BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QCM12g02.yg.2.1
(480 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|AK099782.1| Oryza sativa (japonica cultivar-group) cDNA... 555 e-156
dbj|AK120195.1| Oryza sativa (japonica cultivar-group) cDNA... 555 e-156
dbj|AK120402.1| Oryza sativa (japonica cultivar-group) cDNA... 555 e-156
gb|AACV01002367.1| Oryza sativa (japonica cultivar-group) c... 555 e-156
dbj|BA000010.8| Oryza sativa (japonica cultivar-group) geno... 555 e-156
ref|NM_191270.1| Oryza sativa (japonica cultivar-group), p... 555 e-156
ref|NT_079927.2| Oryza sativa (japonica cultivar-group) 555 e-156
dbj|AP003249.3| Oryza sativa (japonica cultivar-group) geno... 555 e-156
dbj|AP003268.4| Oryza sativa (japonica cultivar-group) geno... 555 e-156
gb|CH401168.1| Oryza sativa (japonica cultivar-group) chrom... 555 e-156
gb|CM000138.1| Oryza sativa (japonica cultivar-group) chrom... 555 e-156
dbj|AP008207.1| Oryza sativa (japonica cultivar-group) geno... 555 e-156
dbj|AK099834.1| Oryza sativa (japonica cultivar-group) cDNA... 541 e-151
dbj|AK060407.1| Oryza sativa (japonica cultivar-group) cDNA... 194 3e-047
gb|AACV01002091.1| Oryza sativa (japonica cultivar-group) c... 194 3e-047
ref|NM_191973.1| Oryza sativa (japonica cultivar-group), p... 194 3e-047
dbj|AP003223.3| Oryza sativa (japonica cultivar-group) geno... 194 3e-047
dbj|AP003264.3| Oryza sativa (japonica cultivar-group) geno... 194 3e-047
gb|CB662461.1|CB662461 OSJNEd06I07.f OSJNEd Oryza sativa (j... 70 1e-009
gb|CB662404.1|CB662404 OSJNEd06G07.f OSJNEd Oryza sativa (j... 62 3e-007
dbj|AK059569.1| Oryza sativa (japonica cultivar-group) cDNA... 50 0.001
dbj|AK071856.1| Oryza sativa (japonica cultivar-group) cDNA... 50 0.001
ref|XM_550490.1| Oryza sativa (japonica cultivar-group), mRNA 50 0.001
dbj|BA000029.3| Oryza sativa (japonica cultivar-group) mito... 48 0.004
dbj|AK064446.1| Oryza sativa (japonica cultivar-group) cDNA... 46 0.017
gb|AACV01001413.1| Oryza sativa (japonica cultivar-group) c... 46 0.017
ref|NM_193211.1| Oryza sativa (japonica cultivar-group), p... 46 0.017
ref|NT_079926.2| Oryza sativa (japonica cultivar-group) 46 0.017
dbj|AP003447.2| Oryza sativa (japonica cultivar-group) geno... 46 0.017
dbj|AP003445.2| Oryza sativa (japonica cultivar-group) geno... 46 0.017
gb|CH401166.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.017
gb|CB684140.1|CB684140 OSJNEf13F24.f OSJNEf Oryza sativa (j... 44 0.068
dbj|AG209222.1| Oryza sativa (japonica cultivar-group) DNA,... 42 0.27
dbj|AG209650.1| Oryza sativa (japonica cultivar-group) DNA,... 42 0.27
dbj|AG211728.1| Oryza sativa (japonica cultivar-group) DNA,... 42 0.27
dbj|AP003454.1| Oryza sativa (japonica cultivar-group) chro... 42 0.27
dbj|AK100271.1| Oryza sativa (japonica cultivar-group) cDNA... 42 0.27
gb|AACV01013162.1| Oryza sativa (japonica cultivar-group) c... 42 0.27
dbj|AP007226.1| Oryza sativa (japonica cultivar-group) geno... 42 0.27
dbj|AP007257.2| Oryza sativa (japonica cultivar-group) geno... 42 0.27
gb|CH401209.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.27
gb|CM000143.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.27
dbj|AP008212.1| Oryza sativa (japonica cultivar-group) geno... 42 0.27
>dbj|AK099782.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013095O05, full
insert sequence
Length = 5774
Score = 555 bits (280), Expect = e-156
Identities = 409/454 (90%)
Strand = Plus / Minus
Query: 1 acactgttttcaaccaatcaaaaccagacggattaaaagcaaatggagccataatccatg 60
|||||||||||||||||||||| ||||| ||||||||||||||||||||||| |||||||
Sbjct: 4816 acactgttttcaaccaatcaaagccagatggattaaaagcaaatggagccatgatccatg 4757
Query: 61 ataccaccagaaaccagctagatatatnnnnnnttatgtaaacaagtgtattcttggcaa 120
||||||| ||||||||||||||||| |||||||||||||||||| | | ||||
Sbjct: 4756 ataccactagaaaccagctagatatcatcatgattatgtaaacaagtgtatcccttgcaa 4697
Query: 121 taacactgtgtgcagcatacacagtcaatattattccaagctctattgcctttatgaagt 180
| |||||||| || |||||||||||||||| ||||||||| |||||||||||||||||||
Sbjct: 4696 tcacactgtgagctgcatacacagtcaatactattccaagttctattgcctttatgaagt 4637
Query: 181 ggcccctagcatacagcctgtaattttcagcaaaactcttgtgctgcacaacaaaaccac 240
||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 4636 ggctcctagcatacagcctgtaattttcagcaaaactcttatgctgcacaacaaaaccac 4577
Query: 241 ggccagtagcacggtattttgcaccaccatgaaggattgtccggccatagtaatggctct 300
||||||||||||| || || ||||| |||||||| ||||||||||||||||||||||| |
Sbjct: 4576 ggccagtagcacgatacttagcaccgccatgaagaattgtccggccatagtaatggcttt 4517
Query: 301 tagttcccatggaaaatgtgtagaacacagatgaaaaattcatttgcattgtgaagaaat 360
| || ||||||||||||||||||||||| || ||||| |||||||||| ||||| ||||
Sbjct: 4516 tcgtccccatggaaaatgtgtagaacacggacgaaaacatcatttgcatagtgaaaaaat 4457
Query: 361 cccagatagcaggtaggaaaccttgttcaagagagttctctataatcattggcaatgcag 420
|||||| |||||| || ||||| |||||||||||||||||||||||||||||||| ||||
Sbjct: 4456 cccagacagcaggcagaaaaccctgttcaagagagttctctataatcattggcaaggcag 4397
Query: 421 tgaagaagccaagctgtatgatgaactgctgatt 454
|||||| |||||||||||||| || ||||||||
Sbjct: 4396 tgaagaggccaagctgtatgacaaattgctgatt 4363
>dbj|AK120195.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013036H01, full
insert sequence
Length = 5949
Score = 555 bits (280), Expect = e-156
Identities = 409/454 (90%)
Strand = Plus / Minus
Query: 1 acactgttttcaaccaatcaaaaccagacggattaaaagcaaatggagccataatccatg 60
|||||||||||||||||||||| ||||| ||||||||||||||||||||||| |||||||
Sbjct: 4720 acactgttttcaaccaatcaaagccagatggattaaaagcaaatggagccatgatccatg 4661
Query: 61 ataccaccagaaaccagctagatatatnnnnnnttatgtaaacaagtgtattcttggcaa 120
||||||| ||||||||||||||||| |||||||||||||||||| | | ||||
Sbjct: 4660 ataccactagaaaccagctagatatcatcatgattatgtaaacaagtgtatcccttgcaa 4601
Query: 121 taacactgtgtgcagcatacacagtcaatattattccaagctctattgcctttatgaagt 180
| |||||||| || |||||||||||||||| ||||||||| |||||||||||||||||||
Sbjct: 4600 tcacactgtgagctgcatacacagtcaatactattccaagttctattgcctttatgaagt 4541
Query: 181 ggcccctagcatacagcctgtaattttcagcaaaactcttgtgctgcacaacaaaaccac 240
||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 4540 ggctcctagcatacagcctgtaattttcagcaaaactcttatgctgcacaacaaaaccac 4481
Query: 241 ggccagtagcacggtattttgcaccaccatgaaggattgtccggccatagtaatggctct 300
||||||||||||| || || ||||| |||||||| ||||||||||||||||||||||| |
Sbjct: 4480 ggccagtagcacgatacttagcaccgccatgaagaattgtccggccatagtaatggcttt 4421
Query: 301 tagttcccatggaaaatgtgtagaacacagatgaaaaattcatttgcattgtgaagaaat 360
| || ||||||||||||||||||||||| || ||||| |||||||||| ||||| ||||
Sbjct: 4420 tcgtccccatggaaaatgtgtagaacacggacgaaaacatcatttgcatagtgaaaaaat 4361
Query: 361 cccagatagcaggtaggaaaccttgttcaagagagttctctataatcattggcaatgcag 420
|||||| |||||| || ||||| |||||||||||||||||||||||||||||||| ||||
Sbjct: 4360 cccagacagcaggcagaaaaccctgttcaagagagttctctataatcattggcaaggcag 4301
Query: 421 tgaagaagccaagctgtatgatgaactgctgatt 454
|||||| |||||||||||||| || ||||||||
Sbjct: 4300 tgaagaggccaagctgtatgacaaattgctgatt 4267
>dbj|AK120402.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013088I17, full
insert sequence
Length = 5396
Score = 555 bits (280), Expect = e-156
Identities = 409/454 (90%)
Strand = Plus / Minus
Query: 1 acactgttttcaaccaatcaaaaccagacggattaaaagcaaatggagccataatccatg 60
|||||||||||||||||||||| ||||| ||||||||||||||||||||||| |||||||
Sbjct: 4405 acactgttttcaaccaatcaaagccagatggattaaaagcaaatggagccatgatccatg 4346
Query: 61 ataccaccagaaaccagctagatatatnnnnnnttatgtaaacaagtgtattcttggcaa 120
||||||| ||||||||||||||||| |||||||||||||||||| | | ||||
Sbjct: 4345 ataccactagaaaccagctagatatcatcatgattatgtaaacaagtgtatcccttgcaa 4286
Query: 121 taacactgtgtgcagcatacacagtcaatattattccaagctctattgcctttatgaagt 180
| |||||||| || |||||||||||||||| ||||||||| |||||||||||||||||||
Sbjct: 4285 tcacactgtgagctgcatacacagtcaatactattccaagttctattgcctttatgaagt 4226
Query: 181 ggcccctagcatacagcctgtaattttcagcaaaactcttgtgctgcacaacaaaaccac 240
||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 4225 ggctcctagcatacagcctgtaattttcagcaaaactcttatgctgcacaacaaaaccac 4166
Query: 241 ggccagtagcacggtattttgcaccaccatgaaggattgtccggccatagtaatggctct 300
||||||||||||| || || ||||| |||||||| ||||||||||||||||||||||| |
Sbjct: 4165 ggccagtagcacgatacttagcaccgccatgaagaattgtccggccatagtaatggcttt 4106
Query: 301 tagttcccatggaaaatgtgtagaacacagatgaaaaattcatttgcattgtgaagaaat 360
| || ||||||||||||||||||||||| || ||||| |||||||||| ||||| ||||
Sbjct: 4105 tcgtccccatggaaaatgtgtagaacacggacgaaaacatcatttgcatagtgaaaaaat 4046
Query: 361 cccagatagcaggtaggaaaccttgttcaagagagttctctataatcattggcaatgcag 420
|||||| |||||| || ||||| |||||||||||||||||||||||||||||||| ||||
Sbjct: 4045 cccagacagcaggcagaaaaccctgttcaagagagttctctataatcattggcaaggcag 3986
Query: 421 tgaagaagccaagctgtatgatgaactgctgatt 454
|||||| |||||||||||||| || ||||||||
Sbjct: 3985 tgaagaggccaagctgtatgacaaattgctgatt 3952
>gb|AACV01002367.1| Oryza sativa (japonica cultivar-group) chromosome 1 Ctg002367, whole
genome shotgun sequence
Length = 23038
Score = 555 bits (280), Expect = e-156
Identities = 409/454 (90%)
Strand = Plus / Minus
Query: 1 acactgttttcaaccaatcaaaaccagacggattaaaagcaaatggagccataatccatg 60
|||||||||||||||||||||| ||||| ||||||||||||||||||||||| |||||||
Sbjct: 12657 acactgttttcaaccaatcaaagccagatggattaaaagcaaatggagccatgatccatg 12598
Query: 61 ataccaccagaaaccagctagatatatnnnnnnttatgtaaacaagtgtattcttggcaa 120
||||||| ||||||||||||||||| |||||||||||||||||| | | ||||
Sbjct: 12597 ataccactagaaaccagctagatatcatcatgattatgtaaacaagtgtatcccttgcaa 12538
Query: 121 taacactgtgtgcagcatacacagtcaatattattccaagctctattgcctttatgaagt 180
| |||||||| || |||||||||||||||| ||||||||| |||||||||||||||||||
Sbjct: 12537 tcacactgtgagctgcatacacagtcaatactattccaagttctattgcctttatgaagt 12478
Query: 181 ggcccctagcatacagcctgtaattttcagcaaaactcttgtgctgcacaacaaaaccac 240
||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 12477 ggctcctagcatacagcctgtaattttcagcaaaactcttatgctgcacaacaaaaccac 12418
Query: 241 ggccagtagcacggtattttgcaccaccatgaaggattgtccggccatagtaatggctct 300
||||||||||||| || || ||||| |||||||| ||||||||||||||||||||||| |
Sbjct: 12417 ggccagtagcacgatacttagcaccgccatgaagaattgtccggccatagtaatggcttt 12358
Query: 301 tagttcccatggaaaatgtgtagaacacagatgaaaaattcatttgcattgtgaagaaat 360
| || ||||||||||||||||||||||| || ||||| |||||||||| ||||| ||||
Sbjct: 12357 tcgtccccatggaaaatgtgtagaacacggacgaaaacatcatttgcatagtgaaaaaat 12298
Query: 361 cccagatagcaggtaggaaaccttgttcaagagagttctctataatcattggcaatgcag 420
|||||| |||||| || ||||| |||||||||||||||||||||||||||||||| ||||
Sbjct: 12297 cccagacagcaggcagaaaaccctgttcaagagagttctctataatcattggcaaggcag 12238
Query: 421 tgaagaagccaagctgtatgatgaactgctgatt 454
|||||| |||||||||||||| || ||||||||
Sbjct: 12237 tgaagaggccaagctgtatgacaaattgctgatt 12204
>dbj|BA000010.8| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43342410
Score = 555 bits (280), Expect = e-156
Identities = 409/454 (90%)
Strand = Plus / Plus
Query: 1 acactgttttcaaccaatcaaaaccagacggattaaaagcaaatggagccataatccatg 60
|||||||||||||||||||||| ||||| ||||||||||||||||||||||| |||||||
Sbjct: 31717386 acactgttttcaaccaatcaaagccagatggattaaaagcaaatggagccatgatccatg 31717445
Query: 61 ataccaccagaaaccagctagatatatnnnnnnttatgtaaacaagtgtattcttggcaa 120
||||||| ||||||||||||||||| |||||||||||||||||| | | ||||
Sbjct: 31717446 ataccactagaaaccagctagatatcatcatgattatgtaaacaagtgtatcccttgcaa 31717505
Query: 121 taacactgtgtgcagcatacacagtcaatattattccaagctctattgcctttatgaagt 180
| |||||||| || |||||||||||||||| ||||||||| |||||||||||||||||||
Sbjct: 31717506 tcacactgtgagctgcatacacagtcaatactattccaagttctattgcctttatgaagt 31717565
Query: 181 ggcccctagcatacagcctgtaattttcagcaaaactcttgtgctgcacaacaaaaccac 240
||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 31717566 ggctcctagcatacagcctgtaattttcagcaaaactcttatgctgcacaacaaaaccac 31717625
Query: 241 ggccagtagcacggtattttgcaccaccatgaaggattgtccggccatagtaatggctct 300
||||||||||||| || || ||||| |||||||| ||||||||||||||||||||||| |
Sbjct: 31717626 ggccagtagcacgatacttagcaccgccatgaagaattgtccggccatagtaatggcttt 31717685
Query: 301 tagttcccatggaaaatgtgtagaacacagatgaaaaattcatttgcattgtgaagaaat 360
| || ||||||||||||||||||||||| || ||||| |||||||||| ||||| ||||
Sbjct: 31717686 tcgtccccatggaaaatgtgtagaacacggacgaaaacatcatttgcatagtgaaaaaat 31717745
Query: 361 cccagatagcaggtaggaaaccttgttcaagagagttctctataatcattggcaatgcag 420
|||||| |||||| || ||||| |||||||||||||||||||||||||||||||| ||||
Sbjct: 31717746 cccagacagcaggcagaaaaccctgttcaagagagttctctataatcattggcaaggcag 31717805
Query: 421 tgaagaagccaagctgtatgatgaactgctgatt 454
|||||| |||||||||||||| || ||||||||
Sbjct: 31717806 tgaagaggccaagctgtatgacaaattgctgatt 31717839
Score = 194 bits (98), Expect = 3e-047
Identities = 266/322 (82%)
Strand = Plus / Plus
Query: 134 agcatacacagtcaatattattccaagctctattgcctttatgaagtggcccctagcata 193
|||||| | ||||||||| | |||||||||||||| || |||||||||| | ||||||
Sbjct: 27681964 agcataaagagtcaatatcacaccaagctctattgctttgatgaagtggctacgagcata 27682023
Query: 194 cagcctgtaattttcagcaaaactcttgtgctgcacaacaaaaccacggccagtagcacg 253
|||||| |||||||| ||||| | ||||||| ||||||||||||||||||||| || ||
Sbjct: 27682024 cagcctataattttctgcaaattttttgtgctccacaacaaaaccacggccagtggctcg 27682083
Query: 254 gtattttgcaccaccatgaaggattgtccggccatagtaatggctcttagttcccatgga 313
||||||||||| |||||||| |||||||| ||||| ||||| |||| |||||||| ||
Sbjct: 27682084 atattttgcacctccatgaagaattgtccgcccataataatgtgtcttcgttcccatcga 27682143
Query: 314 aaatgtgtagaacacagatgaaaaattcatttgcattgtgaagaaatcccagatagcagg 373
|| |||||||| ||||||| ||| | || ||||||| | | ||||||||| | ||||
Sbjct: 27682144 gaaggtgtagaaaacagatgcaaactgcaattgcatttttatgaaatcccaaactgcagt 27682203
Query: 374 taggaaaccttgttcaagagagttctctataatcattggcaatgcagtgaagaagccaag 433
||||| || |||||||| ||||| || || ||||| |||| ||||||||| | ||| ||
Sbjct: 27682204 gaggaacccatgttcaagtgagttttcaattatcatgggcagtgcagtgaaaatgcctag 27682263
Query: 434 ctgtatgatgaactgctgatta 455
||||||| ||||||||||||
Sbjct: 27682264 ttgtatgacaaactgctgatta 27682285
Score = 46.1 bits (23), Expect = 0.017
Identities = 47/55 (85%)
Strand = Plus / Plus
Query: 226 gcacaacaaaaccacggccagtagcacggtattttgcaccaccatgaaggattgt 280
|||||||||| || ||||| ||| | | |||||||||||||||||||| |||||
Sbjct: 19379755 gcacaacaaacccccggcctgtacctctatattttgcaccaccatgaagtattgt 19379809
>ref|NM_191270.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 5373
Score = 555 bits (280), Expect = e-156
Identities = 409/454 (90%)
Strand = Plus / Minus
Query: 1 acactgttttcaaccaatcaaaaccagacggattaaaagcaaatggagccataatccatg 60
|||||||||||||||||||||| ||||| ||||||||||||||||||||||| |||||||
Sbjct: 4681 acactgttttcaaccaatcaaagccagatggattaaaagcaaatggagccatgatccatg 4622
Query: 61 ataccaccagaaaccagctagatatatnnnnnnttatgtaaacaagtgtattcttggcaa 120
||||||| ||||||||||||||||| |||||||||||||||||| | | ||||
Sbjct: 4621 ataccactagaaaccagctagatatcatcatgattatgtaaacaagtgtatcccttgcaa 4562
Query: 121 taacactgtgtgcagcatacacagtcaatattattccaagctctattgcctttatgaagt 180
| |||||||| || |||||||||||||||| ||||||||| |||||||||||||||||||
Sbjct: 4561 tcacactgtgagctgcatacacagtcaatactattccaagttctattgcctttatgaagt 4502
Query: 181 ggcccctagcatacagcctgtaattttcagcaaaactcttgtgctgcacaacaaaaccac 240
||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 4501 ggctcctagcatacagcctgtaattttcagcaaaactcttatgctgcacaacaaaaccac 4442
Query: 241 ggccagtagcacggtattttgcaccaccatgaaggattgtccggccatagtaatggctct 300
||||||||||||| || || ||||| |||||||| ||||||||||||||||||||||| |
Sbjct: 4441 ggccagtagcacgatacttagcaccgccatgaagaattgtccggccatagtaatggcttt 4382
Query: 301 tagttcccatggaaaatgtgtagaacacagatgaaaaattcatttgcattgtgaagaaat 360
| || ||||||||||||||||||||||| || ||||| |||||||||| ||||| ||||
Sbjct: 4381 tcgtccccatggaaaatgtgtagaacacggacgaaaacatcatttgcatagtgaaaaaat 4322
Query: 361 cccagatagcaggtaggaaaccttgttcaagagagttctctataatcattggcaatgcag 420
|||||| |||||| || ||||| |||||||||||||||||||||||||||||||| ||||
Sbjct: 4321 cccagacagcaggcagaaaaccctgttcaagagagttctctataatcattggcaaggcag 4262
Query: 421 tgaagaagccaagctgtatgatgaactgctgatt 454
|||||| |||||||||||||| || ||||||||
Sbjct: 4261 tgaagaggccaagctgtatgacaaattgctgatt 4228
>ref|NT_079927.2| Oryza sativa (japonica cultivar-group)
Length = 14818989
Score = 555 bits (280), Expect = e-156
Identities = 409/454 (90%)
Strand = Plus / Plus
Query: 1 acactgttttcaaccaatcaaaaccagacggattaaaagcaaatggagccataatccatg 60
|||||||||||||||||||||| ||||| ||||||||||||||||||||||| |||||||
Sbjct: 6164769 acactgttttcaaccaatcaaagccagatggattaaaagcaaatggagccatgatccatg 6164828
Query: 61 ataccaccagaaaccagctagatatatnnnnnnttatgtaaacaagtgtattcttggcaa 120
||||||| ||||||||||||||||| |||||||||||||||||| | | ||||
Sbjct: 6164829 ataccactagaaaccagctagatatcatcatgattatgtaaacaagtgtatcccttgcaa 6164888
Query: 121 taacactgtgtgcagcatacacagtcaatattattccaagctctattgcctttatgaagt 180
| |||||||| || |||||||||||||||| ||||||||| |||||||||||||||||||
Sbjct: 6164889 tcacactgtgagctgcatacacagtcaatactattccaagttctattgcctttatgaagt 6164948
Query: 181 ggcccctagcatacagcctgtaattttcagcaaaactcttgtgctgcacaacaaaaccac 240
||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 6164949 ggctcctagcatacagcctgtaattttcagcaaaactcttatgctgcacaacaaaaccac 6165008
Query: 241 ggccagtagcacggtattttgcaccaccatgaaggattgtccggccatagtaatggctct 300
||||||||||||| || || ||||| |||||||| ||||||||||||||||||||||| |
Sbjct: 6165009 ggccagtagcacgatacttagcaccgccatgaagaattgtccggccatagtaatggcttt 6165068
Query: 301 tagttcccatggaaaatgtgtagaacacagatgaaaaattcatttgcattgtgaagaaat 360
| || ||||||||||||||||||||||| || ||||| |||||||||| ||||| ||||
Sbjct: 6165069 tcgtccccatggaaaatgtgtagaacacggacgaaaacatcatttgcatagtgaaaaaat 6165128
Query: 361 cccagatagcaggtaggaaaccttgttcaagagagttctctataatcattggcaatgcag 420
|||||| |||||| || ||||| |||||||||||||||||||||||||||||||| ||||
Sbjct: 6165129 cccagacagcaggcagaaaaccctgttcaagagagttctctataatcattggcaaggcag 6165188
Query: 421 tgaagaagccaagctgtatgatgaactgctgatt 454
|||||| |||||||||||||| || ||||||||
Sbjct: 6165189 tgaagaggccaagctgtatgacaaattgctgatt 6165222
Score = 194 bits (98), Expect = 3e-047
Identities = 266/322 (82%)
Strand = Plus / Plus
Query: 134 agcatacacagtcaatattattccaagctctattgcctttatgaagtggcccctagcata 193
|||||| | ||||||||| | |||||||||||||| || |||||||||| | ||||||
Sbjct: 2129347 agcataaagagtcaatatcacaccaagctctattgctttgatgaagtggctacgagcata 2129406
Query: 194 cagcctgtaattttcagcaaaactcttgtgctgcacaacaaaaccacggccagtagcacg 253
|||||| |||||||| ||||| | ||||||| ||||||||||||||||||||| || ||
Sbjct: 2129407 cagcctataattttctgcaaattttttgtgctccacaacaaaaccacggccagtggctcg 2129466
Query: 254 gtattttgcaccaccatgaaggattgtccggccatagtaatggctcttagttcccatgga 313
||||||||||| |||||||| |||||||| ||||| ||||| |||| |||||||| ||
Sbjct: 2129467 atattttgcacctccatgaagaattgtccgcccataataatgtgtcttcgttcccatcga 2129526
Query: 314 aaatgtgtagaacacagatgaaaaattcatttgcattgtgaagaaatcccagatagcagg 373
|| |||||||| ||||||| ||| | || ||||||| | | ||||||||| | ||||
Sbjct: 2129527 gaaggtgtagaaaacagatgcaaactgcaattgcatttttatgaaatcccaaactgcagt 2129586
Query: 374 taggaaaccttgttcaagagagttctctataatcattggcaatgcagtgaagaagccaag 433
||||| || |||||||| ||||| || || ||||| |||| ||||||||| | ||| ||
Sbjct: 2129587 gaggaacccatgttcaagtgagttttcaattatcatgggcagtgcagtgaaaatgcctag 2129646
Query: 434 ctgtatgatgaactgctgatta 455
||||||| ||||||||||||
Sbjct: 2129647 ttgtatgacaaactgctgatta 2129668
>dbj|AP003249.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
clone:P0435B05
Length = 150997
Score = 555 bits (280), Expect = e-156
Identities = 409/454 (90%)
Strand = Plus / Plus
Query: 1 acactgttttcaaccaatcaaaaccagacggattaaaagcaaatggagccataatccatg 60
|||||||||||||||||||||| ||||| ||||||||||||||||||||||| |||||||
Sbjct: 149739 acactgttttcaaccaatcaaagccagatggattaaaagcaaatggagccatgatccatg 149798
Query: 61 ataccaccagaaaccagctagatatatnnnnnnttatgtaaacaagtgtattcttggcaa 120
||||||| ||||||||||||||||| |||||||||||||||||| | | ||||
Sbjct: 149799 ataccactagaaaccagctagatatcatcatgattatgtaaacaagtgtatcccttgcaa 149858
Query: 121 taacactgtgtgcagcatacacagtcaatattattccaagctctattgcctttatgaagt 180
| |||||||| || |||||||||||||||| ||||||||| |||||||||||||||||||
Sbjct: 149859 tcacactgtgagctgcatacacagtcaatactattccaagttctattgcctttatgaagt 149918
Query: 181 ggcccctagcatacagcctgtaattttcagcaaaactcttgtgctgcacaacaaaaccac 240
||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 149919 ggctcctagcatacagcctgtaattttcagcaaaactcttatgctgcacaacaaaaccac 149978
Query: 241 ggccagtagcacggtattttgcaccaccatgaaggattgtccggccatagtaatggctct 300
||||||||||||| || || ||||| |||||||| ||||||||||||||||||||||| |
Sbjct: 149979 ggccagtagcacgatacttagcaccgccatgaagaattgtccggccatagtaatggcttt 150038
Query: 301 tagttcccatggaaaatgtgtagaacacagatgaaaaattcatttgcattgtgaagaaat 360
| || ||||||||||||||||||||||| || ||||| |||||||||| ||||| ||||
Sbjct: 150039 tcgtccccatggaaaatgtgtagaacacggacgaaaacatcatttgcatagtgaaaaaat 150098
Query: 361 cccagatagcaggtaggaaaccttgttcaagagagttctctataatcattggcaatgcag 420
|||||| |||||| || ||||| |||||||||||||||||||||||||||||||| ||||
Sbjct: 150099 cccagacagcaggcagaaaaccctgttcaagagagttctctataatcattggcaaggcag 150158
Query: 421 tgaagaagccaagctgtatgatgaactgctgatt 454
|||||| |||||||||||||| || ||||||||
Sbjct: 150159 tgaagaggccaagctgtatgacaaattgctgatt 150192
>dbj|AP003268.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
clone:P0503C12
Length = 147180
Score = 555 bits (280), Expect = e-156
Identities = 409/454 (90%)
Strand = Plus / Plus
Query: 1 acactgttttcaaccaatcaaaaccagacggattaaaagcaaatggagccataatccatg 60
|||||||||||||||||||||| ||||| ||||||||||||||||||||||| |||||||
Sbjct: 50448 acactgttttcaaccaatcaaagccagatggattaaaagcaaatggagccatgatccatg 50507
Query: 61 ataccaccagaaaccagctagatatatnnnnnnttatgtaaacaagtgtattcttggcaa 120
||||||| ||||||||||||||||| |||||||||||||||||| | | ||||
Sbjct: 50508 ataccactagaaaccagctagatatcatcatgattatgtaaacaagtgtatcccttgcaa 50567
Query: 121 taacactgtgtgcagcatacacagtcaatattattccaagctctattgcctttatgaagt 180
| |||||||| || |||||||||||||||| ||||||||| |||||||||||||||||||
Sbjct: 50568 tcacactgtgagctgcatacacagtcaatactattccaagttctattgcctttatgaagt 50627
Query: 181 ggcccctagcatacagcctgtaattttcagcaaaactcttgtgctgcacaacaaaaccac 240
||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 50628 ggctcctagcatacagcctgtaattttcagcaaaactcttatgctgcacaacaaaaccac 50687
Query: 241 ggccagtagcacggtattttgcaccaccatgaaggattgtccggccatagtaatggctct 300
||||||||||||| || || ||||| |||||||| ||||||||||||||||||||||| |
Sbjct: 50688 ggccagtagcacgatacttagcaccgccatgaagaattgtccggccatagtaatggcttt 50747
Query: 301 tagttcccatggaaaatgtgtagaacacagatgaaaaattcatttgcattgtgaagaaat 360
| || ||||||||||||||||||||||| || ||||| |||||||||| ||||| ||||
Sbjct: 50748 tcgtccccatggaaaatgtgtagaacacggacgaaaacatcatttgcatagtgaaaaaat 50807
Query: 361 cccagatagcaggtaggaaaccttgttcaagagagttctctataatcattggcaatgcag 420
|||||| |||||| || ||||| |||||||||||||||||||||||||||||||| ||||
Sbjct: 50808 cccagacagcaggcagaaaaccctgttcaagagagttctctataatcattggcaaggcag 50867
Query: 421 tgaagaagccaagctgtatgatgaactgctgatt 454
|||||| |||||||||||||| || ||||||||
Sbjct: 50868 tgaagaggccaagctgtatgacaaattgctgatt 50901
>gb|CH401168.1| Oryza sativa (japonica cultivar-group) chromosome 1 scaffold000005 genomic
scaffold, whole genome shotgun sequence
Length = 17394610
Score = 555 bits (280), Expect = e-156
Identities = 409/454 (90%)
Strand = Plus / Plus
Query: 1 acactgttttcaaccaatcaaaaccagacggattaaaagcaaatggagccataatccatg 60
|||||||||||||||||||||| ||||| ||||||||||||||||||||||| |||||||
Sbjct: 6067412 acactgttttcaaccaatcaaagccagatggattaaaagcaaatggagccatgatccatg 6067471
Query: 61 ataccaccagaaaccagctagatatatnnnnnnttatgtaaacaagtgtattcttggcaa 120
||||||| ||||||||||||||||| |||||||||||||||||| | | ||||
Sbjct: 6067472 ataccactagaaaccagctagatatcatcatgattatgtaaacaagtgtatcccttgcaa 6067531
Query: 121 taacactgtgtgcagcatacacagtcaatattattccaagctctattgcctttatgaagt 180
| |||||||| || |||||||||||||||| ||||||||| |||||||||||||||||||
Sbjct: 6067532 tcacactgtgagctgcatacacagtcaatactattccaagttctattgcctttatgaagt 6067591
Query: 181 ggcccctagcatacagcctgtaattttcagcaaaactcttgtgctgcacaacaaaaccac 240
||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 6067592 ggctcctagcatacagcctgtaattttcagcaaaactcttatgctgcacaacaaaaccac 6067651
Query: 241 ggccagtagcacggtattttgcaccaccatgaaggattgtccggccatagtaatggctct 300
||||||||||||| || || ||||| |||||||| ||||||||||||||||||||||| |
Sbjct: 6067652 ggccagtagcacgatacttagcaccgccatgaagaattgtccggccatagtaatggcttt 6067711
Query: 301 tagttcccatggaaaatgtgtagaacacagatgaaaaattcatttgcattgtgaagaaat 360
| || ||||||||||||||||||||||| || ||||| |||||||||| ||||| ||||
Sbjct: 6067712 tcgtccccatggaaaatgtgtagaacacggacgaaaacatcatttgcatagtgaaaaaat 6067771
Query: 361 cccagatagcaggtaggaaaccttgttcaagagagttctctataatcattggcaatgcag 420
|||||| |||||| || ||||| |||||||||||||||||||||||||||||||| ||||
Sbjct: 6067772 cccagacagcaggcagaaaaccctgttcaagagagttctctataatcattggcaaggcag 6067831
Query: 421 tgaagaagccaagctgtatgatgaactgctgatt 454
|||||| |||||||||||||| || ||||||||
Sbjct: 6067832 tgaagaggccaagctgtatgacaaattgctgatt 6067865
Score = 194 bits (98), Expect = 3e-047
Identities = 266/322 (82%)
Strand = Plus / Plus
Query: 134 agcatacacagtcaatattattccaagctctattgcctttatgaagtggcccctagcata 193
|||||| | ||||||||| | |||||||||||||| || |||||||||| | ||||||
Sbjct: 2069798 agcataaagagtcaatatcacaccaagctctattgctttgatgaagtggctacgagcata 2069857
Query: 194 cagcctgtaattttcagcaaaactcttgtgctgcacaacaaaaccacggccagtagcacg 253
|||||| |||||||| ||||| | ||||||| ||||||||||||||||||||| || ||
Sbjct: 2069858 cagcctataattttctgcaaattttttgtgctccacaacaaaaccacggccagtggctcg 2069917
Query: 254 gtattttgcaccaccatgaaggattgtccggccatagtaatggctcttagttcccatgga 313
||||||||||| |||||||| |||||||| ||||| ||||| |||| |||||||| ||
Sbjct: 2069918 atattttgcacctccatgaagaattgtccgcccataataatgtgtcttcgttcccatcga 2069977
Query: 314 aaatgtgtagaacacagatgaaaaattcatttgcattgtgaagaaatcccagatagcagg 373
|| |||||||| ||||||| ||| | || ||||||| | | ||||||||| | ||||
Sbjct: 2069978 gaaggtgtagaaaacagatgcaaactgcaattgcatttttatgaaatcccaaactgcagt 2070037
Query: 374 taggaaaccttgttcaagagagttctctataatcattggcaatgcagtgaagaagccaag 433
||||| || |||||||| ||||| || || ||||| |||| ||||||||| | ||| ||
Sbjct: 2070038 gaggaacccatgttcaagtgagttttcaattatcatgggcagtgcagtgaaaatgcctag 2070097
Query: 434 ctgtatgatgaactgctgatta 455
||||||| ||||||||||||
Sbjct: 2070098 ttgtatgacaaactgctgatta 2070119
>gb|CM000138.1| Oryza sativa (japonica cultivar-group) chromosome 1, whole genome shotgun
sequence
Length = 42596331
Score = 555 bits (280), Expect = e-156
Identities = 409/454 (90%)
Strand = Plus / Plus
Query: 1 acactgttttcaaccaatcaaaaccagacggattaaaagcaaatggagccataatccatg 60
|||||||||||||||||||||| ||||| ||||||||||||||||||||||| |||||||
Sbjct: 31269133 acactgttttcaaccaatcaaagccagatggattaaaagcaaatggagccatgatccatg 31269192
Query: 61 ataccaccagaaaccagctagatatatnnnnnnttatgtaaacaagtgtattcttggcaa 120
||||||| ||||||||||||||||| |||||||||||||||||| | | ||||
Sbjct: 31269193 ataccactagaaaccagctagatatcatcatgattatgtaaacaagtgtatcccttgcaa 31269252
Query: 121 taacactgtgtgcagcatacacagtcaatattattccaagctctattgcctttatgaagt 180
| |||||||| || |||||||||||||||| ||||||||| |||||||||||||||||||
Sbjct: 31269253 tcacactgtgagctgcatacacagtcaatactattccaagttctattgcctttatgaagt 31269312
Query: 181 ggcccctagcatacagcctgtaattttcagcaaaactcttgtgctgcacaacaaaaccac 240
||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 31269313 ggctcctagcatacagcctgtaattttcagcaaaactcttatgctgcacaacaaaaccac 31269372
Query: 241 ggccagtagcacggtattttgcaccaccatgaaggattgtccggccatagtaatggctct 300
||||||||||||| || || ||||| |||||||| ||||||||||||||||||||||| |
Sbjct: 31269373 ggccagtagcacgatacttagcaccgccatgaagaattgtccggccatagtaatggcttt 31269432
Query: 301 tagttcccatggaaaatgtgtagaacacagatgaaaaattcatttgcattgtgaagaaat 360
| || ||||||||||||||||||||||| || ||||| |||||||||| ||||| ||||
Sbjct: 31269433 tcgtccccatggaaaatgtgtagaacacggacgaaaacatcatttgcatagtgaaaaaat 31269492
Query: 361 cccagatagcaggtaggaaaccttgttcaagagagttctctataatcattggcaatgcag 420
|||||| |||||| || ||||| |||||||||||||||||||||||||||||||| ||||
Sbjct: 31269493 cccagacagcaggcagaaaaccctgttcaagagagttctctataatcattggcaaggcag 31269552
Query: 421 tgaagaagccaagctgtatgatgaactgctgatt 454
|||||| |||||||||||||| || ||||||||
Sbjct: 31269553 tgaagaggccaagctgtatgacaaattgctgatt 31269586
Score = 194 bits (98), Expect = 3e-047
Identities = 266/322 (82%)
Strand = Plus / Plus
Query: 134 agcatacacagtcaatattattccaagctctattgcctttatgaagtggcccctagcata 193
|||||| | ||||||||| | |||||||||||||| || |||||||||| | ||||||
Sbjct: 27271519 agcataaagagtcaatatcacaccaagctctattgctttgatgaagtggctacgagcata 27271578
Query: 194 cagcctgtaattttcagcaaaactcttgtgctgcacaacaaaaccacggccagtagcacg 253
|||||| |||||||| ||||| | ||||||| ||||||||||||||||||||| || ||
Sbjct: 27271579 cagcctataattttctgcaaattttttgtgctccacaacaaaaccacggccagtggctcg 27271638
Query: 254 gtattttgcaccaccatgaaggattgtccggccatagtaatggctcttagttcccatgga 313
||||||||||| |||||||| |||||||| ||||| ||||| |||| |||||||| ||
Sbjct: 27271639 atattttgcacctccatgaagaattgtccgcccataataatgtgtcttcgttcccatcga 27271698
Query: 314 aaatgtgtagaacacagatgaaaaattcatttgcattgtgaagaaatcccagatagcagg 373
|| |||||||| ||||||| ||| | || ||||||| | | ||||||||| | ||||
Sbjct: 27271699 gaaggtgtagaaaacagatgcaaactgcaattgcatttttatgaaatcccaaactgcagt 27271758
Query: 374 taggaaaccttgttcaagagagttctctataatcattggcaatgcagtgaagaagccaag 433
||||| || |||||||| ||||| || || ||||| |||| ||||||||| | ||| ||
Sbjct: 27271759 gaggaacccatgttcaagtgagttttcaattatcatgggcagtgcagtgaaaatgcctag 27271818
Query: 434 ctgtatgatgaactgctgatta 455
||||||| ||||||||||||
Sbjct: 27271819 ttgtatgacaaactgctgatta 27271840
Score = 46.1 bits (23), Expect = 0.017
Identities = 47/55 (85%)
Strand = Plus / Plus
Query: 226 gcacaacaaaaccacggccagtagcacggtattttgcaccaccatgaaggattgt 280
|||||||||| || ||||| ||| | | |||||||||||||||||||| |||||
Sbjct: 19056541 gcacaacaaacccccggcctgtacctctatattttgcaccaccatgaagtattgt 19056595
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43261740
Score = 555 bits (280), Expect = e-156
Identities = 409/454 (90%)
Strand = Plus / Plus
Query: 1 acactgttttcaaccaatcaaaaccagacggattaaaagcaaatggagccataatccatg 60
|||||||||||||||||||||| ||||| ||||||||||||||||||||||| |||||||
Sbjct: 31636716 acactgttttcaaccaatcaaagccagatggattaaaagcaaatggagccatgatccatg 31636775
Query: 61 ataccaccagaaaccagctagatatatnnnnnnttatgtaaacaagtgtattcttggcaa 120
||||||| ||||||||||||||||| |||||||||||||||||| | | ||||
Sbjct: 31636776 ataccactagaaaccagctagatatcatcatgattatgtaaacaagtgtatcccttgcaa 31636835
Query: 121 taacactgtgtgcagcatacacagtcaatattattccaagctctattgcctttatgaagt 180
| |||||||| || |||||||||||||||| ||||||||| |||||||||||||||||||
Sbjct: 31636836 tcacactgtgagctgcatacacagtcaatactattccaagttctattgcctttatgaagt 31636895
Query: 181 ggcccctagcatacagcctgtaattttcagcaaaactcttgtgctgcacaacaaaaccac 240
||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 31636896 ggctcctagcatacagcctgtaattttcagcaaaactcttatgctgcacaacaaaaccac 31636955
Query: 241 ggccagtagcacggtattttgcaccaccatgaaggattgtccggccatagtaatggctct 300
||||||||||||| || || ||||| |||||||| ||||||||||||||||||||||| |
Sbjct: 31636956 ggccagtagcacgatacttagcaccgccatgaagaattgtccggccatagtaatggcttt 31637015
Query: 301 tagttcccatggaaaatgtgtagaacacagatgaaaaattcatttgcattgtgaagaaat 360
| || ||||||||||||||||||||||| || ||||| |||||||||| ||||| ||||
Sbjct: 31637016 tcgtccccatggaaaatgtgtagaacacggacgaaaacatcatttgcatagtgaaaaaat 31637075
Query: 361 cccagatagcaggtaggaaaccttgttcaagagagttctctataatcattggcaatgcag 420
|||||| |||||| || ||||| |||||||||||||||||||||||||||||||| ||||
Sbjct: 31637076 cccagacagcaggcagaaaaccctgttcaagagagttctctataatcattggcaaggcag 31637135
Query: 421 tgaagaagccaagctgtatgatgaactgctgatt 454
|||||| |||||||||||||| || ||||||||
Sbjct: 31637136 tgaagaggccaagctgtatgacaaattgctgatt 31637169
Score = 194 bits (98), Expect = 3e-047
Identities = 266/322 (82%)
Strand = Plus / Plus
Query: 134 agcatacacagtcaatattattccaagctctattgcctttatgaagtggcccctagcata 193
|||||| | ||||||||| | |||||||||||||| || |||||||||| | ||||||
Sbjct: 27601294 agcataaagagtcaatatcacaccaagctctattgctttgatgaagtggctacgagcata 27601353
Query: 194 cagcctgtaattttcagcaaaactcttgtgctgcacaacaaaaccacggccagtagcacg 253
|||||| |||||||| ||||| | ||||||| ||||||||||||||||||||| || ||
Sbjct: 27601354 cagcctataattttctgcaaattttttgtgctccacaacaaaaccacggccagtggctcg 27601413
Query: 254 gtattttgcaccaccatgaaggattgtccggccatagtaatggctcttagttcccatgga 313
||||||||||| |||||||| |||||||| ||||| ||||| |||| |||||||| ||
Sbjct: 27601414 atattttgcacctccatgaagaattgtccgcccataataatgtgtcttcgttcccatcga 27601473
Query: 314 aaatgtgtagaacacagatgaaaaattcatttgcattgtgaagaaatcccagatagcagg 373
|| |||||||| ||||||| ||| | || ||||||| | | ||||||||| | ||||
Sbjct: 27601474 gaaggtgtagaaaacagatgcaaactgcaattgcatttttatgaaatcccaaactgcagt 27601533
Query: 374 taggaaaccttgttcaagagagttctctataatcattggcaatgcagtgaagaagccaag 433
||||| || |||||||| ||||| || || ||||| |||| ||||||||| | ||| ||
Sbjct: 27601534 gaggaacccatgttcaagtgagttttcaattatcatgggcagtgcagtgaaaatgcctag 27601593
Query: 434 ctgtatgatgaactgctgatta 455
||||||| ||||||||||||
Sbjct: 27601594 ttgtatgacaaactgctgatta 27601615
Score = 46.1 bits (23), Expect = 0.017
Identities = 47/55 (85%)
Strand = Plus / Plus
Query: 226 gcacaacaaaaccacggccagtagcacggtattttgcaccaccatgaaggattgt 280
|||||||||| || ||||| ||| | | |||||||||||||||||||| |||||
Sbjct: 19301038 gcacaacaaacccccggcctgtacctctatattttgcaccaccatgaagtattgt 19301092
>dbj|AK099834.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013106H04, full
insert sequence
Length = 1501
Score = 541 bits (273), Expect = e-151
Identities = 409/455 (89%), Gaps = 1/455 (0%)
Strand = Plus / Minus
Query: 1 acactgttttcaaccaatcaaaaccagacggattaaaagcaaatggagccataatccatg 60
|||||||||||||||||||||| ||||| ||||||||||||||||||||||| |||||||
Sbjct: 513 acactgttttcaaccaatcaaagccagatggattaaaagcaaatggagccatgatccatg 454
Query: 61 ataccaccagaaaccagctagatatatnnnnnnttatgtaaacaagtgtattcttggcaa 120
||||||| ||||||||||||||||| |||||||||||||||||| | | ||||
Sbjct: 453 ataccactagaaaccagctagatatcatcatgattatgtaaacaagtgtatcccttgcaa 394
Query: 121 taacactgtgtgcagcatacacagtcaatattattccaagctctattgcctttatgaagt 180
| |||||||| || |||||||||||||||| ||||||||| |||||||||||||||||||
Sbjct: 393 tcacactgtgagctgcatacacagtcaatactattccaagttctattgcctttatgaagt 334
Query: 181 ggcccctagcatacagcctgtaattttcagcaaaactcttgtgctgcacaacaaaaccac 240
||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 333 ggctcctagcatacagcctgtaattttcagcaaaactcttatgctgcacaacaaaaccac 274
Query: 241 ggccagtagcacggtattttgcaccaccatgaaggattgtccggccatagtaatggctct 300
||||||||||||| || || ||||| |||||||| ||||||||||||||||||||||| |
Sbjct: 273 ggccagtagcacgatacttagcaccgccatgaagaattgtccggccatagtaatggcttt 214
Query: 301 tagttcccatggaaaatgtgtagaacacagatgaaaaattcatttgcattgtg-aagaaa 359
| || ||||||||||||||||||||||| || ||||| |||||||||| ||| || |||
Sbjct: 213 tcgtccccatggaaaatgtgtagaacacggacgaaaacatcatttgcatagtgaaaaaaa 154
Query: 360 tcccagatagcaggtaggaaaccttgttcaagagagttctctataatcattggcaatgca 419
||||||| |||||| || ||||| |||||||||||||||||||||||||||||||| |||
Sbjct: 153 tcccagacagcaggcagaaaaccctgttcaagagagttctctataatcattggcaaggca 94
Query: 420 gtgaagaagccaagctgtatgatgaactgctgatt 454
||||||| |||||||||||||| || ||||||||
Sbjct: 93 gtgaagaggccaagctgtatgacaaattgctgatt 59
>dbj|AK060407.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-010-D06, full
insert sequence
Length = 1749
Score = 194 bits (98), Expect = 3e-047
Identities = 266/322 (82%)
Strand = Plus / Minus
Query: 134 agcatacacagtcaatattattccaagctctattgcctttatgaagtggcccctagcata 193
|||||| | ||||||||| | |||||||||||||| || |||||||||| | ||||||
Sbjct: 604 agcataaagagtcaatatcacaccaagctctattgctttgatgaagtggctacgagcata 545
Query: 194 cagcctgtaattttcagcaaaactcttgtgctgcacaacaaaaccacggccagtagcacg 253
|||||| |||||||| ||||| | ||||||| ||||||||||||||||||||| || ||
Sbjct: 544 cagcctataattttctgcaaattttttgtgctccacaacaaaaccacggccagtggctcg 485
Query: 254 gtattttgcaccaccatgaaggattgtccggccatagtaatggctcttagttcccatgga 313
||||||||||| |||||||| |||||||| ||||| ||||| |||| |||||||| ||
Sbjct: 484 atattttgcacctccatgaagaattgtccgcccataataatgtgtcttcgttcccatcga 425
Query: 314 aaatgtgtagaacacagatgaaaaattcatttgcattgtgaagaaatcccagatagcagg 373
|| |||||||| ||||||| ||| | || ||||||| | | ||||||||| | ||||
Sbjct: 424 gaaggtgtagaaaacagatgcaaactgcaattgcatttttatgaaatcccaaactgcagt 365
Query: 374 taggaaaccttgttcaagagagttctctataatcattggcaatgcagtgaagaagccaag 433
||||| || |||||||| ||||| || || ||||| |||| ||||||||| | ||| ||
Sbjct: 364 gaggaacccatgttcaagtgagttttcaattatcatgggcagtgcagtgaaaatgcctag 305
Query: 434 ctgtatgatgaactgctgatta 455
||||||| ||||||||||||
Sbjct: 304 ttgtatgacaaactgctgatta 283
>gb|AACV01002091.1| Oryza sativa (japonica cultivar-group) chromosome 1 Ctg002091, whole
genome shotgun sequence
Length = 57249
Score = 194 bits (98), Expect = 3e-047
Identities = 266/322 (82%)
Strand = Plus / Minus
Query: 134 agcatacacagtcaatattattccaagctctattgcctttatgaagtggcccctagcata 193
|||||| | ||||||||| | |||||||||||||| || |||||||||| | ||||||
Sbjct: 41945 agcataaagagtcaatatcacaccaagctctattgctttgatgaagtggctacgagcata 41886
Query: 194 cagcctgtaattttcagcaaaactcttgtgctgcacaacaaaaccacggccagtagcacg 253
|||||| |||||||| ||||| | ||||||| ||||||||||||||||||||| || ||
Sbjct: 41885 cagcctataattttctgcaaattttttgtgctccacaacaaaaccacggccagtggctcg 41826
Query: 254 gtattttgcaccaccatgaaggattgtccggccatagtaatggctcttagttcccatgga 313
||||||||||| |||||||| |||||||| ||||| ||||| |||| |||||||| ||
Sbjct: 41825 atattttgcacctccatgaagaattgtccgcccataataatgtgtcttcgttcccatcga 41766
Query: 314 aaatgtgtagaacacagatgaaaaattcatttgcattgtgaagaaatcccagatagcagg 373
|| |||||||| ||||||| ||| | || ||||||| | | ||||||||| | ||||
Sbjct: 41765 gaaggtgtagaaaacagatgcaaactgcaattgcatttttatgaaatcccaaactgcagt 41706
Query: 374 taggaaaccttgttcaagagagttctctataatcattggcaatgcagtgaagaagccaag 433
||||| || |||||||| ||||| || || ||||| |||| ||||||||| | ||| ||
Sbjct: 41705 gaggaacccatgttcaagtgagttttcaattatcatgggcagtgcagtgaaaatgcctag 41646
Query: 434 ctgtatgatgaactgctgatta 455
||||||| ||||||||||||
Sbjct: 41645 ttgtatgacaaactgctgatta 41624
>ref|NM_191973.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 5310
Score = 194 bits (98), Expect = 3e-047
Identities = 266/322 (82%)
Strand = Plus / Minus
Query: 134 agcatacacagtcaatattattccaagctctattgcctttatgaagtggcccctagcata 193
|||||| | ||||||||| | |||||||||||||| || |||||||||| | ||||||
Sbjct: 4482 agcataaagagtcaatatcacaccaagctctattgctttgatgaagtggctacgagcata 4423
Query: 194 cagcctgtaattttcagcaaaactcttgtgctgcacaacaaaaccacggccagtagcacg 253
|||||| |||||||| ||||| | ||||||| ||||||||||||||||||||| || ||
Sbjct: 4422 cagcctataattttctgcaaattttttgtgctccacaacaaaaccacggccagtggctcg 4363
Query: 254 gtattttgcaccaccatgaaggattgtccggccatagtaatggctcttagttcccatgga 313
||||||||||| |||||||| |||||||| ||||| ||||| |||| |||||||| ||
Sbjct: 4362 atattttgcacctccatgaagaattgtccgcccataataatgtgtcttcgttcccatcga 4303
Query: 314 aaatgtgtagaacacagatgaaaaattcatttgcattgtgaagaaatcccagatagcagg 373
|| |||||||| ||||||| ||| | || ||||||| | | ||||||||| | ||||
Sbjct: 4302 gaaggtgtagaaaacagatgcaaactgcaattgcatttttatgaaatcccaaactgcagt 4243
Query: 374 taggaaaccttgttcaagagagttctctataatcattggcaatgcagtgaagaagccaag 433
||||| || |||||||| ||||| || || ||||| |||| ||||||||| | ||| ||
Sbjct: 4242 gaggaacccatgttcaagtgagttttcaattatcatgggcagtgcagtgaaaatgcctag 4183
Query: 434 ctgtatgatgaactgctgatta 455
||||||| ||||||||||||
Sbjct: 4182 ttgtatgacaaactgctgatta 4161
>dbj|AP003223.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
clone:P0007F06
Length = 150817
Score = 194 bits (98), Expect = 3e-047
Identities = 266/322 (82%)
Strand = Plus / Plus
Query: 134 agcatacacagtcaatattattccaagctctattgcctttatgaagtggcccctagcata 193
|||||| | ||||||||| | |||||||||||||| || |||||||||| | ||||||
Sbjct: 68588 agcataaagagtcaatatcacaccaagctctattgctttgatgaagtggctacgagcata 68647
Query: 194 cagcctgtaattttcagcaaaactcttgtgctgcacaacaaaaccacggccagtagcacg 253
|||||| |||||||| ||||| | ||||||| ||||||||||||||||||||| || ||
Sbjct: 68648 cagcctataattttctgcaaattttttgtgctccacaacaaaaccacggccagtggctcg 68707
Query: 254 gtattttgcaccaccatgaaggattgtccggccatagtaatggctcttagttcccatgga 313
||||||||||| |||||||| |||||||| ||||| ||||| |||| |||||||| ||
Sbjct: 68708 atattttgcacctccatgaagaattgtccgcccataataatgtgtcttcgttcccatcga 68767
Query: 314 aaatgtgtagaacacagatgaaaaattcatttgcattgtgaagaaatcccagatagcagg 373
|| |||||||| ||||||| ||| | || ||||||| | | ||||||||| | ||||
Sbjct: 68768 gaaggtgtagaaaacagatgcaaactgcaattgcatttttatgaaatcccaaactgcagt 68827
Query: 374 taggaaaccttgttcaagagagttctctataatcattggcaatgcagtgaagaagccaag 433
||||| || |||||||| ||||| || || ||||| |||| ||||||||| | ||| ||
Sbjct: 68828 gaggaacccatgttcaagtgagttttcaattatcatgggcagtgcagtgaaaatgcctag 68887
Query: 434 ctgtatgatgaactgctgatta 455
||||||| ||||||||||||
Sbjct: 68888 ttgtatgacaaactgctgatta 68909
>dbj|AP003264.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
clone:P0485G01
Length = 167203
Score = 194 bits (98), Expect = 3e-047
Identities = 266/322 (82%)
Strand = Plus / Plus
Query: 134 agcatacacagtcaatattattccaagctctattgcctttatgaagtggcccctagcata 193
|||||| | ||||||||| | |||||||||||||| || |||||||||| | ||||||
Sbjct: 9860 agcataaagagtcaatatcacaccaagctctattgctttgatgaagtggctacgagcata 9919
Query: 194 cagcctgtaattttcagcaaaactcttgtgctgcacaacaaaaccacggccagtagcacg 253
|||||| |||||||| ||||| | ||||||| ||||||||||||||||||||| || ||
Sbjct: 9920 cagcctataattttctgcaaattttttgtgctccacaacaaaaccacggccagtggctcg 9979
Query: 254 gtattttgcaccaccatgaaggattgtccggccatagtaatggctcttagttcccatgga 313
||||||||||| |||||||| |||||||| ||||| ||||| |||| |||||||| ||
Sbjct: 9980 atattttgcacctccatgaagaattgtccgcccataataatgtgtcttcgttcccatcga 10039
Query: 314 aaatgtgtagaacacagatgaaaaattcatttgcattgtgaagaaatcccagatagcagg 373
|| |||||||| ||||||| ||| | || ||||||| | | ||||||||| | ||||
Sbjct: 10040 gaaggtgtagaaaacagatgcaaactgcaattgcatttttatgaaatcccaaactgcagt 10099
Query: 374 taggaaaccttgttcaagagagttctctataatcattggcaatgcagtgaagaagccaag 433
||||| || |||||||| ||||| || || ||||| |||| ||||||||| | ||| ||
Sbjct: 10100 gaggaacccatgttcaagtgagttttcaattatcatgggcagtgcagtgaaaatgcctag 10159
Query: 434 ctgtatgatgaactgctgatta 455
||||||| ||||||||||||
Sbjct: 10160 ttgtatgacaaactgctgatta 10181
>gb|CB662461.1|CB662461 OSJNEd06I07.f OSJNEd Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEd06I07 5', mRNA sequence
Length = 718
Score = 69.9 bits (35), Expect = 1e-009
Identities = 83/99 (83%)
Strand = Plus / Minus
Query: 134 agcatacacagtcaatattattccaagctctattgcctttatgaagtggcccctagcata 193
|||||| | ||||||||| | |||||||||||||| || |||||||||| | ||||||
Sbjct: 99 agcataaagagtcaatatcacaccaagctctattgctttgatgaagtggctacgagcata 40
Query: 194 cagcctgtaattttcagcaaaactcttgtgctgcacaac 232
|||||| |||||||| ||||| | ||||||| ||||||
Sbjct: 39 cagcctataattttctgcaaattttttgtgctccacaac 1
>gb|CB662404.1|CB662404 OSJNEd06G07.f OSJNEd Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEd06G07 5', mRNA sequence
Length = 726
Score = 61.9 bits (31), Expect = 3e-007
Identities = 82/99 (82%)
Strand = Plus / Minus
Query: 134 agcatacacagtcaatattattccaagctctattgcctttatgaagtggcccctagcata 193
|||||| | ||||||||| | ||||||| |||||| || |||||||||| | ||||||
Sbjct: 99 agcataaagagtcaatatcacaccaagctgtattgctttgatgaagtggctacgagcata 40
Query: 194 cagcctgtaattttcagcaaaactcttgtgctgcacaac 232
|||||| |||||||| ||||| | ||||||| ||||||
Sbjct: 39 cagcctataattttctgcaaattttttgtgctccacaac 1
>dbj|AK059569.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-029-H12, full
insert sequence
Length = 1235
Score = 50.1 bits (25), Expect = 0.001
Identities = 46/53 (86%)
Strand = Plus / Minus
Query: 228 acaacaaaaccacggccagtagcacggtattttgcaccaccatgaaggattgt 280
||||||||||| | ||||||||| | || ||||||||||||||||| |||||
Sbjct: 71 acaacaaaacctctaccagtagcatgatactttgcaccaccatgaagtattgt 19
>dbj|AK071856.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023122H24, full
insert sequence
Length = 1399
Score = 50.1 bits (25), Expect = 0.001
Identities = 46/53 (86%)
Strand = Plus / Minus
Query: 228 acaacaaaaccacggccagtagcacggtattttgcaccaccatgaaggattgt 280
||||||||||| | ||||||||| | || ||||||||||||||||| |||||
Sbjct: 256 acaacaaaacctctaccagtagcatgatactttgcaccaccatgaagtattgt 204
>ref|XM_550490.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 5316
Score = 50.1 bits (25), Expect = 0.001
Identities = 46/53 (86%)
Strand = Plus / Minus
Query: 228 acaacaaaaccacggccagtagcacggtattttgcaccaccatgaaggattgt 280
||||||||||| | ||||||||| | || ||||||||||||||||| |||||
Sbjct: 4403 acaacaaaacctctaccagtagcatgatactttgcaccaccatgaagtattgt 4351
>dbj|BA000029.3| Oryza sativa (japonica cultivar-group) mitochondrial DNA, complete genome
Length = 490520
Score = 48.1 bits (24), Expect = 0.004
Identities = 51/60 (85%)
Strand = Plus / Plus
Query: 228 acaacaaaaccacggccagtagcacggtattttgcaccaccatgaaggattgtccggcca 287
||||||||||| | |||||| || | ||||||||||||||||| || ||||| ||||||
Sbjct: 300141 acaacaaaacctctgccagttgctctatattttgcaccaccatggagaattgtgcggcca 300200
>dbj|AK064446.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-110-F01, full
insert sequence
Length = 1923
Score = 46.1 bits (23), Expect = 0.017
Identities = 47/55 (85%)
Strand = Plus / Minus
Query: 226 gcacaacaaaaccacggccagtagcacggtattttgcaccaccatgaaggattgt 280
|||||||||| || ||||| ||| | | |||||||||||||||||||| |||||
Sbjct: 662 gcacaacaaacccccggcctgtacctctatattttgcaccaccatgaagtattgt 608
>gb|AACV01001413.1| Oryza sativa (japonica cultivar-group) chromosome 1 Ctg001413, whole
genome shotgun sequence
Length = 32302
Score = 46.1 bits (23), Expect = 0.017
Identities = 47/55 (85%)
Strand = Plus / Plus
Query: 226 gcacaacaaaaccacggccagtagcacggtattttgcaccaccatgaaggattgt 280
|||||||||| || ||||| ||| | | |||||||||||||||||||| |||||
Sbjct: 8003 gcacaacaaacccccggcctgtacctctatattttgcaccaccatgaagtattgt 8057
>ref|NM_193211.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 5634
Score = 46.1 bits (23), Expect = 0.017
Identities = 47/55 (85%)
Strand = Plus / Minus
Query: 226 gcacaacaaaaccacggccagtagcacggtattttgcaccaccatgaaggattgt 280
|||||||||| || ||||| ||| | | |||||||||||||||||||| |||||
Sbjct: 4711 gcacaacaaacccccggcctgtacctctatattttgcaccaccatgaagtattgt 4657
>ref|NT_079926.2| Oryza sativa (japonica cultivar-group)
Length = 8469246
Score = 46.1 bits (23), Expect = 0.017
Identities = 47/55 (85%)
Strand = Plus / Plus
Query: 226 gcacaacaaaaccacggccagtagcacggtattttgcaccaccatgaaggattgt 280
|||||||||| || ||||| ||| | | |||||||||||||||||||| |||||
Sbjct: 2297987 gcacaacaaacccccggcctgtacctctatattttgcaccaccatgaagtattgt 2298041
>dbj|AP003447.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
clone:OJ1619_F12
Length = 133028
Score = 46.1 bits (23), Expect = 0.017
Identities = 47/55 (85%)
Strand = Plus / Plus
Query: 226 gcacaacaaaaccacggccagtagcacggtattttgcaccaccatgaaggattgt 280
|||||||||| || ||||| ||| | | |||||||||||||||||||| |||||
Sbjct: 120659 gcacaacaaacccccggcctgtacctctatattttgcaccaccatgaagtattgt 120713
>dbj|AP003445.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
clone:OJ1029_F04
Length = 141834
Score = 46.1 bits (23), Expect = 0.017
Identities = 47/55 (85%)
Strand = Plus / Plus
Query: 226 gcacaacaaaaccacggccagtagcacggtattttgcaccaccatgaaggattgt 280
|||||||||| || ||||| ||| | | |||||||||||||||||||| |||||
Sbjct: 29043 gcacaacaaacccccggcctgtacctctatattttgcaccaccatgaagtattgt 29097
>gb|CH401166.1| Oryza sativa (japonica cultivar-group) chromosome 1 scaffold000003 genomic
scaffold, whole genome shotgun sequence
Length = 8539496
Score = 46.1 bits (23), Expect = 0.017
Identities = 47/55 (85%)
Strand = Plus / Plus
Query: 226 gcacaacaaaaccacggccagtagcacggtattttgcaccaccatgaaggattgt 280
|||||||||| || ||||| ||| | | |||||||||||||||||||| |||||
Sbjct: 2431418 gcacaacaaacccccggcctgtacctctatattttgcaccaccatgaagtattgt 2431472
>gb|CB684140.1|CB684140 OSJNEf13F24.f OSJNEf Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEf13F24 5', mRNA sequence
Length = 710
Score = 44.1 bits (22), Expect = 0.068
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 243 ccagtagcacggtattttgcaccaccatgaaggattgt 280
||||||||| | || ||||||||||||||||| |||||
Sbjct: 485 ccagtagcatgatactttgcaccaccatgaagtattgt 448
>dbj|AG209222.1| Oryza sativa (japonica cultivar-group) DNA, clone:NE5045_0_101_1A,
3' flanking sequence of Tos17 insertion in rice strain
NE5045, genomic survey sequence
Length = 660
Score = 42.1 bits (21), Expect = 0.27
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 255 tattttgcaccaccatgaaggattgtccggccatagtaatg 295
||||| ||||||||||| || ||||| |||||| |||||||
Sbjct: 171 tatttggcaccaccatgcagaattgtgcggccaaagtaatg 211
>dbj|AG209650.1| Oryza sativa (japonica cultivar-group) DNA, clone:NE7049_0_702_1A,
3' flanking sequence of Tos17 insertion in rice strain
NE7049, genomic survey sequence
Length = 613
Score = 42.1 bits (21), Expect = 0.27
Identities = 36/41 (87%)
Strand = Plus / Minus
Query: 255 tattttgcaccaccatgaaggattgtccggccatagtaatg 295
||||| ||||||||||| || ||||| |||||| |||||||
Sbjct: 275 tatttggcaccaccatgcagaattgtgcggccaaagtaatg 235
>dbj|AG211728.1| Oryza sativa (japonica cultivar-group) DNA, clone:NF5036_0_402_1A,
3' flanking sequence of Tos17 insertion in rice strain
NF5036, genomic survey sequence
Length = 550
Score = 42.1 bits (21), Expect = 0.27
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 255 tattttgcaccaccatgaaggattgtccggccatagtaatg 295
||||| ||||||||||| || ||||| |||||| |||||||
Sbjct: 193 tatttggcaccaccatgcagaattgtgcggccaaagtaatg 233
>dbj|AP003454.1| Oryza sativa (japonica cultivar-group) chromosome 6 clone P0499E08, ***
SEQUENCING IN PROGRESS ***
Length = 85150
Score = 42.1 bits (21), Expect = 0.27
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 255 tattttgcaccaccatgaaggattgtccggccatagtaatg 295
||||| ||||||||||| || ||||| |||||| |||||||
Sbjct: 41386 tatttggcaccaccatgcagaattgtgcggccaaagtaatg 41426
>dbj|AK100271.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023069L11, full
insert sequence
Length = 2442
Score = 42.1 bits (21), Expect = 0.27
Identities = 36/41 (87%)
Strand = Plus / Minus
Query: 255 tattttgcaccaccatgaaggattgtccggccatagtaatg 295
||||| ||||||||||| || ||||| |||||| |||||||
Sbjct: 2395 tatttggcaccaccatgcagaattgtgcggccaaagtaatg 2355
>gb|AACV01013162.1| Oryza sativa (japonica cultivar-group) chromosome 6 Ctg013162, whole
genome shotgun sequence
Length = 37554
Score = 42.1 bits (21), Expect = 0.27
Identities = 36/41 (87%)
Strand = Plus / Minus
Query: 255 tattttgcaccaccatgaaggattgtccggccatagtaatg 295
||||| ||||||||||| || ||||| |||||| |||||||
Sbjct: 36472 tatttggcaccaccatgcagaattgtgcggccaaagtaatg 36432
>dbj|AP007226.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
clone:OSJNBb0036B04
Length = 136159
Score = 42.1 bits (21), Expect = 0.27
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 255 tattttgcaccaccatgaaggattgtccggccatagtaatg 295
||||| ||||||||||| || ||||| |||||| |||||||
Sbjct: 13855 tatttggcaccaccatgcagaattgtgcggccaaagtaatg 13895
>dbj|AP007257.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
clone:OSJNBb0019L07
Length = 131650
Score = 42.1 bits (21), Expect = 0.27
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 255 tattttgcaccaccatgaaggattgtccggccatagtaatg 295
||||| ||||||||||| || ||||| |||||| |||||||
Sbjct: 124249 tatttggcaccaccatgcagaattgtgcggccaaagtaatg 124289
>gb|CH401209.1| Oryza sativa (japonica cultivar-group) chromosome 6 scaffold000046 genomic
scaffold, whole genome shotgun sequence
Length = 8607552
Score = 42.1 bits (21), Expect = 0.27
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 255 tattttgcaccaccatgaaggattgtccggccatagtaatg 295
||||| ||||||||||| || ||||| |||||| |||||||
Sbjct: 3913175 tatttggcaccaccatgcagaattgtgcggccaaagtaatg 3913215
>gb|CM000143.1| Oryza sativa (japonica cultivar-group) chromosome 6, whole genome shotgun
sequence
Length = 29740507
Score = 42.1 bits (21), Expect = 0.27
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 255 tattttgcaccaccatgaaggattgtccggccatagtaatg 295
||||| ||||||||||| || ||||| |||||| |||||||
Sbjct: 3913175 tatttggcaccaccatgcagaattgtgcggccaaagtaatg 3913215
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
sequence
Length = 30731886
Score = 42.1 bits (21), Expect = 0.27
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 255 tattttgcaccaccatgaaggattgtccggccatagtaatg 295
||||| ||||||||||| || ||||| |||||| |||||||
Sbjct: 4080596 tatttggcaccaccatgcagaattgtgcggccaaagtaatg 4080636
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 670,097
Number of Sequences: 438736
Number of extensions: 670097
Number of successful extensions: 13442
Number of sequences better than 0.5: 43
Number of HSP's better than 0.5 without gapping: 51
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 12909
Number of HSP's gapped (non-prelim): 532
length of query: 480
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 459
effective length of database: 2,791,206,460
effective search space: 1281163765140
effective search space used: 1281163765140
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)