BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QCH30c02.yg.2.1
(722 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|AP004789.3| Oryza sativa (japonica cultivar-group) geno... 402 e-109
dbj|AP005778.3| Oryza sativa (japonica cultivar-group) geno... 402 e-109
gb|AACV01004078.1| Oryza sativa (japonica cultivar-group) c... 402 e-109
ref|XM_465291.1| Oryza sativa (japonica cultivar-group), mRNA 402 e-109
ref|NT_107178.1| Oryza sativa (japonica cultivar-group) 402 e-109
gb|CH401169.1| Oryza sativa (japonica cultivar-group) chrom... 402 e-109
gb|CM000139.1| Oryza sativa (japonica cultivar-group) chrom... 402 e-109
dbj|AP008208.1| Oryza sativa (japonica cultivar-group) geno... 402 e-109
gb|AQ258518.1|AQ258518 nbxb0020D06f CUGI Rice BAC Library O... 389 e-105
gb|CB685927.1|CB685927 OSJNEf16M10.f OSJNEf Oryza sativa (j... 196 1e-047
gb|AACV01006891.1| Oryza sativa (japonica cultivar-group) c... 48 0.007
gb|CH401174.1| Oryza sativa (japonica cultivar-group) chrom... 48 0.007
gb|CM000140.1| Oryza sativa (japonica cultivar-group) chrom... 48 0.007
>dbj|AP004789.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
clone:P0476C12
Length = 157570
Score = 402 bits (203), Expect = e-109
Identities = 417/491 (84%)
Strand = Plus / Minus
Query: 108 gaggagtcctgatcatcagctgtatcgccagtgaggggaccaggaagaagtcctatctta 167
||||| ||||||||||||||||| || || |||||| ||||||||| || | ||| |||
Sbjct: 123661 gaggactcctgatcatcagctgtgtcaccggtgaggcaaccaggaagtaggcttatttta 123602
Query: 168 tgcaatcttaaaatacaatctattatgttcctccatccgctgcgtatgtgatcaccataa 227
|||||||||||||| ||||||| |||||||||||| || ||||||||||||||||||| |
Sbjct: 123601 tgcaatcttaaaatgcaatctactatgttcctccacccactgcgtatgtgatcaccatga 123542
Query: 228 acagttgctatagtgaaaacagcttctgttgccattctagccttggtatcctccccaaac 287
|||||||||||| |||||||| || |||||||||||||||||||| ||||| || ||
Sbjct: 123541 gtagttgctatagtaaaaacagcctcggttgccattctagccttggtgtcctcaccgaaa 123482
Query: 288 gctgttacaggatcgtcaatgtaggaagtggtcaacaaagtggtgaatttagatagtgcc 347
| |||||||||||| | ||| ||||||||| ||| ||| |||||||| ||| ||||||||
Sbjct: 123481 gttgttacaggatcattaatataggaagtgttcagcaaggtggtgaacttacatagtgcc 123422
Query: 348 acaacaagatcattcagaacatcaccaagatgatagaatgcagccagtttcgccactgac 407
|||||||||||||||| |||||| |||||||||||||||| |||| |||||||||||
Sbjct: 123421 acaacaagatcattcaacacatcatcaagatgatagaatgccgccaacttcgccactgat 123362
Query: 408 agaaagccgtcaatgcatcctgtaagaacctcttcatgctcaacgttatcaaaaaccaca 467
||||| || | ||||||||||||||| | ||||||||||||||| ||||||||||||||
Sbjct: 123361 agaaaaccattaatgcatcctgtaaggaactcttcatgctcaacattatcaaaaaccact 123302
Query: 468 gaaacagcagcaactgttggtccggccataacagaaaacatgtcatgatcaagaaatggg 527
|| | ||||||||| |||||||| ||||| | || ||||||||||||||||||||| |||
Sbjct: 123301 gagatagcagcaaccgttggtccagccatgatagtaaacatgtcatgatcaagaaaaggg 123242
Query: 528 taagagctacaagcaatatacattgatgnnctctttgaccnnnacannagatnaacccaa 587
| ||| ||||||||| || ||||| ||||||||| ||| |||| ||||||
Sbjct: 123241 aaggagtcacaagcaatgtatgctgatgtcctctttgacttccacatcagatcaacccac 123182
Query: 588 cgactgaaaga 598
|| ||||||||
Sbjct: 123181 cggctgaaaga 123171
Score = 48.1 bits (24), Expect = 0.007
Identities = 76/96 (79%)
Strand = Plus / Minus
Query: 503 aaacatgtcatgatcaagaaatgggtaagagctacaagcaatatacattgatgnnctctt 562
||||||||||||||||||||| ||| | ||| ||||||||| || ||||| |||||
Sbjct: 76219 aaacatgtcatgatcaagaaaagggaaggagtcacaagcaatgtatgctgatgtcctctt 76160
Query: 563 tgaccnnnacannagatnaacccaacgactgaaaga 598
|||| ||| |||| |||||| || ||||||||
Sbjct: 76159 tgacttccacatcagatcaacccaccggctgaaaga 76124
>dbj|AP005778.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
clone:OSJNBb0042G06
Length = 123571
Score = 402 bits (203), Expect = e-109
Identities = 417/491 (84%)
Strand = Plus / Minus
Query: 108 gaggagtcctgatcatcagctgtatcgccagtgaggggaccaggaagaagtcctatctta 167
||||| ||||||||||||||||| || || |||||| ||||||||| || | ||| |||
Sbjct: 17114 gaggactcctgatcatcagctgtgtcaccggtgaggcaaccaggaagtaggcttatttta 17055
Query: 168 tgcaatcttaaaatacaatctattatgttcctccatccgctgcgtatgtgatcaccataa 227
|||||||||||||| ||||||| |||||||||||| || ||||||||||||||||||| |
Sbjct: 17054 tgcaatcttaaaatgcaatctactatgttcctccacccactgcgtatgtgatcaccatga 16995
Query: 228 acagttgctatagtgaaaacagcttctgttgccattctagccttggtatcctccccaaac 287
|||||||||||| |||||||| || |||||||||||||||||||| ||||| || ||
Sbjct: 16994 gtagttgctatagtaaaaacagcctcggttgccattctagccttggtgtcctcaccgaaa 16935
Query: 288 gctgttacaggatcgtcaatgtaggaagtggtcaacaaagtggtgaatttagatagtgcc 347
| |||||||||||| | ||| ||||||||| ||| ||| |||||||| ||| ||||||||
Sbjct: 16934 gttgttacaggatcattaatataggaagtgttcagcaaggtggtgaacttacatagtgcc 16875
Query: 348 acaacaagatcattcagaacatcaccaagatgatagaatgcagccagtttcgccactgac 407
|||||||||||||||| |||||| |||||||||||||||| |||| |||||||||||
Sbjct: 16874 acaacaagatcattcaacacatcatcaagatgatagaatgccgccaacttcgccactgat 16815
Query: 408 agaaagccgtcaatgcatcctgtaagaacctcttcatgctcaacgttatcaaaaaccaca 467
||||| || | ||||||||||||||| | ||||||||||||||| ||||||||||||||
Sbjct: 16814 agaaaaccattaatgcatcctgtaaggaactcttcatgctcaacattatcaaaaaccact 16755
Query: 468 gaaacagcagcaactgttggtccggccataacagaaaacatgtcatgatcaagaaatggg 527
|| | ||||||||| |||||||| ||||| | || ||||||||||||||||||||| |||
Sbjct: 16754 gagatagcagcaaccgttggtccagccatgatagtaaacatgtcatgatcaagaaaaggg 16695
Query: 528 taagagctacaagcaatatacattgatgnnctctttgaccnnnacannagatnaacccaa 587
| ||| ||||||||| || ||||| ||||||||| ||| |||| ||||||
Sbjct: 16694 aaggagtcacaagcaatgtatgctgatgtcctctttgacttccacatcagatcaacccac 16635
Query: 588 cgactgaaaga 598
|| ||||||||
Sbjct: 16634 cggctgaaaga 16624
>gb|AACV01004078.1| Oryza sativa (japonica cultivar-group) chromosome 2 Ctg004078, whole
genome shotgun sequence
Length = 22546
Score = 402 bits (203), Expect = e-109
Identities = 417/491 (84%)
Strand = Plus / Minus
Query: 108 gaggagtcctgatcatcagctgtatcgccagtgaggggaccaggaagaagtcctatctta 167
||||| ||||||||||||||||| || || |||||| ||||||||| || | ||| |||
Sbjct: 10311 gaggactcctgatcatcagctgtgtcaccggtgaggcaaccaggaagtaggcttatttta 10252
Query: 168 tgcaatcttaaaatacaatctattatgttcctccatccgctgcgtatgtgatcaccataa 227
|||||||||||||| ||||||| |||||||||||| || ||||||||||||||||||| |
Sbjct: 10251 tgcaatcttaaaatgcaatctactatgttcctccacccactgcgtatgtgatcaccatga 10192
Query: 228 acagttgctatagtgaaaacagcttctgttgccattctagccttggtatcctccccaaac 287
|||||||||||| |||||||| || |||||||||||||||||||| ||||| || ||
Sbjct: 10191 gtagttgctatagtaaaaacagcctcggttgccattctagccttggtgtcctcaccgaaa 10132
Query: 288 gctgttacaggatcgtcaatgtaggaagtggtcaacaaagtggtgaatttagatagtgcc 347
| |||||||||||| | ||| ||||||||| ||| ||| |||||||| ||| ||||||||
Sbjct: 10131 gttgttacaggatcattaatataggaagtgttcagcaaggtggtgaacttacatagtgcc 10072
Query: 348 acaacaagatcattcagaacatcaccaagatgatagaatgcagccagtttcgccactgac 407
|||||||||||||||| |||||| |||||||||||||||| |||| |||||||||||
Sbjct: 10071 acaacaagatcattcaacacatcatcaagatgatagaatgccgccaacttcgccactgat 10012
Query: 408 agaaagccgtcaatgcatcctgtaagaacctcttcatgctcaacgttatcaaaaaccaca 467
||||| || | ||||||||||||||| | ||||||||||||||| ||||||||||||||
Sbjct: 10011 agaaaaccattaatgcatcctgtaaggaactcttcatgctcaacattatcaaaaaccact 9952
Query: 468 gaaacagcagcaactgttggtccggccataacagaaaacatgtcatgatcaagaaatggg 527
|| | ||||||||| |||||||| ||||| | || ||||||||||||||||||||| |||
Sbjct: 9951 gagatagcagcaaccgttggtccagccatgatagtaaacatgtcatgatcaagaaaaggg 9892
Query: 528 taagagctacaagcaatatacattgatgnnctctttgaccnnnacannagatnaacccaa 587
| ||| ||||||||| || ||||| ||||||||| ||| |||| ||||||
Sbjct: 9891 aaggagtcacaagcaatgtatgctgatgtcctctttgacttccacatcagatcaacccac 9832
Query: 588 cgactgaaaga 598
|| ||||||||
Sbjct: 9831 cggctgaaaga 9821
>ref|XM_465291.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 4275
Score = 402 bits (203), Expect = e-109
Identities = 417/491 (84%)
Strand = Plus / Minus
Query: 108 gaggagtcctgatcatcagctgtatcgccagtgaggggaccaggaagaagtcctatctta 167
||||| ||||||||||||||||| || || |||||| ||||||||| || | ||| |||
Sbjct: 2696 gaggactcctgatcatcagctgtgtcaccggtgaggcaaccaggaagtaggcttatttta 2637
Query: 168 tgcaatcttaaaatacaatctattatgttcctccatccgctgcgtatgtgatcaccataa 227
|||||||||||||| ||||||| |||||||||||| || ||||||||||||||||||| |
Sbjct: 2636 tgcaatcttaaaatgcaatctactatgttcctccacccactgcgtatgtgatcaccatga 2577
Query: 228 acagttgctatagtgaaaacagcttctgttgccattctagccttggtatcctccccaaac 287
|||||||||||| |||||||| || |||||||||||||||||||| ||||| || ||
Sbjct: 2576 gtagttgctatagtaaaaacagcctcggttgccattctagccttggtgtcctcaccgaaa 2517
Query: 288 gctgttacaggatcgtcaatgtaggaagtggtcaacaaagtggtgaatttagatagtgcc 347
| |||||||||||| | ||| ||||||||| ||| ||| |||||||| ||| ||||||||
Sbjct: 2516 gttgttacaggatcattaatataggaagtgttcagcaaggtggtgaacttacatagtgcc 2457
Query: 348 acaacaagatcattcagaacatcaccaagatgatagaatgcagccagtttcgccactgac 407
|||||||||||||||| |||||| |||||||||||||||| |||| |||||||||||
Sbjct: 2456 acaacaagatcattcaacacatcatcaagatgatagaatgccgccaacttcgccactgat 2397
Query: 408 agaaagccgtcaatgcatcctgtaagaacctcttcatgctcaacgttatcaaaaaccaca 467
||||| || | ||||||||||||||| | ||||||||||||||| ||||||||||||||
Sbjct: 2396 agaaaaccattaatgcatcctgtaaggaactcttcatgctcaacattatcaaaaaccact 2337
Query: 468 gaaacagcagcaactgttggtccggccataacagaaaacatgtcatgatcaagaaatggg 527
|| | ||||||||| |||||||| ||||| | || ||||||||||||||||||||| |||
Sbjct: 2336 gagatagcagcaaccgttggtccagccatgatagtaaacatgtcatgatcaagaaaaggg 2277
Query: 528 taagagctacaagcaatatacattgatgnnctctttgaccnnnacannagatnaacccaa 587
| ||| ||||||||| || ||||| ||||||||| ||| |||| ||||||
Sbjct: 2276 aaggagtcacaagcaatgtatgctgatgtcctctttgacttccacatcagatcaacccac 2217
Query: 588 cgactgaaaga 598
|| ||||||||
Sbjct: 2216 cggctgaaaga 2206
>ref|NT_107178.1| Oryza sativa (japonica cultivar-group)
Length = 7645238
Score = 402 bits (203), Expect = e-109
Identities = 417/491 (84%)
Strand = Plus / Minus
Query: 108 gaggagtcctgatcatcagctgtatcgccagtgaggggaccaggaagaagtcctatctta 167
||||| ||||||||||||||||| || || |||||| ||||||||| || | ||| |||
Sbjct: 7180036 gaggactcctgatcatcagctgtgtcaccggtgaggcaaccaggaagtaggcttatttta 7179977
Query: 168 tgcaatcttaaaatacaatctattatgttcctccatccgctgcgtatgtgatcaccataa 227
|||||||||||||| ||||||| |||||||||||| || ||||||||||||||||||| |
Sbjct: 7179976 tgcaatcttaaaatgcaatctactatgttcctccacccactgcgtatgtgatcaccatga 7179917
Query: 228 acagttgctatagtgaaaacagcttctgttgccattctagccttggtatcctccccaaac 287
|||||||||||| |||||||| || |||||||||||||||||||| ||||| || ||
Sbjct: 7179916 gtagttgctatagtaaaaacagcctcggttgccattctagccttggtgtcctcaccgaaa 7179857
Query: 288 gctgttacaggatcgtcaatgtaggaagtggtcaacaaagtggtgaatttagatagtgcc 347
| |||||||||||| | ||| ||||||||| ||| ||| |||||||| ||| ||||||||
Sbjct: 7179856 gttgttacaggatcattaatataggaagtgttcagcaaggtggtgaacttacatagtgcc 7179797
Query: 348 acaacaagatcattcagaacatcaccaagatgatagaatgcagccagtttcgccactgac 407
|||||||||||||||| |||||| |||||||||||||||| |||| |||||||||||
Sbjct: 7179796 acaacaagatcattcaacacatcatcaagatgatagaatgccgccaacttcgccactgat 7179737
Query: 408 agaaagccgtcaatgcatcctgtaagaacctcttcatgctcaacgttatcaaaaaccaca 467
||||| || | ||||||||||||||| | ||||||||||||||| ||||||||||||||
Sbjct: 7179736 agaaaaccattaatgcatcctgtaaggaactcttcatgctcaacattatcaaaaaccact 7179677
Query: 468 gaaacagcagcaactgttggtccggccataacagaaaacatgtcatgatcaagaaatggg 527
|| | ||||||||| |||||||| ||||| | || ||||||||||||||||||||| |||
Sbjct: 7179676 gagatagcagcaaccgttggtccagccatgatagtaaacatgtcatgatcaagaaaaggg 7179617
Query: 528 taagagctacaagcaatatacattgatgnnctctttgaccnnnacannagatnaacccaa 587
| ||| ||||||||| || ||||| ||||||||| ||| |||| ||||||
Sbjct: 7179616 aaggagtcacaagcaatgtatgctgatgtcctctttgacttccacatcagatcaacccac 7179557
Query: 588 cgactgaaaga 598
|| ||||||||
Sbjct: 7179556 cggctgaaaga 7179546
Score = 48.1 bits (24), Expect = 0.007
Identities = 76/96 (79%)
Strand = Plus / Minus
Query: 503 aaacatgtcatgatcaagaaatgggtaagagctacaagcaatatacattgatgnnctctt 562
||||||||||||||||||||| ||| | ||| ||||||||| || ||||| |||||
Sbjct: 7132594 aaacatgtcatgatcaagaaaagggaaggagtcacaagcaatgtatgctgatgtcctctt 7132535
Query: 563 tgaccnnnacannagatnaacccaacgactgaaaga 598
|||| ||| |||| |||||| || ||||||||
Sbjct: 7132534 tgacttccacatcagatcaacccaccggctgaaaga 7132499
>gb|CH401169.1| Oryza sativa (japonica cultivar-group) chromosome 2 scaffold000006 genomic
scaffold, whole genome shotgun sequence
Length = 13452964
Score = 402 bits (203), Expect = e-109
Identities = 417/491 (84%)
Strand = Plus / Minus
Query: 108 gaggagtcctgatcatcagctgtatcgccagtgaggggaccaggaagaagtcctatctta 167
||||| ||||||||||||||||| || || |||||| ||||||||| || | ||| |||
Sbjct: 13100633 gaggactcctgatcatcagctgtgtcaccggtgaggcaaccaggaagtaggcttatttta 13100574
Query: 168 tgcaatcttaaaatacaatctattatgttcctccatccgctgcgtatgtgatcaccataa 227
|||||||||||||| ||||||| |||||||||||| || ||||||||||||||||||| |
Sbjct: 13100573 tgcaatcttaaaatgcaatctactatgttcctccacccactgcgtatgtgatcaccatga 13100514
Query: 228 acagttgctatagtgaaaacagcttctgttgccattctagccttggtatcctccccaaac 287
|||||||||||| |||||||| || |||||||||||||||||||| ||||| || ||
Sbjct: 13100513 gtagttgctatagtaaaaacagcctcggttgccattctagccttggtgtcctcaccgaaa 13100454
Query: 288 gctgttacaggatcgtcaatgtaggaagtggtcaacaaagtggtgaatttagatagtgcc 347
| |||||||||||| | ||| ||||||||| ||| ||| |||||||| ||| ||||||||
Sbjct: 13100453 gttgttacaggatcattaatataggaagtgttcagcaaggtggtgaacttacatagtgcc 13100394
Query: 348 acaacaagatcattcagaacatcaccaagatgatagaatgcagccagtttcgccactgac 407
|||||||||||||||| |||||| |||||||||||||||| |||| |||||||||||
Sbjct: 13100393 acaacaagatcattcaacacatcatcaagatgatagaatgccgccaacttcgccactgat 13100334
Query: 408 agaaagccgtcaatgcatcctgtaagaacctcttcatgctcaacgttatcaaaaaccaca 467
||||| || | ||||||||||||||| | ||||||||||||||| ||||||||||||||
Sbjct: 13100333 agaaaaccattaatgcatcctgtaaggaactcttcatgctcaacattatcaaaaaccact 13100274
Query: 468 gaaacagcagcaactgttggtccggccataacagaaaacatgtcatgatcaagaaatggg 527
|| | ||||||||| |||||||| ||||| | || ||||||||||||||||||||| |||
Sbjct: 13100273 gagatagcagcaaccgttggtccagccatgatagtaaacatgtcatgatcaagaaaaggg 13100214
Query: 528 taagagctacaagcaatatacattgatgnnctctttgaccnnnacannagatnaacccaa 587
| ||| ||||||||| || ||||| ||||||||| ||| |||| ||||||
Sbjct: 13100213 aaggagtcacaagcaatgtatgctgatgtcctctttgacttccacatcagatcaacccac 13100154
Query: 588 cgactgaaaga 598
|| ||||||||
Sbjct: 13100153 cggctgaaaga 13100143
>gb|CM000139.1| Oryza sativa (japonica cultivar-group) chromosome 2, whole genome shotgun
sequence
Length = 36016269
Score = 402 bits (203), Expect = e-109
Identities = 417/491 (84%)
Strand = Plus / Minus
Query: 108 gaggagtcctgatcatcagctgtatcgccagtgaggggaccaggaagaagtcctatctta 167
||||| ||||||||||||||||| || || |||||| ||||||||| || | ||| |||
Sbjct: 13100633 gaggactcctgatcatcagctgtgtcaccggtgaggcaaccaggaagtaggcttatttta 13100574
Query: 168 tgcaatcttaaaatacaatctattatgttcctccatccgctgcgtatgtgatcaccataa 227
|||||||||||||| ||||||| |||||||||||| || ||||||||||||||||||| |
Sbjct: 13100573 tgcaatcttaaaatgcaatctactatgttcctccacccactgcgtatgtgatcaccatga 13100514
Query: 228 acagttgctatagtgaaaacagcttctgttgccattctagccttggtatcctccccaaac 287
|||||||||||| |||||||| || |||||||||||||||||||| ||||| || ||
Sbjct: 13100513 gtagttgctatagtaaaaacagcctcggttgccattctagccttggtgtcctcaccgaaa 13100454
Query: 288 gctgttacaggatcgtcaatgtaggaagtggtcaacaaagtggtgaatttagatagtgcc 347
| |||||||||||| | ||| ||||||||| ||| ||| |||||||| ||| ||||||||
Sbjct: 13100453 gttgttacaggatcattaatataggaagtgttcagcaaggtggtgaacttacatagtgcc 13100394
Query: 348 acaacaagatcattcagaacatcaccaagatgatagaatgcagccagtttcgccactgac 407
|||||||||||||||| |||||| |||||||||||||||| |||| |||||||||||
Sbjct: 13100393 acaacaagatcattcaacacatcatcaagatgatagaatgccgccaacttcgccactgat 13100334
Query: 408 agaaagccgtcaatgcatcctgtaagaacctcttcatgctcaacgttatcaaaaaccaca 467
||||| || | ||||||||||||||| | ||||||||||||||| ||||||||||||||
Sbjct: 13100333 agaaaaccattaatgcatcctgtaaggaactcttcatgctcaacattatcaaaaaccact 13100274
Query: 468 gaaacagcagcaactgttggtccggccataacagaaaacatgtcatgatcaagaaatggg 527
|| | ||||||||| |||||||| ||||| | || ||||||||||||||||||||| |||
Sbjct: 13100273 gagatagcagcaaccgttggtccagccatgatagtaaacatgtcatgatcaagaaaaggg 13100214
Query: 528 taagagctacaagcaatatacattgatgnnctctttgaccnnnacannagatnaacccaa 587
| ||| ||||||||| || ||||| ||||||||| ||| |||| ||||||
Sbjct: 13100213 aaggagtcacaagcaatgtatgctgatgtcctctttgacttccacatcagatcaacccac 13100154
Query: 588 cgactgaaaga 598
|| ||||||||
Sbjct: 13100153 cggctgaaaga 13100143
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
sequence
Length = 35954743
Score = 402 bits (203), Expect = e-109
Identities = 417/491 (84%)
Strand = Plus / Minus
Query: 108 gaggagtcctgatcatcagctgtatcgccagtgaggggaccaggaagaagtcctatctta 167
||||| ||||||||||||||||| || || |||||| ||||||||| || | ||| |||
Sbjct: 13147084 gaggactcctgatcatcagctgtgtcaccggtgaggcaaccaggaagtaggcttatttta 13147025
Query: 168 tgcaatcttaaaatacaatctattatgttcctccatccgctgcgtatgtgatcaccataa 227
|||||||||||||| ||||||| |||||||||||| || ||||||||||||||||||| |
Sbjct: 13147024 tgcaatcttaaaatgcaatctactatgttcctccacccactgcgtatgtgatcaccatga 13146965
Query: 228 acagttgctatagtgaaaacagcttctgttgccattctagccttggtatcctccccaaac 287
|||||||||||| |||||||| || |||||||||||||||||||| ||||| || ||
Sbjct: 13146964 gtagttgctatagtaaaaacagcctcggttgccattctagccttggtgtcctcaccgaaa 13146905
Query: 288 gctgttacaggatcgtcaatgtaggaagtggtcaacaaagtggtgaatttagatagtgcc 347
| |||||||||||| | ||| ||||||||| ||| ||| |||||||| ||| ||||||||
Sbjct: 13146904 gttgttacaggatcattaatataggaagtgttcagcaaggtggtgaacttacatagtgcc 13146845
Query: 348 acaacaagatcattcagaacatcaccaagatgatagaatgcagccagtttcgccactgac 407
|||||||||||||||| |||||| |||||||||||||||| |||| |||||||||||
Sbjct: 13146844 acaacaagatcattcaacacatcatcaagatgatagaatgccgccaacttcgccactgat 13146785
Query: 408 agaaagccgtcaatgcatcctgtaagaacctcttcatgctcaacgttatcaaaaaccaca 467
||||| || | ||||||||||||||| | ||||||||||||||| ||||||||||||||
Sbjct: 13146784 agaaaaccattaatgcatcctgtaaggaactcttcatgctcaacattatcaaaaaccact 13146725
Query: 468 gaaacagcagcaactgttggtccggccataacagaaaacatgtcatgatcaagaaatggg 527
|| | ||||||||| |||||||| ||||| | || ||||||||||||||||||||| |||
Sbjct: 13146724 gagatagcagcaaccgttggtccagccatgatagtaaacatgtcatgatcaagaaaaggg 13146665
Query: 528 taagagctacaagcaatatacattgatgnnctctttgaccnnnacannagatnaacccaa 587
| ||| ||||||||| || ||||| ||||||||| ||| |||| ||||||
Sbjct: 13146664 aaggagtcacaagcaatgtatgctgatgtcctctttgacttccacatcagatcaacccac 13146605
Query: 588 cgactgaaaga 598
|| ||||||||
Sbjct: 13146604 cggctgaaaga 13146594
Score = 48.1 bits (24), Expect = 0.007
Identities = 76/96 (79%)
Strand = Plus / Minus
Query: 503 aaacatgtcatgatcaagaaatgggtaagagctacaagcaatatacattgatgnnctctt 562
||||||||||||||||||||| ||| | ||| ||||||||| || ||||| |||||
Sbjct: 13099642 aaacatgtcatgatcaagaaaagggaaggagtcacaagcaatgtatgctgatgtcctctt 13099583
Query: 563 tgaccnnnacannagatnaacccaacgactgaaaga 598
|||| ||| |||| |||||| || ||||||||
Sbjct: 13099582 tgacttccacatcagatcaacccaccggctgaaaga 13099547
>gb|AQ258518.1|AQ258518 nbxb0020D06f CUGI Rice BAC Library Oryza sativa (japonica
cultivar-group) genomic clone nbxb0020D06f, DNA sequence
Length = 783
Score = 389 bits (196), Expect = e-105
Identities = 418/492 (84%), Gaps = 1/492 (0%)
Strand = Plus / Plus
Query: 108 gaggagtcctgatcatcagctgtatcgc-cagtgaggggaccaggaagaagtcctatctt 166
||||| ||||||||||||||||| || | | |||||| ||||||||| || | ||| ||
Sbjct: 110 gaggactcctgatcatcagctgtgtcactcggtgaggcaaccaggaagtaggcttatttt 169
Query: 167 atgcaatcttaaaatacaatctattatgttcctccatccgctgcgtatgtgatcaccata 226
||||||||||||||| ||||||| |||||||||||| || |||||||||||||||||||
Sbjct: 170 atgcaatcttaaaatgcaatctactatgttcctccacccactgcgtatgtgatcaccatg 229
Query: 227 aacagttgctatagtgaaaacagcttctgttgccattctagccttggtatcctccccaaa 286
| |||||||||||| |||||||| || |||||||||||||||||||| ||||| || ||
Sbjct: 230 agtagttgctatagtaaaaacagcctcggttgccattctagccttggtgtcctcaccgaa 289
Query: 287 cgctgttacaggatcgtcaatgtaggaagtggtcaacaaagtggtgaatttagatagtgc 346
| |||||||||||| | ||| ||||||||| ||| ||| |||||||| ||| |||||||
Sbjct: 290 agttgttacaggatcattaatataggaagtgttcagcaaggtggtgaacttacatagtgc 349
Query: 347 cacaacaagatcattcagaacatcaccaagatgatagaatgcagccagtttcgccactga 406
||||||||||||||||| |||||| |||||||||||||||| |||| |||||||||||
Sbjct: 350 cacaacaagatcattcaacacatcatcaagatgatagaatgccgccaacttcgccactga 409
Query: 407 cagaaagccgtcaatgcatcctgtaagaacctcttcatgctcaacgttatcaaaaaccac 466
||||| || | ||||||||||||||| | ||||||||||||||| ||||||||||||||
Sbjct: 410 tagaaaaccattaatgcatcctgtaaggaactcttcatgctcaacattatcaaaaaccac 469
Query: 467 agaaacagcagcaactgttggtccggccataacagaaaacatgtcatgatcaagaaatgg 526
|| | ||||||||| |||||||| ||||| | || ||||||||||||||||||||| ||
Sbjct: 470 tgagatagcagcaaccgttggtccagccatgatagtaaacatgtcatgatcaagaaaagg 529
Query: 527 gtaagagctacaagcaatatacattgatgnnctctttgaccnnnacannagatnaaccca 586
| | ||| ||||||||| || ||||| |||||||||| ||| |||| ||||||
Sbjct: 530 gaaggagtcacaagcaatgtatgctgatgtnctctttgacttccacatcagatcaaccca 589
Query: 587 acgactgaaaga 598
|| ||||||||
Sbjct: 590 ccggctgaaaga 601
>gb|CB685927.1|CB685927 OSJNEf16M10.f OSJNEf Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEf16M10 5', mRNA sequence
Length = 760
Score = 196 bits (99), Expect = 1e-047
Identities = 192/223 (86%)
Strand = Plus / Minus
Query: 108 gaggagtcctgatcatcagctgtatcgccagtgaggggaccaggaagaagtcctatctta 167
||||| ||||||||||||||||| || || |||||| ||||||||| || | ||| |||
Sbjct: 223 gaggactcctgatcatcagctgtgtcaccggtgaggcaaccaggaagtaggcttatttta 164
Query: 168 tgcaatcttaaaatacaatctattatgttcctccatccgctgcgtatgtgatcaccataa 227
|||||||||||||| ||||||| |||||||||||| || ||||||||||||||||||| |
Sbjct: 163 tgcaatcttaaaatgcaatctactatgttcctccacccactgcgtatgtgatcaccatga 104
Query: 228 acagttgctatagtgaaaacagcttctgttgccattctagccttggtatcctccccaaac 287
|||||||||||| |||||||| || |||||||||||||||||||| ||||| || ||
Sbjct: 103 gtagttgctatagtaaaaacagcctcggttgccattctagccttggtgtcctcaccgaaa 44
Query: 288 gctgttacaggatcgtcaatgtaggaagtggtcaacaaagtgg 330
| |||||||||||| | ||| ||||||||| ||| ||| ||||
Sbjct: 43 gttgttacaggatcattaatataggaagtgttcagcaaggtgg 1
>gb|AACV01006891.1| Oryza sativa (japonica cultivar-group) chromosome 3 Ctg006891, whole
genome shotgun sequence
Length = 79319
Score = 48.1 bits (24), Expect = 0.007
Identities = 76/96 (79%)
Strand = Plus / Minus
Query: 503 aaacatgtcatgatcaagaaatgggtaagagctacaagcaatatacattgatgnnctctt 562
||||||||||||||||||||| ||| | ||| ||||||||| || ||||| |||||
Sbjct: 25250 aaacatgtcatgatcaagaaaagggaaggagtcacaagcaatgtatgctgatgtcctctt 25191
Query: 563 tgaccnnnacannagatnaacccaacgactgaaaga 598
|||| ||| |||| |||||| || ||||||||
Sbjct: 25190 tgacttccacatcagatcaacccaccggctgaaaga 25155
>gb|CH401174.1| Oryza sativa (japonica cultivar-group) chromosome 3 scaffold000011 genomic
scaffold, whole genome shotgun sequence
Length = 12704415
Score = 48.1 bits (24), Expect = 0.007
Identities = 76/96 (79%)
Strand = Plus / Minus
Query: 503 aaacatgtcatgatcaagaaatgggtaagagctacaagcaatatacattgatgnnctctt 562
||||||||||||||||||||| ||| | ||| ||||||||| || ||||| |||||
Sbjct: 3450434 aaacatgtcatgatcaagaaaagggaaggagtcacaagcaatgtatgctgatgtcctctt 3450375
Query: 563 tgaccnnnacannagatnaacccaacgactgaaaga 598
|||| ||| |||| |||||| || ||||||||
Sbjct: 3450374 tgacttccacatcagatcaacccaccggctgaaaga 3450339
>gb|CM000140.1| Oryza sativa (japonica cultivar-group) chromosome 3, whole genome shotgun
sequence
Length = 37803064
Score = 48.1 bits (24), Expect = 0.007
Identities = 76/96 (79%)
Strand = Plus / Minus
Query: 503 aaacatgtcatgatcaagaaatgggtaagagctacaagcaatatacattgatgnnctctt 562
||||||||||||||||||||| ||| | ||| ||||||||| || ||||| |||||
Sbjct: 17501141 aaacatgtcatgatcaagaaaagggaaggagtcacaagcaatgtatgctgatgtcctctt 17501082
Query: 563 tgaccnnnacannagatnaacccaacgactgaaaga 598
|||| ||| |||| |||||| || ||||||||
Sbjct: 17501081 tgacttccacatcagatcaacccaccggctgaaaga 17501046
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 760,998
Number of Sequences: 438736
Number of extensions: 760998
Number of successful extensions: 5211
Number of sequences better than 0.5: 13
Number of HSP's better than 0.5 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 5152
Number of HSP's gapped (non-prelim): 58
length of query: 722
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 701
effective length of database: 2,791,206,460
effective search space: 1956635728460
effective search space used: 1956635728460
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)