||||||||
Sbjct: 105352 ccttctagcctccagatttgaggggacatccatagcagactctttcacagtgagtaa 105408
>gb|AC144426.1| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJA1015F07,
complete sequence
Length = 127098
Score = 50.1 bits (25), Expect = 0.001
Identities = 49/57 (85%)
Strand = Plus / Plus
Query: 430 ccttctagcatccaggtttgtagggacatccatagccgattccttcaccgtgagtaa 486
||||||||| ||||| |||| |||||||||||||| || || ||||| ||||||||
Sbjct: 47740 ccttctagcctccagatttgaggggacatccatagcagactctttcacagtgagtaa 47796
>gb|AACV01005795.1| Oryza sativa (japonica cultivar-group) chromosome 3 Ctg005795, whole
genome shotgun sequence
Length = 23395
Score = 50.1 bits (25), Expect = 0.001
Identities = 49/57 (85%)
Strand = Plus / Minus
Query: 430 ccttctagcatccaggtttgtagggacatccatagccgattccttcaccgtgagtaa 486
||||||||| ||||| |||| |||||||||||||| || || ||||| ||||||||
Sbjct: 15694 ccttctagcctccagatttgaggggacatccatagcagactctttcacagtgagtaa 15638
>ref|NM_187591.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 4929
Score = 50.1 bits (25), Expect = 0.001
Identities = 49/57 (85%)
Strand = Plus / Minus
Query: 430 ccttctagcatccaggtttgtagggacatccatagccgattccttcaccgtgagtaa 486
||||||||| ||||| |||| |||||||||||||| || || ||||| ||||||||
Sbjct: 2196 ccttctagcctccagatttgaggggacatccatagcagactctttcacagtgagtaa 2140
Score = 46.1 bits (23), Expect = 0.018
Identities = 50/59 (84%)
Strand = Plus / Minus
Query: 233 ttccattcatctgggtagattttttgcaaataaaaaaggatggaaactccgtcctcatt 291
||||||||||||||||| ||||| || | || || ||| |||||||||| ||||||||
Sbjct: 2393 ttccattcatctgggtaaattttctgtaggtagaatagggtggaaactccatcctcatt 2335
>ref|NT_107183.1| Oryza sativa (japonica cultivar-group)
Length = 1680144
Score = 50.1 bits (25), Expect = 0.001
Identities = 49/57 (85%)
Strand = Plus / Plus
Query: 430 ccttctagcatccaggtttgtagggacatccatagccgattccttcaccgtgagtaa 486
||||||||| ||||| |||| |||||||||||||| || || ||||| ||||||||
Sbjct: 1568177 ccttctagcctccagatttgaggggacatccatagcagactctttcacagtgagtaa 1568233
>gb|CH401173.1| Oryza sativa (japonica cultivar-group) chromosome 3 scaffold000010 genomic
scaffold, whole genome shotgun sequence
Length = 13858245
Score = 50.1 bits (25), Expect = 0.001
Identities = 49/57 (85%)
Strand = Plus / Plus
Query: 430 ccttctagcatccaggtttgtagggacatccatagccgattccttcaccgtgagtaa 486
||||||||| ||||| |||| |||||||||||||| || || ||||| ||||||||
Sbjct: 1574233 ccttctagcctccagatttgaggggacatccatagcagactctttcacagtgagtaa 1574289
>gb|CM000140.1| Oryza sativa (japonica cultivar-group) chromosome 3, whole genome shotgun
sequence
Length = 37803064
Score = 50.1 bits (25), Expect = 0.001
Identities = 49/57 (85%)
Strand = Plus / Plus
Query: 430 ccttctagcatccaggtttgtagggacatccatagccgattccttcaccgtgagtaa 486
||||||||| ||||| |||| |||||||||||||| || || ||||| ||||||||
Sbjct: 1766595 ccttctagcctccagatttgaggggacatccatagcagactctttcacagtgagtaa 1766651
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
sequence
Length = 36192742
Score = 50.1 bits (25), Expect = 0.001
Identities = 49/57 (85%)
Strand = Plus / Plus
Query: 430 ccttctagcatccaggtttgtagggacatccatagccgattccttcaccgtgagtaa 486
||||||||| ||||| |||| |||||||||||||| || || ||||| ||||||||
Sbjct: 1568177 ccttctagcctccagatttgaggggacatccatagcagactctttcacagtgagtaa 1568233
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
Length = 36102668
Score = 50.1 bits (25), Expect = 0.001
Identities = 49/57 (85%)
Strand = Plus / Plus
Query: 430 ccttctagcatccaggtttgtagggacatccatagccgattccttcaccgtgagtaa 486
||||||||| ||||| |||| |||||||||||||| || || ||||| ||||||||
Sbjct: 1568179 ccttctagcctccagatttgaggggacatccatagcagactctttcacagtgagtaa 1568235
>ref|NM_193204.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 4710
Score = 46.1 bits (23), Expect = 0.018
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 221 tcaagaaaatttttccattcatctgggtagatttt 255
||||||||||| |||||||||||||| || |||||
Sbjct: 3389 tcaagaaaattcttccattcatctggatatatttt 3355
>gb|CF328591.1|CF328591 NACL--03-J03.b1 Rice callus plasmid cDNA library (NACL) Oryza
sativa (japonica cultivar-group) cDNA clone
NACL--03-J03, mRNA sequence
Length = 570
Score = 44.1 bits (22), Expect = 0.073
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 66 agaattcatcagtgctgatactaaatctttcttg 99
||||| |||||| |||||||| ||||||||||||
Sbjct: 84 agaatccatcagggctgataccaaatctttcttg 51
>gb|CF329508.1|CF329508 NACL--04-N18.b1 Rice callus plasmid cDNA library (NACL) Oryza
sativa (japonica cultivar-group) cDNA clone
NACL--04-N18, mRNA sequence
Length = 550
Score = 44.1 bits (22), Expect = 0.073
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 66 agaattcatcagtgctgatactaaatctttcttg 99
||||| |||||| |||||||| ||||||||||||
Sbjct: 84 agaatccatcagggctgataccaaatctttcttg 51
>dbj|AK064082.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-100-B04, full
insert sequence
Length = 1832
Score = 44.1 bits (22), Expect = 0.073
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 66 agaattcatcagtgctgatactaaatctttcttg 99
||||| |||||| |||||||| ||||||||||||
Sbjct: 375 agaatccatcagggctgataccaaatctttcttg 342
>dbj|AK101426.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033038E19, full
insert sequence
Length = 1836
Score = 44.1 bits (22), Expect = 0.073
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 66 agaattcatcagtgctgatactaaatctttcttg 99
||||| |||||| |||||||| ||||||||||||
Sbjct: 379 agaatccatcagggctgataccaaatctttcttg 346
>gb|AACV01002509.1| Oryza sativa (japonica cultivar-group) chromosome 1 Ctg002509, whole
genome shotgun sequence
Length = 69030
Score = 44.1 bits (22), Expect = 0.073
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 66 agaattcatcagtgctgatactaaatctttcttg 99
||||| |||||| |||||||| ||||||||||||
Sbjct: 23061 agaatccatcagggctgataccaaatctttcttg 23028
>dbj|AP003221.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
clone:P0003D09
Length = 161970
Score = 44.1 bits (22), Expect = 0.073
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 66 agaattcatcagtgctgatactaaatctttcttg 99
||||| |||||| |||||||| ||||||||||||
Sbjct: 45183 agaatccatcagggctgataccaaatctttcttg 45150
>dbj|AP003293.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
clone:P0691E06
Length = 166497
Score = 44.1 bits (22), Expect = 0.073
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 66 agaattcatcagtgctgatactaaatctttcttg 99
||||| |||||| |||||||| ||||||||||||
Sbjct: 152787 agaatccatcagggctgataccaaatctttcttg 152754
>dbj|BA000010.8| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43342410
Score = 44.1 bits (22), Expect = 0.073
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 66 agaattcatcagtgctgatactaaatctttcttg 99
||||| |||||| |||||||| ||||||||||||
Sbjct: 33994410 agaatccatcagggctgataccaaatctttcttg 33994377
Score = 42.1 bits (21), Expect = 0.29
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 221 tcaagaaaatttttccattcatctg 245
||||||||||| |||||||||||||
Sbjct: 19342476 tcaagaaaattcttccattcatctg 19342500
>ref|NM_190932.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 1482
Score = 44.1 bits (22), Expect = 0.073
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 66 agaattcatcagtgctgatactaaatctttcttg 99
||||| |||||| |||||||| ||||||||||||
Sbjct: 327 agaatccatcagggctgataccaaatctttcttg 294
>ref|NT_079927.2| Oryza sativa (japonica cultivar-group)
Length = 14818989
Score = 44.1 bits (22), Expect = 0.073
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 66 agaattcatcagtgctgatactaaatctttcttg 99
||||| |||||| |||||||| ||||||||||||
Sbjct: 8441793 agaatccatcagggctgataccaaatctttcttg 8441760
>gb|CH401168.1| Oryza sativa (japonica cultivar-group) chromosome 1 scaffold000005 genomic
scaffold, whole genome shotgun sequence
Length = 17394610
Score = 44.1 bits (22), Expect = 0.073
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 66 agaattcatcagtgctgatactaaatctttcttg 99
||||| |||||| |||||||| ||||||||||||
Sbjct: 8305570 agaatccatcagggctgataccaaatctttcttg 8305537
>gb|CM000138.1| Oryza sativa (japonica cultivar-group) chromosome 1, whole genome shotgun
sequence
Length = 42596331
Score = 44.1 bits (22), Expect = 0.073
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 66 agaattcatcagtgctgatactaaatctttcttg 99
||||| |||||| |||||||| ||||||||||||
Sbjct: 33507291 agaatccatcagggctgataccaaatctttcttg 33507258
Score = 42.1 bits (21), Expect = 0.29
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 221 tcaagaaaatttttccattcatctg 245
||||||||||| |||||||||||||
Sbjct: 19018717 tcaagaaaattcttccattcatctg 19018741
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43261740
Score = 44.1 bits (22), Expect = 0.073
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 66 agaattcatcagtgctgatactaaatctttcttg 99
||||| |||||| |||||||| ||||||||||||
Sbjct: 33913740 agaatccatcagggctgataccaaatctttcttg 33913707
Score = 42.1 bits (21), Expect = 0.29
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 221 tcaagaaaatttttccattcatctg 245
||||||||||| |||||||||||||
Sbjct: 19263759 tcaagaaaattcttccattcatctg 19263783
>gb|AQ574894.1|AQ574894 nbxb0086E18f CUGI Rice BAC Library Oryza sativa (japonica
cultivar-group) genomic clone nbxb0086E18f, DNA sequence
Length = 704
Score = 42.1 bits (21), Expect = 0.29
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 221 tcaagaaaatttttccattcatctg 245
||||||||||| |||||||||||||
Sbjct: 476 tcaagaaaattcttccattcatctg 500
>gb|AACV01001409.1| Oryza sativa (japonica cultivar-group) chromosome 1 Ctg001409, whole
genome shotgun sequence
Length = 30879
Score = 42.1 bits (21), Expect = 0.29
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 221 tcaagaaaatttttccattcatctg 245
||||||||||| |||||||||||||
Sbjct: 16794 tcaagaaaattcttccattcatctg 16818
>ref|NT_079926.2| Oryza sativa (japonica cultivar-group)
Length = 8469246
Score = 42.1 bits (21), Expect = 0.29
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 221 tcaagaaaatttttccattcatctg 245
||||||||||| |||||||||||||
Sbjct: 2260708 tcaagaaaattcttccattcatctg 2260732
>dbj|AP003447.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
clone:OJ1619_F12
Length = 133028
Score = 42.1 bits (21), Expect = 0.29
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 221 tcaagaaaatttttccattcatctg 245
||||||||||| |||||||||||||
Sbjct: 83380 tcaagaaaattcttccattcatctg 83404
>gb|CH401166.1| Oryza sativa (japonica cultivar-group) chromosome 1 scaffold000003 genomic
scaffold, whole genome shotgun sequence
Length = 8539496
Score = 42.1 bits (21), Expect = 0.29
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 221 tcaagaaaatttttccattcatctg 245
||||||||||| |||||||||||||
Sbjct: 2393594 tcaagaaaattcttccattcatctg 2393618
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 863,606
Number of Sequences: 438736
Number of extensions: 863606
Number of successful extensions: 23130
Number of sequences better than 0.5: 49
Number of HSP's better than 0.5 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 22254
Number of HSP's gapped (non-prelim): 866
length of query: 513
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 492
effective length of database: 2,791,206,460
effective search space: 1373273578320
effective search space used: 1373273578320
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)