BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QCK30g08.yg.2.1
(164 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CB669622.1|CB669622 OSJNEe02D23.f OSJNEe Oryza sativa (j... 198 6e-049
dbj|AK066269.1| Oryza sativa (japonica cultivar-group) cDNA... 198 6e-049
ref|XM_482070.1| Oryza sativa (japonica cultivar-group), mRNA 198 6e-049
gb|AU062996.1|AU062996 AU062996 Rice callus Oryza sativa (j... 190 1e-046
dbj|AB096863.1| Oryza sativa (japonica cultivar-group) OsUG... 190 1e-046
gb|CB672510.1|CB672510 OSJNEe06J08.f OSJNEe Oryza sativa (j... 157 2e-036
dbj|AK121426.1| Oryza sativa (japonica cultivar-group) cDNA... 135 8e-030
ref|XM_450508.1| Oryza sativa (japonica cultivar-group), mRNA 135 8e-030
ref|XM_450509.1| Oryza sativa (japonica cultivar-group), mRNA 135 8e-030
dbj|AP004631.1| Oryza sativa (japonica cultivar-group) chro... 103 3e-020
dbj|AP004397.3| Oryza sativa (japonica cultivar-group) geno... 103 3e-020
gb|AACV01018313.1| Oryza sativa (japonica cultivar-group) c... 103 3e-020
ref|NT_107239.1| Oryza sativa (japonica cultivar-group) 103 3e-020
gb|CH401230.1| Oryza sativa (japonica cultivar-group) chrom... 103 3e-020
gb|CM000145.1| Oryza sativa (japonica cultivar-group) chrom... 103 3e-020
dbj|AP008214.1| Oryza sativa (japonica cultivar-group) geno... 103 3e-020
dbj|AP005879.3| Oryza sativa (japonica cultivar-group) geno... 88 2e-015
gb|AACV01019597.1| Oryza sativa (japonica cultivar-group) c... 88 2e-015
ref|NT_107081.1| Oryza sativa (japonica cultivar-group) 88 2e-015
gb|CH401241.1| Oryza sativa (japonica cultivar-group) chrom... 88 2e-015
gb|CM000146.1| Oryza sativa (japonica cultivar-group) chrom... 88 2e-015
dbj|AP008215.1| Oryza sativa (japonica cultivar-group) geno... 88 2e-015
>gb|CB669622.1|CB669622 OSJNEe02D23.f OSJNEe Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEe02D23 5', mRNA sequence
Length = 884
Score = 198 bits (100), Expect = 6e-049
Identities = 133/144 (92%)
Strand = Plus / Plus
Query: 1 ggatcacccaaaaactcaccctgcacagaaaaatttcctcttactccaaacaatccatat 60
|||||||| || |||||||||||||||||| | |||||||| ||||||||||||||||||
Sbjct: 33 ggatcaccgaagaactcaccctgcacagaagagtttcctctcactccaaacaatccatat 92
Query: 61 ggcaaaacaaagctcgttgttgaggatatttgccgggatatctaccgttcagatcctgaa 120
|||||||||||||| |||||||| ||||||||||| |||||||||||| |||||||||||
Sbjct: 93 ggcaaaacaaagcttgttgttgaagatatttgccgtgatatctaccgtacagatcctgaa 152
Query: 121 tggaagatcattttacttaggtac 144
|||||||| ||| |||||||||||
Sbjct: 153 tggaagattattctacttaggtac 176
>dbj|AK066269.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013059D16, full
insert sequence
Length = 1878
Score = 198 bits (100), Expect = 6e-049
Identities = 133/144 (92%)
Strand = Plus / Plus
Query: 1 ggatcacccaaaaactcaccctgcacagaaaaatttcctcttactccaaacaatccatat 60
|||||||| || |||||||||||||||||| | |||||||| ||||||||||||||||||
Sbjct: 677 ggatcaccgaagaactcaccctgcacagaagagtttcctctcactccaaacaatccatat 736
Query: 61 ggcaaaacaaagctcgttgttgaggatatttgccgggatatctaccgttcagatcctgaa 120
|||||||||||||| |||||||| ||||||||||| |||||||||||| |||||||||||
Sbjct: 737 ggcaaaacaaagcttgttgttgaagatatttgccgtgatatctaccgtacagatcctgaa 796
Query: 121 tggaagatcattttacttaggtac 144
|||||||| ||| |||||||||||
Sbjct: 797 tggaagattattctacttaggtac 820
>ref|XM_482070.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 1878
Score = 198 bits (100), Expect = 6e-049
Identities = 133/144 (92%)
Strand = Plus / Plus
Query: 1 ggatcacccaaaaactcaccctgcacagaaaaatttcctcttactccaaacaatccatat 60
|||||||| || |||||||||||||||||| | |||||||| ||||||||||||||||||
Sbjct: 677 ggatcaccgaagaactcaccctgcacagaagagtttcctctcactccaaacaatccatat 736
Query: 61 ggcaaaacaaagctcgttgttgaggatatttgccgggatatctaccgttcagatcctgaa 120
|||||||||||||| |||||||| ||||||||||| |||||||||||| |||||||||||
Sbjct: 737 ggcaaaacaaagcttgttgttgaagatatttgccgtgatatctaccgtacagatcctgaa 796
Query: 121 tggaagatcattttacttaggtac 144
|||||||| ||| |||||||||||
Sbjct: 797 tggaagattattctacttaggtac 820
>gb|AU062996.1|AU062996 AU062996 Rice callus Oryza sativa (japonica cultivar-group) cDNA
clone C52249_2A, mRNA sequence
Length = 312
Score = 190 bits (96), Expect = 1e-046
Identities = 123/132 (93%)
Strand = Plus / Plus
Query: 13 aactcaccctgcacagaaaaatttcctcttactccaaacaatccatatggcaaaacaaag 72
|||||||||||||||||| | |||||||| ||||||||||||||||||||||||||||||
Sbjct: 29 aactcaccctgcacagaagagtttcctctcactccaaacaatccatatggcaaaacaaag 88
Query: 73 ctcgttgttgaggatatttgccgggatatctaccgttcagatcctgaatggaagatcatt 132
|| |||||||| ||||||||||| |||||||||||| ||||||||||||||||||| |||
Sbjct: 89 cttgttgttgaagatatttgccgtgatatctaccgtacagatcctgaatggaagattatt 148
Query: 133 ttacttaggtac 144
|||||||||||
Sbjct: 149 ctacttaggtac 160
>dbj|AB096863.1| Oryza sativa (japonica cultivar-group) OsUGE-2 mRNA for putative
UDP-glucose 4-epimerase, complete cds
Length = 1736
Score = 190 bits (96), Expect = 1e-046
Identities = 132/144 (91%)
Strand = Plus / Plus
Query: 1 ggatcacccaaaaactcaccctgcacagaaaaatttcctcttactccaaacaatccatat 60
|||||||| || ||||||||||| |||||| | |||||||| ||||||||||||||||||
Sbjct: 652 ggatcaccgaagaactcaccctggacagaagagtttcctctcactccaaacaatccatat 711
Query: 61 ggcaaaacaaagctcgttgttgaggatatttgccgggatatctaccgttcagatcctgaa 120
|||||||||||||| |||||||| ||||||||||| |||||||||||| |||||||||||
Sbjct: 712 ggcaaaacaaagcttgttgttgaagatatttgccgtgatatctaccgtacagatcctgaa 771
Query: 121 tggaagatcattttacttaggtac 144
|||||||| ||| |||||||||||
Sbjct: 772 tggaagattattctacttaggtac 795
>gb|CB672510.1|CB672510 OSJNEe06J08.f OSJNEe Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEe06J08 5', mRNA sequence
Length = 777
Score = 157 bits (79), Expect = 2e-036
Identities = 109/119 (91%)
Strand = Plus / Plus
Query: 1 ggatcacccaaaaactcaccctgcacagaaaaatttcctcttactccaaacaatccatat 60
|||||||| || |||||||||||||||||| | |||||||| ||||| ||||||||||||
Sbjct: 659 ggatcaccgaagaactcaccctgcacagaagagtttcctctcactcccaacaatccatat 718
Query: 61 ggcaaaacaaagctcgttgttgaggatatttgccgggatatctaccgttcagatcctga 119
|||||||||||||| |||||||| ||||||||||| |||||||||||| ||||||||||
Sbjct: 719 ggcaaaacaaagcttgttgttgaagatatttgccgtgatatctaccgtacagatcctga 777
>dbj|AK121426.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023135L03, full
insert sequence
Length = 1419
Score = 135 bits (68), Expect = 8e-030
Identities = 125/144 (86%)
Strand = Plus / Plus
Query: 1 ggatcacccaaaaactcaccctgcacagaaaaatttcctcttactccaaacaatccatat 60
|||||||| ||||||||||||||||||||| | |||||||| |||||| |||||||||||
Sbjct: 530 ggatcacctaaaaactcaccctgcacagaagagtttcctctcactccacacaatccatat 589
Query: 61 ggcaaaacaaagctcgttgttgaggatatttgccgggatatctaccgttcagatcctgaa 120
|||| ||| |||||| | | ||||| |||||||| ||||| |||| ||||||| |||||
Sbjct: 590 ggcagaaccaagctcatagcagaggagatttgccgtgatatataccattcagattctgaa 649
Query: 121 tggaagatcattttacttaggtac 144
|||| || |||||||||||||||
Sbjct: 650 tggagcataattttacttaggtac 673
>ref|XM_450508.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 1419
Score = 135 bits (68), Expect = 8e-030
Identities = 125/144 (86%)
Strand = Plus / Plus
Query: 1 ggatcacccaaaaactcaccctgcacagaaaaatttcctcttactccaaacaatccatat 60
|||||||| ||||||||||||||||||||| | |||||||| |||||| |||||||||||
Sbjct: 530 ggatcacctaaaaactcaccctgcacagaagagtttcctctcactccacacaatccatat 589
Query: 61 ggcaaaacaaagctcgttgttgaggatatttgccgggatatctaccgttcagatcctgaa 120
|||| ||| |||||| | | ||||| |||||||| ||||| |||| ||||||| |||||
Sbjct: 590 ggcagaaccaagctcatagcagaggagatttgccgtgatatataccattcagattctgaa 649
Query: 121 tggaagatcattttacttaggtac 144
|||| || |||||||||||||||
Sbjct: 650 tggagcataattttacttaggtac 673
>ref|XM_450509.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 1110
Score = 135 bits (68), Expect = 8e-030
Identities = 125/144 (86%)
Strand = Plus / Plus
Query: 1 ggatcacccaaaaactcaccctgcacagaaaaatttcctcttactccaaacaatccatat 60
|||||||| ||||||||||||||||||||| | |||||||| |||||| |||||||||||
Sbjct: 445 ggatcacctaaaaactcaccctgcacagaagagtttcctctcactccacacaatccatat 504
Query: 61 ggcaaaacaaagctcgttgttgaggatatttgccgggatatctaccgttcagatcctgaa 120
|||| ||| |||||| | | ||||| |||||||| ||||| |||| ||||||| |||||
Sbjct: 505 ggcagaaccaagctcatagcagaggagatttgccgtgatatataccattcagattctgaa 564
Query: 121 tggaagatcattttacttaggtac 144
|||| || |||||||||||||||
Sbjct: 565 tggagcataattttacttaggtac 588
>dbj|AP004631.1| Oryza sativa (japonica cultivar-group) chromosome 8 clone P0508B09, ***
SEQUENCING IN PROGRESS ***
Length = 144557
Score = 103 bits (52), Expect = 3e-020
Identities = 67/72 (93%)
Strand = Plus / Minus
Query: 1 ggatcacccaaaaactcaccctgcacagaaaaatttcctcttactccaaacaatccatat 60
|||||||| || |||||||||||||||||| | |||||||| ||||||||||||||||||
Sbjct: 121821 ggatcaccgaagaactcaccctgcacagaagagtttcctctcactccaaacaatccatat 121762
Query: 61 ggcaaaacaaag 72
||||||||||||
Sbjct: 121761 ggcaaaacaaag 121750
Score = 99.6 bits (50), Expect = 4e-019
Identities = 68/74 (91%)
Strand = Plus / Minus
Query: 71 agctcgttgttgaggatatttgccgggatatctaccgttcagatcctgaatggaagatca 130
|||| |||||||| ||||||||||| |||||||||||| ||||||||||||||||||| |
Sbjct: 121660 agcttgttgttgaagatatttgccgtgatatctaccgtacagatcctgaatggaagatta 121601
Query: 131 ttttacttaggtac 144
|| |||||||||||
Sbjct: 121600 ttctacttaggtac 121587
>dbj|AP004397.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
clone:P0436B06
Length = 148947
Score = 103 bits (52), Expect = 3e-020
Identities = 67/72 (93%)
Strand = Plus / Minus
Query: 1 ggatcacccaaaaactcaccctgcacagaaaaatttcctcttactccaaacaatccatat 60
|||||||| || |||||||||||||||||| | |||||||| ||||||||||||||||||
Sbjct: 42274 ggatcaccgaagaactcaccctgcacagaagagtttcctctcactccaaacaatccatat 42215
Query: 61 ggcaaaacaaag 72
||||||||||||
Sbjct: 42214 ggcaaaacaaag 42203
Score = 99.6 bits (50), Expect = 4e-019
Identities = 68/74 (91%)
Strand = Plus / Minus
Query: 71 agctcgttgttgaggatatttgccgggatatctaccgttcagatcctgaatggaagatca 130
|||| |||||||| ||||||||||| |||||||||||| ||||||||||||||||||| |
Sbjct: 42113 agcttgttgttgaagatatttgccgtgatatctaccgtacagatcctgaatggaagatta 42054
Query: 131 ttttacttaggtac 144
|| |||||||||||
Sbjct: 42053 ttctacttaggtac 42040
>gb|AACV01018313.1| Oryza sativa (japonica cultivar-group) chromosome 8 Ctg018313, whole
genome shotgun sequence
Length = 27159
Score = 103 bits (52), Expect = 3e-020
Identities = 67/72 (93%)
Strand = Plus / Minus
Query: 1 ggatcacccaaaaactcaccctgcacagaaaaatttcctcttactccaaacaatccatat 60
|||||||| || |||||||||||||||||| | |||||||| ||||||||||||||||||
Sbjct: 15519 ggatcaccgaagaactcaccctgcacagaagagtttcctctcactccaaacaatccatat 15460
Query: 61 ggcaaaacaaag 72
||||||||||||
Sbjct: 15459 ggcaaaacaaag 15448
Score = 99.6 bits (50), Expect = 4e-019
Identities = 68/74 (91%)
Strand = Plus / Minus
Query: 71 agctcgttgttgaggatatttgccgggatatctaccgttcagatcctgaatggaagatca 130
|||| |||||||| ||||||||||| |||||||||||| ||||||||||||||||||| |
Sbjct: 15358 agcttgttgttgaagatatttgccgtgatatctaccgtacagatcctgaatggaagatta 15299
Query: 131 ttttacttaggtac 144
|| |||||||||||
Sbjct: 15298 ttctacttaggtac 15285
>ref|NT_107239.1| Oryza sativa (japonica cultivar-group)
Length = 28196693
Score = 103 bits (52), Expect = 3e-020
Identities = 67/72 (93%)
Strand = Plus / Minus
Query: 1 ggatcacccaaaaactcaccctgcacagaaaaatttcctcttactccaaacaatccatat 60
|||||||| || |||||||||||||||||| | |||||||| ||||||||||||||||||
Sbjct: 17327537 ggatcaccgaagaactcaccctgcacagaagagtttcctctcactccaaacaatccatat 17327478
Query: 61 ggcaaaacaaag 72
||||||||||||
Sbjct: 17327477 ggcaaaacaaag 17327466
Score = 99.6 bits (50), Expect = 4e-019
Identities = 68/74 (91%)
Strand = Plus / Minus
Query: 71 agctcgttgttgaggatatttgccgggatatctaccgttcagatcctgaatggaagatca 130
|||| |||||||| ||||||||||| |||||||||||| ||||||||||||||||||| |
Sbjct: 17327376 agcttgttgttgaagatatttgccgtgatatctaccgtacagatcctgaatggaagatta 17327317
Query: 131 ttttacttaggtac 144
|| |||||||||||
Sbjct: 17327316 ttctacttaggtac 17327303
>gb|CH401230.1| Oryza sativa (japonica cultivar-group) chromosome 8 scaffold000067 genomic
scaffold, whole genome shotgun sequence
Length = 19501165
Score = 103 bits (52), Expect = 3e-020
Identities = 67/72 (93%)
Strand = Plus / Minus
Query: 1 ggatcacccaaaaactcaccctgcacagaaaaatttcctcttactccaaacaatccatat 60
|||||||| || |||||||||||||||||| | |||||||| ||||||||||||||||||
Sbjct: 8794549 ggatcaccgaagaactcaccctgcacagaagagtttcctctcactccaaacaatccatat 8794490
Query: 61 ggcaaaacaaag 72
||||||||||||
Sbjct: 8794489 ggcaaaacaaag 8794478
Score = 99.6 bits (50), Expect = 4e-019
Identities = 68/74 (91%)
Strand = Plus / Minus
Query: 71 agctcgttgttgaggatatttgccgggatatctaccgttcagatcctgaatggaagatca 130
|||| |||||||| ||||||||||| |||||||||||| ||||||||||||||||||| |
Sbjct: 8794388 agcttgttgttgaagatatttgccgtgatatctaccgtacagatcctgaatggaagatta 8794329
Query: 131 ttttacttaggtac 144
|| |||||||||||
Sbjct: 8794328 ttctacttaggtac 8794315
>gb|CM000145.1| Oryza sativa (japonica cultivar-group) chromosome 8, whole genome shotgun
sequence
Length = 27103171
Score = 103 bits (52), Expect = 3e-020
Identities = 67/72 (93%)
Strand = Plus / Minus
Query: 1 ggatcacccaaaaactcaccctgcacagaaaaatttcctcttactccaaacaatccatat 60
|||||||| || |||||||||||||||||| | |||||||| ||||||||||||||||||
Sbjct: 16396555 ggatcaccgaagaactcaccctgcacagaagagtttcctctcactccaaacaatccatat 16396496
Query: 61 ggcaaaacaaag 72
||||||||||||
Sbjct: 16396495 ggcaaaacaaag 16396484
Score = 99.6 bits (50), Expect = 4e-019
Identities = 68/74 (91%)
Strand = Plus / Minus
Query: 71 agctcgttgttgaggatatttgccgggatatctaccgttcagatcctgaatggaagatca 130
|||| |||||||| ||||||||||| |||||||||||| ||||||||||||||||||| |
Sbjct: 16396394 agcttgttgttgaagatatttgccgtgatatctaccgtacagatcctgaatggaagatta 16396335
Query: 131 ttttacttaggtac 144
|| |||||||||||
Sbjct: 16396334 ttctacttaggtac 16396321
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
sequence
Length = 28434780
Score = 103 bits (52), Expect = 3e-020
Identities = 67/72 (93%)
Strand = Plus / Minus
Query: 1 ggatcacccaaaaactcaccctgcacagaaaaatttcctcttactccaaacaatccatat 60
|||||||| || |||||||||||||||||| | |||||||| ||||||||||||||||||
Sbjct: 17565624 ggatcaccgaagaactcaccctgcacagaagagtttcctctcactccaaacaatccatat 17565565
Query: 61 ggcaaaacaaag 72
||||||||||||
Sbjct: 17565564 ggcaaaacaaag 17565553
Score = 99.6 bits (50), Expect = 4e-019
Identities = 68/74 (91%)
Strand = Plus / Minus
Query: 71 agctcgttgttgaggatatttgccgggatatctaccgttcagatcctgaatggaagatca 130
|||| |||||||| ||||||||||| |||||||||||| ||||||||||||||||||| |
Sbjct: 17565463 agcttgttgttgaagatatttgccgtgatatctaccgtacagatcctgaatggaagatta 17565404
Query: 131 ttttacttaggtac 144
|| |||||||||||
Sbjct: 17565403 ttctacttaggtac 17565390
>dbj|AP005879.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
clone:OSJNBb0024J13
Length = 127614
Score = 87.7 bits (44), Expect = 2e-015
Identities = 59/64 (92%)
Strand = Plus / Minus
Query: 1 ggatcacccaaaaactcaccctgcacagaaaaatttcctcttactccaaacaatccatat 60
|||||||| ||||||||||||||||||||| | |||||||| |||||| |||||||||||
Sbjct: 70681 ggatcacctaaaaactcaccctgcacagaagagtttcctctcactccacacaatccatat 70622
Query: 61 ggca 64
||||
Sbjct: 70621 ggca 70618
Score = 61.9 bits (31), Expect = 9e-008
Identities = 55/63 (87%)
Strand = Plus / Minus
Query: 82 gaggatatttgccgggatatctaccgttcagatcctgaatggaagatcattttacttagg 141
||||| |||||||| ||||| |||| ||||||| ||||||||| || ||||||||||||
Sbjct: 70520 gaggagatttgccgtgatatataccattcagattctgaatggagcataattttacttagg 70461
Query: 142 tac 144
|||
Sbjct: 70460 tac 70458
>gb|AACV01019597.1| Oryza sativa (japonica cultivar-group) chromosome 9 Ctg019597, whole
genome shotgun sequence
Length = 35375
Score = 87.7 bits (44), Expect = 2e-015
Identities = 59/64 (92%)
Strand = Plus / Plus
Query: 1 ggatcacccaaaaactcaccctgcacagaaaaatttcctcttactccaaacaatccatat 60
|||||||| ||||||||||||||||||||| | |||||||| |||||| |||||||||||
Sbjct: 25110 ggatcacctaaaaactcaccctgcacagaagagtttcctctcactccacacaatccatat 25169
Query: 61 ggca 64
||||
Sbjct: 25170 ggca 25173
Score = 61.9 bits (31), Expect = 9e-008
Identities = 55/63 (87%)
Strand = Plus / Plus
Query: 82 gaggatatttgccgggatatctaccgttcagatcctgaatggaagatcattttacttagg 141
||||| |||||||| ||||| |||| ||||||| ||||||||| || ||||||||||||
Sbjct: 25271 gaggagatttgccgtgatatataccattcagattctgaatggagcataattttacttagg 25330
Query: 142 tac 144
|||
Sbjct: 25331 tac 25333
>ref|NT_107081.1| Oryza sativa (japonica cultivar-group)
Length = 2169725
Score = 87.7 bits (44), Expect = 2e-015
Identities = 59/64 (92%)
Strand = Plus / Minus
Query: 1 ggatcacccaaaaactcaccctgcacagaaaaatttcctcttactccaaacaatccatat 60
|||||||| ||||||||||||||||||||| | |||||||| |||||| |||||||||||
Sbjct: 199268 ggatcacctaaaaactcaccctgcacagaagagtttcctctcactccacacaatccatat 199209
Query: 61 ggca 64
||||
Sbjct: 199208 ggca 199205
Score = 61.9 bits (31), Expect = 9e-008
Identities = 55/63 (87%)
Strand = Plus / Minus
Query: 82 gaggatatttgccgggatatctaccgttcagatcctgaatggaagatcattttacttagg 141
||||| |||||||| ||||| |||| ||||||| ||||||||| || ||||||||||||
Sbjct: 199107 gaggagatttgccgtgatatataccattcagattctgaatggagcataattttacttagg 199048
Query: 142 tac 144
|||
Sbjct: 199047 tac 199045
>gb|CH401241.1| Oryza sativa (japonica cultivar-group) chromosome 9 scaffold000078 genomic
scaffold, whole genome shotgun sequence
Length = 4067473
Score = 87.7 bits (44), Expect = 2e-015
Identities = 59/64 (92%)
Strand = Plus / Minus
Query: 1 ggatcacccaaaaactcaccctgcacagaaaaatttcctcttactccaaacaatccatat 60
|||||||| ||||||||||||||||||||| | |||||||| |||||| |||||||||||
Sbjct: 2868442 ggatcacctaaaaactcaccctgcacagaagagtttcctctcactccacacaatccatat 2868383
Query: 61 ggca 64
||||
Sbjct: 2868382 ggca 2868379
Score = 61.9 bits (31), Expect = 9e-008
Identities = 55/63 (87%)
Strand = Plus / Minus
Query: 82 gaggatatttgccgggatatctaccgttcagatcctgaatggaagatcattttacttagg 141
||||| |||||||| ||||| |||| ||||||| ||||||||| || ||||||||||||
Sbjct: 2868281 gaggagatttgccgtgatatataccattcagattctgaatggagcataattttacttagg 2868222
Query: 142 tac 144
|||
Sbjct: 2868221 tac 2868219
>gb|CM000146.1| Oryza sativa (japonica cultivar-group) chromosome 9, whole genome shotgun
sequence
Length = 21543637
Score = 87.7 bits (44), Expect = 2e-015
Identities = 59/64 (92%)
Strand = Plus / Minus
Query: 1 ggatcacccaaaaactcaccctgcacagaaaaatttcctcttactccaaacaatccatat 60
|||||||| ||||||||||||||||||||| | |||||||| |||||| |||||||||||
Sbjct: 8274680 ggatcacctaaaaactcaccctgcacagaagagtttcctctcactccacacaatccatat 8274621
Query: 61 ggca 64
||||
Sbjct: 8274620 ggca 8274617
Score = 61.9 bits (31), Expect = 9e-008
Identities = 55/63 (87%)
Strand = Plus / Minus
Query: 82 gaggatatttgccgggatatctaccgttcagatcctgaatggaagatcattttacttagg 141
||||| |||||||| ||||| |||| ||||||| ||||||||| || ||||||||||||
Sbjct: 8274519 gaggagatttgccgtgatatataccattcagattctgaatggagcataattttacttagg 8274460
Query: 142 tac 144
|||
Sbjct: 8274459 tac 8274457
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
sequence
Length = 22696651
Score = 87.7 bits (44), Expect = 2e-015
Identities = 59/64 (92%)
Strand = Plus / Minus
Query: 1 ggatcacccaaaaactcaccctgcacagaaaaatttcctcttactccaaacaatccatat 60
|||||||| ||||||||||||||||||||| | |||||||| |||||| |||||||||||
Sbjct: 9387267 ggatcacctaaaaactcaccctgcacagaagagtttcctctcactccacacaatccatat 9387208
Query: 61 ggca 64
||||
Sbjct: 9387207 ggca 9387204
Score = 61.9 bits (31), Expect = 9e-008
Identities = 55/63 (87%)
Strand = Plus / Minus
Query: 82 gaggatatttgccgggatatctaccgttcagatcctgaatggaagatcattttacttagg 141
||||| |||||||| ||||| |||| ||||||| ||||||||| || ||||||||||||
Sbjct: 9387106 gaggagatttgccgtgatatataccattcagattctgaatggagcataattttacttagg 9387047
Query: 142 tac 144
|||
Sbjct: 9387046 tac 9387044
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 253,131
Number of Sequences: 438736
Number of extensions: 253131
Number of successful extensions: 4909
Number of sequences better than 0.5: 22
Number of HSP's better than 0.5 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 4814
Number of HSP's gapped (non-prelim): 95
length of query: 164
length of database: 2,800,419,916
effective HSP length: 20
effective length of query: 144
effective length of database: 2,791,645,196
effective search space: 401996908224
effective search space used: 401996908224
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)