BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QCM3d10.yg.2.1
(683 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
ref|XM_481429.1| Oryza sativa (japonica cultivar-group), mRNA 609 e-172
dbj|AK101676.1| Oryza sativa (japonica cultivar-group) cDNA... 601 e-169
gb|CB638627.1|CB638627 OSJNEa07C05.f OSJNEa Oryza sativa (j... 256 1e-065
dbj|AP004041.2| Oryza sativa (japonica cultivar-group) geno... 238 3e-060
gb|AACV01017983.1| Oryza sativa (japonica cultivar-group) c... 238 3e-060
dbj|BA000044.2| Oryza sativa (japonica cultivar-group) geno... 238 3e-060
ref|NT_107239.1| Oryza sativa (japonica cultivar-group) 238 3e-060
gb|CH401230.1| Oryza sativa (japonica cultivar-group) chrom... 238 3e-060
gb|CM000145.1| Oryza sativa (japonica cultivar-group) chrom... 238 3e-060
dbj|AP008214.1| Oryza sativa (japonica cultivar-group) geno... 238 3e-060
gb|AY360393.2| Oryza sativa (japonica cultivar-group) chrom... 238 3e-060
ref|NT_107233.1| Oryza sativa (japonica cultivar-group) 92 5e-016
dbj|AP003523.3| Oryza sativa (japonica cultivar-group) geno... 92 5e-016
dbj|AP003568.3| Oryza sativa (japonica cultivar-group) geno... 92 5e-016
gb|AACV01014670.1| Oryza sativa (japonica cultivar-group) c... 92 5e-016
gb|CH401216.1| Oryza sativa (japonica cultivar-group) chrom... 92 5e-016
gb|CM000143.1| Oryza sativa (japonica cultivar-group) chrom... 92 5e-016
dbj|AP008212.1| Oryza sativa (japonica cultivar-group) geno... 92 5e-016
dbj|AK063433.1| Oryza sativa (japonica cultivar-group) cDNA... 86 3e-014
dbj|AK065273.1| Oryza sativa (japonica cultivar-group) cDNA... 86 3e-014
dbj|AK098898.1| Oryza sativa (japonica cultivar-group) cDNA... 86 3e-014
dbj|AK121486.1| Oryza sativa (japonica cultivar-group) cDNA... 86 3e-014
dbj|AP004066.2| Oryza sativa (japonica cultivar-group) geno... 86 3e-014
gb|AACV01003496.1| Oryza sativa (japonica cultivar-group) c... 86 3e-014
ref|XM_464358.1| Oryza sativa (japonica cultivar-group), mRNA 86 3e-014
ref|NT_107177.1| Oryza sativa (japonica cultivar-group) 86 3e-014
ref|XM_506734.1| PREDICTED Oryza sativa (japonica cultivar-... 86 3e-014
ref|XM_506735.1| PREDICTED Oryza sativa (japonica cultivar-... 86 3e-014
gb|CH401169.1| Oryza sativa (japonica cultivar-group) chrom... 86 3e-014
gb|CM000139.1| Oryza sativa (japonica cultivar-group) chrom... 86 3e-014
dbj|AP008208.1| Oryza sativa (japonica cultivar-group) geno... 86 3e-014
gb|CB667221.1|CB667221 OSJNEd14H08.f OSJNEd Oryza sativa (j... 54 1e-004
gb|AU197546.1|AU197546 AU197546 Rice callus (2001) Oryza sa... 52 4e-004
dbj|AG209514.1| Oryza sativa (japonica cultivar-group) DNA,... 46 0.025
gb|AC091090.1|AC091090 Oryza sativa (japonica cultivar-grou... 46 0.025
dbj|AK121341.1| Oryza sativa (japonica cultivar-group) cDNA... 46 0.025
gb|AACV01002933.1| Oryza sativa (japonica cultivar-group) c... 46 0.025
dbj|BA000010.8| Oryza sativa (japonica cultivar-group) geno... 46 0.025
ref|XM_463619.1| Oryza sativa (japonica cultivar-group), p... 46 0.025
ref|NT_079927.2| Oryza sativa (japonica cultivar-group) 46 0.025
dbj|AP003437.3| Oryza sativa (japonica cultivar-group) geno... 46 0.025
gb|CH401168.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.025
gb|CM000138.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.025
dbj|AP008207.1| Oryza sativa (japonica cultivar-group) geno... 46 0.025
dbj|AP004773.1| Oryza sativa (japonica cultivar-group) chro... 42 0.39
dbj|D45890.1|RICSPS1 Oryza sativa DNA for sucrose phosphate... 42 0.39
dbj|AP004086.3| Oryza sativa (japonica cultivar-group) geno... 42 0.39
gb|AACV01004383.1| Oryza sativa (japonica cultivar-group) c... 42 0.39
ref|NT_107179.1| Oryza sativa (japonica cultivar-group) 42 0.39
gb|CH401170.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.39
>ref|XM_481429.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 3201
Score = 609 bits (307), Expect = e-172
Identities = 560/651 (86%)
Strand = Plus / Plus
Query: 8 atgatggttttgatctaactatggcccggaaactcagagcaagaataaggcgtggtgtga 67
|||||||||||||| |||| ||||| ||||||| ||||||||||||| |||||||||||
Sbjct: 1247 atgatggttttgatttaaccatggcaaggaaacttagagcaagaataaagcgtggtgtga 1306
Query: 68 gctgctttggtcgtnanannnnnnntatgattgcaatccctcctggcatggagtttagtc 127
|||||| ||||| | | |||||||||| | |||||||||||||||||||| |
Sbjct: 1307 gctgctacggtcgctacatgcctcgtatgattgcagttcctcctggcatggagtttagcc 1366
Query: 128 atatagcaccacatgatgttgacctcgacagtgaggaaggaaatggagatggctcaggtt 187
|||||| || ||||||||||| | || |||| |||| |||| |||||| |||||||
Sbjct: 1367 atatagtgcctcatgatgttgatcaggatggtgaagaagctaatgaagatggttcaggtt 1426
Query: 188 caccagatccacctatttgggctgatataatgcgcttcttctcaaacccccggaagccaa 247
|| ||||||||||||||||||||||||||||||| |||||||| ||||| || ||||| |
Sbjct: 1427 caacagatccacctatttgggctgatataatgcgattcttctccaaccctcgcaagccca 1486
Query: 248 tgattcttgctcttgctcgtccggatccgaagaagaatatcactactctagtcaaagcat 307
||||||| |||||||||||||| ||||| |||||||| |||||||| || ||||| ||||
Sbjct: 1487 tgattctagctcttgctcgtccagatcctaagaagaacatcactacactggtcaaggcat 1546
Query: 308 ttggtgaacatcgtgaactgagaaatttagcaaatcttacactgatcatggggaatcgtg 367
||||||||||||||||| |||||||||||||||| |||||||| |||||||| || ||||
Sbjct: 1547 ttggtgaacatcgtgaattgagaaatttagcaaaccttacacttatcatgggtaaccgtg 1606
Query: 368 atgtcattgatgaaatgtcaagcacaaatgcagctgttttgacttcagcactcaagttaa 427
|||| |||||||||||||||||||||||| ||||||||||||| ||| |||||||||||
Sbjct: 1607 atgttattgatgaaatgtcaagcacaaattcagctgttttgacatcaatactcaagttaa 1666
Query: 428 ttgataaatatgatctatatggacaagtggcataccccaagcaccataagcaatctgaag 487
|||| || |||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 1667 ttgacaagtatgatctatatggccaagtggcataccccaagcaccataagcaatctgaag 1726
Query: 488 ttcctgatatttatcgtttagctgcgagaacaaaaggagtttttatcaattgtgcattgg 547
|||| ||||||||||||||||| || |||||||| || || |||||||||||||| ||
Sbjct: 1727 ttccagatatttatcgtttagcggcaagaacaaagggggtgtttatcaattgtgctttta 1786
Query: 548 ttgaaccatttggactcaccttgattgaggntnnngcatatggtctacccatgnnnnnca 607
| || ||||||||||| ||||||||||||| | || ||||||||||| ||| |
Sbjct: 1787 tcgagccatttggactaaccttgattgaggctgctgcttatggtctaccaatggttgcta 1846
Query: 608 cccgaaatggtgggcctgtnnacatacatcgggttcttgataatggaattc 658
| |||||||||||||| || | ||||||||||||||||| ||||| ||||
Sbjct: 1847 ctcgaaatggtgggcccgttgatatacatcgggttcttgacaatggtattc 1897
>dbj|AK101676.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033058F14, full
insert sequence
Length = 3858
Score = 601 bits (303), Expect = e-169
Identities = 559/651 (85%)
Strand = Plus / Plus
Query: 8 atgatggttttgatctaactatggcccggaaactcagagcaagaataaggcgtggtgtga 67
|||||||||||||| |||| ||||| ||||||| ||||||||||||| |||||||||||
Sbjct: 1442 atgatggttttgatttaaccatggcaaggaaacttagagcaagaataaagcgtggtgtga 1501
Query: 68 gctgctttggtcgtnanannnnnnntatgattgcaatccctcctggcatggagtttagtc 127
|||||| ||||| | | |||||||||| | |||||||||||||||||||| |
Sbjct: 1502 gctgctacggtcgctacatgcctcgtatgattgcagttcctcctggcatggagtttagcc 1561
Query: 128 atatagcaccacatgatgttgacctcgacagtgaggaaggaaatggagatggctcaggtt 187
|||||| || ||||||||||| | || |||| |||| |||| |||||| |||||||
Sbjct: 1562 atatagtgcctcatgatgttgatcaggatggtgaagaagctaatgaagatggttcaggtt 1621
Query: 188 caccagatccacctatttgggctgatataatgcgcttcttctcaaacccccggaagccaa 247
|| ||||||||||||||||||||||||||||||| |||||||| ||||| || ||||| |
Sbjct: 1622 caacagatccacctatttgggctgatataatgcgattcttctccaaccctcgcaagccca 1681
Query: 248 tgattcttgctcttgctcgtccggatccgaagaagaatatcactactctagtcaaagcat 307
||||||| |||||||||||||| ||||| |||||||| |||||||| || ||||| ||||
Sbjct: 1682 tgattctagctcttgctcgtccagatcctaagaagaacatcactacactggtcaaggcat 1741
Query: 308 ttggtgaacatcgtgaactgagaaatttagcaaatcttacactgatcatggggaatcgtg 367
||||||||||||||||| ||||||||||||||| |||||||| |||||||| || ||||
Sbjct: 1742 ttggtgaacatcgtgaattgagaaatttagcaagccttacacttatcatgggtaaccgtg 1801
Query: 368 atgtcattgatgaaatgtcaagcacaaatgcagctgttttgacttcagcactcaagttaa 427
|||| |||||||||||||||||||||||| ||||||||||||| ||| |||||||||||
Sbjct: 1802 atgttattgatgaaatgtcaagcacaaattcagctgttttgacatcaatactcaagttaa 1861
Query: 428 ttgataaatatgatctatatggacaagtggcataccccaagcaccataagcaatctgaag 487
|||| || |||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 1862 ttgacaagtatgatctatatggccaagtggcataccccaagcaccataagcaatctgaag 1921
Query: 488 ttcctgatatttatcgtttagctgcgagaacaaaaggagtttttatcaattgtgcattgg 547
|||| ||||||||||||||||| || |||||||| || || |||||||||||||| ||
Sbjct: 1922 ttccagatatttatcgtttagcggcaagaacaaagggggtgtttatcaattgtgctttta 1981
Query: 548 ttgaaccatttggactcaccttgattgaggntnnngcatatggtctacccatgnnnnnca 607
| || ||||||||||| ||||||||||||| | || ||||||||||| ||| |
Sbjct: 1982 tcgagccatttggactaaccttgattgaggctgctgcttatggtctaccaatggttacta 2041
Query: 608 cccgaaatggtgggcctgtnnacatacatcgggttcttgataatggaattc 658
| |||||||||||||| || | ||||||||||||||||| ||||| ||||
Sbjct: 2042 ctcgaaatggtgggcccgttgatatacatcgggttcttgacaatggtattc 2092
>gb|CB638627.1|CB638627 OSJNEa07C05.f OSJNEa Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEa07C05 5', mRNA sequence
Length = 486
Score = 256 bits (129), Expect = 1e-065
Identities = 219/249 (87%)
Strand = Plus / Plus
Query: 93 tatgattgcaatccctcctggcatggagtttagtcatatagcaccacatgatgttgacct 152
|||||||||| | |||||||||||||||||||| ||||||| || ||||||||||| |
Sbjct: 23 tatgattgcagttcctcctggcatggagtttagccatatagtgcctcatgatgttgatca 82
Query: 153 cgacagtgaggaaggaaatggagatggctcaggttcaccagatccacctatttgggctga 212
|| |||| |||| |||| |||||| ||||||||| ||||||||||||||||||||||
Sbjct: 83 ggatggtgaagaagctaatgaagatggttcaggttcaacagatccacctatttgggctga 142
Query: 213 tataatgcgcttcttctcaaacccccggaagccaatgattcttgctcttgctcgtccgga 272
||||||||| |||||||| ||||| || ||||| |||||||| |||||||||||||| ||
Sbjct: 143 tataatgcgattcttctccaaccctcgcaagcccatgattctagctcttgctcgtccaga 202
Query: 273 tccgaagaagaatatcactactctagtcaaagcatttggtgaacatcgtgaactgagaaa 332
||| |||||||| |||||||| || ||||| ||||||||||||||||||||| |||||||
Sbjct: 203 tcctaagaagaacatcactacactggtcaaggcatttggtgaacatcgtgaattgagaaa 262
Query: 333 tttagcaaa 341
|||||||||
Sbjct: 263 tttagcaaa 271
>dbj|AP004041.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
clone:OJ1115_A07
Length = 165126
Score = 238 bits (120), Expect = 3e-060
Identities = 162/176 (92%)
Strand = Plus / Plus
Query: 346 acactgatcatggggaatcgtgatgtcattgatgaaatgtcaagcacaaatgcagctgtt 405
||||| |||||||| || |||||||| |||||||||||||||||||||||| ||||||||
Sbjct: 14623 acacttatcatgggtaaccgtgatgttattgatgaaatgtcaagcacaaattcagctgtt 14682
Query: 406 ttgacttcagcactcaagttaattgataaatatgatctatatggacaagtggcatacccc 465
||||| ||| ||||||||||||||| || |||||||||||||| |||||||||||||||
Sbjct: 14683 ttgacatcaatactcaagttaattgacaagtatgatctatatggccaagtggcatacccc 14742
Query: 466 aagcaccataagcaatctgaagttcctgatatttatcgtttagctgcgagaacaaa 521
|||||||||||||||||||||||||| ||||||||||||||||| || ||||||||
Sbjct: 14743 aagcaccataagcaatctgaagttccagatatttatcgtttagcggcaagaacaaa 14798
Score = 151 bits (76), Expect = 6e-034
Identities = 115/128 (89%)
Strand = Plus / Plus
Query: 214 ataatgcgcttcttctcaaacccccggaagccaatgattcttgctcttgctcgtccggat 273
|||||||| |||||||| ||||| || ||||| |||||||| |||||||||||||| |||
Sbjct: 14316 ataatgcgattcttctccaaccctcgcaagcccatgattctagctcttgctcgtccagat 14375
Query: 274 ccgaagaagaatatcactactctagtcaaagcatttggtgaacatcgtgaactgagaaat 333
|| |||||||| |||||||| || ||||| ||||||||||||||||||||| ||||||||
Sbjct: 14376 cctaagaagaacatcactacactggtcaaggcatttggtgaacatcgtgaattgagaaat 14435
Query: 334 ttagcaaa 341
||||||||
Sbjct: 14436 ttagcaaa 14443
Score = 95.6 bits (48), Expect = 3e-017
Identities = 93/108 (86%)
Strand = Plus / Plus
Query: 106 cctcctggcatggagtttagtcatatagcaccacatgatgttgacctcgacagtgaggaa 165
|||||||||||||||||||| ||||||| || ||||||||||| | || |||| |||
Sbjct: 14098 cctcctggcatggagtttagccatatagtgcctcatgatgttgatcaggatggtgaagaa 14157
Query: 166 ggaaatggagatggctcaggttcaccagatccacctatttgggctgat 213
| |||| |||||| ||||||||| |||||||||||||||||||||||
Sbjct: 14158 gctaatgaagatggttcaggttcaacagatccacctatttgggctgat 14205
Score = 83.8 bits (42), Expect = 1e-013
Identities = 60/66 (90%)
Strand = Plus / Plus
Query: 8 atgatggttttgatctaactatggcccggaaactcagagcaagaataaggcgtggtgtga 67
|||||||||||||| |||| ||||| ||||||| ||||||||||||| |||||||||||
Sbjct: 13906 atgatggttttgatttaaccatggcaaggaaacttagagcaagaataaagcgtggtgtga 13965
Query: 68 gctgct 73
||||||
Sbjct: 13966 gctgct 13971
Score = 50.1 bits (25), Expect = 0.002
Identities = 43/49 (87%)
Strand = Plus / Plus
Query: 529 tttatcaattgtgcattggttgaaccatttggactcaccttgattgagg 577
|||||||||||||| || | || ||||||||||| |||||||||||||
Sbjct: 15120 tttatcaattgtgcttttatcgagccatttggactaaccttgattgagg 15168
>gb|AACV01017983.1| Oryza sativa (japonica cultivar-group) chromosome 8 Ctg017983, whole
genome shotgun sequence
Length = 17582
Score = 238 bits (120), Expect = 3e-060
Identities = 162/176 (92%)
Strand = Plus / Plus
Query: 346 acactgatcatggggaatcgtgatgtcattgatgaaatgtcaagcacaaatgcagctgtt 405
||||| |||||||| || |||||||| |||||||||||||||||||||||| ||||||||
Sbjct: 5120 acacttatcatgggtaaccgtgatgttattgatgaaatgtcaagcacaaattcagctgtt 5179
Query: 406 ttgacttcagcactcaagttaattgataaatatgatctatatggacaagtggcatacccc 465
||||| ||| ||||||||||||||| || |||||||||||||| |||||||||||||||
Sbjct: 5180 ttgacatcaatactcaagttaattgacaagtatgatctatatggccaagtggcatacccc 5239
Query: 466 aagcaccataagcaatctgaagttcctgatatttatcgtttagctgcgagaacaaa 521
|||||||||||||||||||||||||| ||||||||||||||||| || ||||||||
Sbjct: 5240 aagcaccataagcaatctgaagttccagatatttatcgtttagcggcaagaacaaa 5295
Score = 151 bits (76), Expect = 6e-034
Identities = 115/128 (89%)
Strand = Plus / Plus
Query: 214 ataatgcgcttcttctcaaacccccggaagccaatgattcttgctcttgctcgtccggat 273
|||||||| |||||||| ||||| || ||||| |||||||| |||||||||||||| |||
Sbjct: 4813 ataatgcgattcttctccaaccctcgcaagcccatgattctagctcttgctcgtccagat 4872
Query: 274 ccgaagaagaatatcactactctagtcaaagcatttggtgaacatcgtgaactgagaaat 333
|| |||||||| |||||||| || ||||| ||||||||||||||||||||| ||||||||
Sbjct: 4873 cctaagaagaacatcactacactggtcaaggcatttggtgaacatcgtgaattgagaaat 4932
Query: 334 ttagcaaa 341
||||||||
Sbjct: 4933 ttagcaaa 4940
Score = 95.6 bits (48), Expect = 3e-017
Identities = 93/108 (86%)
Strand = Plus / Plus
Query: 106 cctcctggcatggagtttagtcatatagcaccacatgatgttgacctcgacagtgaggaa 165
|||||||||||||||||||| ||||||| || ||||||||||| | || |||| |||
Sbjct: 4595 cctcctggcatggagtttagccatatagtgcctcatgatgttgatcaggatggtgaagaa 4654
Query: 166 ggaaatggagatggctcaggttcaccagatccacctatttgggctgat 213
| |||| |||||| ||||||||| |||||||||||||||||||||||
Sbjct: 4655 gctaatgaagatggttcaggttcaacagatccacctatttgggctgat 4702
Score = 83.8 bits (42), Expect = 1e-013
Identities = 60/66 (90%)
Strand = Plus / Plus
Query: 8 atgatggttttgatctaactatggcccggaaactcagagcaagaataaggcgtggtgtga 67
|||||||||||||| |||| ||||| ||||||| ||||||||||||| |||||||||||
Sbjct: 4403 atgatggttttgatttaaccatggcaaggaaacttagagcaagaataaagcgtggtgtga 4462
Query: 68 gctgct 73
||||||
Sbjct: 4463 gctgct 4468
Score = 50.1 bits (25), Expect = 0.002
Identities = 43/49 (87%)
Strand = Plus / Plus
Query: 529 tttatcaattgtgcattggttgaaccatttggactcaccttgattgagg 577
|||||||||||||| || | || ||||||||||| |||||||||||||
Sbjct: 5617 tttatcaattgtgcttttatcgagccatttggactaaccttgattgagg 5665
>dbj|BA000044.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8,
centromeric region
Length = 1992366
Score = 238 bits (120), Expect = 3e-060
Identities = 162/176 (92%)
Strand = Plus / Plus
Query: 346 acactgatcatggggaatcgtgatgtcattgatgaaatgtcaagcacaaatgcagctgtt 405
||||| |||||||| || |||||||| |||||||||||||||||||||||| ||||||||
Sbjct: 462089 acacttatcatgggtaaccgtgatgttattgatgaaatgtcaagcacaaattcagctgtt 462148
Query: 406 ttgacttcagcactcaagttaattgataaatatgatctatatggacaagtggcatacccc 465
||||| ||| ||||||||||||||| || |||||||||||||| |||||||||||||||
Sbjct: 462149 ttgacatcaatactcaagttaattgacaagtatgatctatatggccaagtggcatacccc 462208
Query: 466 aagcaccataagcaatctgaagttcctgatatttatcgtttagctgcgagaacaaa 521
|||||||||||||||||||||||||| ||||||||||||||||| || ||||||||
Sbjct: 462209 aagcaccataagcaatctgaagttccagatatttatcgtttagcggcaagaacaaa 462264
Score = 151 bits (76), Expect = 6e-034
Identities = 115/128 (89%)
Strand = Plus / Plus
Query: 214 ataatgcgcttcttctcaaacccccggaagccaatgattcttgctcttgctcgtccggat 273
|||||||| |||||||| ||||| || ||||| |||||||| |||||||||||||| |||
Sbjct: 461782 ataatgcgattcttctccaaccctcgcaagcccatgattctagctcttgctcgtccagat 461841
Query: 274 ccgaagaagaatatcactactctagtcaaagcatttggtgaacatcgtgaactgagaaat 333
|| |||||||| |||||||| || ||||| ||||||||||||||||||||| ||||||||
Sbjct: 461842 cctaagaagaacatcactacactggtcaaggcatttggtgaacatcgtgaattgagaaat 461901
Query: 334 ttagcaaa 341
||||||||
Sbjct: 461902 ttagcaaa 461909
Score = 95.6 bits (48), Expect = 3e-017
Identities = 93/108 (86%)
Strand = Plus / Plus
Query: 106 cctcctggcatggagtttagtcatatagcaccacatgatgttgacctcgacagtgaggaa 165
|||||||||||||||||||| ||||||| || ||||||||||| | || |||| |||
Sbjct: 461564 cctcctggcatggagtttagccatatagtgcctcatgatgttgatcaggatggtgaagaa 461623
Query: 166 ggaaatggagatggctcaggttcaccagatccacctatttgggctgat 213
| |||| |||||| ||||||||| |||||||||||||||||||||||
Sbjct: 461624 gctaatgaagatggttcaggttcaacagatccacctatttgggctgat 461671
Score = 83.8 bits (42), Expect = 1e-013
Identities = 60/66 (90%)
Strand = Plus / Plus
Query: 8 atgatggttttgatctaactatggcccggaaactcagagcaagaataaggcgtggtgtga 67
|||||||||||||| |||| ||||| ||||||| ||||||||||||| |||||||||||
Sbjct: 461372 atgatggttttgatttaaccatggcaaggaaacttagagcaagaataaagcgtggtgtga 461431
Query: 68 gctgct 73
||||||
Sbjct: 461432 gctgct 461437
Score = 50.1 bits (25), Expect = 0.002
Identities = 43/49 (87%)
Strand = Plus / Plus
Query: 529 tttatcaattgtgcattggttgaaccatttggactcaccttgattgagg 577
|||||||||||||| || | || ||||||||||| |||||||||||||
Sbjct: 462586 tttatcaattgtgcttttatcgagccatttggactaaccttgattgagg 462634
>ref|NT_107239.1| Oryza sativa (japonica cultivar-group)
Length = 28196693
Score = 238 bits (120), Expect = 3e-060
Identities = 162/176 (92%)
Strand = Plus / Plus
Query: 346 acactgatcatggggaatcgtgatgtcattgatgaaatgtcaagcacaaatgcagctgtt 405
||||| |||||||| || |||||||| |||||||||||||||||||||||| ||||||||
Sbjct: 12170910 acacttatcatgggtaaccgtgatgttattgatgaaatgtcaagcacaaattcagctgtt 12170969
Query: 406 ttgacttcagcactcaagttaattgataaatatgatctatatggacaagtggcatacccc 465
||||| ||| ||||||||||||||| || |||||||||||||| |||||||||||||||
Sbjct: 12170970 ttgacatcaatactcaagttaattgacaagtatgatctatatggccaagtggcatacccc 12171029
Query: 466 aagcaccataagcaatctgaagttcctgatatttatcgtttagctgcgagaacaaa 521
|||||||||||||||||||||||||| ||||||||||||||||| || ||||||||
Sbjct: 12171030 aagcaccataagcaatctgaagttccagatatttatcgtttagcggcaagaacaaa 12171085
Score = 151 bits (76), Expect = 6e-034
Identities = 115/128 (89%)
Strand = Plus / Plus
Query: 214 ataatgcgcttcttctcaaacccccggaagccaatgattcttgctcttgctcgtccggat 273
|||||||| |||||||| ||||| || ||||| |||||||| |||||||||||||| |||
Sbjct: 12170603 ataatgcgattcttctccaaccctcgcaagcccatgattctagctcttgctcgtccagat 12170662
Query: 274 ccgaagaagaatatcactactctagtcaaagcatttggtgaacatcgtgaactgagaaat 333
|| |||||||| |||||||| || ||||| ||||||||||||||||||||| ||||||||
Sbjct: 12170663 cctaagaagaacatcactacactggtcaaggcatttggtgaacatcgtgaattgagaaat 12170722
Query: 334 ttagcaaa 341
||||||||
Sbjct: 12170723 ttagcaaa 12170730
Score = 95.6 bits (48), Expect = 3e-017
Identities = 93/108 (86%)
Strand = Plus / Plus
Query: 106 cctcctggcatggagtttagtcatatagcaccacatgatgttgacctcgacagtgaggaa 165
|||||||||||||||||||| ||||||| || ||||||||||| | || |||| |||
Sbjct: 12170385 cctcctggcatggagtttagccatatagtgcctcatgatgttgatcaggatggtgaagaa 12170444
Query: 166 ggaaatggagatggctcaggttcaccagatccacctatttgggctgat 213
| |||| |||||| ||||||||| |||||||||||||||||||||||
Sbjct: 12170445 gctaatgaagatggttcaggttcaacagatccacctatttgggctgat 12170492
Score = 83.8 bits (42), Expect = 1e-013
Identities = 60/66 (90%)
Strand = Plus / Plus
Query: 8 atgatggttttgatctaactatggcccggaaactcagagcaagaataaggcgtggtgtga 67
|||||||||||||| |||| ||||| ||||||| ||||||||||||| |||||||||||
Sbjct: 12170193 atgatggttttgatttaaccatggcaaggaaacttagagcaagaataaagcgtggtgtga 12170252
Query: 68 gctgct 73
||||||
Sbjct: 12170253 gctgct 12170258
Score = 50.1 bits (25), Expect = 0.002
Identities = 43/49 (87%)
Strand = Plus / Plus
Query: 529 tttatcaattgtgcattggttgaaccatttggactcaccttgattgagg 577
|||||||||||||| || | || ||||||||||| |||||||||||||
Sbjct: 12171407 tttatcaattgtgcttttatcgagccatttggactaaccttgattgagg 12171455
>gb|CH401230.1| Oryza sativa (japonica cultivar-group) chromosome 8 scaffold000067 genomic
scaffold, whole genome shotgun sequence
Length = 19501165
Score = 238 bits (120), Expect = 3e-060
Identities = 162/176 (92%)
Strand = Plus / Plus
Query: 346 acactgatcatggggaatcgtgatgtcattgatgaaatgtcaagcacaaatgcagctgtt 405
||||| |||||||| || |||||||| |||||||||||||||||||||||| ||||||||
Sbjct: 4161239 acacttatcatgggtaaccgtgatgttattgatgaaatgtcaagcacaaattcagctgtt 4161298
Query: 406 ttgacttcagcactcaagttaattgataaatatgatctatatggacaagtggcatacccc 465
||||| ||| ||||||||||||||| || |||||||||||||| |||||||||||||||
Sbjct: 4161299 ttgacatcaatactcaagttaattgacaagtatgatctatatggccaagtggcatacccc 4161358
Query: 466 aagcaccataagcaatctgaagttcctgatatttatcgtttagctgcgagaacaaa 521
|||||||||||||||||||||||||| ||||||||||||||||| || ||||||||
Sbjct: 4161359 aagcaccataagcaatctgaagttccagatatttatcgtttagcggcaagaacaaa 4161414
Score = 151 bits (76), Expect = 6e-034
Identities = 115/128 (89%)
Strand = Plus / Plus
Query: 214 ataatgcgcttcttctcaaacccccggaagccaatgattcttgctcttgctcgtccggat 273
|||||||| |||||||| ||||| || ||||| |||||||| |||||||||||||| |||
Sbjct: 4160932 ataatgcgattcttctccaaccctcgcaagcccatgattctagctcttgctcgtccagat 4160991
Query: 274 ccgaagaagaatatcactactctagtcaaagcatttggtgaacatcgtgaactgagaaat 333
|| |||||||| |||||||| || ||||| ||||||||||||||||||||| ||||||||
Sbjct: 4160992 cctaagaagaacatcactacactggtcaaggcatttggtgaacatcgtgaattgagaaat 4161051
Query: 334 ttagcaaa 341
||||||||
Sbjct: 4161052 ttagcaaa 4161059
Score = 95.6 bits (48), Expect = 3e-017
Identities = 93/108 (86%)
Strand = Plus / Plus
Query: 106 cctcctggcatggagtttagtcatatagcaccacatgatgttgacctcgacagtgaggaa 165
|||||||||||||||||||| ||||||| || ||||||||||| | || |||| |||
Sbjct: 4160714 cctcctggcatggagtttagccatatagtgcctcatgatgttgatcaggatggtgaagaa 4160773
Query: 166 ggaaatggagatggctcaggttcaccagatccacctatttgggctgat 213
| |||| |||||| ||||||||| |||||||||||||||||||||||
Sbjct: 4160774 gctaatgaagatggttcaggttcaacagatccacctatttgggctgat 4160821
Score = 83.8 bits (42), Expect = 1e-013
Identities = 60/66 (90%)
Strand = Plus / Plus
Query: 8 atgatggttttgatctaactatggcccggaaactcagagcaagaataaggcgtggtgtga 67
|||||||||||||| |||| ||||| ||||||| ||||||||||||| |||||||||||
Sbjct: 4160522 atgatggttttgatttaaccatggcaaggaaacttagagcaagaataaagcgtggtgtga 4160581
Query: 68 gctgct 73
||||||
Sbjct: 4160582 gctgct 4160587
Score = 50.1 bits (25), Expect = 0.002
Identities = 43/49 (87%)
Strand = Plus / Plus
Query: 529 tttatcaattgtgcattggttgaaccatttggactcaccttgattgagg 577
|||||||||||||| || | || ||||||||||| |||||||||||||
Sbjct: 4161736 tttatcaattgtgcttttatcgagccatttggactaaccttgattgagg 4161784
>gb|CM000145.1| Oryza sativa (japonica cultivar-group) chromosome 8, whole genome shotgun
sequence
Length = 27103171
Score = 238 bits (120), Expect = 3e-060
Identities = 162/176 (92%)
Strand = Plus / Plus
Query: 346 acactgatcatggggaatcgtgatgtcattgatgaaatgtcaagcacaaatgcagctgtt 405
||||| |||||||| || |||||||| |||||||||||||||||||||||| ||||||||
Sbjct: 11763245 acacttatcatgggtaaccgtgatgttattgatgaaatgtcaagcacaaattcagctgtt 11763304
Query: 406 ttgacttcagcactcaagttaattgataaatatgatctatatggacaagtggcatacccc 465
||||| ||| ||||||||||||||| || |||||||||||||| |||||||||||||||
Sbjct: 11763305 ttgacatcaatactcaagttaattgacaagtatgatctatatggccaagtggcatacccc 11763364
Query: 466 aagcaccataagcaatctgaagttcctgatatttatcgtttagctgcgagaacaaa 521
|||||||||||||||||||||||||| ||||||||||||||||| || ||||||||
Sbjct: 11763365 aagcaccataagcaatctgaagttccagatatttatcgtttagcggcaagaacaaa 11763420
Score = 151 bits (76), Expect = 6e-034
Identities = 115/128 (89%)
Strand = Plus / Plus
Query: 214 ataatgcgcttcttctcaaacccccggaagccaatgattcttgctcttgctcgtccggat 273
|||||||| |||||||| ||||| || ||||| |||||||| |||||||||||||| |||
Sbjct: 11762938 ataatgcgattcttctccaaccctcgcaagcccatgattctagctcttgctcgtccagat 11762997
Query: 274 ccgaagaagaatatcactactctagtcaaagcatttggtgaacatcgtgaactgagaaat 333
|| |||||||| |||||||| || ||||| ||||||||||||||||||||| ||||||||
Sbjct: 11762998 cctaagaagaacatcactacactggtcaaggcatttggtgaacatcgtgaattgagaaat 11763057
Query: 334 ttagcaaa 341
||||||||
Sbjct: 11763058 ttagcaaa 11763065
Score = 95.6 bits (48), Expect = 3e-017
Identities = 93/108 (86%)
Strand = Plus / Plus
Query: 106 cctcctggcatggagtttagtcatatagcaccacatgatgttgacctcgacagtgaggaa 165
|||||||||||||||||||| ||||||| || ||||||||||| | || |||| |||
Sbjct: 11762720 cctcctggcatggagtttagccatatagtgcctcatgatgttgatcaggatggtgaagaa 11762779
Query: 166 ggaaatggagatggctcaggttcaccagatccacctatttgggctgat 213
| |||| |||||| ||||||||| |||||||||||||||||||||||
Sbjct: 11762780 gctaatgaagatggttcaggttcaacagatccacctatttgggctgat 11762827
Score = 83.8 bits (42), Expect = 1e-013
Identities = 60/66 (90%)
Strand = Plus / Plus
Query: 8 atgatggttttgatctaactatggcccggaaactcagagcaagaataaggcgtggtgtga 67
|||||||||||||| |||| ||||| ||||||| ||||||||||||| |||||||||||
Sbjct: 11762528 atgatggttttgatttaaccatggcaaggaaacttagagcaagaataaagcgtggtgtga 11762587
Query: 68 gctgct 73
||||||
Sbjct: 11762588 gctgct 11762593
Score = 50.1 bits (25), Expect = 0.002
Identities = 43/49 (87%)
Strand = Plus / Plus
Query: 529 tttatcaattgtgcattggttgaaccatttggactcaccttgattgagg 577
|||||||||||||| || | || ||||||||||| |||||||||||||
Sbjct: 11763742 tttatcaattgtgcttttatcgagccatttggactaaccttgattgagg 11763790
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
sequence
Length = 28434780
Score = 238 bits (120), Expect = 3e-060
Identities = 162/176 (92%)
Strand = Plus / Plus
Query: 346 acactgatcatggggaatcgtgatgtcattgatgaaatgtcaagcacaaatgcagctgtt 405
||||| |||||||| || |||||||| |||||||||||||||||||||||| ||||||||
Sbjct: 12410594 acacttatcatgggtaaccgtgatgttattgatgaaatgtcaagcacaaattcagctgtt 12410653
Query: 406 ttgacttcagcactcaagttaattgataaatatgatctatatggacaagtggcatacccc 465
||||| ||| ||||||||||||||| || |||||||||||||| |||||||||||||||
Sbjct: 12410654 ttgacatcaatactcaagttaattgacaagtatgatctatatggccaagtggcatacccc 12410713
Query: 466 aagcaccataagcaatctgaagttcctgatatttatcgtttagctgcgagaacaaa 521
|||||||||||||||||||||||||| ||||||||||||||||| || ||||||||
Sbjct: 12410714 aagcaccataagcaatctgaagttccagatatttatcgtttagcggcaagaacaaa 12410769
Score = 151 bits (76), Expect = 6e-034
Identities = 115/128 (89%)
Strand = Plus / Plus
Query: 214 ataatgcgcttcttctcaaacccccggaagccaatgattcttgctcttgctcgtccggat 273
|||||||| |||||||| ||||| || ||||| |||||||| |||||||||||||| |||
Sbjct: 12410287 ataatgcgattcttctccaaccctcgcaagcccatgattctagctcttgctcgtccagat 12410346
Query: 274 ccgaagaagaatatcactactctagtcaaagcatttggtgaacatcgtgaactgagaaat 333
|| |||||||| |||||||| || ||||| ||||||||||||||||||||| ||||||||
Sbjct: 12410347 cctaagaagaacatcactacactggtcaaggcatttggtgaacatcgtgaattgagaaat 12410406
Query: 334 ttagcaaa 341
||||||||
Sbjct: 12410407 ttagcaaa 12410414
Score = 95.6 bits (48), Expect = 3e-017
Identities = 93/108 (86%)
Strand = Plus / Plus
Query: 106 cctcctggcatggagtttagtcatatagcaccacatgatgttgacctcgacagtgaggaa 165
|||||||||||||||||||| ||||||| || ||||||||||| | || |||| |||
Sbjct: 12410069 cctcctggcatggagtttagccatatagtgcctcatgatgttgatcaggatggtgaagaa 12410128
Query: 166 ggaaatggagatggctcaggttcaccagatccacctatttgggctgat 213
| |||| |||||| ||||||||| |||||||||||||||||||||||
Sbjct: 12410129 gctaatgaagatggttcaggttcaacagatccacctatttgggctgat 12410176
Score = 83.8 bits (42), Expect = 1e-013
Identities = 60/66 (90%)
Strand = Plus / Plus
Query: 8 atgatggttttgatctaactatggcccggaaactcagagcaagaataaggcgtggtgtga 67
|||||||||||||| |||| ||||| ||||||| ||||||||||||| |||||||||||
Sbjct: 12409877 atgatggttttgatttaaccatggcaaggaaacttagagcaagaataaagcgtggtgtga 12409936
Query: 68 gctgct 73
||||||
Sbjct: 12409937 gctgct 12409942
Score = 50.1 bits (25), Expect = 0.002
Identities = 43/49 (87%)
Strand = Plus / Plus
Query: 529 tttatcaattgtgcattggttgaaccatttggactcaccttgattgagg 577
|||||||||||||| || | || ||||||||||| |||||||||||||
Sbjct: 12411091 tttatcaattgtgcttttatcgagccatttggactaaccttgattgagg 12411139
>gb|AY360393.2| Oryza sativa (japonica cultivar-group) chromosome 8 BAC OSJNBa0096K16,
complete sequence
Length = 164501
Score = 238 bits (120), Expect = 3e-060
Identities = 162/176 (92%)
Strand = Plus / Plus
Query: 346 acactgatcatggggaatcgtgatgtcattgatgaaatgtcaagcacaaatgcagctgtt 405
||||| |||||||| || |||||||| |||||||||||||||||||||||| ||||||||
Sbjct: 79909 acacttatcatgggtaaccgtgatgttattgatgaaatgtcaagcacaaattcagctgtt 79968
Query: 406 ttgacttcagcactcaagttaattgataaatatgatctatatggacaagtggcatacccc 465
||||| ||| ||||||||||||||| || |||||||||||||| |||||||||||||||
Sbjct: 79969 ttgacatcaatactcaagttaattgacaagtatgatctatatggccaagtggcatacccc 80028
Query: 466 aagcaccataagcaatctgaagttcctgatatttatcgtttagctgcgagaacaaa 521
|||||||||||||||||||||||||| ||||||||||||||||| || ||||||||
Sbjct: 80029 aagcaccataagcaatctgaagttccagatatttatcgtttagcggcaagaacaaa 80084
Score = 151 bits (76), Expect = 6e-034
Identities = 115/128 (89%)
Strand = Plus / Plus
Query: 214 ataatgcgcttcttctcaaacccccggaagccaatgattcttgctcttgctcgtccggat 273
|||||||| |||||||| ||||| || ||||| |||||||| |||||||||||||| |||
Sbjct: 79602 ataatgcgattcttctccaaccctcgcaagcccatgattctagctcttgctcgtccagat 79661
Query: 274 ccgaagaagaatatcactactctagtcaaagcatttggtgaacatcgtgaactgagaaat 333
|| |||||||| |||||||| || ||||| ||||||||||||||||||||| ||||||||
Sbjct: 79662 cctaagaagaacatcactacactggtcaaggcatttggtgaacatcgtgaattgagaaat 79721
Query: 334 ttagcaaa 341
||||||||
Sbjct: 79722 ttagcaaa 79729
Score = 95.6 bits (48), Expect = 3e-017
Identities = 93/108 (86%)
Strand = Plus / Plus
Query: 106 cctcctggcatggagtttagtcatatagcaccacatgatgttgacctcgacagtgaggaa 165
|||||||||||||||||||| ||||||| || ||||||||||| | || |||| |||
Sbjct: 79384 cctcctggcatggagtttagccatatagtgcctcatgatgttgatcaggatggtgaagaa 79443
Query: 166 ggaaatggagatggctcaggttcaccagatccacctatttgggctgat 213
| |||| |||||| ||||||||| |||||||||||||||||||||||
Sbjct: 79444 gctaatgaagatggttcaggttcaacagatccacctatttgggctgat 79491
Score = 83.8 bits (42), Expect = 1e-013
Identities = 60/66 (90%)
Strand = Plus / Plus
Query: 8 atgatggttttgatctaactatggcccggaaactcagagcaagaataaggcgtggtgtga 67
|||||||||||||| |||| ||||| ||||||| ||||||||||||| |||||||||||
Sbjct: 79192 atgatggttttgatttaaccatggcaaggaaacttagagcaagaataaagcgtggtgtga 79251
Query: 68 gctgct 73
||||||
Sbjct: 79252 gctgct 79257
Score = 50.1 bits (25), Expect = 0.002
Identities = 43/49 (87%)
Strand = Plus / Plus
Query: 529 tttatcaattgtgcattggttgaaccatttggactcaccttgattgagg 577
|||||||||||||| || | || ||||||||||| |||||||||||||
Sbjct: 80406 tttatcaattgtgcttttatcgagccatttggactaaccttgattgagg 80454
>ref|NT_107233.1| Oryza sativa (japonica cultivar-group)
Length = 6315341
Score = 91.7 bits (46), Expect = 5e-016
Identities = 106/126 (84%)
Strand = Plus / Minus
Query: 396 tgcagctgttttgacttcagcactcaagttaattgataaatatgatctatatggacaagt 455
||||||||||||||| |||| ||| | || |||||| |||||||| | ||||| |||||
Sbjct: 3326949 tgcagctgttttgacatcagtacttacattgattgatgaatatgatttgtatggtcaagt 3326890
Query: 456 ggcataccccaagcaccataagcaatctgaagttcctgatatttatcgtttagctgcgag 515
||||||||| |||| || || || || ||||||||||||||||| |||||||| | |||
Sbjct: 3326889 ggcatacccaaagcgtcacaaacactcggaagttcctgatatttaccgtttagcagtgag 3326830
Query: 516 aacaaa 521
||||||
Sbjct: 3326829 aacaaa 3326824
>dbj|AP003523.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
clone:P0416A11
Length = 171519
Score = 91.7 bits (46), Expect = 5e-016
Identities = 106/126 (84%)
Strand = Plus / Minus
Query: 396 tgcagctgttttgacttcagcactcaagttaattgataaatatgatctatatggacaagt 455
||||||||||||||| |||| ||| | || |||||| |||||||| | ||||| |||||
Sbjct: 143668 tgcagctgttttgacatcagtacttacattgattgatgaatatgatttgtatggtcaagt 143609
Query: 456 ggcataccccaagcaccataagcaatctgaagttcctgatatttatcgtttagctgcgag 515
||||||||| |||| || || || || ||||||||||||||||| |||||||| | |||
Sbjct: 143608 ggcatacccaaagcgtcacaaacactcggaagttcctgatatttaccgtttagcagtgag 143549
Query: 516 aacaaa 521
||||||
Sbjct: 143548 aacaaa 143543
>dbj|AP003568.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
clone:P0017B12
Length = 157424
Score = 91.7 bits (46), Expect = 5e-016
Identities = 106/126 (84%)
Strand = Plus / Minus
Query: 396 tgcagctgttttgacttcagcactcaagttaattgataaatatgatctatatggacaagt 455
||||||||||||||| |||| ||| | || |||||| |||||||| | ||||| |||||
Sbjct: 16562 tgcagctgttttgacatcagtacttacattgattgatgaatatgatttgtatggtcaagt 16503
Query: 456 ggcataccccaagcaccataagcaatctgaagttcctgatatttatcgtttagctgcgag 515
||||||||| |||| || || || || ||||||||||||||||| |||||||| | |||
Sbjct: 16502 ggcatacccaaagcgtcacaaacactcggaagttcctgatatttaccgtttagcagtgag 16443
Query: 516 aacaaa 521
||||||
Sbjct: 16442 aacaaa 16437
>gb|AACV01014670.1| Oryza sativa (japonica cultivar-group) chromosome 6 Ctg014670, whole
genome shotgun sequence
Length = 47074
Score = 91.7 bits (46), Expect = 5e-016
Identities = 106/126 (84%)
Strand = Plus / Minus
Query: 396 tgcagctgttttgacttcagcactcaagttaattgataaatatgatctatatggacaagt 455
||||||||||||||| |||| ||| | || |||||| |||||||| | ||||| |||||
Sbjct: 12242 tgcagctgttttgacatcagtacttacattgattgatgaatatgatttgtatggtcaagt 12183
Query: 456 ggcataccccaagcaccataagcaatctgaagttcctgatatttatcgtttagctgcgag 515
||||||||| |||| || || || || ||||||||||||||||| |||||||| | |||
Sbjct: 12182 ggcatacccaaagcgtcacaaacactcggaagttcctgatatttaccgtttagcagtgag 12123
Query: 516 aacaaa 521
||||||
Sbjct: 12122 aacaaa 12117
>gb|CH401216.1| Oryza sativa (japonica cultivar-group) chromosome 6 scaffold000053 genomic
scaffold, whole genome shotgun sequence
Length = 12033173
Score = 91.7 bits (46), Expect = 5e-016
Identities = 106/126 (84%)
Strand = Plus / Minus
Query: 396 tgcagctgttttgacttcagcactcaagttaattgataaatatgatctatatggacaagt 455
||||||||||||||| |||| ||| | || |||||| |||||||| | ||||| |||||
Sbjct: 7203225 tgcagctgttttgacatcagtacttacattgattgatgaatatgatttgtatggtcaagt 7203166
Query: 456 ggcataccccaagcaccataagcaatctgaagttcctgatatttatcgtttagctgcgag 515
||||||||| |||| || || || || ||||||||||||||||| |||||||| | |||
Sbjct: 7203165 ggcatacccaaagcgtcacaaacactcggaagttcctgatatttaccgtttagcagtgag 7203106
Query: 516 aacaaa 521
||||||
Sbjct: 7203105 aacaaa 7203100
>gb|CM000143.1| Oryza sativa (japonica cultivar-group) chromosome 6, whole genome shotgun
sequence
Length = 29740507
Score = 91.7 bits (46), Expect = 5e-016
Identities = 106/126 (84%)
Strand = Plus / Minus
Query: 396 tgcagctgttttgacttcagcactcaagttaattgataaatatgatctatatggacaagt 455
||||||||||||||| |||| ||| | || |||||| |||||||| | ||||| |||||
Sbjct: 24901962 tgcagctgttttgacatcagtacttacattgattgatgaatatgatttgtatggtcaagt 24901903
Query: 456 ggcataccccaagcaccataagcaatctgaagttcctgatatttatcgtttagctgcgag 515
||||||||| |||| || || || || ||||||||||||||||| |||||||| | |||
Sbjct: 24901902 ggcatacccaaagcgtcacaaacactcggaagttcctgatatttaccgtttagcagtgag 24901843
Query: 516 aacaaa 521
||||||
Sbjct: 24901842 aacaaa 24901837
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
sequence
Length = 30731886
Score = 91.7 bits (46), Expect = 5e-016
Identities = 106/126 (84%)
Strand = Plus / Minus
Query: 396 tgcagctgttttgacttcagcactcaagttaattgataaatatgatctatatggacaagt 455
||||||||||||||| |||| ||| | || |||||| |||||||| | ||||| |||||
Sbjct: 25861464 tgcagctgttttgacatcagtacttacattgattgatgaatatgatttgtatggtcaagt 25861405
Query: 456 ggcataccccaagcaccataagcaatctgaagttcctgatatttatcgtttagctgcgag 515
||||||||| |||| || || || || ||||||||||||||||| |||||||| | |||
Sbjct: 25861404 ggcatacccaaagcgtcacaaacactcggaagttcctgatatttaccgtttagcagtgag 25861345
Query: 516 aacaaa 521
||||||
Sbjct: 25861344 aacaaa 25861339
>dbj|AK063433.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-115-D12, full
insert sequence
Length = 2711
Score = 85.7 bits (43), Expect = 3e-014
Identities = 82/95 (86%)
Strand = Plus / Plus
Query: 427 attgataaatatgatctatatggacaagtggcataccccaagcaccataagcaatctgaa 486
|||||| ||||||| | ||||| |||||||| || |||||||| |||||||| ||||||
Sbjct: 470 attgatgaatatgacttgtatggtcaagtggcttatcccaagcatcataagcactctgaa 529
Query: 487 gttcctgatatttatcgtttagctgcgagaacaaa 521
||||| || ||||||||||||||||| || |||||
Sbjct: 530 gttccagacatttatcgtttagctgccaggacaaa 564
Score = 52.0 bits (26), Expect = 4e-004
Identities = 62/74 (83%)
Strand = Plus / Plus
Query: 196 ccacctatttgggctgatataatgcgcttcttctcaaacccccggaagccaatgattctt 255
||||| |||||| || | |||||||||||||| |||| || ||||||| ||||||||
Sbjct: 239 ccacccatttggtctcagataatgcgcttctttacaaatcctaggaagcctatgattctg 298
Query: 256 gctcttgctcgtcc 269
||| ||||||||||
Sbjct: 299 gctgttgctcgtcc 312
>dbj|AK065273.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002L08, full
insert sequence
Length = 3326
Score = 85.7 bits (43), Expect = 3e-014
Identities = 82/95 (86%)
Strand = Plus / Plus
Query: 427 attgataaatatgatctatatggacaagtggcataccccaagcaccataagcaatctgaa 486
|||||| ||||||| | ||||| |||||||| || |||||||| |||||||| ||||||
Sbjct: 1698 attgatgaatatgacttgtatggtcaagtggcttatcccaagcatcataagcactctgaa 1757
Query: 487 gttcctgatatttatcgtttagctgcgagaacaaa 521
||||| || ||||||||||||||||| || |||||
Sbjct: 1758 gttccagacatttatcgtttagctgccaggacaaa 1792
Score = 52.0 bits (26), Expect = 4e-004
Identities = 62/74 (83%)
Strand = Plus / Plus
Query: 196 ccacctatttgggctgatataatgcgcttcttctcaaacccccggaagccaatgattctt 255
||||| |||||| || | |||||||||||||| |||| || ||||||| ||||||||
Sbjct: 1467 ccacccatttggtctcagataatgcgcttctttacaaatcctaggaagcctatgattctg 1526
Query: 256 gctcttgctcgtcc 269
||| ||||||||||
Sbjct: 1527 gctgttgctcgtcc 1540
>dbj|AK098898.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002B04, full
insert sequence
Length = 3259
Score = 85.7 bits (43), Expect = 3e-014
Identities = 82/95 (86%)
Strand = Plus / Plus
Query: 427 attgataaatatgatctatatggacaagtggcataccccaagcaccataagcaatctgaa 486
|||||| ||||||| | ||||| |||||||| || |||||||| |||||||| ||||||
Sbjct: 1671 attgatgaatatgacttgtatggtcaagtggcttatcccaagcatcataagcactctgaa 1730
Query: 487 gttcctgatatttatcgtttagctgcgagaacaaa 521
||||| || ||||||||||||||||| || |||||
Sbjct: 1731 gttccagacatttatcgtttagctgccaggacaaa 1765
Score = 52.0 bits (26), Expect = 4e-004
Identities = 62/74 (83%)
Strand = Plus / Plus
Query: 196 ccacctatttgggctgatataatgcgcttcttctcaaacccccggaagccaatgattctt 255
||||| |||||| || | |||||||||||||| |||| || ||||||| ||||||||
Sbjct: 1440 ccacccatttggtctcagataatgcgcttctttacaaatcctaggaagcctatgattctg 1499
Query: 256 gctcttgctcgtcc 269
||| ||||||||||
Sbjct: 1500 gctgttgctcgtcc 1513
>dbj|AK121486.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023150H16, full
insert sequence
Length = 3489
Score = 85.7 bits (43), Expect = 3e-014
Identities = 82/95 (86%)
Strand = Plus / Plus
Query: 427 attgataaatatgatctatatggacaagtggcataccccaagcaccataagcaatctgaa 486
|||||| ||||||| | ||||| |||||||| || |||||||| |||||||| ||||||
Sbjct: 1732 attgatgaatatgacttgtatggtcaagtggcttatcccaagcatcataagcactctgaa 1791
Query: 487 gttcctgatatttatcgtttagctgcgagaacaaa 521
||||| || ||||||||||||||||| || |||||
Sbjct: 1792 gttccagacatttatcgtttagctgccaggacaaa 1826
Score = 52.0 bits (26), Expect = 4e-004
Identities = 62/74 (83%)
Strand = Plus / Plus
Query: 196 ccacctatttgggctgatataatgcgcttcttctcaaacccccggaagccaatgattctt 255
||||| |||||| || | |||||||||||||| |||| || ||||||| ||||||||
Sbjct: 1501 ccacccatttggtctcagataatgcgcttctttacaaatcctaggaagcctatgattctg 1560
Query: 256 gctcttgctcgtcc 269
||| ||||||||||
Sbjct: 1561 gctgttgctcgtcc 1574
>dbj|AP004066.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
clone:OJ1572_F02
Length = 93626
Score = 85.7 bits (43), Expect = 3e-014
Identities = 82/95 (86%)
Strand = Plus / Plus
Query: 427 attgataaatatgatctatatggacaagtggcataccccaagcaccataagcaatctgaa 486
|||||| ||||||| | ||||| |||||||| || |||||||| |||||||| ||||||
Sbjct: 85336 attgatgaatatgacttgtatggtcaagtggcttatcccaagcatcataagcactctgaa 85395
Query: 487 gttcctgatatttatcgtttagctgcgagaacaaa 521
||||| || ||||||||||||||||| || |||||
Sbjct: 85396 gttccagacatttatcgtttagctgccaggacaaa 85430
Score = 48.1 bits (24), Expect = 0.006
Identities = 48/56 (85%)
Strand = Plus / Plus
Query: 214 ataatgcgcttcttctcaaacccccggaagccaatgattcttgctcttgctcgtcc 269
|||||||||||||| |||| || ||||||| |||||||| ||| ||||||||||
Sbjct: 84992 ataatgcgcttctttacaaatcctaggaagcctatgattctggctgttgctcgtcc 85047
>gb|AACV01003496.1| Oryza sativa (japonica cultivar-group) chromosome 2 Ctg003496, whole
genome shotgun sequence
Length = 32401
Score = 85.7 bits (43), Expect = 3e-014
Identities = 82/95 (86%)
Strand = Plus / Minus
Query: 427 attgataaatatgatctatatggacaagtggcataccccaagcaccataagcaatctgaa 486
|||||| ||||||| | ||||| |||||||| || |||||||| |||||||| ||||||
Sbjct: 4400 attgatgaatatgacttgtatggtcaagtggcttatcccaagcatcataagcactctgaa 4341
Query: 487 gttcctgatatttatcgtttagctgcgagaacaaa 521
||||| || ||||||||||||||||| || |||||
Sbjct: 4340 gttccagacatttatcgtttagctgccaggacaaa 4306
Score = 48.1 bits (24), Expect = 0.006
Identities = 48/56 (85%)
Strand = Plus / Minus
Query: 214 ataatgcgcttcttctcaaacccccggaagccaatgattcttgctcttgctcgtcc 269
|||||||||||||| |||| || ||||||| |||||||| ||| ||||||||||
Sbjct: 4744 ataatgcgcttctttacaaatcctaggaagcctatgattctggctgttgctcgtcc 4689
>ref|XM_464358.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 3259
Score = 85.7 bits (43), Expect = 3e-014
Identities = 82/95 (86%)
Strand = Plus / Plus
Query: 427 attgataaatatgatctatatggacaagtggcataccccaagcaccataagcaatctgaa 486
|||||| ||||||| | ||||| |||||||| || |||||||| |||||||| ||||||
Sbjct: 1671 attgatgaatatgacttgtatggtcaagtggcttatcccaagcatcataagcactctgaa 1730
Query: 487 gttcctgatatttatcgtttagctgcgagaacaaa 521
||||| || ||||||||||||||||| || |||||
Sbjct: 1731 gttccagacatttatcgtttagctgccaggacaaa 1765
Score = 52.0 bits (26), Expect = 4e-004
Identities = 62/74 (83%)
Strand = Plus / Plus
Query: 196 ccacctatttgggctgatataatgcgcttcttctcaaacccccggaagccaatgattctt 255
||||| |||||| || | |||||||||||||| |||| || ||||||| ||||||||
Sbjct: 1440 ccacccatttggtctcagataatgcgcttctttacaaatcctaggaagcctatgattctg 1499
Query: 256 gctcttgctcgtcc 269
||| ||||||||||
Sbjct: 1500 gctgttgctcgtcc 1513
>ref|NT_107177.1| Oryza sativa (japonica cultivar-group)
Length = 1341590
Score = 85.7 bits (43), Expect = 3e-014
Identities = 82/95 (86%)
Strand = Plus / Plus
Query: 427 attgataaatatgatctatatggacaagtggcataccccaagcaccataagcaatctgaa 486
|||||| ||||||| | ||||| |||||||| || |||||||| |||||||| ||||||
Sbjct: 85336 attgatgaatatgacttgtatggtcaagtggcttatcccaagcatcataagcactctgaa 85395
Query: 487 gttcctgatatttatcgtttagctgcgagaacaaa 521
||||| || ||||||||||||||||| || |||||
Sbjct: 85396 gttccagacatttatcgtttagctgccaggacaaa 85430
Score = 48.1 bits (24), Expect = 0.006
Identities = 48/56 (85%)
Strand = Plus / Plus
Query: 214 ataatgcgcttcttctcaaacccccggaagccaatgattcttgctcttgctcgtcc 269
|||||||||||||| |||| || ||||||| |||||||| ||| ||||||||||
Sbjct: 84992 ataatgcgcttctttacaaatcctaggaagcctatgattctggctgttgctcgtcc 85047
>ref|XM_506734.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1572_F02.13 mRNA
Length = 3490
Score = 85.7 bits (43), Expect = 3e-014
Identities = 82/95 (86%)
Strand = Plus / Plus
Query: 427 attgataaatatgatctatatggacaagtggcataccccaagcaccataagcaatctgaa 486
|||||| ||||||| | ||||| |||||||| || |||||||| |||||||| ||||||
Sbjct: 1733 attgatgaatatgacttgtatggtcaagtggcttatcccaagcatcataagcactctgaa 1792
Query: 487 gttcctgatatttatcgtttagctgcgagaacaaa 521
||||| || ||||||||||||||||| || |||||
Sbjct: 1793 gttccagacatttatcgtttagctgccaggacaaa 1827
Score = 52.0 bits (26), Expect = 4e-004
Identities = 62/74 (83%)
Strand = Plus / Plus
Query: 196 ccacctatttgggctgatataatgcgcttcttctcaaacccccggaagccaatgattctt 255
||||| |||||| || | |||||||||||||| |||| || ||||||| ||||||||
Sbjct: 1502 ccacccatttggtctcagataatgcgcttctttacaaatcctaggaagcctatgattctg 1561
Query: 256 gctcttgctcgtcc 269
||| ||||||||||
Sbjct: 1562 gctgttgctcgtcc 1575
>ref|XM_506735.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1572_F02.13 mRNA
Length = 3327
Score = 85.7 bits (43), Expect = 3e-014
Identities = 82/95 (86%)
Strand = Plus / Plus
Query: 427 attgataaatatgatctatatggacaagtggcataccccaagcaccataagcaatctgaa 486
|||||| ||||||| | ||||| |||||||| || |||||||| |||||||| ||||||
Sbjct: 1699 attgatgaatatgacttgtatggtcaagtggcttatcccaagcatcataagcactctgaa 1758
Query: 487 gttcctgatatttatcgtttagctgcgagaacaaa 521
||||| || ||||||||||||||||| || |||||
Sbjct: 1759 gttccagacatttatcgtttagctgccaggacaaa 1793
Score = 52.0 bits (26), Expect = 4e-004
Identities = 62/74 (83%)
Strand = Plus / Plus
Query: 196 ccacctatttgggctgatataatgcgcttcttctcaaacccccggaagccaatgattctt 255
||||| |||||| || | |||||||||||||| |||| || ||||||| ||||||||
Sbjct: 1468 ccacccatttggtctcagataatgcgcttctttacaaatcctaggaagcctatgattctg 1527
Query: 256 gctcttgctcgtcc 269
||| ||||||||||
Sbjct: 1528 gctgttgctcgtcc 1541
>gb|CH401169.1| Oryza sativa (japonica cultivar-group) chromosome 2 scaffold000006 genomic
scaffold, whole genome shotgun sequence
Length = 13452964
Score = 85.7 bits (43), Expect = 3e-014
Identities = 82/95 (86%)
Strand = Plus / Plus
Query: 427 attgataaatatgatctatatggacaagtggcataccccaagcaccataagcaatctgaa 486
|||||| ||||||| | ||||| |||||||| || |||||||| |||||||| ||||||
Sbjct: 4796543 attgatgaatatgacttgtatggtcaagtggcttatcccaagcatcataagcactctgaa 4796602
Query: 487 gttcctgatatttatcgtttagctgcgagaacaaa 521
||||| || ||||||||||||||||| || |||||
Sbjct: 4796603 gttccagacatttatcgtttagctgccaggacaaa 4796637
Score = 48.1 bits (24), Expect = 0.006
Identities = 48/56 (85%)
Strand = Plus / Plus
Query: 214 ataatgcgcttcttctcaaacccccggaagccaatgattcttgctcttgctcgtcc 269
|||||||||||||| |||| || ||||||| |||||||| ||| ||||||||||
Sbjct: 4796199 ataatgcgcttctttacaaatcctaggaagcctatgattctggctgttgctcgtcc 4796254
>gb|CM000139.1| Oryza sativa (japonica cultivar-group) chromosome 2, whole genome shotgun
sequence
Length = 36016269
Score = 85.7 bits (43), Expect = 3e-014
Identities = 82/95 (86%)
Strand = Plus / Plus
Query: 427 attgataaatatgatctatatggacaagtggcataccccaagcaccataagcaatctgaa 486
|||||| ||||||| | ||||| |||||||| || |||||||| |||||||| ||||||
Sbjct: 4796543 attgatgaatatgacttgtatggtcaagtggcttatcccaagcatcataagcactctgaa 4796602
Query: 487 gttcctgatatttatcgtttagctgcgagaacaaa 521
||||| || ||||||||||||||||| || |||||
Sbjct: 4796603 gttccagacatttatcgtttagctgccaggacaaa 4796637
Score = 48.1 bits (24), Expect = 0.006
Identities = 48/56 (85%)
Strand = Plus / Plus
Query: 214 ataatgcgcttcttctcaaacccccggaagccaatgattcttgctcttgctcgtcc 269
|||||||||||||| |||| || ||||||| |||||||| ||| ||||||||||
Sbjct: 4796199 ataatgcgcttctttacaaatcctaggaagcctatgattctggctgttgctcgtcc 4796254
Score = 42.1 bits (21), Expect = 0.39
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 115 atggagtttagtcatatagca 135
|||||||||||||||||||||
Sbjct: 17287788 atggagtttagtcatatagca 17287768
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
sequence
Length = 35954743
Score = 85.7 bits (43), Expect = 3e-014
Identities = 82/95 (86%)
Strand = Plus / Plus
Query: 427 attgataaatatgatctatatggacaagtggcataccccaagcaccataagcaatctgaa 486
|||||| ||||||| | ||||| |||||||| || |||||||| |||||||| ||||||
Sbjct: 4713264 attgatgaatatgacttgtatggtcaagtggcttatcccaagcatcataagcactctgaa 4713323
Query: 487 gttcctgatatttatcgtttagctgcgagaacaaa 521
||||| || ||||||||||||||||| || |||||
Sbjct: 4713324 gttccagacatttatcgtttagctgccaggacaaa 4713358
Score = 48.1 bits (24), Expect = 0.006
Identities = 48/56 (85%)
Strand = Plus / Plus
Query: 214 ataatgcgcttcttctcaaacccccggaagccaatgattcttgctcttgctcgtcc 269
|||||||||||||| |||| || ||||||| |||||||| ||| ||||||||||
Sbjct: 4712920 ataatgcgcttctttacaaatcctaggaagcctatgattctggctgttgctcgtcc 4712975
Score = 42.1 bits (21), Expect = 0.39
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 115 atggagtttagtcatatagca 135
|||||||||||||||||||||
Sbjct: 17603073 atggagtttagtcatatagca 17603053
>gb|CB667221.1|CB667221 OSJNEd14H08.f OSJNEd Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEd14H08 5', mRNA sequence
Length = 846
Score = 54.0 bits (27), Expect = 1e-004
Identities = 43/49 (87%)
Strand = Plus / Plus
Query: 610 cgaaatggtgggcctgtnnacatacatcgggttcttgataatggaattc 658
|||||||||||||| || | ||||||||||||||||| ||||| ||||
Sbjct: 7 cgaaatggtgggcccgttgatatacatcgggttcttgacaatggtattc 55
>gb|AU197546.1|AU197546 AU197546 Rice callus (2001) Oryza sativa (japonica cultivar-group)
cDNA clone C30029, mRNA sequence
Length = 424
Score = 52.0 bits (26), Expect = 4e-004
Identities = 62/74 (83%)
Strand = Plus / Minus
Query: 196 ccacctatttgggctgatataatgcgcttcttctcaaacccccggaagccaatgattctt 255
||||| |||||| || | |||||||||||||| |||| || ||||||| ||||||||
Sbjct: 166 ccacccatttggtctcagataatgcgcttctttacaaatcctaggaagcctatgattctg 107
Query: 256 gctcttgctcgtcc 269
||| ||||||||||
Sbjct: 106 gctgttgctcgtcc 93
>dbj|AG209514.1| Oryza sativa (japonica cultivar-group) DNA, clone:NE7022_0_101_1A,
3' flanking sequence of Tos17 insertion in rice strain
NE7022, genomic survey sequence
Length = 724
Score = 46.1 bits (23), Expect = 0.025
Identities = 59/71 (83%)
Strand = Plus / Plus
Query: 241 aagccaatgattcttgctcttgctcgtccggatccgaagaagaatatcactactctagtc 300
|||||||||||||| ||||| | | || ||||| |||||||| ||||| || || |||
Sbjct: 566 aagccaatgattctggctctgtcaagacctgatccaaagaagaacatcaccacccttgtc 625
Query: 301 aaagcatttgg 311
|||||||||||
Sbjct: 626 aaagcatttgg 636
>gb|AC091090.1|AC091090 Oryza sativa (japonica cultivar-group) chromosome 1 clone P0678F11, ***
SEQUENCING IN PROGRESS ***, 3 ordered pieces
Length = 155574
Score = 46.1 bits (23), Expect = 0.025
Identities = 59/71 (83%)
Strand = Plus / Plus
Query: 241 aagccaatgattcttgctcttgctcgtccggatccgaagaagaatatcactactctagtc 300
|||||||||||||| ||||| | | || ||||| |||||||| ||||| || || |||
Sbjct: 114935 aagccaatgattctggctctgtcaagacctgatccaaagaagaacatcaccacccttgtc 114994
Query: 301 aaagcatttgg 311
|||||||||||
Sbjct: 114995 aaagcatttgg 115005
>dbj|AK121341.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023120M11, full
insert sequence
Length = 3825
Score = 46.1 bits (23), Expect = 0.025
Identities = 59/71 (83%)
Strand = Plus / Plus
Query: 241 aagccaatgattcttgctcttgctcgtccggatccgaagaagaatatcactactctagtc 300
|||||||||||||| ||||| | | || ||||| |||||||| ||||| || || |||
Sbjct: 1735 aagccaatgattctggctctgtcaagacctgatccaaagaagaacatcaccacccttgtc 1794
Query: 301 aaagcatttgg 311
|||||||||||
Sbjct: 1795 aaagcatttgg 1805
>gb|AACV01002933.1| Oryza sativa (japonica cultivar-group) chromosome 1 Ctg002933, whole
genome shotgun sequence
Length = 31042
Score = 46.1 bits (23), Expect = 0.025
Identities = 59/71 (83%)
Strand = Plus / Plus
Query: 241 aagccaatgattcttgctcttgctcgtccggatccgaagaagaatatcactactctagtc 300
|||||||||||||| ||||| | | || ||||| |||||||| ||||| || || |||
Sbjct: 10187 aagccaatgattctggctctgtcaagacctgatccaaagaagaacatcaccacccttgtc 10246
Query: 301 aaagcatttgg 311
|||||||||||
Sbjct: 10247 aaagcatttgg 10257
>dbj|BA000010.8| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43342410
Score = 46.1 bits (23), Expect = 0.025
Identities = 59/71 (83%)
Strand = Plus / Minus
Query: 241 aagccaatgattcttgctcttgctcgtccggatccgaagaagaatatcactactctagtc 300
|||||||||||||| ||||| | | || ||||| |||||||| ||||| || || |||
Sbjct: 40178226 aagccaatgattctggctctgtcaagacctgatccaaagaagaacatcaccacccttgtc 40178167
Query: 301 aaagcatttgg 311
|||||||||||
Sbjct: 40178166 aaagcatttgg 40178156
>ref|XM_463619.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 3303
Score = 46.1 bits (23), Expect = 0.025
Identities = 59/71 (83%)
Strand = Plus / Plus
Query: 241 aagccaatgattcttgctcttgctcgtccggatccgaagaagaatatcactactctagtc 300
|||||||||||||| ||||| | | || ||||| |||||||| ||||| || || |||
Sbjct: 1552 aagccaatgattctggctctgtcaagacctgatccaaagaagaacatcaccacccttgtc 1611
Query: 301 aaagcatttgg 311
|||||||||||
Sbjct: 1612 aaagcatttgg 1622
>ref|NT_079927.2| Oryza sativa (japonica cultivar-group)
Length = 14818989
Score = 46.1 bits (23), Expect = 0.025
Identities = 59/71 (83%)
Strand = Plus / Minus
Query: 241 aagccaatgattcttgctcttgctcgtccggatccgaagaagaatatcactactctagtc 300
|||||||||||||| ||||| | | || ||||| |||||||| ||||| || || |||
Sbjct: 14625609 aagccaatgattctggctctgtcaagacctgatccaaagaagaacatcaccacccttgtc 14625550
Query: 301 aaagcatttgg 311
|||||||||||
Sbjct: 14625549 aaagcatttgg 14625539
>dbj|AP003437.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
clone:P0678F11
Length = 154292
Score = 46.1 bits (23), Expect = 0.025
Identities = 59/71 (83%)
Strand = Plus / Minus
Query: 241 aagccaatgattcttgctcttgctcgtccggatccgaagaagaatatcactactctagtc 300
|||||||||||||| ||||| | | || ||||| |||||||| ||||| || || |||
Sbjct: 40640 aagccaatgattctggctctgtcaagacctgatccaaagaagaacatcaccacccttgtc 40581
Query: 301 aaagcatttgg 311
|||||||||||
Sbjct: 40580 aaagcatttgg 40570
>gb|CH401168.1| Oryza sativa (japonica cultivar-group) chromosome 1 scaffold000005 genomic
scaffold, whole genome shotgun sequence
Length = 17394610
Score = 46.1 bits (23), Expect = 0.025
Identities = 59/71 (83%)
Strand = Plus / Minus
Query: 241 aagccaatgattcttgctcttgctcgtccggatccgaagaagaatatcactactctagtc 300
|||||||||||||| ||||| | | || ||||| |||||||| ||||| || || |||
Sbjct: 14385847 aagccaatgattctggctctgtcaagacctgatccaaagaagaacatcaccacccttgtc 14385788
Query: 301 aaagcatttgg 311
|||||||||||
Sbjct: 14385787 aaagcatttgg 14385777
>gb|CM000138.1| Oryza sativa (japonica cultivar-group) chromosome 1, whole genome shotgun
sequence
Length = 42596331
Score = 46.1 bits (23), Expect = 0.025
Identities = 59/71 (83%)
Strand = Plus / Minus
Query: 241 aagccaatgattcttgctcttgctcgtccggatccgaagaagaatatcactactctagtc 300
|||||||||||||| ||||| | | || ||||| |||||||| ||||| || || |||
Sbjct: 39587568 aagccaatgattctggctctgtcaagacctgatccaaagaagaacatcaccacccttgtc 39587509
Query: 301 aaagcatttgg 311
|||||||||||
Sbjct: 39587508 aaagcatttgg 39587498
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43261740
Score = 46.1 bits (23), Expect = 0.025
Identities = 59/71 (83%)
Strand = Plus / Minus
Query: 241 aagccaatgattcttgctcttgctcgtccggatccgaagaagaatatcactactctagtc 300
|||||||||||||| ||||| | | || ||||| |||||||| ||||| || || |||
Sbjct: 40097556 aagccaatgattctggctctgtcaagacctgatccaaagaagaacatcaccacccttgtc 40097497
Query: 301 aaagcatttgg 311
|||||||||||
Sbjct: 40097496 aaagcatttgg 40097486
>dbj|AP004773.1| Oryza sativa (japonica cultivar-group) chromosome 2 clone P0416F07, ***
SEQUENCING IN PROGRESS ***
Length = 136073
Score = 42.1 bits (21), Expect = 0.39
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 115 atggagtttagtcatatagca 135
|||||||||||||||||||||
Sbjct: 95873 atggagtttagtcatatagca 95893
>dbj|D45890.1|RICSPS1 Oryza sativa DNA for sucrose phosphate synthase, complete cds
Length = 9181
Score = 42.1 bits (21), Expect = 0.39
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 271 gatccgaagaagaatatcactactctagtcaaagcatttgg 311
||||| |||||||| ||||| || || ||||||||||||||
Sbjct: 5811 gatccaaagaagaacatcaccacccttgtcaaagcatttgg 5851
>dbj|AP004086.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
clone:OJ1288_D09
Length = 124026
Score = 42.1 bits (21), Expect = 0.39
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 115 atggagtttagtcatatagca 135
|||||||||||||||||||||
Sbjct: 72991 atggagtttagtcatatagca 72971
>gb|AACV01004383.1| Oryza sativa (japonica cultivar-group) chromosome 2 Ctg004383, whole
genome shotgun sequence
Length = 27976
Score = 42.1 bits (21), Expect = 0.39
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 115 atggagtttagtcatatagca 135
|||||||||||||||||||||
Sbjct: 14664 atggagtttagtcatatagca 14644
>ref|NT_107179.1| Oryza sativa (japonica cultivar-group)
Length = 4877845
Score = 42.1 bits (21), Expect = 0.39
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 115 atggagtttagtcatatagca 135
|||||||||||||||||||||
Sbjct: 3665260 atggagtttagtcatatagca 3665240
>gb|CH401170.1| Oryza sativa (japonica cultivar-group) chromosome 2 scaffold000007 genomic
scaffold, whole genome shotgun sequence
Length = 22563205
Score = 42.1 bits (21), Expect = 0.39
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 115 atggagtttagtcatatagca 135
|||||||||||||||||||||
Sbjct: 3834724 atggagtttagtcatatagca 3834704
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 947,505
Number of Sequences: 438736
Number of extensions: 947505
Number of successful extensions: 4973
Number of sequences better than 0.5: 50
Number of HSP's better than 0.5 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 4620
Number of HSP's gapped (non-prelim): 329
length of query: 683
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 662
effective length of database: 2,791,206,460
effective search space: 1847778676520
effective search space used: 1847778676520
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)