BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QCN21e10.yg.2.1
(247 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
ref|NT_107235.1| Oryza sativa (japonica cultivar-group) 244 2e-062
dbj|AP004685.3| Oryza sativa (japonica cultivar-group) geno... 244 2e-062
dbj|AP005750.3| Oryza sativa (japonica cultivar-group) geno... 244 2e-062
gb|AACV01014975.1| Oryza sativa (japonica cultivar-group) c... 244 2e-062
gb|CH401216.1| Oryza sativa (japonica cultivar-group) chrom... 244 2e-062
gb|CM000143.1| Oryza sativa (japonica cultivar-group) chrom... 244 2e-062
dbj|AP008212.1| Oryza sativa (japonica cultivar-group) geno... 244 2e-062
dbj|AP004082.3| Oryza sativa (japonica cultivar-group) geno... 186 4e-045
dbj|AP005290.2| Oryza sativa (japonica cultivar-group) geno... 186 4e-045
gb|AACV01005686.1| Oryza sativa (japonica cultivar-group) c... 186 4e-045
ref|NT_107182.1| Oryza sativa (japonica cultivar-group) 186 4e-045
gb|CH401170.1| Oryza sativa (japonica cultivar-group) chrom... 186 4e-045
gb|CM000139.1| Oryza sativa (japonica cultivar-group) chrom... 186 4e-045
dbj|AP008208.1| Oryza sativa (japonica cultivar-group) geno... 186 4e-045
gb|CB659583.1|CB659583 OSJNEc16L01.f OSJNEc Oryza sativa (j... 182 6e-044
gb|AY324384.1| Oryza sativa (japonica cultivar-group) callo... 182 6e-044
ref|XM_468556.1| Oryza sativa (japonica cultivar-group), mRNA 182 6e-044
dbj|AG208568.1| Oryza sativa (japonica cultivar-group) DNA,... 80 6e-013
dbj|AG208570.1| Oryza sativa (japonica cultivar-group) DNA,... 80 6e-013
dbj|AG206877.1| Oryza sativa (japonica cultivar-group) DNA,... 80 6e-013
dbj|AP003454.1| Oryza sativa (japonica cultivar-group) chro... 80 6e-013
dbj|AK100271.1| Oryza sativa (japonica cultivar-group) cDNA... 80 6e-013
gb|AACV01013162.1| Oryza sativa (japonica cultivar-group) c... 80 6e-013
dbj|AP007226.1| Oryza sativa (japonica cultivar-group) geno... 80 6e-013
dbj|AP007257.2| Oryza sativa (japonica cultivar-group) geno... 80 6e-013
gb|CH401209.1| Oryza sativa (japonica cultivar-group) chrom... 80 6e-013
gb|AQ272832.1|AQ272832 nbxb0028B24r CUGI Rice BAC Library O... 78 2e-012
gb|AQ687725.1|AQ687725 nbxb0075F07f CUGI Rice BAC Library O... 78 2e-012
gb|AQ840847.1|AQ840847 nbxb0071P12r CUGI Rice BAC Library O... 78 2e-012
dbj|AP005614.2| Oryza sativa (japonica cultivar-group) geno... 78 2e-012
gb|AACV01003740.1| Oryza sativa (japonica cultivar-group) c... 78 2e-012
ref|NT_107178.1| Oryza sativa (japonica cultivar-group) 78 2e-012
gb|CH401169.1| Oryza sativa (japonica cultivar-group) chrom... 78 2e-012
dbj|AG020899.1| Oryza sativa (japonica cultivar-group) DNA,... 76 9e-012
dbj|AG210876.1| Oryza sativa (japonica cultivar-group) DNA,... 74 4e-011
dbj|AG205959.1| Oryza sativa (japonica cultivar-group) DNA,... 74 4e-011
dbj|AK062279.1| Oryza sativa (japonica cultivar-group) cDNA... 74 4e-011
gb|AC104427.2| Oryza sativa (japonica cultivar-group) chrom... 74 4e-011
gb|AC144426.1| Oryza sativa (japonica cultivar-group) chrom... 74 4e-011
dbj|AK105008.2| Oryza sativa (japonica cultivar-group) cDNA... 74 4e-011
gb|AACV01005795.1| Oryza sativa (japonica cultivar-group) c... 74 4e-011
ref|NM_187591.1| Oryza sativa (japonica cultivar-group), p... 74 4e-011
ref|NT_107183.1| Oryza sativa (japonica cultivar-group) 74 4e-011
gb|CH401173.1| Oryza sativa (japonica cultivar-group) chrom... 74 4e-011
gb|CM000140.1| Oryza sativa (japonica cultivar-group) chrom... 74 4e-011
dbj|AP008209.1| Oryza sativa (japonica cultivar-group) geno... 74 4e-011
gb|DP000009.1| Oryza sativa (japonica cultivar-group) chrom... 74 4e-011
gb|AACV01002091.1| Oryza sativa (japonica cultivar-group) c... 70 6e-010
dbj|BA000010.8| Oryza sativa (japonica cultivar-group) geno... 70 6e-010
ref|NM_191973.1| Oryza sativa (japonica cultivar-group), p... 70 6e-010
ref|NT_079927.2| Oryza sativa (japonica cultivar-group) 70 6e-010
dbj|AP003223.3| Oryza sativa (japonica cultivar-group) geno... 70 6e-010
dbj|AP003264.3| Oryza sativa (japonica cultivar-group) geno... 70 6e-010
gb|CH401168.1| Oryza sativa (japonica cultivar-group) chrom... 70 6e-010
gb|CM000138.1| Oryza sativa (japonica cultivar-group) chrom... 70 6e-010
dbj|AP008207.1| Oryza sativa (japonica cultivar-group) geno... 70 6e-010
dbj|AG210242.1| Oryza sativa (japonica cultivar-group) DNA,... 68 2e-009
ref|NM_193211.1| Oryza sativa (japonica cultivar-group), p... 54 3e-005
gb|CB642889.1|CB642889 OSJNEb03E21.f OSJNEb Oryza sativa (j... 52 1e-004
gb|CW883855.1|CW883855 Rice CISP Intron:I00_X00_F_PRSC1_002... 48 0.002
dbj|AK064446.1| Oryza sativa (japonica cultivar-group) cDNA... 48 0.002
gb|AACV01001413.1| Oryza sativa (japonica cultivar-group) c... 48 0.002
ref|NT_079926.2| Oryza sativa (japonica cultivar-group) 48 0.002
dbj|AP003447.2| Oryza sativa (japonica cultivar-group) geno... 48 0.002
dbj|AP003445.2| Oryza sativa (japonica cultivar-group) geno... 48 0.002
gb|CH401166.1| Oryza sativa (japonica cultivar-group) chrom... 48 0.002
dbj|AG211136.1| Oryza sativa (japonica cultivar-group) DNA,... 46 0.008
dbj|AG213128.1| Oryza sativa (japonica cultivar-group) DNA,... 46 0.008
dbj|AG213976.1| Oryza sativa (japonica cultivar-group) DNA,... 46 0.008
gb|CW883569.1|CW883569 Rice CISP Intron:I00_X00_F_PRSC1_002... 46 0.008
gb|AACV01001409.1| Oryza sativa (japonica cultivar-group) c... 46 0.008
ref|NM_193203.1| Oryza sativa (japonica cultivar-group), p... 46 0.008
dbj|AG213126.1| Oryza sativa (japonica cultivar-group) DNA,... 44 0.034
dbj|AG024570.1| Oryza sativa (japonica cultivar-group) DNA,... 44 0.034
gb|CF452785.1|CF452785 EST00001 Subtracted cDNA library of ... 44 0.034
dbj|AG213037.1| Oryza sativa (japonica cultivar-group) DNA,... 42 0.13
dbj|AG213548.1| Oryza sativa (japonica cultivar-group) DNA,... 42 0.13
dbj|AG213723.1| Oryza sativa (japonica cultivar-group) DNA,... 42 0.13
dbj|AG213908.1| Oryza sativa (japonica cultivar-group) DNA,... 42 0.13
dbj|AG021086.1| Oryza sativa (japonica cultivar-group) DNA,... 42 0.13
dbj|AG024555.1| Oryza sativa (japonica cultivar-group) DNA,... 42 0.13
dbj|AB156800.1| Oryza sativa (japonica cultivar-group) DNA,... 42 0.13
dbj|AB157529.1| Oryza sativa (japonica cultivar-group) DNA,... 42 0.13
dbj|AB157563.2| Oryza sativa (japonica cultivar-group) DNA,... 42 0.13
dbj|BA000029.3| Oryza sativa (japonica cultivar-group) mito... 42 0.13
dbj|AB155292.1| Oryza sativa (japonica cultivar-group) DNA,... 40 0.52
gb|CW883568.1|CW883568 Rice CISP Intron:I00_X00_F_PRSC1_001... 40 0.52
gb|CW883854.1|CW883854 Rice CISP Intron:I00_X00_F_PRSC1_001... 40 0.52
dbj|AG209278.1| Oryza sativa (japonica cultivar-group) DNA,... 38 2.1
dbj|AG213123.1| Oryza sativa (japonica cultivar-group) DNA,... 38 2.1
dbj|AG213124.1| Oryza sativa (japonica cultivar-group) DNA,... 38 2.1
dbj|AG213125.1| Oryza sativa (japonica cultivar-group) DNA,... 38 2.1
dbj|AG213129.1| Oryza sativa (japonica cultivar-group) DNA,... 38 2.1
dbj|AG213207.1| Oryza sativa (japonica cultivar-group) DNA,... 38 2.1
dbj|AG213285.1| Oryza sativa (japonica cultivar-group) DNA,... 38 2.1
dbj|AG213309.1| Oryza sativa (japonica cultivar-group) DNA,... 38 2.1
dbj|AG213581.1| Oryza sativa (japonica cultivar-group) DNA,... 38 2.1
dbj|AG213722.1| Oryza sativa (japonica cultivar-group) DNA,... 38 2.1
dbj|AG213724.1| Oryza sativa (japonica cultivar-group) DNA,... 38 2.1
dbj|AG213745.1| Oryza sativa (japonica cultivar-group) DNA,... 38 2.1
dbj|AG213872.1| Oryza sativa (japonica cultivar-group) DNA,... 38 2.1
dbj|AG213959.1| Oryza sativa (japonica cultivar-group) DNA,... 38 2.1
dbj|AG214163.1| Oryza sativa (japonica cultivar-group) DNA,... 38 2.1
dbj|AG214194.1| Oryza sativa (japonica cultivar-group) DNA,... 38 2.1
dbj|AG214478.1| Oryza sativa (japonica cultivar-group) DNA,... 38 2.1
dbj|AG021970.1| Oryza sativa (japonica cultivar-group) DNA,... 38 2.1
dbj|AG024540.1| Oryza sativa (japonica cultivar-group) DNA,... 38 2.1
dbj|AG024553.1| Oryza sativa (japonica cultivar-group) DNA,... 38 2.1
dbj|AG024556.1| Oryza sativa (japonica cultivar-group) DNA,... 38 2.1
dbj|AG024559.1| Oryza sativa (japonica cultivar-group) DNA,... 38 2.1
dbj|AG024565.1| Oryza sativa (japonica cultivar-group) DNA,... 38 2.1
dbj|AG024785.1| Oryza sativa (japonica cultivar-group) DNA,... 38 2.1
dbj|AG024874.1| Oryza sativa (japonica cultivar-group) DNA,... 38 2.1
dbj|AG025267.1| Oryza sativa (japonica cultivar-group) DNA,... 38 2.1
dbj|AG025364.1| Oryza sativa (japonica cultivar-group) DNA,... 38 2.1
dbj|AG025393.1| Oryza sativa (japonica cultivar-group) DNA,... 38 2.1
dbj|AG025457.1| Oryza sativa (japonica cultivar-group) DNA,... 38 2.1
dbj|AG025462.1| Oryza sativa (japonica cultivar-group) DNA,... 38 2.1
dbj|AG025500.1| Oryza sativa (japonica cultivar-group) DNA,... 38 2.1
dbj|AG025544.1| Oryza sativa (japonica cultivar-group) DNA,... 38 2.1
dbj|AB154987.1| Oryza sativa (japonica cultivar-group) DNA,... 38 2.1
dbj|AB155450.1| Oryza sativa (japonica cultivar-group) DNA,... 38 2.1
dbj|AB155496.1| Oryza sativa (japonica cultivar-group) DNA,... 38 2.1
dbj|AB155981.1| Oryza sativa (japonica cultivar-group) DNA,... 38 2.1
dbj|AB156010.1| Oryza sativa (japonica cultivar-group) DNA,... 38 2.1
dbj|AB156159.1| Oryza sativa (japonica cultivar-group) DNA,... 38 2.1
dbj|AB156243.1| Oryza sativa (japonica cultivar-group) DNA,... 38 2.1
dbj|AB156331.1| Oryza sativa (japonica cultivar-group) DNA,... 38 2.1
dbj|AB156464.1| Oryza sativa (japonica cultivar-group) DNA,... 38 2.1
dbj|AB156769.1| Oryza sativa (japonica cultivar-group) DNA,... 38 2.1
dbj|AB156809.1| Oryza sativa (japonica cultivar-group) DNA,... 38 2.1
dbj|AB156813.1| Oryza sativa (japonica cultivar-group) DNA,... 38 2.1
dbj|AB156889.1| Oryza sativa (japonica cultivar-group) DNA,... 38 2.1
dbj|AB156947.1| Oryza sativa (japonica cultivar-group) DNA,... 38 2.1
dbj|AB157011.1| Oryza sativa (japonica cultivar-group) DNA,... 38 2.1
dbj|AB157065.1| Oryza sativa (japonica cultivar-group) DNA,... 38 2.1
dbj|AB157080.1| Oryza sativa (japonica cultivar-group) DNA,... 38 2.1
dbj|AB157086.1| Oryza sativa (japonica cultivar-group) DNA,... 38 2.1
dbj|AB157316.1| Oryza sativa (japonica cultivar-group) DNA,... 38 2.1
dbj|AB157330.1| Oryza sativa (japonica cultivar-group) DNA,... 38 2.1
dbj|AB157360.1| Oryza sativa (japonica cultivar-group) DNA,... 38 2.1
dbj|AB157374.1| Oryza sativa (japonica cultivar-group) DNA,... 38 2.1
dbj|AB157397.1| Oryza sativa (japonica cultivar-group) DNA,... 38 2.1
dbj|AB157398.1| Oryza sativa (japonica cultivar-group) DNA,... 38 2.1
dbj|AB157411.1| Oryza sativa (japonica cultivar-group) DNA,... 38 2.1
dbj|AB157416.1| Oryza sativa (japonica cultivar-group) DNA,... 38 2.1
dbj|AB157423.1| Oryza sativa (japonica cultivar-group) DNA,... 38 2.1
dbj|AB157497.1| Oryza sativa (japonica cultivar-group) DNA,... 38 2.1
dbj|AB157587.1| Oryza sativa (japonica cultivar-group) DNA,... 38 2.1
dbj|AB157628.1| Oryza sativa (japonica cultivar-group) DNA,... 38 2.1
dbj|AB157668.1| Oryza sativa (japonica cultivar-group) DNA,... 38 2.1
dbj|AB157705.1| Oryza sativa (japonica cultivar-group) DNA,... 38 2.1
dbj|AB157764.1| Oryza sativa (japonica cultivar-group) DNA,... 38 2.1
dbj|AB157771.1| Oryza sativa (japonica cultivar-group) DNA,... 38 2.1
dbj|AB158032.1| Oryza sativa (japonica cultivar-group) DNA,... 38 2.1
dbj|AG024547.2| Oryza sativa (japonica cultivar-group) DNA,... 38 2.1
dbj|AB155376.2| Oryza sativa (japonica cultivar-group) DNA,... 38 2.1
dbj|AB156990.2| Oryza sativa (japonica cultivar-group) DNA,... 38 2.1
dbj|AB157415.2| Oryza sativa (japonica cultivar-group) DNA,... 38 2.1
dbj|AB157466.2| Oryza sativa (japonica cultivar-group) DNA,... 38 2.1
dbj|AB157571.2| Oryza sativa (japonica cultivar-group) DNA,... 38 2.1
gb|DU711782.1|DU711782 LW1258_TT57-38-1 CSIROPIFGRTT_DSTDNA... 38 2.1
gb|DU711787.1|DU711787 LW1185_TT41-340-1-4 CSIROPIFGRTT_DST... 38 2.1
gb|AACV01012890.1| Oryza sativa (japonica cultivar-group) c... 38 2.1
dbj|AP002837.2| Oryza sativa (japonica cultivar-group) geno... 38 2.1
dbj|AP001389.1| Oryza sativa (japonica cultivar-group) geno... 38 2.1
ref|NT_107230.2| Oryza sativa (japonica cultivar-group) 38 2.1
gb|AQ864492.1|AQ864492 nbeb0023K07f CUGI Rice BAC Library (... 36 8.2
gb|AQ445903.2|AQ445903 nbxb0056L22f CUGI Rice BAC Library O... 36 8.2
dbj|AG208353.1| Oryza sativa (japonica cultivar-group) DNA,... 36 8.2
dbj|AG213213.1| Oryza sativa (japonica cultivar-group) DNA,... 36 8.2
dbj|AG213230.1| Oryza sativa (japonica cultivar-group) DNA,... 36 8.2
dbj|AG213596.1| Oryza sativa (japonica cultivar-group) DNA,... 36 8.2
dbj|AG214653.1| Oryza sativa (japonica cultivar-group) DNA,... 36 8.2
dbj|AG214922.1| Oryza sativa (japonica cultivar-group) DNA,... 36 8.2
dbj|AG024839.1| Oryza sativa (japonica cultivar-group) DNA,... 36 8.2
dbj|AG024869.1| Oryza sativa (japonica cultivar-group) DNA,... 36 8.2
dbj|AG025018.1| Oryza sativa (japonica cultivar-group) DNA,... 36 8.2
dbj|AG025160.1| Oryza sativa (japonica cultivar-group) DNA,... 36 8.2
dbj|AG025312.1| Oryza sativa (japonica cultivar-group) DNA,... 36 8.2
dbj|AG025396.1| Oryza sativa (japonica cultivar-group) DNA,... 36 8.2
dbj|AG205322.1| Oryza sativa (japonica cultivar-group) DNA,... 36 8.2
dbj|AB154905.1| Oryza sativa (japonica cultivar-group) DNA,... 36 8.2
dbj|AB155607.1| Oryza sativa (japonica cultivar-group) DNA,... 36 8.2
dbj|AB155730.1| Oryza sativa (japonica cultivar-group) DNA,... 36 8.2
dbj|AB155884.1| Oryza sativa (japonica cultivar-group) DNA,... 36 8.2
dbj|AB155930.1| Oryza sativa (japonica cultivar-group) DNA,... 36 8.2
dbj|AB156823.1| Oryza sativa (japonica cultivar-group) DNA,... 36 8.2
dbj|AB156853.1| Oryza sativa (japonica cultivar-group) DNA,... 36 8.2
dbj|AB157206.1| Oryza sativa (japonica cultivar-group) DNA,... 36 8.2
dbj|AB157268.1| Oryza sativa (japonica cultivar-group) DNA,... 36 8.2
dbj|AB157275.1| Oryza sativa (japonica cultivar-group) DNA,... 36 8.2
dbj|AB157293.1| Oryza sativa (japonica cultivar-group) DNA,... 36 8.2
dbj|AB157312.1| Oryza sativa (japonica cultivar-group) DNA,... 36 8.2
dbj|AB157349.1| Oryza sativa (japonica cultivar-group) DNA,... 36 8.2
dbj|AB157401.1| Oryza sativa (japonica cultivar-group) DNA,... 36 8.2
dbj|AB157472.1| Oryza sativa (japonica cultivar-group) DNA,... 36 8.2
dbj|AB157543.1| Oryza sativa (japonica cultivar-group) DNA,... 36 8.2
dbj|AB157663.1| Oryza sativa (japonica cultivar-group) DNA,... 36 8.2
dbj|AB157722.1| Oryza sativa (japonica cultivar-group) DNA,... 36 8.2
dbj|AB157724.1| Oryza sativa (japonica cultivar-group) DNA,... 36 8.2
dbj|AB157742.1| Oryza sativa (japonica cultivar-group) DNA,... 36 8.2
dbj|AB157751.1| Oryza sativa (japonica cultivar-group) DNA,... 36 8.2
dbj|AB157787.1| Oryza sativa (japonica cultivar-group) DNA,... 36 8.2
dbj|AB157054.2| Oryza sativa (japonica cultivar-group) DNA,... 36 8.2
dbj|AB157740.2| Oryza sativa (japonica cultivar-group) DNA,... 36 8.2
dbj|AB158052.2| Oryza sativa (japonica cultivar-group) DNA,... 36 8.2
gb|DU711657.1|DU711657 LW1226_TT42-25-1-4 CSIROPIFGRTT_DSTD... 36 8.2
gb|D15699.1|D15699 RICC1115A Rice callus Oryza sativa (japo... 36 8.2
gb|AU064380.2|AU064380 AU064380 Rice panicle shorter than 3... 36 8.2
gb|AU093576.1|AU093576 AU093576 Rice callus Oryza sativa (j... 36 8.2
gb|AU096266.1|AU096266 AU096266 Rice green shoot Oryza sati... 36 8.2
gb|AU096330.1|AU096330 AU096330 Rice green shoot Oryza sati... 36 8.2
gb|AU165983.1|AU165983 AU165983 Rice panicle shorter than 3... 36 8.2
gb|BF889487.1|BF889487 EST056 Subtracted cDNA library of JA... 36 8.2
gb|CB643990.1|CB643990 OSJNEb04P24.f OSJNEb Oryza sativa (j... 36 8.2
gb|CB643991.1|CB643991 OSJNEb04P24.r OSJNEb Oryza sativa (j... 36 8.2
gb|CF325511.1|CF325511 JMT1--03-G24.g1 AtJMT-overexpressing... 36 8.2
gb|CF325725.1|CF325725 JMT1--04-A05.g1 AtJMT-overexpressing... 36 8.2
gb|CF325986.1|CF325986 JMT1--04-M17.g1 AtJMT-overexpressing... 36 8.2
gb|CF326180.1|CF326180 JMT1--05-F05.g1 AtJMT-overexpressing... 36 8.2
gb|CO436037.1|CO436037 OsMR959 5MT resistant rice mutant cD... 36 8.2
dbj|AB071805.1| Oryza sativa (japonica cultivar-group) mRNA... 36 8.2
dbj|D12631.1|RICRPL7AB Oryza sativa (japonica cultivar-grou... 36 8.2
dbj|AK062210.1| Oryza sativa (japonica cultivar-group) cDNA... 36 8.2
dbj|AK098843.1| Oryza sativa (japonica cultivar-group) cDNA... 36 8.2
dbj|AK121204.1| Oryza sativa (japonica cultivar-group) cDNA... 36 8.2
dbj|AP003884.2| Oryza sativa (japonica cultivar-group) geno... 36 8.2
dbj|AP004637.3| Oryza sativa (japonica cultivar-group) geno... 36 8.2
gb|AC118981.1| Genomic sequence for Oryza sativa, Nipponbar... 36 8.2
gb|AACV01002964.1| Oryza sativa (japonica cultivar-group) c... 36 8.2
gb|AACV01006179.1| Oryza sativa (japonica cultivar-group) c... 36 8.2
gb|AACV01015308.1| Oryza sativa (japonica cultivar-group) c... 36 8.2
gb|AACV01018111.1| Oryza sativa (japonica cultivar-group) c... 36 8.2
ref|NT_080061.1| Oryza sativa (japonica cultivar-group) chr... 36 8.2
ref|XM_463662.1| Oryza sativa (japonica cultivar-group), p... 36 8.2
ref|XM_481630.1| Oryza sativa (japonica cultivar-group), mRNA 36 8.2
ref|NT_079923.2| Oryza sativa (japonica cultivar-group) 36 8.2
ref|NT_107190.1| Oryza sativa (japonica cultivar-group) 36 8.2
ref|XM_507194.2| PREDICTED Oryza sativa (japonica cultivar-... 36 8.2
ref|XM_507578.1| PREDICTED Oryza sativa (japonica cultivar-... 36 8.2
ref|NT_107239.1| Oryza sativa (japonica cultivar-group) 36 8.2
dbj|AP004223.2| Oryza sativa (japonica cultivar-group) geno... 36 8.2
dbj|AP004672.3| Oryza sativa (japonica cultivar-group) geno... 36 8.2
gb|CH401230.1| Oryza sativa (japonica cultivar-group) chrom... 36 8.2
gb|CH401220.1| Oryza sativa (japonica cultivar-group) chrom... 36 8.2
gb|CM000145.1| Oryza sativa (japonica cultivar-group) chrom... 36 8.2
gb|CM000144.1| Oryza sativa (japonica cultivar-group) chrom... 36 8.2
dbj|AP008214.1| Oryza sativa (japonica cultivar-group) geno... 36 8.2
dbj|AP008216.1| Oryza sativa (japonica cultivar-group) geno... 36 8.2
gb|AC092173.3| Oryza sativa (japonica cultivar-group) chrom... 36 8.2
gb|AE016959.3| Oryza sativa (japonica cultivar-group) chrom... 36 8.2
>ref|NT_107235.1| Oryza sativa (japonica cultivar-group)
Length = 369247
Score = 244 bits (123), Expect = 2e-062
Identities = 204/231 (88%)
Strand = Plus / Plus
Query: 17 gtactgaagtagaaaccaattgttgtgtagtaacaagacagcatcctgaagaaatcaaag 76
||||| |||||||| |||||||||||||| || || |||||||| ||||||||||||||
Sbjct: 156901 gtactaaagtagaagccaattgttgtgtaatagcatgacagcattctgaagaaatcaaac 156960
Query: 77 cgatgacctagccggtagatgtcacggctcagcgtttgttcgccattgccatttgctatc 136
|| || ||||| || || |||||||||||||| |||||||| ||||| ||||||||||||
Sbjct: 156961 cggtgccctagtcgataaatgtcacggctcagtgtttgttcaccattaccatttgctatc 157020
Query: 137 tttgcctcaaacagagatatttgattgagacctacatcccttcctttgccaacttgcatg 196
|||||||||||||||| ||||| |||||||| ||||| ||||| |||||||||||||||
Sbjct: 157021 tttgcctcaaacagagcaatttggttgagacccacatctcttcccttgccaacttgcatg 157080
Query: 197 tattcatggtgagtaacattgccttcgcgcaatgtggaattgaatcctgca 247
|| ||||| ||||| ||||||||||| |||||||| |||||||| ||||||
Sbjct: 157081 tactcatgatgagtgacattgccttcacgcaatgttgaattgaaacctgca 157131
>dbj|AP004685.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
clone:P0017G10
Length = 166700
Score = 244 bits (123), Expect = 2e-062
Identities = 204/231 (88%)
Strand = Plus / Plus
Query: 17 gtactgaagtagaaaccaattgttgtgtagtaacaagacagcatcctgaagaaatcaaag 76
||||| |||||||| |||||||||||||| || || |||||||| ||||||||||||||
Sbjct: 156901 gtactaaagtagaagccaattgttgtgtaatagcatgacagcattctgaagaaatcaaac 156960
Query: 77 cgatgacctagccggtagatgtcacggctcagcgtttgttcgccattgccatttgctatc 136
|| || ||||| || || |||||||||||||| |||||||| ||||| ||||||||||||
Sbjct: 156961 cggtgccctagtcgataaatgtcacggctcagtgtttgttcaccattaccatttgctatc 157020
Query: 137 tttgcctcaaacagagatatttgattgagacctacatcccttcctttgccaacttgcatg 196
|||||||||||||||| ||||| |||||||| ||||| ||||| |||||||||||||||
Sbjct: 157021 tttgcctcaaacagagcaatttggttgagacccacatctcttcccttgccaacttgcatg 157080
Query: 197 tattcatggtgagtaacattgccttcgcgcaatgtggaattgaatcctgca 247
|| ||||| ||||| ||||||||||| |||||||| |||||||| ||||||
Sbjct: 157081 tactcatgatgagtgacattgccttcacgcaatgttgaattgaaacctgca 157131
>dbj|AP005750.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
clone:OSJNBa0069C14
Length = 150579
Score = 244 bits (123), Expect = 2e-062
Identities = 204/231 (88%)
Strand = Plus / Plus
Query: 17 gtactgaagtagaaaccaattgttgtgtagtaacaagacagcatcctgaagaaatcaaag 76
||||| |||||||| |||||||||||||| || || |||||||| ||||||||||||||
Sbjct: 18103 gtactaaagtagaagccaattgttgtgtaatagcatgacagcattctgaagaaatcaaac 18162
Query: 77 cgatgacctagccggtagatgtcacggctcagcgtttgttcgccattgccatttgctatc 136
|| || ||||| || || |||||||||||||| |||||||| ||||| ||||||||||||
Sbjct: 18163 cggtgccctagtcgataaatgtcacggctcagtgtttgttcaccattaccatttgctatc 18222
Query: 137 tttgcctcaaacagagatatttgattgagacctacatcccttcctttgccaacttgcatg 196
|||||||||||||||| ||||| |||||||| ||||| ||||| |||||||||||||||
Sbjct: 18223 tttgcctcaaacagagcaatttggttgagacccacatctcttcccttgccaacttgcatg 18282
Query: 197 tattcatggtgagtaacattgccttcgcgcaatgtggaattgaatcctgca 247
|| ||||| ||||| ||||||||||| |||||||| |||||||| ||||||
Sbjct: 18283 tactcatgatgagtgacattgccttcacgcaatgttgaattgaaacctgca 18333
>gb|AACV01014975.1| Oryza sativa (japonica cultivar-group) chromosome 6 Ctg014975, whole
genome shotgun sequence
Length = 9397
Score = 244 bits (123), Expect = 2e-062
Identities = 204/231 (88%)
Strand = Plus / Minus
Query: 17 gtactgaagtagaaaccaattgttgtgtagtaacaagacagcatcctgaagaaatcaaag 76
||||| |||||||| |||||||||||||| || || |||||||| ||||||||||||||
Sbjct: 3616 gtactaaagtagaagccaattgttgtgtaatagcatgacagcattctgaagaaatcaaac 3557
Query: 77 cgatgacctagccggtagatgtcacggctcagcgtttgttcgccattgccatttgctatc 136
|| || ||||| || || |||||||||||||| |||||||| ||||| ||||||||||||
Sbjct: 3556 cggtgccctagtcgataaatgtcacggctcagtgtttgttcaccattaccatttgctatc 3497
Query: 137 tttgcctcaaacagagatatttgattgagacctacatcccttcctttgccaacttgcatg 196
|||||||||||||||| ||||| |||||||| ||||| ||||| |||||||||||||||
Sbjct: 3496 tttgcctcaaacagagcaatttggttgagacccacatctcttcccttgccaacttgcatg 3437
Query: 197 tattcatggtgagtaacattgccttcgcgcaatgtggaattgaatcctgca 247
|| ||||| ||||| ||||||||||| |||||||| |||||||| ||||||
Sbjct: 3436 tactcatgatgagtgacattgccttcacgcaatgttgaattgaaacctgca 3386
>gb|CH401216.1| Oryza sativa (japonica cultivar-group) chromosome 6 scaffold000053 genomic
scaffold, whole genome shotgun sequence
Length = 12033173
Score = 244 bits (123), Expect = 2e-062
Identities = 204/231 (88%)
Strand = Plus / Plus
Query: 17 gtactgaagtagaaaccaattgttgtgtagtaacaagacagcatcctgaagaaatcaaag 76
||||| |||||||| |||||||||||||| || || |||||||| ||||||||||||||
Sbjct: 11851559 gtactaaagtagaagccaattgttgtgtaatagcatgacagcattctgaagaaatcaaac 11851618
Query: 77 cgatgacctagccggtagatgtcacggctcagcgtttgttcgccattgccatttgctatc 136
|| || ||||| || || |||||||||||||| |||||||| ||||| ||||||||||||
Sbjct: 11851619 cggtgccctagtcgataaatgtcacggctcagtgtttgttcaccattaccatttgctatc 11851678
Query: 137 tttgcctcaaacagagatatttgattgagacctacatcccttcctttgccaacttgcatg 196
|||||||||||||||| ||||| |||||||| ||||| ||||| |||||||||||||||
Sbjct: 11851679 tttgcctcaaacagagcaatttggttgagacccacatctcttcccttgccaacttgcatg 11851738
Query: 197 tattcatggtgagtaacattgccttcgcgcaatgtggaattgaatcctgca 247
|| ||||| ||||| ||||||||||| |||||||| |||||||| ||||||
Sbjct: 11851739 tactcatgatgagtgacattgccttcacgcaatgttgaattgaaacctgca 11851789
>gb|CM000143.1| Oryza sativa (japonica cultivar-group) chromosome 6, whole genome shotgun
sequence
Length = 29740507
Score = 244 bits (123), Expect = 2e-062
Identities = 204/231 (88%)
Strand = Plus / Plus
Query: 17 gtactgaagtagaaaccaattgttgtgtagtaacaagacagcatcctgaagaaatcaaag 76
||||| |||||||| |||||||||||||| || || |||||||| ||||||||||||||
Sbjct: 29550296 gtactaaagtagaagccaattgttgtgtaatagcatgacagcattctgaagaaatcaaac 29550355
Query: 77 cgatgacctagccggtagatgtcacggctcagcgtttgttcgccattgccatttgctatc 136
|| || ||||| || || |||||||||||||| |||||||| ||||| ||||||||||||
Sbjct: 29550356 cggtgccctagtcgataaatgtcacggctcagtgtttgttcaccattaccatttgctatc 29550415
Query: 137 tttgcctcaaacagagatatttgattgagacctacatcccttcctttgccaacttgcatg 196
|||||||||||||||| ||||| |||||||| ||||| ||||| |||||||||||||||
Sbjct: 29550416 tttgcctcaaacagagcaatttggttgagacccacatctcttcccttgccaacttgcatg 29550475
Query: 197 tattcatggtgagtaacattgccttcgcgcaatgtggaattgaatcctgca 247
|| ||||| ||||| ||||||||||| |||||||| |||||||| ||||||
Sbjct: 29550476 tactcatgatgagtgacattgccttcacgcaatgttgaattgaaacctgca 29550526
Score = 79.8 bits (40), Expect = 6e-013
Identities = 133/164 (81%)
Strand = Plus / Plus
Query: 53 gacagcatcctgaagaaatcaaagcgatgacctagccggtagatgtcacggctcagcgtt 112
|||||||||| ||| || |||||||| ||||| | || |||||||| | ||| || |||
Sbjct: 3913660 gacagcatccggaaaaagtcaaagcggtgacccaagcgatagatgtctctgctgagtgtt 3913719
Query: 113 tgttcgccattgccatttgctatctttgcctcaaacagagatatttgattgagacctaca 172
|| || ||||| ||| ||| | || || ||||| ||||| |||||||| ||||| |||
Sbjct: 3913720 tgctctccattaccacatgccactttagcttcaaagagagaaatttgattaagaccaaca 3913779
Query: 173 tcccttcctttgccaacttgcatgtattcatggtgagtaacatt 216
|| | ||||||||||||||| |||||||||||||| || |||||
Sbjct: 3913780 tctcgtcctttgccaacttgaatgtattcatggtgggtgacatt 3913823
Score = 38.2 bits (19), Expect = 2.1
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 24 agtagaaaccaattgttgt 42
|||||||||||||||||||
Sbjct: 721419 agtagaaaccaattgttgt 721437
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
sequence
Length = 30731886
Score = 244 bits (123), Expect = 2e-062
Identities = 204/231 (88%)
Strand = Plus / Plus
Query: 17 gtactgaagtagaaaccaattgttgtgtagtaacaagacagcatcctgaagaaatcaaag 76
||||| |||||||| |||||||||||||| || || |||||||| ||||||||||||||
Sbjct: 30519540 gtactaaagtagaagccaattgttgtgtaatagcatgacagcattctgaagaaatcaaac 30519599
Query: 77 cgatgacctagccggtagatgtcacggctcagcgtttgttcgccattgccatttgctatc 136
|| || ||||| || || |||||||||||||| |||||||| ||||| ||||||||||||
Sbjct: 30519600 cggtgccctagtcgataaatgtcacggctcagtgtttgttcaccattaccatttgctatc 30519659
Query: 137 tttgcctcaaacagagatatttgattgagacctacatcccttcctttgccaacttgcatg 196
|||||||||||||||| ||||| |||||||| ||||| ||||| |||||||||||||||
Sbjct: 30519660 tttgcctcaaacagagcaatttggttgagacccacatctcttcccttgccaacttgcatg 30519719
Query: 197 tattcatggtgagtaacattgccttcgcgcaatgtggaattgaatcctgca 247
|| ||||| ||||| ||||||||||| |||||||| |||||||| ||||||
Sbjct: 30519720 tactcatgatgagtgacattgccttcacgcaatgttgaattgaaacctgca 30519770
Score = 79.8 bits (40), Expect = 6e-013
Identities = 133/164 (81%)
Strand = Plus / Plus
Query: 53 gacagcatcctgaagaaatcaaagcgatgacctagccggtagatgtcacggctcagcgtt 112
|||||||||| ||| || |||||||| ||||| | || |||||||| | ||| || |||
Sbjct: 4081081 gacagcatccggaaaaagtcaaagcggtgacccaagcgatagatgtctctgctgagtgtt 4081140
Query: 113 tgttcgccattgccatttgctatctttgcctcaaacagagatatttgattgagacctaca 172
|| || ||||| ||| ||| | || || ||||| ||||| |||||||| ||||| |||
Sbjct: 4081141 tgctctccattaccacatgccactttagcttcaaagagagaaatttgattaagaccaaca 4081200
Query: 173 tcccttcctttgccaacttgcatgtattcatggtgagtaacatt 216
|| | ||||||||||||||| |||||||||||||| || |||||
Sbjct: 4081201 tctcgtcctttgccaacttgaatgtattcatggtgggtgacatt 4081244
Score = 38.2 bits (19), Expect = 2.1
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 24 agtagaaaccaattgttgt 42
|||||||||||||||||||
Sbjct: 821787 agtagaaaccaattgttgt 821805
>dbj|AP004082.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
clone:OJ1149_C12
Length = 120743
Score = 186 bits (94), Expect = 4e-045
Identities = 193/226 (85%)
Strand = Plus / Minus
Query: 20 ctgaagtagaaaccaattgttgtgtagtaacaagacagcatcctgaagaaatcaaagcga 79
|||||||| |||||||| || |||||||| || |||| ||| |||||||||||||| |||
Sbjct: 91505 ctgaagtaaaaaccaatagtggtgtagtagcaggacaacattctgaagaaatcaaaacga 91446
Query: 80 tgacctagccggtagatgtcacggctcagcgtttgttcgccattgccatttgctatcttt 139
|| || || ||||||| |||||||||||| || || || ||||| ||||| ||||| |||
Sbjct: 91445 tgtccaagtcggtagacgtcacggctcagtgtctgctctccattaccattagctattttt 91386
Query: 140 gcctcaaacagagatatttgattgagacctacatcccttcctttgccaacttgcatgtat 199
|||||||| || || |||||||||||||| ||||| || || ||||||||||||||||||
Sbjct: 91385 gcctcaaatagtgagatttgattgagacccacatctctccccttgccaacttgcatgtat 91326
Query: 200 tcatggtgagtaacattgccttcgcgcaatgtggaattgaatcctg 245
||||| || |||||||| ||||| |||| ||| || ||||||||||
Sbjct: 91325 tcatgatgcgtaacatttccttcacgcagtgttgagttgaatcctg 91280
>dbj|AP005290.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
clone:OJ1282_E10
Length = 107284
Score = 186 bits (94), Expect = 4e-045
Identities = 193/226 (85%)
Strand = Plus / Minus
Query: 20 ctgaagtagaaaccaattgttgtgtagtaacaagacagcatcctgaagaaatcaaagcga 79
|||||||| |||||||| || |||||||| || |||| ||| |||||||||||||| |||
Sbjct: 11336 ctgaagtaaaaaccaatagtggtgtagtagcaggacaacattctgaagaaatcaaaacga 11277
Query: 80 tgacctagccggtagatgtcacggctcagcgtttgttcgccattgccatttgctatcttt 139
|| || || ||||||| |||||||||||| || || || ||||| ||||| ||||| |||
Sbjct: 11276 tgtccaagtcggtagacgtcacggctcagtgtctgctctccattaccattagctattttt 11217
Query: 140 gcctcaaacagagatatttgattgagacctacatcccttcctttgccaacttgcatgtat 199
|||||||| || || |||||||||||||| ||||| || || ||||||||||||||||||
Sbjct: 11216 gcctcaaatagtgagatttgattgagacccacatctctccccttgccaacttgcatgtat 11157
Query: 200 tcatggtgagtaacattgccttcgcgcaatgtggaattgaatcctg 245
||||| || |||||||| ||||| |||| ||| || ||||||||||
Sbjct: 11156 tcatgatgcgtaacatttccttcacgcagtgttgagttgaatcctg 11111
>gb|AACV01005686.1| Oryza sativa (japonica cultivar-group) chromosome 2 Ctg005686, whole
genome shotgun sequence
Length = 38041
Score = 186 bits (94), Expect = 4e-045
Identities = 193/226 (85%)
Strand = Plus / Minus
Query: 20 ctgaagtagaaaccaattgttgtgtagtaacaagacagcatcctgaagaaatcaaagcga 79
|||||||| |||||||| || |||||||| || |||| ||| |||||||||||||| |||
Sbjct: 5860 ctgaagtaaaaaccaatagtggtgtagtagcaggacaacattctgaagaaatcaaaacga 5801
Query: 80 tgacctagccggtagatgtcacggctcagcgtttgttcgccattgccatttgctatcttt 139
|| || || ||||||| |||||||||||| || || || ||||| ||||| ||||| |||
Sbjct: 5800 tgtccaagtcggtagacgtcacggctcagtgtctgctctccattaccattagctattttt 5741
Query: 140 gcctcaaacagagatatttgattgagacctacatcccttcctttgccaacttgcatgtat 199
|||||||| || || |||||||||||||| ||||| || || ||||||||||||||||||
Sbjct: 5740 gcctcaaatagtgagatttgattgagacccacatctctccccttgccaacttgcatgtat 5681
Query: 200 tcatggtgagtaacattgccttcgcgcaatgtggaattgaatcctg 245
||||| || |||||||| ||||| |||| ||| || ||||||||||
Sbjct: 5680 tcatgatgcgtaacatttccttcacgcagtgttgagttgaatcctg 5635
>ref|NT_107182.1| Oryza sativa (japonica cultivar-group)
Length = 1785023
Score = 186 bits (94), Expect = 4e-045
Identities = 193/226 (85%)
Strand = Plus / Minus
Query: 20 ctgaagtagaaaccaattgttgtgtagtaacaagacagcatcctgaagaaatcaaagcga 79
|||||||| |||||||| || |||||||| || |||| ||| |||||||||||||| |||
Sbjct: 1656063 ctgaagtaaaaaccaatagtggtgtagtagcaggacaacattctgaagaaatcaaaacga 1656004
Query: 80 tgacctagccggtagatgtcacggctcagcgtttgttcgccattgccatttgctatcttt 139
|| || || ||||||| |||||||||||| || || || ||||| ||||| ||||| |||
Sbjct: 1656003 tgtccaagtcggtagacgtcacggctcagtgtctgctctccattaccattagctattttt 1655944
Query: 140 gcctcaaacagagatatttgattgagacctacatcccttcctttgccaacttgcatgtat 199
|||||||| || || |||||||||||||| ||||| || || ||||||||||||||||||
Sbjct: 1655943 gcctcaaatagtgagatttgattgagacccacatctctccccttgccaacttgcatgtat 1655884
Query: 200 tcatggtgagtaacattgccttcgcgcaatgtggaattgaatcctg 245
||||| || |||||||| ||||| |||| ||| || ||||||||||
Sbjct: 1655883 tcatgatgcgtaacatttccttcacgcagtgttgagttgaatcctg 1655838
>gb|CH401170.1| Oryza sativa (japonica cultivar-group) chromosome 2 scaffold000007 genomic
scaffold, whole genome shotgun sequence
Length = 22563205
Score = 186 bits (94), Expect = 4e-045
Identities = 193/226 (85%)
Strand = Plus / Minus
Query: 20 ctgaagtagaaaccaattgttgtgtagtaacaagacagcatcctgaagaaatcaaagcga 79
|||||||| |||||||| || |||||||| || |||| ||| |||||||||||||| |||
Sbjct: 22449969 ctgaagtaaaaaccaatagtggtgtagtagcaggacaacattctgaagaaatcaaaacga 22449910
Query: 80 tgacctagccggtagatgtcacggctcagcgtttgttcgccattgccatttgctatcttt 139
|| || || ||||||| |||||||||||| || || || ||||| ||||| ||||| |||
Sbjct: 22449909 tgtccaagtcggtagacgtcacggctcagtgtctgctctccattaccattagctattttt 22449850
Query: 140 gcctcaaacagagatatttgattgagacctacatcccttcctttgccaacttgcatgtat 199
|||||||| || || |||||||||||||| ||||| || || ||||||||||||||||||
Sbjct: 22449849 gcctcaaatagtgagatttgattgagacccacatctctccccttgccaacttgcatgtat 22449790
Query: 200 tcatggtgagtaacattgccttcgcgcaatgtggaattgaatcctg 245
||||| || |||||||| ||||| |||| ||| || ||||||||||
Sbjct: 22449789 tcatgatgcgtaacatttccttcacgcagtgttgagttgaatcctg 22449744
>gb|CM000139.1| Oryza sativa (japonica cultivar-group) chromosome 2, whole genome shotgun
sequence
Length = 36016269
Score = 186 bits (94), Expect = 4e-045
Identities = 193/226 (85%)
Strand = Plus / Minus
Query: 20 ctgaagtagaaaccaattgttgtgtagtaacaagacagcatcctgaagaaatcaaagcga 79
|||||||| |||||||| || |||||||| || |||| ||| |||||||||||||| |||
Sbjct: 35903033 ctgaagtaaaaaccaatagtggtgtagtagcaggacaacattctgaagaaatcaaaacga 35902974
Query: 80 tgacctagccggtagatgtcacggctcagcgtttgttcgccattgccatttgctatcttt 139
|| || || ||||||| |||||||||||| || || || ||||| ||||| ||||| |||
Sbjct: 35902973 tgtccaagtcggtagacgtcacggctcagtgtctgctctccattaccattagctattttt 35902914
Query: 140 gcctcaaacagagatatttgattgagacctacatcccttcctttgccaacttgcatgtat 199
|||||||| || || |||||||||||||| ||||| || || ||||||||||||||||||
Sbjct: 35902913 gcctcaaatagtgagatttgattgagacccacatctctccccttgccaacttgcatgtat 35902854
Query: 200 tcatggtgagtaacattgccttcgcgcaatgtggaattgaatcctg 245
||||| || |||||||| ||||| |||| ||| || ||||||||||
Sbjct: 35902853 tcatgatgcgtaacatttccttcacgcagtgttgagttgaatcctg 35902808
Score = 77.8 bits (39), Expect = 2e-012
Identities = 135/167 (80%)
Strand = Plus / Minus
Query: 37 tgttgtgtagtaacaagacagcatcctgaagaaatcaaagcgatgacctagccggtagat 96
||||||| | |||||||| ||||||||||| ||||||||||| | |||||||| | |||
Sbjct: 8446515 tgttgtgaaataacaagagagcatcctgaaaaaatcaaagcgtcgccctagccgatggat 8446456
Query: 97 gtcacggctcagcgtttgttcgccattgccatttgctatctttgcctcaaacagagatat 156
|||||||| || |||||||| | ||| |||||||| | || || ||||| |||||
Sbjct: 8446455 atcacggctaagagtttgttcactattcccatttgcaactttagcttcaaattttgatat 8446396
Query: 157 ttgattgagacctacatcccttcctttgccaacttgcatgtattcat 203
||||| ||||| ||||| | |||||||||||||| ||||| ||||
Sbjct: 8446395 ctgattaagaccaacatcacgccctttgccaacttgaatgtactcat 8446349
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
sequence
Length = 35954743
Score = 186 bits (94), Expect = 4e-045
Identities = 193/226 (85%)
Strand = Plus / Minus
Query: 20 ctgaagtagaaaccaattgttgtgtagtaacaagacagcatcctgaagaaatcaaagcga 79
|||||||| |||||||| || |||||||| || |||| ||| |||||||||||||| |||
Sbjct: 35820790 ctgaagtaaaaaccaatagtggtgtagtagcaggacaacattctgaagaaatcaaaacga 35820731
Query: 80 tgacctagccggtagatgtcacggctcagcgtttgttcgccattgccatttgctatcttt 139
|| || || ||||||| |||||||||||| || || || ||||| ||||| ||||| |||
Sbjct: 35820730 tgtccaagtcggtagacgtcacggctcagtgtctgctctccattaccattagctattttt 35820671
Query: 140 gcctcaaacagagatatttgattgagacctacatcccttcctttgccaacttgcatgtat 199
|||||||| || || |||||||||||||| ||||| || || ||||||||||||||||||
Sbjct: 35820670 gcctcaaatagtgagatttgattgagacccacatctctccccttgccaacttgcatgtat 35820611
Query: 200 tcatggtgagtaacattgccttcgcgcaatgtggaattgaatcctg 245
||||| || |||||||| ||||| |||| ||| || ||||||||||
Sbjct: 35820610 tcatgatgcgtaacatttccttcacgcagtgttgagttgaatcctg 35820565
Score = 77.8 bits (39), Expect = 2e-012
Identities = 135/167 (80%)
Strand = Plus / Minus
Query: 37 tgttgtgtagtaacaagacagcatcctgaagaaatcaaagcgatgacctagccggtagat 96
||||||| | |||||||| ||||||||||| ||||||||||| | |||||||| | |||
Sbjct: 8313176 tgttgtgaaataacaagagagcatcctgaaaaaatcaaagcgtcgccctagccgatggat 8313117
Query: 97 gtcacggctcagcgtttgttcgccattgccatttgctatctttgcctcaaacagagatat 156
|||||||| || |||||||| | ||| |||||||| | || || ||||| |||||
Sbjct: 8313116 atcacggctaagagtttgttcactattcccatttgcaactttagcttcaaattttgatat 8313057
Query: 157 ttgattgagacctacatcccttcctttgccaacttgcatgtattcat 203
||||| ||||| ||||| | |||||||||||||| ||||| ||||
Sbjct: 8313056 ctgattaagaccaacatcacgccctttgccaacttgaatgtactcat 8313010
>gb|CB659583.1|CB659583 OSJNEc16L01.f OSJNEc Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEc16L01 5', mRNA sequence
Length = 827
Score = 182 bits (92), Expect = 6e-044
Identities = 191/224 (85%)
Strand = Plus / Minus
Query: 20 ctgaagtagaaaccaattgttgtgtagtaacaagacagcatcctgaagaaatcaaagcga 79
|||||||| |||||||| || |||||||| || |||| ||| |||||||||||||| |||
Sbjct: 226 ctgaagtaaaaaccaatagtggtgtagtagcaggacaacattctgaagaaatcaaaacga 167
Query: 80 tgacctagccggtagatgtcacggctcagcgtttgttcgccattgccatttgctatcttt 139
|| || || ||||||| |||||||||||| || || || ||||| ||||| ||||| |||
Sbjct: 166 tgtccaagtcggtagacgtcacggctcagtgtctgctctccattaccattagctattttt 107
Query: 140 gcctcaaacagagatatttgattgagacctacatcccttcctttgccaacttgcatgtat 199
|||||||| || || |||||||||||||| ||||| || || ||||||||||||||||||
Sbjct: 106 gcctcaaatagtgagatttgattgagacccacatctctccccttgccaacttgcatgtat 47
Query: 200 tcatggtgagtaacattgccttcgcgcaatgtggaattgaatcc 243
||||| || |||||||| ||||| |||| ||| || ||||||||
Sbjct: 46 tcatgatgcgtaacatttccttcacgcagtgttgagttgaatcc 3
>gb|AY324384.1| Oryza sativa (japonica cultivar-group) callose synthase-like protein
mRNA, partial cds
Length = 2727
Score = 182 bits (92), Expect = 6e-044
Identities = 191/224 (85%)
Strand = Plus / Minus
Query: 20 ctgaagtagaaaccaattgttgtgtagtaacaagacagcatcctgaagaaatcaaagcga 79
|||||||| |||||||| || |||||||| || |||| ||| |||||||||||||| |||
Sbjct: 1436 ctgaagtaaaaaccaatagtggtgtagtagcaggacaacattctgaagaaatcaaaacga 1377
Query: 80 tgacctagccggtagatgtcacggctcagcgtttgttcgccattgccatttgctatcttt 139
|| || || ||||||| |||||||||||| || || || ||||| ||||| ||||| |||
Sbjct: 1376 tgtccaagtcggtagacgtcacggctcagtgtctgctctccattaccattagctattttt 1317
Query: 140 gcctcaaacagagatatttgattgagacctacatcccttcctttgccaacttgcatgtat 199
|||||||| || || |||||||||||||| ||||| || || ||||||||||||||||||
Sbjct: 1316 gcctcaaatagtgagatttgattgagacccacatctctccccttgccaacttgcatgtat 1257
Query: 200 tcatggtgagtaacattgccttcgcgcaatgtggaattgaatcc 243
||||| || |||||||| ||||| |||| ||| || ||||||||
Sbjct: 1256 tcatgatgcgtaacatttccttcacgcagtgttgagttgaatcc 1213
>ref|XM_468556.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 5910
Score = 182 bits (92), Expect = 6e-044
Identities = 191/224 (85%)
Strand = Plus / Minus
Query: 20 ctgaagtagaaaccaattgttgtgtagtaacaagacagcatcctgaagaaatcaaagcga 79
|||||||| |||||||| || |||||||| || |||| ||| |||||||||||||| |||
Sbjct: 4619 ctgaagtaaaaaccaatagtggtgtagtagcaggacaacattctgaagaaatcaaaacga 4560
Query: 80 tgacctagccggtagatgtcacggctcagcgtttgttcgccattgccatttgctatcttt 139
|| || || ||||||| |||||||||||| || || || ||||| ||||| ||||| |||
Sbjct: 4559 tgtccaagtcggtagacgtcacggctcagtgtctgctctccattaccattagctattttt 4500
Query: 140 gcctcaaacagagatatttgattgagacctacatcccttcctttgccaacttgcatgtat 199
|||||||| || || |||||||||||||| ||||| || || ||||||||||||||||||
Sbjct: 4499 gcctcaaatagtgagatttgattgagacccacatctctccccttgccaacttgcatgtat 4440
Query: 200 tcatggtgagtaacattgccttcgcgcaatgtggaattgaatcc 243
||||| || |||||||| ||||| |||| ||| || ||||||||
Sbjct: 4439 tcatgatgcgtaacatttccttcacgcagtgttgagttgaatcc 4396
>dbj|AG208568.1| Oryza sativa (japonica cultivar-group) DNA, clone:NE3534_0_403_1A,
3' flanking sequence of Tos17 insertion in rice strain
NE3534, genomic survey sequence
Length = 505
Score = 79.8 bits (40), Expect = 6e-013
Identities = 133/164 (81%)
Strand = Plus / Plus
Query: 53 gacagcatcctgaagaaatcaaagcgatgacctagccggtagatgtcacggctcagcgtt 112
|||||||||| ||| || |||||||| ||||| | || |||||||| | ||| || |||
Sbjct: 61 gacagcatccggaaaaagtcaaagcggtgacccaagcgatagatgtctctgctgagtgtt 120
Query: 113 tgttcgccattgccatttgctatctttgcctcaaacagagatatttgattgagacctaca 172
|| || ||||| ||| ||| | || || ||||| ||||| |||||||| ||||| |||
Sbjct: 121 tgctctccattaccacatgccactttagcttcaaagagagaaatttgattaagaccaaca 180
Query: 173 tcccttcctttgccaacttgcatgtattcatggtgagtaacatt 216
|| | ||||||||||||||| |||||||||||||| || |||||
Sbjct: 181 tctcgtcctttgccaacttgaatgtattcatggtgggtgacatt 224
>dbj|AG208570.1| Oryza sativa (japonica cultivar-group) DNA, clone:NE3516_0_402_1A,
3' flanking sequence of Tos17 insertion in rice strain
NE3516, genomic survey sequence
Length = 505
Score = 79.8 bits (40), Expect = 6e-013
Identities = 133/164 (81%)
Strand = Plus / Plus
Query: 53 gacagcatcctgaagaaatcaaagcgatgacctagccggtagatgtcacggctcagcgtt 112
|||||||||| ||| || |||||||| ||||| | || |||||||| | ||| || |||
Sbjct: 61 gacagcatccggaaaaagtcaaagcggtgacccaagcgatagatgtctctgctgagtgtt 120
Query: 113 tgttcgccattgccatttgctatctttgcctcaaacagagatatttgattgagacctaca 172
|| || ||||| ||| ||| | || || ||||| ||||| |||||||| ||||| |||
Sbjct: 121 tgctctccattaccacatgccactttagcttcaaagagagaaatttgattaagaccaaca 180
Query: 173 tcccttcctttgccaacttgcatgtattcatggtgagtaacatt 216
|| | ||||||||||||||| |||||||||||||| || |||||
Sbjct: 181 tctcgtcctttgccaacttgaatgtattcatggtgggtgacatt 224
>dbj|AG206877.1| Oryza sativa (japonica cultivar-group) DNA, clone:ND6041_0_104_1A,
3' flanking sequence of Tos17 insertion in rice strain
ND6041, genomic survey sequence
Length = 307
Score = 79.8 bits (40), Expect = 6e-013
Identities = 133/164 (81%)
Strand = Plus / Plus
Query: 53 gacagcatcctgaagaaatcaaagcgatgacctagccggtagatgtcacggctcagcgtt 112
|||||||||| ||| || |||||||| ||||| | || |||||||| | ||| || |||
Sbjct: 120 gacagcatccggaaaaagtcaaagcggtgacccaagcgatagatgtctctgctgagtgtt 179
Query: 113 tgttcgccattgccatttgctatctttgcctcaaacagagatatttgattgagacctaca 172
|| || ||||| ||| ||| | || || ||||| ||||| |||||||| ||||| |||
Sbjct: 180 tgctctccattaccacatgccactttagcttcaaagagagaaatttgattaagaccaaca 239
Query: 173 tcccttcctttgccaacttgcatgtattcatggtgagtaacatt 216
|| | ||||||||||||||| |||||||||||||| || |||||
Sbjct: 240 tctcgtcctttgccaacttgaatgtattcatggtgggtgacatt 283
>dbj|AP003454.1| Oryza sativa (japonica cultivar-group) chromosome 6 clone P0499E08, ***
SEQUENCING IN PROGRESS ***
Length = 85150
Score = 79.8 bits (40), Expect = 6e-013
Identities = 133/164 (81%)
Strand = Plus / Plus
Query: 53 gacagcatcctgaagaaatcaaagcgatgacctagccggtagatgtcacggctcagcgtt 112
|||||||||| ||| || |||||||| ||||| | || |||||||| | ||| || |||
Sbjct: 41871 gacagcatccggaaaaagtcaaagcggtgacccaagcgatagatgtctctgctgagtgtt 41930
Query: 113 tgttcgccattgccatttgctatctttgcctcaaacagagatatttgattgagacctaca 172
|| || ||||| ||| ||| | || || ||||| ||||| |||||||| ||||| |||
Sbjct: 41931 tgctctccattaccacatgccactttagcttcaaagagagaaatttgattaagaccaaca 41990
Query: 173 tcccttcctttgccaacttgcatgtattcatggtgagtaacatt 216
|| | ||||||||||||||| |||||||||||||| || |||||
Sbjct: 41991 tctcgtcctttgccaacttgaatgtattcatggtgggtgacatt 42034
>dbj|AK100271.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023069L11, full
insert sequence
Length = 2442
Score = 79.8 bits (40), Expect = 6e-013
Identities = 133/164 (81%)
Strand = Plus / Minus
Query: 53 gacagcatcctgaagaaatcaaagcgatgacctagccggtagatgtcacggctcagcgtt 112
|||||||||| ||| || |||||||| ||||| | || |||||||| | ||| || |||
Sbjct: 2032 gacagcatccggaaaaagtcaaagcggtgacccaagcgatagatgtctctgctgagtgtt 1973
Query: 113 tgttcgccattgccatttgctatctttgcctcaaacagagatatttgattgagacctaca 172
|| || ||||| ||| ||| | || || ||||| ||||| |||||||| ||||| |||
Sbjct: 1972 tgctctccattaccacatgccactttagcttcaaagagagaaatttgattaagaccaaca 1913
Query: 173 tcccttcctttgccaacttgcatgtattcatggtgagtaacatt 216
|| | ||||||||||||||| |||||||||||||| || |||||
Sbjct: 1912 tctcgtcctttgccaacttgaatgtattcatggtgggtgacatt 1869
>gb|AACV01013162.1| Oryza sativa (japonica cultivar-group) chromosome 6 Ctg013162, whole
genome shotgun sequence
Length = 37554
Score = 79.8 bits (40), Expect = 6e-013
Identities = 133/164 (81%)
Strand = Plus / Minus
Query: 53 gacagcatcctgaagaaatcaaagcgatgacctagccggtagatgtcacggctcagcgtt 112
|||||||||| ||| || |||||||| ||||| | || |||||||| | ||| || |||
Sbjct: 35987 gacagcatccggaaaaagtcaaagcggtgacccaagcgatagatgtctctgctgagtgtt 35928
Query: 113 tgttcgccattgccatttgctatctttgcctcaaacagagatatttgattgagacctaca 172
|| || ||||| ||| ||| | || || ||||| ||||| |||||||| ||||| |||
Sbjct: 35927 tgctctccattaccacatgccactttagcttcaaagagagaaatttgattaagaccaaca 35868
Query: 173 tcccttcctttgccaacttgcatgtattcatggtgagtaacatt 216
|| | ||||||||||||||| |||||||||||||| || |||||
Sbjct: 35867 tctcgtcctttgccaacttgaatgtattcatggtgggtgacatt 35824
>dbj|AP007226.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
clone:OSJNBb0036B04
Length = 136159
Score = 79.8 bits (40), Expect = 6e-013
Identities = 133/164 (81%)
Strand = Plus / Plus
Query: 53 gacagcatcctgaagaaatcaaagcgatgacctagccggtagatgtcacggctcagcgtt 112
|||||||||| ||| || |||||||| ||||| | || |||||||| | ||| || |||
Sbjct: 14340 gacagcatccggaaaaagtcaaagcggtgacccaagcgatagatgtctctgctgagtgtt 14399
Query: 113 tgttcgccattgccatttgctatctttgcctcaaacagagatatttgattgagacctaca 172
|| || ||||| ||| ||| | || || ||||| ||||| |||||||| ||||| |||
Sbjct: 14400 tgctctccattaccacatgccactttagcttcaaagagagaaatttgattaagaccaaca 14459
Query: 173 tcccttcctttgccaacttgcatgtattcatggtgagtaacatt 216
|| | ||||||||||||||| |||||||||||||| || |||||
Sbjct: 14460 tctcgtcctttgccaacttgaatgtattcatggtgggtgacatt 14503
>dbj|AP007257.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
clone:OSJNBb0019L07
Length = 131650
Score = 79.8 bits (40), Expect = 6e-013
Identities = 133/164 (81%)
Strand = Plus / Plus
Query: 53 gacagcatcctgaagaaatcaaagcgatgacctagccggtagatgtcacggctcagcgtt 112
|||||||||| ||| || |||||||| ||||| | || |||||||| | ||| || |||
Sbjct: 124734 gacagcatccggaaaaagtcaaagcggtgacccaagcgatagatgtctctgctgagtgtt 124793
Query: 113 tgttcgccattgccatttgctatctttgcctcaaacagagatatttgattgagacctaca 172
|| || ||||| ||| ||| | || || ||||| ||||| |||||||| ||||| |||
Sbjct: 124794 tgctctccattaccacatgccactttagcttcaaagagagaaatttgattaagaccaaca 124853
Query: 173 tcccttcctttgccaacttgcatgtattcatggtgagtaacatt 216
|| | ||||||||||||||| |||||||||||||| || |||||
Sbjct: 124854 tctcgtcctttgccaacttgaatgtattcatggtgggtgacatt 124897
>gb|CH401209.1| Oryza sativa (japonica cultivar-group) chromosome 6 scaffold000046 genomic
scaffold, whole genome shotgun sequence
Length = 8607552
Score = 79.8 bits (40), Expect = 6e-013
Identities = 133/164 (81%)
Strand = Plus / Plus
Query: 53 gacagcatcctgaagaaatcaaagcgatgacctagccggtagatgtcacggctcagcgtt 112
|||||||||| ||| || |||||||| ||||| | || |||||||| | ||| || |||
Sbjct: 3913660 gacagcatccggaaaaagtcaaagcggtgacccaagcgatagatgtctctgctgagtgtt 3913719
Query: 113 tgttcgccattgccatttgctatctttgcctcaaacagagatatttgattgagacctaca 172
|| || ||||| ||| ||| | || || ||||| ||||| |||||||| ||||| |||
Sbjct: 3913720 tgctctccattaccacatgccactttagcttcaaagagagaaatttgattaagaccaaca 3913779
Query: 173 tcccttcctttgccaacttgcatgtattcatggtgagtaacatt 216
|| | ||||||||||||||| |||||||||||||| || |||||
Sbjct: 3913780 tctcgtcctttgccaacttgaatgtattcatggtgggtgacatt 3913823
Score = 38.2 bits (19), Expect = 2.1
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 24 agtagaaaccaattgttgt 42
|||||||||||||||||||
Sbjct: 721419 agtagaaaccaattgttgt 721437
>gb|AQ272832.1|AQ272832 nbxb0028B24r CUGI Rice BAC Library Oryza sativa (japonica
cultivar-group) genomic clone nbxb0028B24r, DNA sequence
Length = 726
Score = 77.8 bits (39), Expect = 2e-012
Identities = 135/167 (80%)
Strand = Plus / Plus
Query: 37 tgttgtgtagtaacaagacagcatcctgaagaaatcaaagcgatgacctagccggtagat 96
||||||| | |||||||| ||||||||||| ||||||||||| | |||||||| | |||
Sbjct: 108 tgttgtgaaataacaagagagcatcctgaaaaaatcaaagcgtcgccctagccgatggat 167
Query: 97 gtcacggctcagcgtttgttcgccattgccatttgctatctttgcctcaaacagagatat 156
|||||||| || |||||||| | ||| |||||||| | || || ||||| |||||
Sbjct: 168 atcacggctaagagtttgttcactattcccatttgcaactttagcttcaaattttgatat 227
Query: 157 ttgattgagacctacatcccttcctttgccaacttgcatgtattcat 203
||||| ||||| ||||| | |||||||||||||| ||||| ||||
Sbjct: 228 ctgattaagaccaacatcacgccctttgccaacttgaatgtactcat 274
>gb|AQ687725.1|AQ687725 nbxb0075F07f CUGI Rice BAC Library Oryza sativa (japonica
cultivar-group) genomic clone nbxb0075F07f, DNA sequence
Length = 817
Score = 77.8 bits (39), Expect = 2e-012
Identities = 135/167 (80%)
Strand = Plus / Plus
Query: 37 tgttgtgtagtaacaagacagcatcctgaagaaatcaaagcgatgacctagccggtagat 96
||||||| | |||||||| ||||||||||| ||||||||||| | |||||||| | |||
Sbjct: 112 tgttgtgaaataacaagagagcatcctgaaaaaatcaaagcgtcgccctagccgatggat 171
Query: 97 gtcacggctcagcgtttgttcgccattgccatttgctatctttgcctcaaacagagatat 156
|||||||| || |||||||| | ||| |||||||| | || || ||||| |||||
Sbjct: 172 atcacggctaagagtttgttcactattcccatttgcaactttagcttcaaattttgatat 231
Query: 157 ttgattgagacctacatcccttcctttgccaacttgcatgtattcat 203
||||| ||||| ||||| | |||||||||||||| ||||| ||||
Sbjct: 232 ctgattaagaccaacatcacgccctttgccaacttgaatgtactcat 278
>gb|AQ840847.1|AQ840847 nbxb0071P12r CUGI Rice BAC Library Oryza sativa (japonica
cultivar-group) genomic clone nbxb0071P12r, DNA sequence
Length = 843
Score = 77.8 bits (39), Expect = 2e-012
Identities = 135/167 (80%)
Strand = Plus / Plus
Query: 37 tgttgtgtagtaacaagacagcatcctgaagaaatcaaagcgatgacctagccggtagat 96
||||||| | |||||||| ||||||||||| ||||||||||| | |||||||| | |||
Sbjct: 113 tgttgtgaaataacaagagagcatcctgaaaaaatcaaagcgtcgccctagccgatggat 172
Query: 97 gtcacggctcagcgtttgttcgccattgccatttgctatctttgcctcaaacagagatat 156
|||||||| || |||||||| | ||| |||||||| | || || ||||| |||||
Sbjct: 173 atcacggctaagagtttgttcactattcccatttgcaactttagcttcaaattttgatat 232
Query: 157 ttgattgagacctacatcccttcctttgccaacttgcatgtattcat 203
||||| ||||| ||||| | |||||||||||||| ||||| ||||
Sbjct: 233 ctgattaagaccaacatcacgccctttgccaacttgaatgtactcat 279
>dbj|AP005614.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
clone:OSJNBa0090H18
Length = 174842
Score = 77.8 bits (39), Expect = 2e-012
Identities = 135/167 (80%)
Strand = Plus / Minus
Query: 37 tgttgtgtagtaacaagacagcatcctgaagaaatcaaagcgatgacctagccggtagat 96
||||||| | |||||||| ||||||||||| ||||||||||| | |||||||| | |||
Sbjct: 89847 tgttgtgaaataacaagagagcatcctgaaaaaatcaaagcgtcgccctagccgatggat 89788
Query: 97 gtcacggctcagcgtttgttcgccattgccatttgctatctttgcctcaaacagagatat 156
|||||||| || |||||||| | ||| |||||||| | || || ||||| |||||
Sbjct: 89787 atcacggctaagagtttgttcactattcccatttgcaactttagcttcaaattttgatat 89728
Query: 157 ttgattgagacctacatcccttcctttgccaacttgcatgtattcat 203
||||| ||||| ||||| | |||||||||||||| ||||| ||||
Sbjct: 89727 ctgattaagaccaacatcacgccctttgccaacttgaatgtactcat 89681
>gb|AACV01003740.1| Oryza sativa (japonica cultivar-group) chromosome 2 Ctg003740, whole
genome shotgun sequence
Length = 20856
Score = 77.8 bits (39), Expect = 2e-012
Identities = 135/167 (80%)
Strand = Plus / Minus
Query: 37 tgttgtgtagtaacaagacagcatcctgaagaaatcaaagcgatgacctagccggtagat 96
||||||| | |||||||| ||||||||||| ||||||||||| | |||||||| | |||
Sbjct: 13868 tgttgtgaaataacaagagagcatcctgaaaaaatcaaagcgtcgccctagccgatggat 13809
Query: 97 gtcacggctcagcgtttgttcgccattgccatttgctatctttgcctcaaacagagatat 156
|||||||| || |||||||| | ||| |||||||| | || || ||||| |||||
Sbjct: 13808 atcacggctaagagtttgttcactattcccatttgcaactttagcttcaaattttgatat 13749
Query: 157 ttgattgagacctacatcccttcctttgccaacttgcatgtattcat 203
||||| ||||| ||||| | |||||||||||||| ||||| ||||
Sbjct: 13748 ctgattaagaccaacatcacgccctttgccaacttgaatgtactcat 13702
>ref|NT_107178.1| Oryza sativa (japonica cultivar-group)
Length = 7645238
Score = 77.8 bits (39), Expect = 2e-012
Identities = 135/167 (80%)
Strand = Plus / Minus
Query: 37 tgttgtgtagtaacaagacagcatcctgaagaaatcaaagcgatgacctagccggtagat 96
||||||| | |||||||| ||||||||||| ||||||||||| | |||||||| | |||
Sbjct: 2343558 tgttgtgaaataacaagagagcatcctgaaaaaatcaaagcgtcgccctagccgatggat 2343499
Query: 97 gtcacggctcagcgtttgttcgccattgccatttgctatctttgcctcaaacagagatat 156
|||||||| || |||||||| | ||| |||||||| | || || ||||| |||||
Sbjct: 2343498 atcacggctaagagtttgttcactattcccatttgcaactttagcttcaaattttgatat 2343439
Query: 157 ttgattgagacctacatcccttcctttgccaacttgcatgtattcat 203
||||| ||||| ||||| | |||||||||||||| ||||| ||||
Sbjct: 2343438 ctgattaagaccaacatcacgccctttgccaacttgaatgtactcat 2343392
>gb|CH401169.1| Oryza sativa (japonica cultivar-group) chromosome 2 scaffold000006 genomic
scaffold, whole genome shotgun sequence
Length = 13452964
Score = 77.8 bits (39), Expect = 2e-012
Identities = 135/167 (80%)
Strand = Plus / Minus
Query: 37 tgttgtgtagtaacaagacagcatcctgaagaaatcaaagcgatgacctagccggtagat 96
||||||| | |||||||| ||||||||||| ||||||||||| | |||||||| | |||
Sbjct: 8446515 tgttgtgaaataacaagagagcatcctgaaaaaatcaaagcgtcgccctagccgatggat 8446456
Query: 97 gtcacggctcagcgtttgttcgccattgccatttgctatctttgcctcaaacagagatat 156
|||||||| || |||||||| | ||| |||||||| | || || ||||| |||||
Sbjct: 8446455 atcacggctaagagtttgttcactattcccatttgcaactttagcttcaaattttgatat 8446396
Query: 157 ttgattgagacctacatcccttcctttgccaacttgcatgtattcat 203
||||| ||||| ||||| | |||||||||||||| ||||| ||||
Sbjct: 8446395 ctgattaagaccaacatcacgccctttgccaacttgaatgtactcat 8446349
>dbj|AG020899.1| Oryza sativa (japonica cultivar-group) DNA, clone:H0205_0_01_1A, 3'
flanking sequence of Tos17 insertion in rice strain
H0205, genomic survey sequence
Length = 799
Score = 75.8 bits (38), Expect = 9e-012
Identities = 65/74 (87%)
Strand = Plus / Plus
Query: 143 tcaaacagagatatttgattgagacctacatcccttcctttgccaacttgcatgtattca 202
||||| ||||| |||||||| ||||| ||||| | ||||||||||||||| |||||||||
Sbjct: 295 tcaaagagagaaatttgattaagaccaacatctcgtcctttgccaacttgaatgtattca 354
Query: 203 tggtgagtaacatt 216
||||| || |||||
Sbjct: 355 tggtgggtgacatt 368
>dbj|AG210876.1| Oryza sativa (japonica cultivar-group) DNA, clone:NF2777_0_702_1A,
3' flanking sequence of Tos17 insertion in rice strain
NF2777, genomic survey sequence
Length = 228
Score = 73.8 bits (37), Expect = 4e-011
Identities = 121/149 (81%)
Strand = Plus / Minus
Query: 56 agcatcctgaagaaatcaaagcgatgacctagccggtagatgtcacggctcagcgtttgt 115
||||| ||||||||||| ||||| || || ||||||||||| |||||||| || || ||
Sbjct: 159 agcattctgaagaaatcgaagcggtgtccaagccggtagatatcacggctaagagtctgc 100
Query: 116 tcgccattgccatttgctatctttgcctcaaacagagatatttgattgagacctacatcc 175
|| ||||| ||||| || | ||| ||||||||| ||| || || || | ||||||||
Sbjct: 99 tctccatttccattggccaccttagcctcaaacttagagatctggtttaaccctacatct 40
Query: 176 cttcctttgccaacttgcatgtattcatg 204
|||||||| |||||||||| ||||||||
Sbjct: 39 cttcctttaccaacttgcacatattcatg 11
>dbj|AG205959.1| Oryza sativa (japonica cultivar-group) DNA, clone:NE5025_0_702_1A,
3' flanking sequence of Tos17 insertion in rice strain
NE5025, genomic survey sequence
Length = 384
Score = 73.8 bits (37), Expect = 4e-011
Identities = 121/149 (81%)
Strand = Plus / Minus
Query: 56 agcatcctgaagaaatcaaagcgatgacctagccggtagatgtcacggctcagcgtttgt 115
||||| ||||||||||| ||||| || || ||||||||||| |||||||| || || ||
Sbjct: 322 agcattctgaagaaatcgaagcggtgtccaagccggtagatatcacggctaagagtctgc 263
Query: 116 tcgccattgccatttgctatctttgcctcaaacagagatatttgattgagacctacatcc 175
|| ||||| ||||| || | ||| ||||||||| ||| || || || | ||||||||
Sbjct: 262 tctccatttccattggccaccttagcctcaaacttagagatctggtttaaccctacatct 203
Query: 176 cttcctttgccaacttgcatgtattcatg 204
|||||||| |||||||||| ||||||||
Sbjct: 202 cttcctttaccaacttgcacatattcatg 174
>dbj|AK062279.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-100-C02, full
insert sequence
Length = 2219
Score = 73.8 bits (37), Expect = 4e-011
Identities = 121/149 (81%)
Strand = Plus / Minus
Query: 56 agcatcctgaagaaatcaaagcgatgacctagccggtagatgtcacggctcagcgtttgt 115
||||| ||||||||||| ||||| || || ||||||||||| |||||||| || || ||
Sbjct: 552 agcattctgaagaaatcgaagcggtgtccaagccggtagatatcacggctaagagtctgc 493
Query: 116 tcgccattgccatttgctatctttgcctcaaacagagatatttgattgagacctacatcc 175
|| ||||| ||||| || | ||| ||||||||| ||| || || || | ||||||||
Sbjct: 492 tctccatttccattggccaccttagcctcaaacttagagatctggtttaaccctacatct 433
Query: 176 cttcctttgccaacttgcatgtattcatg 204
|||||||| |||||||||| ||||||||
Sbjct: 432 cttcctttaccaacttgcacatattcatg 404
>gb|AC104427.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1015F07,
complete sequence
Length = 117612
Score = 73.8 bits (37), Expect = 4e-011
Identities = 121/149 (81%)
Strand = Plus / Plus
Query: 56 agcatcctgaagaaatcaaagcgatgacctagccggtagatgtcacggctcagcgtttgt 115
||||| ||||||||||| ||||| || || ||||||||||| |||||||| || || ||
Sbjct: 101321 agcattctgaagaaatcgaagcggtgtccaagccggtagatatcacggctaagagtctgc 101380
Query: 116 tcgccattgccatttgctatctttgcctcaaacagagatatttgattgagacctacatcc 175
|| ||||| ||||| || | ||| ||||||||| ||| || || || | ||||||||
Sbjct: 101381 tctccatttccattggccaccttagcctcaaacttagagatctggtttaaccctacatct 101440
Query: 176 cttcctttgccaacttgcatgtattcatg 204
|||||||| |||||||||| ||||||||
Sbjct: 101441 cttcctttaccaacttgcacatattcatg 101469
>gb|AC144426.1| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJA1015F07,
complete sequence
Length = 127098
Score = 73.8 bits (37), Expect = 4e-011
Identities = 121/149 (81%)
Strand = Plus / Plus
Query: 56 agcatcctgaagaaatcaaagcgatgacctagccggtagatgtcacggctcagcgtttgt 115
||||| ||||||||||| ||||| || || ||||||||||| |||||||| || || ||
Sbjct: 43709 agcattctgaagaaatcgaagcggtgtccaagccggtagatatcacggctaagagtctgc 43768
Query: 116 tcgccattgccatttgctatctttgcctcaaacagagatatttgattgagacctacatcc 175
|| ||||| ||||| || | ||| ||||||||| ||| || || || | ||||||||
Sbjct: 43769 tctccatttccattggccaccttagcctcaaacttagagatctggtttaaccctacatct 43828
Query: 176 cttcctttgccaacttgcatgtattcatg 204
|||||||| |||||||||| ||||||||
Sbjct: 43829 cttcctttaccaacttgcacatattcatg 43857
>dbj|AK105008.2| Oryza sativa (japonica cultivar-group) cDNA clone:001-006-G07, full
insert sequence
Length = 1992
Score = 73.8 bits (37), Expect = 4e-011
Identities = 121/149 (81%)
Strand = Plus / Minus
Query: 56 agcatcctgaagaaatcaaagcgatgacctagccggtagatgtcacggctcagcgtttgt 115
||||| ||||||||||| ||||| || || ||||||||||| |||||||| || || ||
Sbjct: 253 agcattctgaagaaatcgaagcggtgtccaagccggtagatatcacggctaagagtctgc 194
Query: 116 tcgccattgccatttgctatctttgcctcaaacagagatatttgattgagacctacatcc 175
|| ||||| ||||| || | ||| ||||||||| ||| || || || | ||||||||
Sbjct: 193 tctccatttccattggccaccttagcctcaaacttagagatctggtttaaccctacatct 134
Query: 176 cttcctttgccaacttgcatgtattcatg 204
|||||||| |||||||||| ||||||||
Sbjct: 133 cttcctttaccaacttgcacatattcatg 105
>gb|AACV01005795.1| Oryza sativa (japonica cultivar-group) chromosome 3 Ctg005795, whole
genome shotgun sequence
Length = 23395
Score = 73.8 bits (37), Expect = 4e-011
Identities = 121/149 (81%)
Strand = Plus / Minus
Query: 56 agcatcctgaagaaatcaaagcgatgacctagccggtagatgtcacggctcagcgtttgt 115
||||| ||||||||||| ||||| || || ||||||||||| |||||||| || || ||
Sbjct: 19725 agcattctgaagaaatcgaagcggtgtccaagccggtagatatcacggctaagagtctgc 19666
Query: 116 tcgccattgccatttgctatctttgcctcaaacagagatatttgattgagacctacatcc 175
|| ||||| ||||| || | ||| ||||||||| ||| || || || | ||||||||
Sbjct: 19665 tctccatttccattggccaccttagcctcaaacttagagatctggtttaaccctacatct 19606
Query: 176 cttcctttgccaacttgcatgtattcatg 204
|||||||| |||||||||| ||||||||
Sbjct: 19605 cttcctttaccaacttgcacatattcatg 19577
>ref|NM_187591.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 4929
Score = 73.8 bits (37), Expect = 4e-011
Identities = 121/149 (81%)
Strand = Plus / Minus
Query: 56 agcatcctgaagaaatcaaagcgatgacctagccggtagatgtcacggctcagcgtttgt 115
||||| ||||||||||| ||||| || || ||||||||||| |||||||| || || ||
Sbjct: 3599 agcattctgaagaaatcgaagcggtgtccaagccggtagatatcacggctaagagtctgc 3540
Query: 116 tcgccattgccatttgctatctttgcctcaaacagagatatttgattgagacctacatcc 175
|| ||||| ||||| || | ||| ||||||||| ||| || || || | ||||||||
Sbjct: 3539 tctccatttccattggccaccttagcctcaaacttagagatctggtttaaccctacatct 3480
Query: 176 cttcctttgccaacttgcatgtattcatg 204
|||||||| |||||||||| ||||||||
Sbjct: 3479 cttcctttaccaacttgcacatattcatg 3451
>ref|NT_107183.1| Oryza sativa (japonica cultivar-group)
Length = 1680144
Score = 73.8 bits (37), Expect = 4e-011
Identities = 121/149 (81%)
Strand = Plus / Plus
Query: 56 agcatcctgaagaaatcaaagcgatgacctagccggtagatgtcacggctcagcgtttgt 115
||||| ||||||||||| ||||| || || ||||||||||| |||||||| || || ||
Sbjct: 1564146 agcattctgaagaaatcgaagcggtgtccaagccggtagatatcacggctaagagtctgc 1564205
Query: 116 tcgccattgccatttgctatctttgcctcaaacagagatatttgattgagacctacatcc 175
|| ||||| ||||| || | ||| ||||||||| ||| || || || | ||||||||
Sbjct: 1564206 tctccatttccattggccaccttagcctcaaacttagagatctggtttaaccctacatct 1564265
Query: 176 cttcctttgccaacttgcatgtattcatg 204
|||||||| |||||||||| ||||||||
Sbjct: 1564266 cttcctttaccaacttgcacatattcatg 1564294
>gb|CH401173.1| Oryza sativa (japonica cultivar-group) chromosome 3 scaffold000010 genomic
scaffold, whole genome shotgun sequence
Length = 13858245
Score = 73.8 bits (37), Expect = 4e-011
Identities = 121/149 (81%)
Strand = Plus / Plus
Query: 56 agcatcctgaagaaatcaaagcgatgacctagccggtagatgtcacggctcagcgtttgt 115
||||| ||||||||||| ||||| || || ||||||||||| |||||||| || || ||
Sbjct: 1570202 agcattctgaagaaatcgaagcggtgtccaagccggtagatatcacggctaagagtctgc 1570261
Query: 116 tcgccattgccatttgctatctttgcctcaaacagagatatttgattgagacctacatcc 175
|| ||||| ||||| || | ||| ||||||||| ||| || || || | ||||||||
Sbjct: 1570262 tctccatttccattggccaccttagcctcaaacttagagatctggtttaaccctacatct 1570321
Query: 176 cttcctttgccaacttgcatgtattcatg 204
|||||||| |||||||||| ||||||||
Sbjct: 1570322 cttcctttaccaacttgcacatattcatg 1570350
Score = 36.2 bits (18), Expect = 8.2
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 39 ttgtgtagtaacaagaca 56
||||||||||||||||||
Sbjct: 7379945 ttgtgtagtaacaagaca 7379962
>gb|CM000140.1| Oryza sativa (japonica cultivar-group) chromosome 3, whole genome shotgun
sequence
Length = 37803064
Score = 73.8 bits (37), Expect = 4e-011
Identities = 121/149 (81%)
Strand = Plus / Plus
Query: 56 agcatcctgaagaaatcaaagcgatgacctagccggtagatgtcacggctcagcgtttgt 115
||||| ||||||||||| ||||| || || ||||||||||| |||||||| || || ||
Sbjct: 1762564 agcattctgaagaaatcgaagcggtgtccaagccggtagatatcacggctaagagtctgc 1762623
Query: 116 tcgccattgccatttgctatctttgcctcaaacagagatatttgattgagacctacatcc 175
|| ||||| ||||| || | ||| ||||||||| ||| || || || | ||||||||
Sbjct: 1762624 tctccatttccattggccaccttagcctcaaacttagagatctggtttaaccctacatct 1762683
Query: 176 cttcctttgccaacttgcatgtattcatg 204
|||||||| |||||||||| ||||||||
Sbjct: 1762684 cttcctttaccaacttgcacatattcatg 1762712
Score = 36.2 bits (18), Expect = 8.2
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 39 ttgtgtagtaacaagaca 56
||||||||||||||||||
Sbjct: 7572307 ttgtgtagtaacaagaca 7572324
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
sequence
Length = 36192742
Score = 73.8 bits (37), Expect = 4e-011
Identities = 121/149 (81%)
Strand = Plus / Plus
Query: 56 agcatcctgaagaaatcaaagcgatgacctagccggtagatgtcacggctcagcgtttgt 115
||||| ||||||||||| ||||| || || ||||||||||| |||||||| || || ||
Sbjct: 1564146 agcattctgaagaaatcgaagcggtgtccaagccggtagatatcacggctaagagtctgc 1564205
Query: 116 tcgccattgccatttgctatctttgcctcaaacagagatatttgattgagacctacatcc 175
|| ||||| ||||| || | ||| ||||||||| ||| || || || | ||||||||
Sbjct: 1564206 tctccatttccattggccaccttagcctcaaacttagagatctggtttaaccctacatct 1564265
Query: 176 cttcctttgccaacttgcatgtattcatg 204
|||||||| |||||||||| ||||||||
Sbjct: 1564266 cttcctttaccaacttgcacatattcatg 1564294
Score = 36.2 bits (18), Expect = 8.2
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 39 ttgtgtagtaacaagaca 56
||||||||||||||||||
Sbjct: 7345228 ttgtgtagtaacaagaca 7345245
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
Length = 36102668
Score = 73.8 bits (37), Expect = 4e-011
Identities = 121/149 (81%)
Strand = Plus / Plus
Query: 56 agcatcctgaagaaatcaaagcgatgacctagccggtagatgtcacggctcagcgtttgt 115
||||| ||||||||||| ||||| || || ||||||||||| |||||||| || || ||
Sbjct: 1564148 agcattctgaagaaatcgaagcggtgtccaagccggtagatatcacggctaagagtctgc 1564207
Query: 116 tcgccattgccatttgctatctttgcctcaaacagagatatttgattgagacctacatcc 175
|| ||||| ||||| || | ||| ||||||||| ||| || || || | ||||||||
Sbjct: 1564208 tctccatttccattggccaccttagcctcaaacttagagatctggtttaaccctacatct 1564267
Query: 176 cttcctttgccaacttgcatgtattcatg 204
|||||||| |||||||||| ||||||||
Sbjct: 1564268 cttcctttaccaacttgcacatattcatg 1564296
Score = 36.2 bits (18), Expect = 8.2
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 39 ttgtgtagtaacaagaca 56
||||||||||||||||||
Sbjct: 7347333 ttgtgtagtaacaagaca 7347350
>gb|AACV01002091.1| Oryza sativa (japonica cultivar-group) chromosome 1 Ctg002091, whole
genome shotgun sequence
Length = 57249
Score = 69.9 bits (35), Expect = 6e-010
Identities = 53/59 (89%)
Strand = Plus / Minus
Query: 158 tgattgagacctacatcccttcctttgccaacttgcatgtattcatggtgagtaacatt 216
|||||||| || |||||||||||||| ||||| || |||||||||||||| ||||||||
Sbjct: 41356 tgattgagccccacatcccttcctttaccaacctggatgtattcatggtgtgtaacatt 41298
>dbj|BA000010.8| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43342410
Score = 69.9 bits (35), Expect = 6e-010
Identities = 53/59 (89%)
Strand = Plus / Plus
Query: 158 tgattgagacctacatcccttcctttgccaacttgcatgtattcatggtgagtaacatt 216
|||||||| || |||||||||||||| ||||| || |||||||||||||| ||||||||
Sbjct: 27682553 tgattgagccccacatcccttcctttaccaacctggatgtattcatggtgtgtaacatt 27682611
Score = 48.1 bits (24), Expect = 0.002
Identities = 174/224 (77%)
Strand = Plus / Plus
Query: 21 tgaagtagaaaccaattgttgtgtagtaacaagacagcatcctgaagaaatcaaagcgat 80
||||||||||||||| ||| ||| |||| ||||| ||||||| |||||||||| | |
Sbjct: 19380562 tgaagtagaaaccaactgtagtgaagtatagagacaacatcctgtagaaatcaaatctgt 19380621
Query: 81 gacctagccggtagatgtcacggctcagcgtttgttcgccattgccatttgctatctttg 140
| ||||| || || || || || | || |||||||| ||||| || ||||| | ||| |
Sbjct: 19380622 gccctagtcgataaatatctcgacagagtgtttgttcaccatttccgtttgccaccttgg 19380681
Query: 141 cctcaaacagagatatttgattgagacctacatcccttcctttgccaacttgcatgtatt 200
||||||| ||||||||||| | || ||||| | |||||| || | || || ||||
Sbjct: 19380682 cctcaaagttggatatttgattcattccaacatcacgtcctttacccagctgtatatatt 19380741
Query: 201 catggtgagtaacattgccttcgcgcaatgtggaattgaatcct 244
|||| ||||||||||| |||| |||| || ||||||||||||
Sbjct: 19380742 catgatgagtaacatttccttgccgcagggttgaattgaatcct 19380785
Score = 46.1 bits (23), Expect = 0.008
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 86 agccggtagatgtcacggctcagcgtttgttcgccattgccatttgc 132
||||| ||||| ||||| |||| |||||||| ||||||||||||||
Sbjct: 19335524 agccgatagatatcacgactcaatgtttgttcaccattgccatttgc 19335570
Score = 36.2 bits (18), Expect = 8.2
Identities = 21/22 (95%)
Strand = Plus / Minus
Query: 27 agaaaccaattgttgtgtagta 48
||||||||||||||||| ||||
Sbjct: 40570104 agaaaccaattgttgtgaagta 40570083
>ref|NM_191973.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 5310
Score = 69.9 bits (35), Expect = 6e-010
Identities = 53/59 (89%)
Strand = Plus / Minus
Query: 158 tgattgagacctacatcccttcctttgccaacttgcatgtattcatggtgagtaacatt 216
|||||||| || |||||||||||||| ||||| || |||||||||||||| ||||||||
Sbjct: 3893 tgattgagccccacatcccttcctttaccaacctggatgtattcatggtgtgtaacatt 3835
>ref|NT_079927.2| Oryza sativa (japonica cultivar-group)
Length = 14818989
Score = 69.9 bits (35), Expect = 6e-010
Identities = 53/59 (89%)
Strand = Plus / Plus
Query: 158 tgattgagacctacatcccttcctttgccaacttgcatgtattcatggtgagtaacatt 216
|||||||| || |||||||||||||| ||||| || |||||||||||||| ||||||||
Sbjct: 2129936 tgattgagccccacatcccttcctttaccaacctggatgtattcatggtgtgtaacatt 2129994
>dbj|AP003223.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
clone:P0007F06
Length = 150817
Score = 69.9 bits (35), Expect = 6e-010
Identities = 53/59 (89%)
Strand = Plus / Plus
Query: 158 tgattgagacctacatcccttcctttgccaacttgcatgtattcatggtgagtaacatt 216
|||||||| || |||||||||||||| ||||| || |||||||||||||| ||||||||
Sbjct: 69177 tgattgagccccacatcccttcctttaccaacctggatgtattcatggtgtgtaacatt 69235
>dbj|AP003264.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
clone:P0485G01
Length = 167203
Score = 69.9 bits (35), Expect = 6e-010
Identities = 53/59 (89%)
Strand = Plus / Plus
Query: 158 tgattgagacctacatcccttcctttgccaacttgcatgtattcatggtgagtaacatt 216
|||||||| || |||||||||||||| ||||| || |||||||||||||| ||||||||
Sbjct: 10449 tgattgagccccacatcccttcctttaccaacctggatgtattcatggtgtgtaacatt 10507
>gb|CH401168.1| Oryza sativa (japonica cultivar-group) chromosome 1 scaffold000005 genomic
scaffold, whole genome shotgun sequence
Length = 17394610
Score = 69.9 bits (35), Expect = 6e-010
Identities = 53/59 (89%)
Strand = Plus / Plus
Query: 158 tgattgagacctacatcccttcctttgccaacttgcatgtattcatggtgagtaacatt 216
|||||||| || |||||||||||||| ||||| || |||||||||||||| ||||||||
Sbjct: 2070387 tgattgagccccacatcccttcctttaccaacctggatgtattcatggtgtgtaacatt 2070445
Score = 36.2 bits (18), Expect = 8.2
Identities = 21/22 (95%)
Strand = Plus / Minus
Query: 27 agaaaccaattgttgtgtagta 48
||||||||||||||||| ||||
Sbjct: 14771309 agaaaccaattgttgtgaagta 14771288
>gb|CM000138.1| Oryza sativa (japonica cultivar-group) chromosome 1, whole genome shotgun
sequence
Length = 42596331
Score = 69.9 bits (35), Expect = 6e-010
Identities = 53/59 (89%)
Strand = Plus / Plus
Query: 158 tgattgagacctacatcccttcctttgccaacttgcatgtattcatggtgagtaacatt 216
|||||||| || |||||||||||||| ||||| || |||||||||||||| ||||||||
Sbjct: 27272108 tgattgagccccacatcccttcctttaccaacctggatgtattcatggtgtgtaacatt 27272166
Score = 48.1 bits (24), Expect = 0.002
Identities = 174/224 (77%)
Strand = Plus / Plus
Query: 21 tgaagtagaaaccaattgttgtgtagtaacaagacagcatcctgaagaaatcaaagcgat 80
||||||||||||||| ||| ||| |||| ||||| ||||||| |||||||||| | |
Sbjct: 19057348 tgaagtagaaaccaactgtagtgaagtatagagacaacatcctgtagaaatcaaatctgt 19057407
Query: 81 gacctagccggtagatgtcacggctcagcgtttgttcgccattgccatttgctatctttg 140
| ||||| || || || || || | || |||||||| ||||| || ||||| | ||| |
Sbjct: 19057408 gccctagtcgataaatatctcgacagagtgtttgttcaccatttccgtttgccaccttgg 19057467
Query: 141 cctcaaacagagatatttgattgagacctacatcccttcctttgccaacttgcatgtatt 200
||||||| ||||||||||| | || ||||| | |||||| || | || || ||||
Sbjct: 19057468 cctcaaagttggatatttgattcattccaacatcacgtcctttacccagctgtatatatt 19057527
Query: 201 catggtgagtaacattgccttcgcgcaatgtggaattgaatcct 244
|||| ||||||||||| |||| |||| || ||||||||||||
Sbjct: 19057528 catgatgagtaacatttccttgccgcagggttgaattgaatcct 19057571
Score = 46.1 bits (23), Expect = 0.008
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 86 agccggtagatgtcacggctcagcgtttgttcgccattgccatttgc 132
||||| ||||| ||||| |||| |||||||| ||||||||||||||
Sbjct: 19011765 agccgatagatatcacgactcaatgtttgttcaccattgccatttgc 19011811
Score = 36.2 bits (18), Expect = 8.2
Identities = 21/22 (95%)
Strand = Plus / Minus
Query: 27 agaaaccaattgttgtgtagta 48
||||||||||||||||| ||||
Sbjct: 39973030 agaaaccaattgttgtgaagta 39973009
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43261740
Score = 69.9 bits (35), Expect = 6e-010
Identities = 53/59 (89%)
Strand = Plus / Plus
Query: 158 tgattgagacctacatcccttcctttgccaacttgcatgtattcatggtgagtaacatt 216
|||||||| || |||||||||||||| ||||| || |||||||||||||| ||||||||
Sbjct: 27601883 tgattgagccccacatcccttcctttaccaacctggatgtattcatggtgtgtaacatt 27601941
Score = 48.1 bits (24), Expect = 0.002
Identities = 174/224 (77%)
Strand = Plus / Plus
Query: 21 tgaagtagaaaccaattgttgtgtagtaacaagacagcatcctgaagaaatcaaagcgat 80
||||||||||||||| ||| ||| |||| ||||| ||||||| |||||||||| | |
Sbjct: 19301845 tgaagtagaaaccaactgtagtgaagtatagagacaacatcctgtagaaatcaaatctgt 19301904
Query: 81 gacctagccggtagatgtcacggctcagcgtttgttcgccattgccatttgctatctttg 140
| ||||| || || || || || | || |||||||| ||||| || ||||| | ||| |
Sbjct: 19301905 gccctagtcgataaatatctcgacagagtgtttgttcaccatttccgtttgccaccttgg 19301964
Query: 141 cctcaaacagagatatttgattgagacctacatcccttcctttgccaacttgcatgtatt 200
||||||| ||||||||||| | || ||||| | |||||| || | || || ||||
Sbjct: 19301965 cctcaaagttggatatttgattcattccaacatcacgtcctttacccagctgtatatatt 19302024
Query: 201 catggtgagtaacattgccttcgcgcaatgtggaattgaatcct 244
|||| ||||||||||| |||| |||| || ||||||||||||
Sbjct: 19302025 catgatgagtaacatttccttgccgcagggttgaattgaatcct 19302068
Score = 46.1 bits (23), Expect = 0.008
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 86 agccggtagatgtcacggctcagcgtttgttcgccattgccatttgc 132
||||| ||||| ||||| |||| |||||||| ||||||||||||||
Sbjct: 19256807 agccgatagatatcacgactcaatgtttgttcaccattgccatttgc 19256853
Score = 36.2 bits (18), Expect = 8.2
Identities = 21/22 (95%)
Strand = Plus / Minus
Query: 27 agaaaccaattgttgtgtagta 48
||||||||||||||||| ||||
Sbjct: 40489434 agaaaccaattgttgtgaagta 40489413
>dbj|AG210242.1| Oryza sativa (japonica cultivar-group) DNA, clone:NF0030_0_131_1A,
3' flanking sequence of Tos17 insertion in rice strain
NF0030, genomic survey sequence
Length = 581
Score = 67.9 bits (34), Expect = 2e-009
Identities = 55/62 (88%)
Strand = Plus / Plus
Query: 155 atttgattgagacctacatcccttcctttgccaacttgcatgtattcatggtgagtaaca 214
|||||||| ||||| ||||| | ||||||||||||||| |||||||||||||| || |||
Sbjct: 176 atttgattaagaccaacatctcgtcctttgccaacttgaatgtattcatggtgggtgaca 235
Query: 215 tt 216
||
Sbjct: 236 tt 237
>ref|NM_193211.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 5634
Score = 54.0 bits (27), Expect = 3e-005
Identities = 177/227 (77%)
Strand = Plus / Minus
Query: 21 tgaagtagaaaccaattgttgtgtagtaacaagacagcatcctgaagaaatcaaagcgat 80
||||||||||||||| ||| ||| |||| ||||| ||||||| |||||||||| | |
Sbjct: 4351 tgaagtagaaaccaactgtagtgaagtatagagacaacatcctgtagaaatcaaatctgt 4292
Query: 81 gacctagccggtagatgtcacggctcagcgtttgttcgccattgccatttgctatctttg 140
| ||||| || || || || || | || |||||||| ||||| || ||||| | ||| |
Sbjct: 4291 gccctagtcgataaatatctcgacagagtgtttgttcaccatttccgtttgccaccttgg 4232
Query: 141 cctcaaacagagatatttgattgagacctacatcccttcctttgccaacttgcatgtatt 200
||||||| ||||||||||| | || ||||| | |||||| || | || || ||||
Sbjct: 4231 cctcaaagttggatatttgattcattccaacatcacgtcctttacccagctgtatatatt 4172
Query: 201 catggtgagtaacattgccttcgcgcaatgtggaattgaatcctgca 247
|||| ||||||||||| |||| |||| || |||||||||||||||
Sbjct: 4171 catgatgagtaacatttccttgccgcagggttgaattgaatcctgca 4125
>gb|CB642889.1|CB642889 OSJNEb03E21.f OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb03E21 5', mRNA sequence
Length = 734
Score = 52.0 bits (26), Expect = 1e-004
Identities = 44/50 (88%)
Strand = Plus / Minus
Query: 56 agcatcctgaagaaatcaaagcgatgacctagccggtagatgtcacggct 105
||||| ||||||||||| ||||| || || |||||||||||| |||||||
Sbjct: 58 agcattctgaagaaatcgaagcggtgtccaagccggtagatggcacggct 9
>gb|CW883855.1|CW883855 Rice CISP Intron:I00_X00_F_PRSC1_002_RICE_CT99 CT99 Oryza sativa
(japonica cultivar-group) genomic, DNA sequence
Length = 500
Score = 48.1 bits (24), Expect = 0.002
Identities = 174/224 (77%)
Strand = Plus / Minus
Query: 21 tgaagtagaaaccaattgttgtgtagtaacaagacagcatcctgaagaaatcaaagcgat 80
||||||||||||||| ||| ||| |||| ||||| ||||||| |||||||||| | |
Sbjct: 280 tgaagtagaaaccaactgtagtgaagtatagagacaacatcctgtagaaatcaaatctgt 221
Query: 81 gacctagccggtagatgtcacggctcagcgtttgttcgccattgccatttgctatctttg 140
| ||||| || || || || || | || |||||||| ||||| || ||||| | ||| |
Sbjct: 220 gccctagtcgataaatatctcgacagagtgtttgttcaccatttccgtttgccaccttgg 161
Query: 141 cctcaaacagagatatttgattgagacctacatcccttcctttgccaacttgcatgtatt 200
||||||| ||||||||||| | || ||||| | |||||| || | || || ||||
Sbjct: 160 cctcaaagttggatatttgattcattccaacatcacgtcctttacccagctgtatatatt 101
Query: 201 catggtgagtaacattgccttcgcgcaatgtggaattgaatcct 244
|||| ||||||||||| |||| |||| || ||||||||||||
Sbjct: 100 catgatgagtaacatttccttgccgcagggttgaattgaatcct 57
>dbj|AK064446.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-110-F01, full
insert sequence
Length = 1923
Score = 48.1 bits (24), Expect = 0.002
Identities = 174/224 (77%)
Strand = Plus / Minus
Query: 21 tgaagtagaaaccaattgttgtgtagtaacaagacagcatcctgaagaaatcaaagcgat 80
||||||||||||||| ||| ||| |||| ||||| ||||||| |||||||||| | |
Sbjct: 302 tgaagtagaaaccaactgtagtgaagtatagagacaacatcctgtagaaatcaaatctgt 243
Query: 81 gacctagccggtagatgtcacggctcagcgtttgttcgccattgccatttgctatctttg 140
| ||||| || || || || || | || |||||||| ||||| || ||||| | ||| |
Sbjct: 242 gccctagtcgataaatatctcgacagagtgtttgttcaccatttccgtttgccaccttgg 183
Query: 141 cctcaaacagagatatttgattgagacctacatcccttcctttgccaacttgcatgtatt 200
||||||| ||||||||||| | || ||||| | |||||| || | || || ||||
Sbjct: 182 cctcaaagttggatatttgattcattccaacatcacgtcctttacccagctgtatatatt 123
Query: 201 catggtgagtaacattgccttcgcgcaatgtggaattgaatcct 244
|||| ||||||||||| |||| |||| || ||||||||||||
Sbjct: 122 catgatgagtaacatttccttgccgcagggttgaattgaatcct 79
>gb|AACV01001413.1| Oryza sativa (japonica cultivar-group) chromosome 1 Ctg001413, whole
genome shotgun sequence
Length = 32302
Score = 48.1 bits (24), Expect = 0.002
Identities = 174/224 (77%)
Strand = Plus / Plus
Query: 21 tgaagtagaaaccaattgttgtgtagtaacaagacagcatcctgaagaaatcaaagcgat 80
||||||||||||||| ||| ||| |||| ||||| ||||||| |||||||||| | |
Sbjct: 8810 tgaagtagaaaccaactgtagtgaagtatagagacaacatcctgtagaaatcaaatctgt 8869
Query: 81 gacctagccggtagatgtcacggctcagcgtttgttcgccattgccatttgctatctttg 140
| ||||| || || || || || | || |||||||| ||||| || ||||| | ||| |
Sbjct: 8870 gccctagtcgataaatatctcgacagagtgtttgttcaccatttccgtttgccaccttgg 8929
Query: 141 cctcaaacagagatatttgattgagacctacatcccttcctttgccaacttgcatgtatt 200
||||||| ||||||||||| | || ||||| | |||||| || | || || ||||
Sbjct: 8930 cctcaaagttggatatttgattcattccaacatcacgtcctttacccagctgtatatatt 8989
Query: 201 catggtgagtaacattgccttcgcgcaatgtggaattgaatcct 244
|||| ||||||||||| |||| |||| || ||||||||||||
Sbjct: 8990 catgatgagtaacatttccttgccgcagggttgaattgaatcct 9033
>ref|NT_079926.2| Oryza sativa (japonica cultivar-group)
Length = 8469246
Score = 48.1 bits (24), Expect = 0.002
Identities = 174/224 (77%)
Strand = Plus / Plus
Query: 21 tgaagtagaaaccaattgttgtgtagtaacaagacagcatcctgaagaaatcaaagcgat 80
||||||||||||||| ||| ||| |||| ||||| ||||||| |||||||||| | |
Sbjct: 2298794 tgaagtagaaaccaactgtagtgaagtatagagacaacatcctgtagaaatcaaatctgt 2298853
Query: 81 gacctagccggtagatgtcacggctcagcgtttgttcgccattgccatttgctatctttg 140
| ||||| || || || || || | || |||||||| ||||| || ||||| | ||| |
Sbjct: 2298854 gccctagtcgataaatatctcgacagagtgtttgttcaccatttccgtttgccaccttgg 2298913
Query: 141 cctcaaacagagatatttgattgagacctacatcccttcctttgccaacttgcatgtatt 200
||||||| ||||||||||| | || ||||| | |||||| || | || || ||||
Sbjct: 2298914 cctcaaagttggatatttgattcattccaacatcacgtcctttacccagctgtatatatt 2298973
Query: 201 catggtgagtaacattgccttcgcgcaatgtggaattgaatcct 244
|||| ||||||||||| |||| |||| || ||||||||||||
Sbjct: 2298974 catgatgagtaacatttccttgccgcagggttgaattgaatcct 2299017
Score = 46.1 bits (23), Expect = 0.008
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 86 agccggtagatgtcacggctcagcgtttgttcgccattgccatttgc 132
||||| ||||| ||||| |||| |||||||| ||||||||||||||
Sbjct: 2253756 agccgatagatatcacgactcaatgtttgttcaccattgccatttgc 2253802
>dbj|AP003447.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
clone:OJ1619_F12
Length = 133028
Score = 48.1 bits (24), Expect = 0.002
Identities = 174/224 (77%)
Strand = Plus / Plus
Query: 21 tgaagtagaaaccaattgttgtgtagtaacaagacagcatcctgaagaaatcaaagcgat 80
||||||||||||||| ||| ||| |||| ||||| ||||||| |||||||||| | |
Sbjct: 121466 tgaagtagaaaccaactgtagtgaagtatagagacaacatcctgtagaaatcaaatctgt 121525
Query: 81 gacctagccggtagatgtcacggctcagcgtttgttcgccattgccatttgctatctttg 140
| ||||| || || || || || | || |||||||| ||||| || ||||| | ||| |
Sbjct: 121526 gccctagtcgataaatatctcgacagagtgtttgttcaccatttccgtttgccaccttgg 121585
Query: 141 cctcaaacagagatatttgattgagacctacatcccttcctttgccaacttgcatgtatt 200
||||||| ||||||||||| | || ||||| | |||||| || | || || ||||
Sbjct: 121586 cctcaaagttggatatttgattcattccaacatcacgtcctttacccagctgtatatatt 121645
Query: 201 catggtgagtaacattgccttcgcgcaatgtggaattgaatcct 244
|||| ||||||||||| |||| |||| || ||||||||||||
Sbjct: 121646 catgatgagtaacatttccttgccgcagggttgaattgaatcct 121689
Score = 46.1 bits (23), Expect = 0.008
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 86 agccggtagatgtcacggctcagcgtttgttcgccattgccatttgc 132
||||| ||||| ||||| |||| |||||||| ||||||||||||||
Sbjct: 76428 agccgatagatatcacgactcaatgtttgttcaccattgccatttgc 76474
>dbj|AP003445.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
clone:OJ1029_F04
Length = 141834
Score = 48.1 bits (24), Expect = 0.002
Identities = 174/224 (77%)
Strand = Plus / Plus
Query: 21 tgaagtagaaaccaattgttgtgtagtaacaagacagcatcctgaagaaatcaaagcgat 80
||||||||||||||| ||| ||| |||| ||||| ||||||| |||||||||| | |
Sbjct: 29850 tgaagtagaaaccaactgtagtgaagtatagagacaacatcctgtagaaatcaaatctgt 29909
Query: 81 gacctagccggtagatgtcacggctcagcgtttgttcgccattgccatttgctatctttg 140
| ||||| || || || || || | || |||||||| ||||| || ||||| | ||| |
Sbjct: 29910 gccctagtcgataaatatctcgacagagtgtttgttcaccatttccgtttgccaccttgg 29969
Query: 141 cctcaaacagagatatttgattgagacctacatcccttcctttgccaacttgcatgtatt 200
||||||| ||||||||||| | || ||||| | |||||| || | || || ||||
Sbjct: 29970 cctcaaagttggatatttgattcattccaacatcacgtcctttacccagctgtatatatt 30029
Query: 201 catggtgagtaacattgccttcgcgcaatgtggaattgaatcct 244
|||| ||||||||||| |||| |||| || ||||||||||||
Sbjct: 30030 catgatgagtaacatttccttgccgcagggttgaattgaatcct 30073
>gb|CH401166.1| Oryza sativa (japonica cultivar-group) chromosome 1 scaffold000003 genomic
scaffold, whole genome shotgun sequence
Length = 8539496
Score = 48.1 bits (24), Expect = 0.002
Identities = 174/224 (77%)
Strand = Plus / Plus
Query: 21 tgaagtagaaaccaattgttgtgtagtaacaagacagcatcctgaagaaatcaaagcgat 80
||||||||||||||| ||| ||| |||| ||||| ||||||| |||||||||| | |
Sbjct: 2432225 tgaagtagaaaccaactgtagtgaagtatagagacaacatcctgtagaaatcaaatctgt 2432284
Query: 81 gacctagccggtagatgtcacggctcagcgtttgttcgccattgccatttgctatctttg 140
| ||||| || || || || || | || |||||||| ||||| || ||||| | ||| |
Sbjct: 2432285 gccctagtcgataaatatctcgacagagtgtttgttcaccatttccgtttgccaccttgg 2432344
Query: 141 cctcaaacagagatatttgattgagacctacatcccttcctttgccaacttgcatgtatt 200
||||||| ||||||||||| | || ||||| | |||||| || | || || ||||
Sbjct: 2432345 cctcaaagttggatatttgattcattccaacatcacgtcctttacccagctgtatatatt 2432404
Query: 201 catggtgagtaacattgccttcgcgcaatgtggaattgaatcct 244
|||| ||||||||||| |||| |||| || ||||||||||||
Sbjct: 2432405 catgatgagtaacatttccttgccgcagggttgaattgaatcct 2432448
Score = 46.1 bits (23), Expect = 0.008
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 86 agccggtagatgtcacggctcagcgtttgttcgccattgccatttgc 132
||||| ||||| ||||| |||| |||||||| ||||||||||||||
Sbjct: 2386642 agccgatagatatcacgactcaatgtttgttcaccattgccatttgc 2386688
>dbj|AG211136.1| Oryza sativa (japonica cultivar-group) DNA, clone:NF3711_0_102_1A,
3' flanking sequence of Tos17 insertion in rice strain
NF3711, genomic survey sequence
Length = 573
Score = 46.1 bits (23), Expect = 0.008
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 182 ttgccaacttgcatgtattcatggtgagtaacatt 216
||||||||||| |||||||||||||| || |||||
Sbjct: 1 ttgccaacttgaatgtattcatggtgggtgacatt 35
>dbj|AG213128.1| Oryza sativa (japonica cultivar-group) DNA, clone:T00161T, 3'
flanking sequence of Tos17 insertion in rice strain
H0592, genomic survey sequence
Length = 309
Score = 46.1 bits (23), Expect = 0.008
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggtactga 23
|||||||||||||||||||||||
Sbjct: 298 gcggccgcccgggcaggtactga 276
>dbj|AG213976.1| Oryza sativa (japonica cultivar-group) DNA, clone:T11953T, 3'
flanking sequence of Tos17 insertion in rice strain
ND9058, genomic survey sequence
Length = 210
Score = 46.1 bits (23), Expect = 0.008
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggtactga 23
|||||||||||||||||||||||
Sbjct: 166 gcggccgcccgggcaggtactga 144
>gb|CW883569.1|CW883569 Rice CISP Intron:I00_X00_F_PRSC1_002_RICE_AZUC AZUC Oryza sativa
(japonica cultivar-group) genomic, DNA sequence
Length = 336
Score = 46.1 bits (23), Expect = 0.008
Identities = 47/55 (85%)
Strand = Plus / Minus
Query: 21 tgaagtagaaaccaattgttgtgtagtaacaagacagcatcctgaagaaatcaaa 75
||||||||||||||| ||| ||| |||| ||||| ||||||| ||||||||||
Sbjct: 245 tgaagtagaaaccaactgtagtgaagtatagagacaacatcctgtagaaatcaaa 191
Score = 40.1 bits (20), Expect = 0.52
Identities = 41/48 (85%)
Strand = Plus / Minus
Query: 197 tattcatggtgagtaacattgccttcgcgcaatgtggaattgaatcct 244
|||||||| ||||||||||| |||| |||| || ||||||||||||
Sbjct: 68 tattcatgatgagtaacatttccttgccgcatggttgaattgaatcct 21
>gb|AACV01001409.1| Oryza sativa (japonica cultivar-group) chromosome 1 Ctg001409, whole
genome shotgun sequence
Length = 30879
Score = 46.1 bits (23), Expect = 0.008
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 86 agccggtagatgtcacggctcagcgtttgttcgccattgccatttgc 132
||||| ||||| ||||| |||| |||||||| ||||||||||||||
Sbjct: 9842 agccgatagatatcacgactcaatgtttgttcaccattgccatttgc 9888
>ref|NM_193203.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 1809
Score = 46.1 bits (23), Expect = 0.008
Identities = 41/47 (87%)
Strand = Plus / Minus
Query: 86 agccggtagatgtcacggctcagcgtttgttcgccattgccatttgc 132
||||| ||||| ||||| |||| |||||||| ||||||||||||||
Sbjct: 317 agccgatagatatcacgactcaatgtttgttcaccattgccatttgc 271
>dbj|AG213126.1| Oryza sativa (japonica cultivar-group) DNA, clone:T00128T, 3'
flanking sequence of Tos17 insertion in rice strain
H0450, genomic survey sequence
Length = 222
Score = 44.1 bits (22), Expect = 0.034
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggtactg 22
||||||||||||||||||||||
Sbjct: 220 gcggccgcccgggcaggtactg 199
>dbj|AG024570.1| Oryza sativa (japonica cultivar-group) DNA, clone:T00181T, 3'
flanking sequence of Tos17 insertion in rice strain
H0615, genomic survey sequence
Length = 447
Score = 44.1 bits (22), Expect = 0.034
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggtactg 22
||||||||||||||||||||||
Sbjct: 439 gcggccgcccgggcaggtactg 418
>gb|CF452785.1|CF452785 EST00001 Subtracted cDNA library of JA/BTH-treated rice leaf
Oryza sativa (japonica cultivar-group) cDNA clone
JBI35, mRNA sequence
Length = 350
Score = 44.1 bits (22), Expect = 0.034
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 gcggccgcccgggcaggtactg 22
||||||||||||||||||||||
Sbjct: 6 gcggccgcccgggcaggtactg 27
>dbj|AG213037.1| Oryza sativa (japonica cultivar-group) DNA,
clone:NF9853_0_401_1A, 3' flanking sequence of Tos17
insertion in rice strain NF9853, genomic survey
sequence
Length = 626
Score = 42.1 bits (21), Expect = 0.13
Identities = 36/41 (87%)
Strand = Plus / Minus
Query: 56 agcatcctgaagaaatcaaagcgatgacctagccggtagat 96
||||| ||||||||||| ||||| || || |||||||||||
Sbjct: 43 agcattctgaagaaatcgaagcggtgtccaagccggtagat 3
>dbj|AG213548.1| Oryza sativa (japonica cultivar-group) DNA, clone:T09682T, 3'
flanking sequence of Tos17 insertion in rice strain
ND4557, genomic survey sequence
Length = 353
Score = 42.1 bits (21), Expect = 0.13
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggtact 21
|||||||||||||||||||||
Sbjct: 164 gcggccgcccgggcaggtact 144
>dbj|AG213723.1| Oryza sativa (japonica cultivar-group) DNA, clone:T10610T, 3'
flanking sequence of Tos17 insertion in rice strain
ND6065, genomic survey sequence
Length = 329
Score = 42.1 bits (21), Expect = 0.13
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggtact 21
|||||||||||||||||||||
Sbjct: 288 gcggccgcccgggcaggtact 268
>dbj|AG213908.1| Oryza sativa (japonica cultivar-group) DNA, clone:T11702T, 3'
flanking sequence of Tos17 insertion in rice strain
ND8064, genomic survey sequence
Length = 339
Score = 42.1 bits (21), Expect = 0.13
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggtact 21
|||||||||||||||||||||
Sbjct: 265 gcggccgcccgggcaggtact 245
>dbj|AG021086.1| Oryza sativa (japonica cultivar-group) DNA, clone:T00123T, 3'
flanking sequence of Tos17 insertion in rice strain
H0449, genomic survey sequence
Length = 381
Score = 42.1 bits (21), Expect = 0.13
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggtact 21
|||||||||||||||||||||
Sbjct: 373 gcggccgcccgggcaggtact 353
>dbj|AG024555.1| Oryza sativa (japonica cultivar-group) DNA, clone:T00101T, 3'
flanking sequence of Tos17 insertion in rice strain
H0388, genomic survey sequence
Length = 222
Score = 42.1 bits (21), Expect = 0.13
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggtact 21
|||||||||||||||||||||
Sbjct: 214 gcggccgcccgggcaggtact 194
>dbj|AB156800.1| Oryza sativa (japonica cultivar-group) DNA, clone:T25930T, 3'
flanking sequence of Tos17 insertion in rice strain
NF9028, genomic survey sequence
Length = 385
Score = 42.1 bits (21), Expect = 0.13
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggtact 21
|||||||||||||||||||||
Sbjct: 334 gcggccgcccgggcaggtact 314
>dbj|AB157529.1| Oryza sativa (japonica cultivar-group) DNA, clone:T28812T, 3'
flanking sequence of Tos17 insertion in rice strain
NG1017, genomic survey sequence
Length = 253
Score = 42.1 bits (21), Expect = 0.13
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggtact 21
|||||||||||||||||||||
Sbjct: 220 gcggccgcccgggcaggtact 200
>dbj|AB157563.2| Oryza sativa (japonica cultivar-group) DNA, clone:T28954T, 3'
flanking sequence of Tos17 insertion in rice strain
NG1070, genomic survey sequence
Length = 459
Score = 42.1 bits (21), Expect = 0.13
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggtact 21
|||||||||||||||||||||
Sbjct: 444 gcggccgcccgggcaggtact 424
>dbj|BA000029.3| Oryza sativa (japonica cultivar-group) mitochondrial DNA, complete genome
Length = 490520
Score = 42.1 bits (21), Expect = 0.13
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 64 gaagaaatcaaagcgatgacctagccggtagat 96
|||||| |||||||||||||| |||| ||||||
Sbjct: 300637 gaagaagtcaaagcgatgaccaagcctgtagat 300669
>dbj|AB155292.1| Oryza sativa (japonica cultivar-group) DNA, clone:T25630T, 3'
flanking sequence of Tos17 insertion in rice strain
NF8002, genomic survey sequence
Length = 485
Score = 40.1 bits (20), Expect = 0.52
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggtac 20
||||||||||||||||||||
Sbjct: 226 gcggccgcccgggcaggtac 207
>gb|CW883568.1|CW883568 Rice CISP Intron:I00_X00_F_PRSC1_001_RICE_AZUC AZUC Oryza sativa
(japonica cultivar-group) genomic, DNA sequence
Length = 155
Score = 40.1 bits (20), Expect = 0.52
Identities = 41/48 (85%)
Strand = Plus / Minus
Query: 197 tattcatggtgagtaacattgccttcgcgcaatgtggaattgaatcct 244
|||||||| ||||||||||| |||| |||| || ||||||||||||
Sbjct: 128 tattcatgatgagtaacatttccttgccgcagggttgaattgaatcct 81
>gb|CW883854.1|CW883854 Rice CISP Intron:I00_X00_F_PRSC1_001_RICE_CT99 CT99 Oryza sativa
(japonica cultivar-group) genomic, DNA sequence
Length = 142
Score = 40.1 bits (20), Expect = 0.52
Identities = 41/48 (85%)
Strand = Plus / Minus
Query: 197 tattcatggtgagtaacattgccttcgcgcaatgtggaattgaatcct 244
|||||||| ||||||||||| |||| |||| || ||||||||||||
Sbjct: 110 tattcatgatgagtaacatttccttgccgcagggttgaattgaatcct 63
>dbj|AG209278.1| Oryza sativa (japonica cultivar-group) DNA, clone:T16966T, 3'
flanking sequence of Tos17 insertion in rice strain
NE8022, genomic survey sequence
Length = 327
Score = 38.2 bits (19), Expect = 2.1
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggta 19
|||||||||||||||||||
Sbjct: 309 gcggccgcccgggcaggta 291
>dbj|AG213123.1| Oryza sativa (japonica cultivar-group) DNA, clone:T00072T, 3'
flanking sequence of Tos17 insertion in rice strain
H0268, genomic survey sequence
Length = 147
Score = 38.2 bits (19), Expect = 2.1
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggta 19
|||||||||||||||||||
Sbjct: 134 gcggccgcccgggcaggta 116
>dbj|AG213124.1| Oryza sativa (japonica cultivar-group) DNA, clone:T00091T, 3'
flanking sequence of Tos17 insertion in rice strain
H0363, genomic survey sequence
Length = 383
Score = 38.2 bits (19), Expect = 2.1
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggta 19
|||||||||||||||||||
Sbjct: 379 gcggccgcccgggcaggta 361
>dbj|AG213125.1| Oryza sativa (japonica cultivar-group) DNA, clone:T00099T, 3'
flanking sequence of Tos17 insertion in rice strain
H0388, genomic survey sequence
Length = 312
Score = 38.2 bits (19), Expect = 2.1
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggta 19
|||||||||||||||||||
Sbjct: 310 gcggccgcccgggcaggta 292
>dbj|AG213129.1| Oryza sativa (japonica cultivar-group) DNA, clone:T00163T, 3'
flanking sequence of Tos17 insertion in rice strain
H0596, genomic survey sequence
Length = 368
Score = 38.2 bits (19), Expect = 2.1
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggta 19
|||||||||||||||||||
Sbjct: 357 gcggccgcccgggcaggta 339
>dbj|AG213207.1| Oryza sativa (japonica cultivar-group) DNA, clone:T02943T, 3'
flanking sequence of Tos17 insertion in rice strain
NC0384, genomic survey sequence
Length = 280
Score = 38.2 bits (19), Expect = 2.1
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggta 19
|||||||||||||||||||
Sbjct: 262 gcggccgcccgggcaggta 244
>dbj|AG213285.1| Oryza sativa (japonica cultivar-group) DNA, clone:T06795T, 3'
flanking sequence of Tos17 insertion in rice strain
NC2764, genomic survey sequence
Length = 183
Score = 38.2 bits (19), Expect = 2.1
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggta 19
|||||||||||||||||||
Sbjct: 159 gcggccgcccgggcaggta 141
>dbj|AG213309.1| Oryza sativa (japonica cultivar-group) DNA, clone:T07737T, 3'
flanking sequence of Tos17 insertion in rice strain
ND1024, genomic survey sequence
Length = 261
Score = 38.2 bits (19), Expect = 2.1
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggta 19
|||||||||||||||||||
Sbjct: 183 gcggccgcccgggcaggta 165
>dbj|AG213581.1| Oryza sativa (japonica cultivar-group) DNA, clone:T09929T, 3'
flanking sequence of Tos17 insertion in rice strain
ND5009, genomic survey sequence
Length = 356
Score = 38.2 bits (19), Expect = 2.1
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggta 19
|||||||||||||||||||
Sbjct: 237 gcggccgcccgggcaggta 219
>dbj|AG213722.1| Oryza sativa (japonica cultivar-group) DNA, clone:T10685T, 3'
flanking sequence of Tos17 insertion in rice strain
ND7008, genomic survey sequence
Length = 218
Score = 38.2 bits (19), Expect = 2.1
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggta 19
|||||||||||||||||||
Sbjct: 201 gcggccgcccgggcaggta 183
>dbj|AG213724.1| Oryza sativa (japonica cultivar-group) DNA, clone:T10611T, 3'
flanking sequence of Tos17 insertion in rice strain
ND6066, genomic survey sequence
Length = 382
Score = 38.2 bits (19), Expect = 2.1
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggta 19
|||||||||||||||||||
Sbjct: 224 gcggccgcccgggcaggta 206
>dbj|AG213745.1| Oryza sativa (japonica cultivar-group) DNA, clone:T10782T, 3'
flanking sequence of Tos17 insertion in rice strain
ND7016, genomic survey sequence
Length = 270
Score = 38.2 bits (19), Expect = 2.1
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggta 19
|||||||||||||||||||
Sbjct: 258 gcggccgcccgggcaggta 240
>dbj|AG213872.1| Oryza sativa (japonica cultivar-group) DNA, clone:T11585T, 3'
flanking sequence of Tos17 insertion in rice strain
ND8067, genomic survey sequence
Length = 364
Score = 38.2 bits (19), Expect = 2.1
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggta 19
|||||||||||||||||||
Sbjct: 351 gcggccgcccgggcaggta 333
>dbj|AG213959.1| Oryza sativa (japonica cultivar-group) DNA, clone:T11887T, 3'
flanking sequence of Tos17 insertion in rice strain
ND9054, genomic survey sequence
Length = 274
Score = 38.2 bits (19), Expect = 2.1
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggta 19
|||||||||||||||||||
Sbjct: 246 gcggccgcccgggcaggta 228
>dbj|AG214163.1| Oryza sativa (japonica cultivar-group) DNA, clone:T12881T, 3'
flanking sequence of Tos17 insertion in rice strain
NE1501, genomic survey sequence
Length = 407
Score = 38.2 bits (19), Expect = 2.1
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggta 19
|||||||||||||||||||
Sbjct: 389 gcggccgcccgggcaggta 371
>dbj|AG214194.1| Oryza sativa (japonica cultivar-group) DNA, clone:T13036T, 3'
flanking sequence of Tos17 insertion in rice strain
NE1524, genomic survey sequence
Length = 282
Score = 38.2 bits (19), Expect = 2.1
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggta 19
|||||||||||||||||||
Sbjct: 215 gcggccgcccgggcaggta 197
>dbj|AG214478.1| Oryza sativa (japonica cultivar-group) DNA, clone:T14750T, 3'
flanking sequence of Tos17 insertion in rice strain
NE4002, genomic survey sequence
Length = 241
Score = 38.2 bits (19), Expect = 2.1
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggta 19
|||||||||||||||||||
Sbjct: 206 gcggccgcccgggcaggta 188
>dbj|AG021970.1| Oryza sativa (japonica cultivar-group) DNA, clone:T04522T, 3'
flanking sequence of Tos17 insertion in rice strain
NC0629, genomic survey sequence
Length = 358
Score = 38.2 bits (19), Expect = 2.1
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggta 19
|||||||||||||||||||
Sbjct: 331 gcggccgcccgggcaggta 313
>dbj|AG024540.1| Oryza sativa (japonica cultivar-group) DNA, clone:T00059T, 3'
flanking sequence of Tos17 insertion in rice strain
H0260, genomic survey sequence
Length = 293
Score = 38.2 bits (19), Expect = 2.1
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggta 19
|||||||||||||||||||
Sbjct: 285 gcggccgcccgggcaggta 267
>dbj|AG024553.1| Oryza sativa (japonica cultivar-group) DNA, clone:T00090T, 3'
flanking sequence of Tos17 insertion in rice strain
H0363, genomic survey sequence
Length = 296
Score = 38.2 bits (19), Expect = 2.1
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggta 19
|||||||||||||||||||
Sbjct: 294 gcggccgcccgggcaggta 276
>dbj|AG024556.1| Oryza sativa (japonica cultivar-group) DNA, clone:T00116T, 3'
flanking sequence of Tos17 insertion in rice strain
H0408, genomic survey sequence
Length = 389
Score = 38.2 bits (19), Expect = 2.1
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggta 19
|||||||||||||||||||
Sbjct: 381 gcggccgcccgggcaggta 363
>dbj|AG024559.1| Oryza sativa (japonica cultivar-group) DNA, clone:T00136T, 3'
flanking sequence of Tos17 insertion in rice strain
H0473, genomic survey sequence
Length = 397
Score = 38.2 bits (19), Expect = 2.1
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggta 19
|||||||||||||||||||
Sbjct: 389 gcggccgcccgggcaggta 371
>dbj|AG024565.1| Oryza sativa (japonica cultivar-group) DNA, clone:T00156T, 3'
flanking sequence of Tos17 insertion in rice strain
H0592, genomic survey sequence
Length = 370
Score = 38.2 bits (19), Expect = 2.1
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggta 19
|||||||||||||||||||
Sbjct: 357 gcggccgcccgggcaggta 339
>dbj|AG024785.1| Oryza sativa (japonica cultivar-group) DNA, clone:T02413T, 3'
flanking sequence of Tos17 insertion in rice strain
NC0293, genomic survey sequence
Length = 195
Score = 38.2 bits (19), Expect = 2.1
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggta 19
|||||||||||||||||||
Sbjct: 180 gcggccgcccgggcaggta 162
>dbj|AG024874.1| Oryza sativa (japonica cultivar-group) DNA, clone:T03330T, 3'
flanking sequence of Tos17 insertion in rice strain
NC0452, genomic survey sequence
Length = 308
Score = 38.2 bits (19), Expect = 2.1
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggta 19
|||||||||||||||||||
Sbjct: 260 gcggccgcccgggcaggta 242
>dbj|AG025267.1| Oryza sativa (japonica cultivar-group) DNA, clone:T06483T, 3'
flanking sequence of Tos17 insertion in rice strain
NC2721, genomic survey sequence
Length = 202
Score = 38.2 bits (19), Expect = 2.1
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggta 19
|||||||||||||||||||
Sbjct: 168 gcggccgcccgggcaggta 150
>dbj|AG025364.1| Oryza sativa (japonica cultivar-group) DNA, clone:T07096T, 3'
flanking sequence of Tos17 insertion in rice strain
ND0013, genomic survey sequence
Length = 352
Score = 38.2 bits (19), Expect = 2.1
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggta 19
|||||||||||||||||||
Sbjct: 338 gcggccgcccgggcaggta 320
>dbj|AG025393.1| Oryza sativa (japonica cultivar-group) DNA, clone:T07474T, 3'
flanking sequence of Tos17 insertion in rice strain
ND0062, genomic survey sequence
Length = 294
Score = 38.2 bits (19), Expect = 2.1
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggta 19
|||||||||||||||||||
Sbjct: 239 gcggccgcccgggcaggta 221
>dbj|AG025457.1| Oryza sativa (japonica cultivar-group) DNA, clone:T07433T, 3'
flanking sequence of Tos17 insertion in rice strain
ND0057, genomic survey sequence
Length = 208
Score = 38.2 bits (19), Expect = 2.1
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggta 19
|||||||||||||||||||
Sbjct: 189 gcggccgcccgggcaggta 171
>dbj|AG025462.1| Oryza sativa (japonica cultivar-group) DNA, clone:T07449T, 3'
flanking sequence of Tos17 insertion in rice strain
ND0059, genomic survey sequence
Length = 162
Score = 38.2 bits (19), Expect = 2.1
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggta 19
|||||||||||||||||||
Sbjct: 148 gcggccgcccgggcaggta 130
>dbj|AG025500.1| Oryza sativa (japonica cultivar-group) DNA, clone:T07886T, 3'
flanking sequence of Tos17 insertion in rice strain
ND1046, genomic survey sequence
Length = 361
Score = 38.2 bits (19), Expect = 2.1
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggta 19
|||||||||||||||||||
Sbjct: 344 gcggccgcccgggcaggta 326
>dbj|AG025544.1| Oryza sativa (japonica cultivar-group) DNA, clone:T08160T, 3'
flanking sequence of Tos17 insertion in rice strain
ND1066, genomic survey sequence
Length = 251
Score = 38.2 bits (19), Expect = 2.1
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggta 19
|||||||||||||||||||
Sbjct: 229 gcggccgcccgggcaggta 211
>dbj|AB154987.1| Oryza sativa (japonica cultivar-group) DNA, clone:T32248T, 3'
flanking sequence of Tos17 insertion in rice strain
NG4096, genomic survey sequence
Length = 501
Score = 38.2 bits (19), Expect = 2.1
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggta 19
|||||||||||||||||||
Sbjct: 485 gcggccgcccgggcaggta 467
>dbj|AB155450.1| Oryza sativa (japonica cultivar-group) DNA, clone:T18279T, 3'
flanking sequence of Tos17 insertion in rice strain
NF0044, genomic survey sequence
Length = 281
Score = 38.2 bits (19), Expect = 2.1
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggta 19
|||||||||||||||||||
Sbjct: 254 gcggccgcccgggcaggta 236
>dbj|AB155496.1| Oryza sativa (japonica cultivar-group) DNA, clone:T18491T, 3'
flanking sequence of Tos17 insertion in rice strain
NF0587, genomic survey sequence
Length = 322
Score = 38.2 bits (19), Expect = 2.1
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggta 19
|||||||||||||||||||
Sbjct: 295 gcggccgcccgggcaggta 277
>dbj|AB155981.1| Oryza sativa (japonica cultivar-group) DNA, clone:T21559T, 3'
flanking sequence of Tos17 insertion in rice strain
NF4040, genomic survey sequence
Length = 350
Score = 38.2 bits (19), Expect = 2.1
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggta 19
|||||||||||||||||||
Sbjct: 314 gcggccgcccgggcaggta 296
>dbj|AB156010.1| Oryza sativa (japonica cultivar-group) DNA, clone:T21724T, 3'
flanking sequence of Tos17 insertion in rice strain
NF4864, genomic survey sequence
Length = 188
Score = 38.2 bits (19), Expect = 2.1
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggta 19
|||||||||||||||||||
Sbjct: 185 gcggccgcccgggcaggta 167
>dbj|AB156159.1| Oryza sativa (japonica cultivar-group) DNA, clone:T22679T, 3'
flanking sequence of Tos17 insertion in rice strain
NF6025, genomic survey sequence
Length = 298
Score = 38.2 bits (19), Expect = 2.1
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggta 19
|||||||||||||||||||
Sbjct: 262 gcggccgcccgggcaggta 244
>dbj|AB156243.1| Oryza sativa (japonica cultivar-group) DNA, clone:T24770T, 3'
flanking sequence of Tos17 insertion in rice strain
NF7820, genomic survey sequence
Length = 384
Score = 38.2 bits (19), Expect = 2.1
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggta 19
|||||||||||||||||||
Sbjct: 258 gcggccgcccgggcaggta 240
>dbj|AB156331.1| Oryza sativa (japonica cultivar-group) DNA, clone:T23477T, 3'
flanking sequence of Tos17 insertion in rice strain
NF7016, genomic survey sequence
Length = 277
Score = 38.2 bits (19), Expect = 2.1
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggta 19
|||||||||||||||||||
Sbjct: 266 gcggccgcccgggcaggta 248
>dbj|AB156464.1| Oryza sativa (japonica cultivar-group) DNA, clone:T26622T, 3'
flanking sequence of Tos17 insertion in rice strain
NF9879, genomic survey sequence
Length = 247
Score = 38.2 bits (19), Expect = 2.1
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggta 19
|||||||||||||||||||
Sbjct: 244 gcggccgcccgggcaggta 226
>dbj|AB156769.1| Oryza sativa (japonica cultivar-group) DNA, clone:T25757T, 3'
flanking sequence of Tos17 insertion in rice strain
NF9013, genomic survey sequence
Length = 304
Score = 38.2 bits (19), Expect = 2.1
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggta 19
|||||||||||||||||||
Sbjct: 304 gcggccgcccgggcaggta 286
>dbj|AB156809.1| Oryza sativa (japonica cultivar-group) DNA, clone:T25957T, 3'
flanking sequence of Tos17 insertion in rice strain
NF9037, genomic survey sequence
Length = 480
Score = 38.2 bits (19), Expect = 2.1
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggta 19
|||||||||||||||||||
Sbjct: 474 gcggccgcccgggcaggta 456
>dbj|AB156813.1| Oryza sativa (japonica cultivar-group) DNA, clone:T25985T, 3'
flanking sequence of Tos17 insertion in rice strain
NF9041, genomic survey sequence
Length = 382
Score = 38.2 bits (19), Expect = 2.1
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggta 19
|||||||||||||||||||
Sbjct: 372 gcggccgcccgggcaggta 354
>dbj|AB156889.1| Oryza sativa (japonica cultivar-group) DNA, clone:T26382T, 3'
flanking sequence of Tos17 insertion in rice strain
NF9874, genomic survey sequence
Length = 436
Score = 38.2 bits (19), Expect = 2.1
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggta 19
|||||||||||||||||||
Sbjct: 421 gcggccgcccgggcaggta 403
>dbj|AB156947.1| Oryza sativa (japonica cultivar-group) DNA, clone:T26587T, 3'
flanking sequence of Tos17 insertion in rice strain
NG0044, genomic survey sequence
Length = 255
Score = 38.2 bits (19), Expect = 2.1
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggta 19
|||||||||||||||||||
Sbjct: 254 gcggccgcccgggcaggta 236
>dbj|AB157011.1| Oryza sativa (japonica cultivar-group) DNA, clone:T26861T, 3'
flanking sequence of Tos17 insertion in rice strain
NG0066, genomic survey sequence
Length = 267
Score = 38.2 bits (19), Expect = 2.1
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggta 19
|||||||||||||||||||
Sbjct: 252 gcggccgcccgggcaggta 234
>dbj|AB157065.1| Oryza sativa (japonica cultivar-group) DNA, clone:T27690T, 3'
flanking sequence of Tos17 insertion in rice strain
NG0511, genomic survey sequence
Length = 322
Score = 38.2 bits (19), Expect = 2.1
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggta 19
|||||||||||||||||||
Sbjct: 313 gcggccgcccgggcaggta 295
>dbj|AB157080.1| Oryza sativa (japonica cultivar-group) DNA, clone:T27153T, 3'
flanking sequence of Tos17 insertion in rice strain
NG0532, genomic survey sequence
Length = 319
Score = 38.2 bits (19), Expect = 2.1
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggta 19
|||||||||||||||||||
Sbjct: 313 gcggccgcccgggcaggta 295
>dbj|AB157086.1| Oryza sativa (japonica cultivar-group) DNA, clone:T27161T, 3'
flanking sequence of Tos17 insertion in rice strain
NG0534, genomic survey sequence
Length = 497
Score = 38.2 bits (19), Expect = 2.1
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggta 19
|||||||||||||||||||
Sbjct: 482 gcggccgcccgggcaggta 464
>dbj|AB157316.1| Oryza sativa (japonica cultivar-group) DNA, clone:T28074T, 3'
flanking sequence of Tos17 insertion in rice strain
NG0585, genomic survey sequence
Length = 178
Score = 38.2 bits (19), Expect = 2.1
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggta 19
|||||||||||||||||||
Sbjct: 178 gcggccgcccgggcaggta 160
>dbj|AB157330.1| Oryza sativa (japonica cultivar-group) DNA, clone:T29235T, 3'
flanking sequence of Tos17 insertion in rice strain
NG2016, genomic survey sequence
Length = 249
Score = 38.2 bits (19), Expect = 2.1
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggta 19
|||||||||||||||||||
Sbjct: 242 gcggccgcccgggcaggta 224
>dbj|AB157360.1| Oryza sativa (japonica cultivar-group) DNA, clone:T28226T, 3'
flanking sequence of Tos17 insertion in rice strain
NG1009, genomic survey sequence
Length = 319
Score = 38.2 bits (19), Expect = 2.1
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggta 19
|||||||||||||||||||
Sbjct: 316 gcggccgcccgggcaggta 298
>dbj|AB157374.1| Oryza sativa (japonica cultivar-group) DNA, clone:T28262T, 3'
flanking sequence of Tos17 insertion in rice strain
NG1029, genomic survey sequence
Length = 425
Score = 38.2 bits (19), Expect = 2.1
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggta 19
|||||||||||||||||||
Sbjct: 423 gcggccgcccgggcaggta 405
>dbj|AB157397.1| Oryza sativa (japonica cultivar-group) DNA, clone:T29778T, 3'
flanking sequence of Tos17 insertion in rice strain
NG2014, genomic survey sequence
Length = 369
Score = 38.2 bits (19), Expect = 2.1
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggta 19
|||||||||||||||||||
Sbjct: 367 gcggccgcccgggcaggta 349
>dbj|AB157398.1| Oryza sativa (japonica cultivar-group) DNA, clone:T28341T, 3'
flanking sequence of Tos17 insertion in rice strain
NG1048, genomic survey sequence
Length = 344
Score = 38.2 bits (19), Expect = 2.1
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggta 19
|||||||||||||||||||
Sbjct: 338 gcggccgcccgggcaggta 320
>dbj|AB157411.1| Oryza sativa (japonica cultivar-group) DNA, clone:T28379T, 3'
flanking sequence of Tos17 insertion in rice strain
NG1058, genomic survey sequence
Length = 283
Score = 38.2 bits (19), Expect = 2.1
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggta 19
|||||||||||||||||||
Sbjct: 268 gcggccgcccgggcaggta 250
>dbj|AB157416.1| Oryza sativa (japonica cultivar-group) DNA, clone:T28390T, 3'
flanking sequence of Tos17 insertion in rice strain
NG1060, genomic survey sequence
Length = 230
Score = 38.2 bits (19), Expect = 2.1
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggta 19
|||||||||||||||||||
Sbjct: 225 gcggccgcccgggcaggta 207
>dbj|AB157423.1| Oryza sativa (japonica cultivar-group) DNA, clone:T28425T, 3'
flanking sequence of Tos17 insertion in rice strain
NG1050, genomic survey sequence
Length = 485
Score = 38.2 bits (19), Expect = 2.1
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggta 19
|||||||||||||||||||
Sbjct: 480 gcggccgcccgggcaggta 462
>dbj|AB157497.1| Oryza sativa (japonica cultivar-group) DNA, clone:T28710T, 3'
flanking sequence of Tos17 insertion in rice strain
NG1092, genomic survey sequence
Length = 288
Score = 38.2 bits (19), Expect = 2.1
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggta 19
|||||||||||||||||||
Sbjct: 274 gcggccgcccgggcaggta 256
>dbj|AB157587.1| Oryza sativa (japonica cultivar-group) DNA, clone:T29053T, 3'
flanking sequence of Tos17 insertion in rice strain
NG1536, genomic survey sequence
Length = 289
Score = 38.2 bits (19), Expect = 2.1
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggta 19
|||||||||||||||||||
Sbjct: 279 gcggccgcccgggcaggta 261
>dbj|AB157628.1| Oryza sativa (japonica cultivar-group) DNA, clone:T29185T, 3'
flanking sequence of Tos17 insertion in rice strain
NG1592, genomic survey sequence
Length = 359
Score = 38.2 bits (19), Expect = 2.1
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggta 19
|||||||||||||||||||
Sbjct: 347 gcggccgcccgggcaggta 329
>dbj|AB157668.1| Oryza sativa (japonica cultivar-group) DNA, clone:T29387T, 3'
flanking sequence of Tos17 insertion in rice strain
NG1573, genomic survey sequence
Length = 255
Score = 38.2 bits (19), Expect = 2.1
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggta 19
|||||||||||||||||||
Sbjct: 201 gcggccgcccgggcaggta 183
>dbj|AB157705.1| Oryza sativa (japonica cultivar-group) DNA, clone:T29441T, 3'
flanking sequence of Tos17 insertion in rice strain
NG2073, genomic survey sequence
Length = 245
Score = 38.2 bits (19), Expect = 2.1
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggta 19
|||||||||||||||||||
Sbjct: 233 gcggccgcccgggcaggta 215
>dbj|AB157764.1| Oryza sativa (japonica cultivar-group) DNA, clone:T32495T, 3'
flanking sequence of Tos17 insertion in rice strain
NG4589, genomic survey sequence
Length = 246
Score = 38.2 bits (19), Expect = 2.1
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggta 19
|||||||||||||||||||
Sbjct: 230 gcggccgcccgggcaggta 212
>dbj|AB157771.1| Oryza sativa (japonica cultivar-group) DNA, clone:T29758T, 3'
flanking sequence of Tos17 insertion in rice strain
NG2091, genomic survey sequence
Length = 197
Score = 38.2 bits (19), Expect = 2.1
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggta 19
|||||||||||||||||||
Sbjct: 195 gcggccgcccgggcaggta 177
>dbj|AB158032.1| Oryza sativa (japonica cultivar-group) DNA, clone:T30837T, 3'
flanking sequence of Tos17 insertion in rice strain
NG3078, genomic survey sequence
Length = 222
Score = 38.2 bits (19), Expect = 2.1
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggta 19
|||||||||||||||||||
Sbjct: 215 gcggccgcccgggcaggta 197
>dbj|AG024547.2| Oryza sativa (japonica cultivar-group) DNA, clone:T00078T, 3'
flanking sequence of Tos17 insertion in rice strain
H0259, genomic survey sequence
Length = 228
Score = 38.2 bits (19), Expect = 2.1
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggta 19
|||||||||||||||||||
Sbjct: 226 gcggccgcccgggcaggta 208
>dbj|AB155376.2| Oryza sativa (japonica cultivar-group) DNA, clone:T29596T, 3'
flanking sequence of Tos17 insertion in rice strain
NG2016, genomic survey sequence
Length = 285
Score = 38.2 bits (19), Expect = 2.1
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggta 19
|||||||||||||||||||
Sbjct: 272 gcggccgcccgggcaggta 254
>dbj|AB156990.2| Oryza sativa (japonica cultivar-group) DNA, clone:T26779T, 3'
flanking sequence of Tos17 insertion in rice strain
NG0067, genomic survey sequence
Length = 324
Score = 38.2 bits (19), Expect = 2.1
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggta 19
|||||||||||||||||||
Sbjct: 305 gcggccgcccgggcaggta 287
>dbj|AB157415.2| Oryza sativa (japonica cultivar-group) DNA, clone:T28389T, 3'
flanking sequence of Tos17 insertion in rice strain
NG1060, genomic survey sequence
Length = 302
Score = 38.2 bits (19), Expect = 2.1
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggta 19
|||||||||||||||||||
Sbjct: 286 gcggccgcccgggcaggta 268
>dbj|AB157466.2| Oryza sativa (japonica cultivar-group) DNA, clone:T29526T, 3'
flanking sequence of Tos17 insertion in rice strain
NG1078, genomic survey sequence
Length = 483
Score = 38.2 bits (19), Expect = 2.1
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggta 19
|||||||||||||||||||
Sbjct: 468 gcggccgcccgggcaggta 450
>dbj|AB157571.2| Oryza sativa (japonica cultivar-group) DNA, clone:T29015T, 3'
flanking sequence of Tos17 insertion in rice strain
NG1517, genomic survey sequence
Length = 487
Score = 38.2 bits (19), Expect = 2.1
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggta 19
|||||||||||||||||||
Sbjct: 485 gcggccgcccgggcaggta 467
>gb|DU711782.1|DU711782 LW1258_TT57-38-1 CSIROPIFGRTT_DSTDNA_B2 Oryza sativa (japonica
cultivar-group) genomic clone Trgw2097 similar to Maps
to AP005537 (OSJNBa0056L09) chr08 72.2cM, DNA sequence
Length = 393
Score = 38.2 bits (19), Expect = 2.1
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggta 19
|||||||||||||||||||
Sbjct: 379 gcggccgcccgggcaggta 361
>gb|DU711787.1|DU711787 LW1185_TT41-340-1-4 CSIROPIFGRTT_DSTDNA_B2 Oryza sativa (japonica
cultivar-group) genomic clone T1gw2292-1 similar to Maps
to AC107085 (OJ1764_D01) chr05, DNA sequence
Length = 134
Score = 38.2 bits (19), Expect = 2.1
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggta 19
|||||||||||||||||||
Sbjct: 116 gcggccgcccgggcaggta 98
>gb|AACV01012890.1| Oryza sativa (japonica cultivar-group) chromosome 6 Ctg012890, whole
genome shotgun sequence
Length = 42827
Score = 38.2 bits (19), Expect = 2.1
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 24 agtagaaaccaattgttgt 42
|||||||||||||||||||
Sbjct: 28194 agtagaaaccaattgttgt 28176
>dbj|AP002837.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
clone:OSJNBa0019F11
Length = 123673
Score = 38.2 bits (19), Expect = 2.1
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 24 agtagaaaccaattgttgt 42
|||||||||||||||||||
Sbjct: 2682 agtagaaaccaattgttgt 2700
>dbj|AP001389.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
clone:P0541H01
Length = 157519
Score = 38.2 bits (19), Expect = 2.1
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 24 agtagaaaccaattgttgt 42
|||||||||||||||||||
Sbjct: 104921 agtagaaaccaattgttgt 104939
>ref|NT_107230.2| Oryza sativa (japonica cultivar-group)
Length = 2805126
Score = 38.2 bits (19), Expect = 2.1
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 24 agtagaaaccaattgttgt 42
|||||||||||||||||||
Sbjct: 785364 agtagaaaccaattgttgt 785382
>gb|AQ864492.1|AQ864492 nbeb0023K07f CUGI Rice BAC Library (EcoRI) Oryza sativa (japonica
cultivar-group) genomic clone nbeb0023K07f, DNA
sequence
Length = 751
Score = 36.2 bits (18), Expect = 8.2
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 39 ttgtgtagtaacaagaca 56
||||||||||||||||||
Sbjct: 87 ttgtgtagtaacaagaca 70
>gb|AQ445903.2|AQ445903 nbxb0056L22f CUGI Rice BAC Library Oryza sativa (japonica
cultivar-group) genomic clone nbxb0056L22f, DNA sequence
Length = 292
Score = 36.2 bits (18), Expect = 8.2
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 27 agaaaccaattgttgtgtagta 48
||||||||||||||||| ||||
Sbjct: 201 agaaaccaattgttgtgaagta 222
>dbj|AG208353.1| Oryza sativa (japonica cultivar-group) DNA, clone:T13786T, 3'
flanking sequence of Tos17 insertion in rice strain
NE3002, genomic survey sequence
Length = 417
Score = 36.2 bits (18), Expect = 8.2
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggt 18
||||||||||||||||||
Sbjct: 402 gcggccgcccgggcaggt 385
>dbj|AG213213.1| Oryza sativa (japonica cultivar-group) DNA, clone:T03365T, 3'
flanking sequence of Tos17 insertion in rice strain
NC0457, genomic survey sequence
Length = 281
Score = 36.2 bits (18), Expect = 8.2
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 2 cggccgcccgggcaggta 19
||||||||||||||||||
Sbjct: 241 cggccgcccgggcaggta 224
>dbj|AG213230.1| Oryza sativa (japonica cultivar-group) DNA, clone:T04187T, 3'
flanking sequence of Tos17 insertion in rice strain
NC0588, genomic survey sequence
Length = 285
Score = 36.2 bits (18), Expect = 8.2
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggt 18
||||||||||||||||||
Sbjct: 261 gcggccgcccgggcaggt 244
>dbj|AG213596.1| Oryza sativa (japonica cultivar-group) DNA, clone:T09960T, 3'
flanking sequence of Tos17 insertion in rice strain
ND5012, genomic survey sequence
Length = 228
Score = 36.2 bits (18), Expect = 8.2
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 2 cggccgcccgggcaggta 19
||||||||||||||||||
Sbjct: 154 cggccgcccgggcaggta 137
>dbj|AG214653.1| Oryza sativa (japonica cultivar-group) DNA, clone:T15682T, 3'
flanking sequence of Tos17 insertion in rice strain
NE4546, genomic survey sequence
Length = 201
Score = 36.2 bits (18), Expect = 8.2
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 2 cggccgcccgggcaggta 19
||||||||||||||||||
Sbjct: 184 cggccgcccgggcaggta 167
>dbj|AG214922.1| Oryza sativa (japonica cultivar-group) DNA, clone:T17224T, 3'
flanking sequence of Tos17 insertion in rice strain
NE8519, genomic survey sequence
Length = 386
Score = 36.2 bits (18), Expect = 8.2
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 2 cggccgcccgggcaggta 19
||||||||||||||||||
Sbjct: 319 cggccgcccgggcaggta 302
>dbj|AG024839.1| Oryza sativa (japonica cultivar-group) DNA, clone:T02953T, 3'
flanking sequence of Tos17 insertion in rice strain
NC0385, genomic survey sequence
Length = 117
Score = 36.2 bits (18), Expect = 8.2
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 2 cggccgcccgggcaggta 19
||||||||||||||||||
Sbjct: 98 cggccgcccgggcaggta 81
>dbj|AG024869.1| Oryza sativa (japonica cultivar-group) DNA, clone:T03287T, 3'
flanking sequence of Tos17 insertion in rice strain
NC0446, genomic survey sequence
Length = 257
Score = 36.2 bits (18), Expect = 8.2
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 2 cggccgcccgggcaggta 19
||||||||||||||||||
Sbjct: 249 cggccgcccgggcaggta 232
>dbj|AG025018.1| Oryza sativa (japonica cultivar-group) DNA, clone:T04391T, 3'
flanking sequence of Tos17 insertion in rice strain
NC0610, genomic survey sequence
Length = 335
Score = 36.2 bits (18), Expect = 8.2
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 2 cggccgcccgggcaggta 19
||||||||||||||||||
Sbjct: 317 cggccgcccgggcaggta 300
>dbj|AG025160.1| Oryza sativa (japonica cultivar-group) DNA, clone:T05582T, 3'
flanking sequence of Tos17 insertion in rice strain
NC2585, genomic survey sequence
Length = 279
Score = 36.2 bits (18), Expect = 8.2
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 2 cggccgcccgggcaggta 19
||||||||||||||||||
Sbjct: 149 cggccgcccgggcaggta 132
>dbj|AG025312.1| Oryza sativa (japonica cultivar-group) DNA, clone:T06717T, 3'
flanking sequence of Tos17 insertion in rice strain
NC2751, genomic survey sequence
Length = 462
Score = 36.2 bits (18), Expect = 8.2
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 2 cggccgcccgggcaggta 19
||||||||||||||||||
Sbjct: 429 cggccgcccgggcaggta 412
>dbj|AG025396.1| Oryza sativa (japonica cultivar-group) DNA, clone:T07233T, 3'
flanking sequence of Tos17 insertion in rice strain
ND0032, genomic survey sequence
Length = 269
Score = 36.2 bits (18), Expect = 8.2
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 2 cggccgcccgggcaggta 19
||||||||||||||||||
Sbjct: 166 cggccgcccgggcaggta 149
>dbj|AG205322.1| Oryza sativa (japonica cultivar-group) DNA, clone:T02902T, 3'
flanking sequence of Tos17 insertion in rice strain
NC0376, genomic survey sequence
Length = 313
Score = 36.2 bits (18), Expect = 8.2
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggt 18
||||||||||||||||||
Sbjct: 126 gcggccgcccgggcaggt 109
>dbj|AB154905.1| Oryza sativa (japonica cultivar-group) DNA, clone:T19071T, 3'
flanking sequence of Tos17 insertion in rice strain
NF1035, genomic survey sequence
Length = 254
Score = 36.2 bits (18), Expect = 8.2
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggt 18
||||||||||||||||||
Sbjct: 226 gcggccgcccgggcaggt 209
>dbj|AB155607.1| Oryza sativa (japonica cultivar-group) DNA, clone:T19077T, 3'
flanking sequence of Tos17 insertion in rice strain
NF1035, genomic survey sequence
Length = 417
Score = 36.2 bits (18), Expect = 8.2
Identities = 20/21 (95%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggtact 21
||||||||||||||| |||||
Sbjct: 379 gcggccgcccgggcangtact 359
>dbj|AB155730.1| Oryza sativa (japonica cultivar-group) DNA, clone:T26877T, 3'
flanking sequence of Tos17 insertion in rice strain
NG0069, genomic survey sequence
Length = 323
Score = 36.2 bits (18), Expect = 8.2
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 2 cggccgcccgggcaggta 19
||||||||||||||||||
Sbjct: 323 cggccgcccgggcaggta 306
>dbj|AB155884.1| Oryza sativa (japonica cultivar-group) DNA, clone:T21108T, 3'
flanking sequence of Tos17 insertion in rice strain
NF3739, genomic survey sequence
Length = 332
Score = 36.2 bits (18), Expect = 8.2
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggt 18
||||||||||||||||||
Sbjct: 318 gcggccgcccgggcaggt 301
>dbj|AB155930.1| Oryza sativa (japonica cultivar-group) DNA, clone:T21344T, 3'
flanking sequence of Tos17 insertion in rice strain
NF4014, genomic survey sequence
Length = 390
Score = 36.2 bits (18), Expect = 8.2
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggt 18
||||||||||||||||||
Sbjct: 368 gcggccgcccgggcaggt 351
>dbj|AB156823.1| Oryza sativa (japonica cultivar-group) DNA, clone:T26022T, 3'
flanking sequence of Tos17 insertion in rice strain
NF9835, genomic survey sequence
Length = 304
Score = 36.2 bits (18), Expect = 8.2
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 2 cggccgcccgggcaggta 19
||||||||||||||||||
Sbjct: 304 cggccgcccgggcaggta 287
>dbj|AB156853.1| Oryza sativa (japonica cultivar-group) DNA, clone:T27709T, 3'
flanking sequence of Tos17 insertion in rice strain
NG0529, genomic survey sequence
Length = 290
Score = 36.2 bits (18), Expect = 8.2
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 2 cggccgcccgggcaggta 19
||||||||||||||||||
Sbjct: 290 cggccgcccgggcaggta 273
>dbj|AB157206.1| Oryza sativa (japonica cultivar-group) DNA, clone:T27750T, 3'
flanking sequence of Tos17 insertion in rice strain
NG0545, genomic survey sequence
Length = 344
Score = 36.2 bits (18), Expect = 8.2
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggt 18
||||||||||||||||||
Sbjct: 328 gcggccgcccgggcaggt 311
>dbj|AB157268.1| Oryza sativa (japonica cultivar-group) DNA, clone:T40226T, 3'
flanking sequence of Tos17 insertion in rice strain
NG0369, genomic survey sequence
Length = 492
Score = 36.2 bits (18), Expect = 8.2
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggt 18
||||||||||||||||||
Sbjct: 483 gcggccgcccgggcaggt 466
>dbj|AB157275.1| Oryza sativa (japonica cultivar-group) DNA, clone:T27966T, 3'
flanking sequence of Tos17 insertion in rice strain
NG0587, genomic survey sequence
Length = 359
Score = 36.2 bits (18), Expect = 8.2
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggt 18
||||||||||||||||||
Sbjct: 344 gcggccgcccgggcaggt 327
>dbj|AB157293.1| Oryza sativa (japonica cultivar-group) DNA, clone:T28013T, 3'
flanking sequence of Tos17 insertion in rice strain
NG0562, genomic survey sequence
Length = 383
Score = 36.2 bits (18), Expect = 8.2
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 2 cggccgcccgggcaggta 19
||||||||||||||||||
Sbjct: 371 cggccgcccgggcaggta 354
>dbj|AB157312.1| Oryza sativa (japonica cultivar-group) DNA, clone:T28066T, 3'
flanking sequence of Tos17 insertion in rice strain
NG0583, genomic survey sequence
Length = 260
Score = 36.2 bits (18), Expect = 8.2
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 2 cggccgcccgggcaggta 19
||||||||||||||||||
Sbjct: 260 cggccgcccgggcaggta 243
>dbj|AB157349.1| Oryza sativa (japonica cultivar-group) DNA, clone:T28189T, 3'
flanking sequence of Tos17 insertion in rice strain
NG1034, genomic survey sequence
Length = 364
Score = 36.2 bits (18), Expect = 8.2
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 2 cggccgcccgggcaggta 19
||||||||||||||||||
Sbjct: 364 cggccgcccgggcaggta 347
>dbj|AB157401.1| Oryza sativa (japonica cultivar-group) DNA, clone:T28347T, 3'
flanking sequence of Tos17 insertion in rice strain
NG1049, genomic survey sequence
Length = 383
Score = 36.2 bits (18), Expect = 8.2
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 2 cggccgcccgggcaggta 19
||||||||||||||||||
Sbjct: 371 cggccgcccgggcaggta 354
>dbj|AB157472.1| Oryza sativa (japonica cultivar-group) DNA, clone:T28623T, 3'
flanking sequence of Tos17 insertion in rice strain
NG1085, genomic survey sequence
Length = 258
Score = 36.2 bits (18), Expect = 8.2
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 2 cggccgcccgggcaggta 19
||||||||||||||||||
Sbjct: 258 cggccgcccgggcaggta 241
>dbj|AB157543.1| Oryza sativa (japonica cultivar-group) DNA, clone:T28859T, 3'
flanking sequence of Tos17 insertion in rice strain
NG1030, genomic survey sequence
Length = 308
Score = 36.2 bits (18), Expect = 8.2
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggt 18
||||||||||||||||||
Sbjct: 298 gcggccgcccgggcaggt 281
>dbj|AB157663.1| Oryza sativa (japonica cultivar-group) DNA, clone:T29284T, 3'
flanking sequence of Tos17 insertion in rice strain
NG2045, genomic survey sequence
Length = 260
Score = 36.2 bits (18), Expect = 8.2
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 2 cggccgcccgggcaggta 19
||||||||||||||||||
Sbjct: 177 cggccgcccgggcaggta 160
>dbj|AB157722.1| Oryza sativa (japonica cultivar-group) DNA, clone:T29520T, 3'
flanking sequence of Tos17 insertion in rice strain
NG1076, genomic survey sequence
Length = 390
Score = 36.2 bits (18), Expect = 8.2
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggt 18
||||||||||||||||||
Sbjct: 390 gcggccgcccgggcaggt 373
>dbj|AB157724.1| Oryza sativa (japonica cultivar-group) DNA, clone:T29522T, 3'
flanking sequence of Tos17 insertion in rice strain
NG1076, genomic survey sequence
Length = 298
Score = 36.2 bits (18), Expect = 8.2
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggt 18
||||||||||||||||||
Sbjct: 292 gcggccgcccgggcaggt 275
>dbj|AB157742.1| Oryza sativa (japonica cultivar-group) DNA, clone:T29626T, 3'
flanking sequence of Tos17 insertion in rice strain
NG2029, genomic survey sequence
Length = 327
Score = 36.2 bits (18), Expect = 8.2
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggt 18
||||||||||||||||||
Sbjct: 308 gcggccgcccgggcaggt 291
>dbj|AB157751.1| Oryza sativa (japonica cultivar-group) DNA, clone:T29677T, 3'
flanking sequence of Tos17 insertion in rice strain
NG2054, genomic survey sequence
Length = 384
Score = 36.2 bits (18), Expect = 8.2
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 2 cggccgcccgggcaggta 19
||||||||||||||||||
Sbjct: 382 cggccgcccgggcaggta 365
>dbj|AB157787.1| Oryza sativa (japonica cultivar-group) DNA, clone:T29818T, 3'
flanking sequence of Tos17 insertion in rice strain
NG1596, genomic survey sequence
Length = 387
Score = 36.2 bits (18), Expect = 8.2
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggt 18
||||||||||||||||||
Sbjct: 371 gcggccgcccgggcaggt 354
>dbj|AB157054.2| Oryza sativa (japonica cultivar-group) DNA, clone:T27064T, 3'
flanking sequence of Tos17 insertion in rice strain
NG0092, genomic survey sequence
Length = 355
Score = 36.2 bits (18), Expect = 8.2
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 2 cggccgcccgggcaggta 19
||||||||||||||||||
Sbjct: 355 cggccgcccgggcaggta 338
>dbj|AB157740.2| Oryza sativa (japonica cultivar-group) DNA, clone:T29614T, 3'
flanking sequence of Tos17 insertion in rice strain
NG2026, genomic survey sequence
Length = 333
Score = 36.2 bits (18), Expect = 8.2
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 2 cggccgcccgggcaggta 19
||||||||||||||||||
Sbjct: 302 cggccgcccgggcaggta 285
>dbj|AB158052.2| Oryza sativa (japonica cultivar-group) DNA, clone:T31593T, 3'
flanking sequence of Tos17 insertion in rice strain
NG3080, genomic survey sequence
Length = 483
Score = 36.2 bits (18), Expect = 8.2
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggt 18
||||||||||||||||||
Sbjct: 461 gcggccgcccgggcaggt 444
>gb|DU711657.1|DU711657 LW1226_TT42-25-1-4 CSIROPIFGRTT_DSTDNA_B1 Oryza sativa (japonica
cultivar-group) genomic clone T1gw3064-1 similar to
AP003761 (P0018H04) chr06 117.0-119.2cM, DNA sequence
Length = 155
Score = 36.2 bits (18), Expect = 8.2
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggt 18
||||||||||||||||||
Sbjct: 143 gcggccgcccgggcaggt 126
>gb|D15699.1|D15699 RICC1115A Rice callus Oryza sativa (japonica cultivar-group) cDNA
clone C1115_11A, mRNA sequence
Length = 332
Score = 36.2 bits (18), Expect = 8.2
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 27 agaaaccaattgttgtgtagta 48
||||||||||||||||| ||||
Sbjct: 6 agaaaccaattgttgtgaagta 27
>gb|AU064380.2|AU064380 AU064380 Rice panicle shorter than 3cm Oryza sativa (japonica
cultivar-group) cDNA clone E30424_1A, mRNA sequence
Length = 352
Score = 36.2 bits (18), Expect = 8.2
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 27 agaaaccaattgttgtgtagta 48
||||||||||||||||| ||||
Sbjct: 108 agaaaccaattgttgtgaagta 129
>gb|AU093576.1|AU093576 AU093576 Rice callus Oryza sativa (japonica cultivar-group) cDNA
clone C52754, mRNA sequence
Length = 708
Score = 36.2 bits (18), Expect = 8.2
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 27 agaaaccaattgttgtgtagta 48
||||||||||||||||| ||||
Sbjct: 127 agaaaccaattgttgtgaagta 148
>gb|AU096266.1|AU096266 AU096266 Rice green shoot Oryza sativa (japonica cultivar-group)
cDNA clone S13140, mRNA sequence
Length = 710
Score = 36.2 bits (18), Expect = 8.2
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 27 agaaaccaattgttgtgtagta 48
||||||||||||||||| ||||
Sbjct: 127 agaaaccaattgttgtgaagta 148
>gb|AU096330.1|AU096330 AU096330 Rice green shoot Oryza sativa (japonica cultivar-group)
cDNA clone S13503, mRNA sequence
Length = 712
Score = 36.2 bits (18), Expect = 8.2
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 27 agaaaccaattgttgtgtagta 48
||||||||||||||||| ||||
Sbjct: 129 agaaaccaattgttgtgaagta 150
>gb|AU165983.1|AU165983 AU165983 Rice panicle shorter than 3cm Oryza sativa (japonica
cultivar-group) cDNA clone E30424, mRNA sequence
Length = 710
Score = 36.2 bits (18), Expect = 8.2
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 27 agaaaccaattgttgtgtagta 48
||||||||||||||||| ||||
Sbjct: 117 agaaaccaattgttgtgaagta 138
>gb|BF889487.1|BF889487 EST056 Subtracted cDNA library of JA/BTH-treated rice leaf Oryza
sativa (japonica cultivar-group) cDNA clone JBI34, mRNA
sequence
Length = 294
Score = 36.2 bits (18), Expect = 8.2
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggt 18
||||||||||||||||||
Sbjct: 262 gcggccgcccgggcaggt 245
>gb|CB643990.1|CB643990 OSJNEb04P24.f OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb04P24 5', mRNA sequence
Length = 783
Score = 36.2 bits (18), Expect = 8.2
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 27 agaaaccaattgttgtgtagta 48
||||||||||||||||| ||||
Sbjct: 439 agaaaccaattgttgtgaagta 460
>gb|CB643991.1|CB643991 OSJNEb04P24.r OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb04P24 3', mRNA sequence
Length = 824
Score = 36.2 bits (18), Expect = 8.2
Identities = 21/22 (95%)
Strand = Plus / Minus
Query: 27 agaaaccaattgttgtgtagta 48
||||||||||||||||| ||||
Sbjct: 623 agaaaccaattgttgtgaagta 602
>gb|CF325511.1|CF325511 JMT1--03-G24.g1 AtJMT-overexpressing transgenic rice lambda phage
cDNA library (JMT1) Oryza sativa (japonica
cultivar-group) cDNA clone JMT1--03-G24, mRNA sequence
Length = 503
Score = 36.2 bits (18), Expect = 8.2
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 27 agaaaccaattgttgtgtagta 48
||||||||||||||||| ||||
Sbjct: 151 agaaaccaattgttgtgaagta 172
>gb|CF325725.1|CF325725 JMT1--04-A05.g1 AtJMT-overexpressing transgenic rice lambda phage
cDNA library (JMT1) Oryza sativa (japonica
cultivar-group) cDNA clone JMT1--04-A05, mRNA sequence
Length = 641
Score = 36.2 bits (18), Expect = 8.2
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 27 agaaaccaattgttgtgtagta 48
||||||||||||||||| ||||
Sbjct: 158 agaaaccaattgttgtgaagta 179
>gb|CF325986.1|CF325986 JMT1--04-M17.g1 AtJMT-overexpressing transgenic rice lambda phage
cDNA library (JMT1) Oryza sativa (japonica
cultivar-group) cDNA clone JMT1--04-M17, mRNA sequence
Length = 652
Score = 36.2 bits (18), Expect = 8.2
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 27 agaaaccaattgttgtgtagta 48
||||||||||||||||| ||||
Sbjct: 151 agaaaccaattgttgtgaagta 172
>gb|CF326180.1|CF326180 JMT1--05-F05.g1 AtJMT-overexpressing transgenic rice lambda phage
cDNA library (JMT1) Oryza sativa (japonica
cultivar-group) cDNA clone JMT1--05-F05, mRNA sequence
Length = 583
Score = 36.2 bits (18), Expect = 8.2
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 27 agaaaccaattgttgtgtagta 48
||||||||||||||||| ||||
Sbjct: 151 agaaaccaattgttgtgaagta 172
>gb|CO436037.1|CO436037 OsMR959 5MT resistant rice mutant cDNA library Oryza sativa
(japonica cultivar-group) cDNA, mRNA sequence
Length = 855
Score = 36.2 bits (18), Expect = 8.2
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 27 agaaaccaattgttgtgtagta 48
||||||||||||||||| ||||
Sbjct: 508 agaaaccaattgttgtgaagta 529
>dbj|AB071805.1| Oryza sativa (japonica cultivar-group) mRNA for transcription
factor PCF5, complete cds
Length = 2442
Score = 36.2 bits (18), Expect = 8.2
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 1 gcggccgcccgggcaggt 18
||||||||||||||||||
Sbjct: 4 gcggccgcccgggcaggt 21
>dbj|D12631.1|RICRPL7AB Oryza sativa (japonica cultivar-group) mRNA for ribosomal protein
L7A, complete cds
Length = 954
Score = 36.2 bits (18), Expect = 8.2
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 27 agaaaccaattgttgtgtagta 48
||||||||||||||||| ||||
Sbjct: 388 agaaaccaattgttgtgaagta 409
>dbj|AK062210.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-047-A04, full
insert sequence
Length = 1041
Score = 36.2 bits (18), Expect = 8.2
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 27 agaaaccaattgttgtgtagta 48
||||||||||||||||| ||||
Sbjct: 458 agaaaccaattgttgtgaagta 479
>dbj|AK098843.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000B08, full
insert sequence
Length = 1022
Score = 36.2 bits (18), Expect = 8.2
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 27 agaaaccaattgttgtgtagta 48
||||||||||||||||| ||||
Sbjct: 457 agaaaccaattgttgtgaagta 478
>dbj|AK121204.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023087N22, full
insert sequence
Length = 1091
Score = 36.2 bits (18), Expect = 8.2
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 27 agaaaccaattgttgtgtagta 48
||||||||||||||||| ||||
Sbjct: 461 agaaaccaattgttgtgaagta 482
>dbj|AP003884.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
clone:OJ1136_A10
Length = 101249
Score = 36.2 bits (18), Expect = 8.2
Identities = 21/22 (95%)
Strand = Plus / Minus
Query: 27 agaaaccaattgttgtgtagta 48
||||||||||||||||| ||||
Sbjct: 37355 agaaaccaattgttgtgaagta 37334
>dbj|AP004637.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
clone:P0703C03
Length = 162620
Score = 36.2 bits (18), Expect = 8.2
Identities = 21/22 (95%)
Strand = Plus / Minus
Query: 27 agaaaccaattgttgtgtagta 48
||||||||||||||||| ||||
Sbjct: 149831 agaaaccaattgttgtgaagta 149810
>gb|AC118981.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone
OSJNBa0060E18, from chromosome 3, complete sequence
Length = 147983
Score = 36.2 bits (18), Expect = 8.2
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 39 ttgtgtagtaacaagaca 56
||||||||||||||||||
Sbjct: 98589 ttgtgtagtaacaagaca 98606
>gb|AACV01002964.1| Oryza sativa (japonica cultivar-group) chromosome 1 Ctg002964, whole
genome shotgun sequence
Length = 62571
Score = 36.2 bits (18), Expect = 8.2
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 27 agaaaccaattgttgtgtagta 48
||||||||||||||||| ||||
Sbjct: 3945 agaaaccaattgttgtgaagta 3966
>gb|AACV01006179.1| Oryza sativa (japonica cultivar-group) chromosome 3 Ctg006179,
whole genome shotgun sequence
Length = 2417
Score = 36.2 bits (18), Expect = 8.2
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 39 ttgtgtagtaacaagaca 56
||||||||||||||||||
Sbjct: 453 ttgtgtagtaacaagaca 470
>gb|AACV01015308.1| Oryza sativa (japonica cultivar-group) chromosome 7 Ctg015308, whole
genome shotgun sequence
Length = 8919
Score = 36.2 bits (18), Expect = 8.2
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 39 ttgtgtagtaacaagaca 56
||||||||||||||||||
Sbjct: 8865 ttgtgtagtaacaagaca 8848
>gb|AACV01018111.1| Oryza sativa (japonica cultivar-group) chromosome 8 Ctg018111, whole
genome shotgun sequence
Length = 5728
Score = 36.2 bits (18), Expect = 8.2
Identities = 21/22 (95%)
Strand = Plus / Minus
Query: 27 agaaaccaattgttgtgtagta 48
||||||||||||||||| ||||
Sbjct: 4745 agaaaccaattgttgtgaagta 4724
>ref|NT_080061.1| Oryza sativa (japonica cultivar-group) chromosome 10
Length = 2697502
Score = 36.2 bits (18), Expect = 8.2
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 39 ttgtgtagtaacaagaca 56
||||||||||||||||||
Sbjct: 1207624 ttgtgtagtaacaagaca 1207607
>ref|XM_463662.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 927
Score = 36.2 bits (18), Expect = 8.2
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 27 agaaaccaattgttgtgtagta 48
||||||||||||||||| ||||
Sbjct: 518 agaaaccaattgttgtgaagta 539
>ref|XM_481630.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 1023
Score = 36.2 bits (18), Expect = 8.2
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 27 agaaaccaattgttgtgtagta 48
||||||||||||||||| ||||
Sbjct: 457 agaaaccaattgttgtgaagta 478
>ref|NT_079923.2| Oryza sativa (japonica cultivar-group)
Length = 2970704
Score = 36.2 bits (18), Expect = 8.2
Identities = 21/22 (95%)
Strand = Plus / Minus
Query: 27 agaaaccaattgttgtgtagta 48
||||||||||||||||| ||||
Sbjct: 198398 agaaaccaattgttgtgaagta 198377
>ref|NT_107190.1| Oryza sativa (japonica cultivar-group)
Length = 840383
Score = 36.2 bits (18), Expect = 8.2
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 39 ttgtgtagtaacaagaca 56
||||||||||||||||||
Sbjct: 603623 ttgtgtagtaacaagaca 603640
>ref|XM_507194.2| PREDICTED Oryza sativa (japonica cultivar-group), P0703C03.43 mRNA
Length = 1091
Score = 36.2 bits (18), Expect = 8.2
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 27 agaaaccaattgttgtgtagta 48
||||||||||||||||| ||||
Sbjct: 461 agaaaccaattgttgtgaagta 482
>ref|XM_507578.1| PREDICTED Oryza sativa (japonica cultivar-group), P0703C03.43 mRNA
Length = 1041
Score = 36.2 bits (18), Expect = 8.2
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 27 agaaaccaattgttgtgtagta 48
||||||||||||||||| ||||
Sbjct: 458 agaaaccaattgttgtgaagta 479
>ref|NT_107239.1| Oryza sativa (japonica cultivar-group)
Length = 28196693
Score = 36.2 bits (18), Expect = 8.2
Identities = 21/22 (95%)
Strand = Plus / Minus
Query: 27 agaaaccaattgttgtgtagta 48
||||||||||||||||| ||||
Sbjct: 14096188 agaaaccaattgttgtgaagta 14096167
>dbj|AP004223.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
clone:B1033B05
Length = 138882
Score = 36.2 bits (18), Expect = 8.2
Identities = 21/22 (95%)
Strand = Plus / Minus
Query: 27 agaaaccaattgttgtgtagta 48
||||||||||||||||| ||||
Sbjct: 51058 agaaaccaattgttgtgaagta 51037
>dbj|AP004672.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
clone:P0592G05
Length = 146220
Score = 36.2 bits (18), Expect = 8.2
Identities = 21/22 (95%)
Strand = Plus / Minus
Query: 27 agaaaccaattgttgtgtagta 48
||||||||||||||||| ||||
Sbjct: 140675 agaaaccaattgttgtgaagta 140654
>gb|CH401230.1| Oryza sativa (japonica cultivar-group) chromosome 8 scaffold000067 genomic
scaffold, whole genome shotgun sequence
Length = 19501165
Score = 36.2 bits (18), Expect = 8.2
Identities = 21/22 (95%)
Strand = Plus / Minus
Query: 27 agaaaccaattgttgtgtagta 48
||||||||||||||||| ||||
Sbjct: 5725271 agaaaccaattgttgtgaagta 5725250
>gb|CH401220.1| Oryza sativa (japonica cultivar-group) chromosome 7 scaffold000057 genomic
scaffold, whole genome shotgun sequence
Length = 3236776
Score = 36.2 bits (18), Expect = 8.2
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 39 ttgtgtagtaacaagaca 56
||||||||||||||||||
Sbjct: 1629311 ttgtgtagtaacaagaca 1629328
>gb|CM000145.1| Oryza sativa (japonica cultivar-group) chromosome 8, whole genome shotgun
sequence
Length = 27103171
Score = 36.2 bits (18), Expect = 8.2
Identities = 21/22 (95%)
Strand = Plus / Minus
Query: 27 agaaaccaattgttgtgtagta 48
||||||||||||||||| ||||
Sbjct: 13327277 agaaaccaattgttgtgaagta 13327256
>gb|CM000144.1| Oryza sativa (japonica cultivar-group) chromosome 7, whole genome shotgun
sequence
Length = 28626509
Score = 36.2 bits (18), Expect = 8.2
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 39 ttgtgtagtaacaagaca 56
||||||||||||||||||
Sbjct: 4446060 ttgtgtagtaacaagaca 4446077
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
sequence
Length = 28434780
Score = 36.2 bits (18), Expect = 8.2
Identities = 21/22 (95%)
Strand = Plus / Minus
Query: 27 agaaaccaattgttgtgtagta 48
||||||||||||||||| ||||
Sbjct: 14334275 agaaaccaattgttgtgaagta 14334254
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
sequence
Length = 22685906
Score = 36.2 bits (18), Expect = 8.2
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 39 ttgtgtagtaacaagaca 56
||||||||||||||||||
Sbjct: 5210797 ttgtgtagtaacaagaca 5210780
Database: Oryza_nucl_with_EST.fasta
Posted date: May 2, 2006 3:04 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 337,557
Number of Sequences: 438736
Number of extensions: 337557
Number of successful extensions: 8157
Number of sequences better than 10.0: 263
Number of HSP's better than 10.0 without gapping: 278
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 7391
Number of HSP's gapped (non-prelim): 766
length of query: 247
length of database: 2,800,419,916
effective HSP length: 20
effective length of query: 227
effective length of database: 2,791,645,196
effective search space: 633703459492
effective search space used: 633703459492
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 18 (36.2 bits)