BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QCH2g03.yg.2.1
(537 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AY324384.1| Oryza sativa (japonica cultivar-group) callo... 291 2e-076
ref|XM_468556.1| Oryza sativa (japonica cultivar-group), mRNA 291 2e-076
gb|CB675632.1|CB675632 OSJNEe11H21.r OSJNEe Oryza sativa (j... 250 7e-064
ref|NT_107235.1| Oryza sativa (japonica cultivar-group) 141 4e-031
dbj|AP004685.3| Oryza sativa (japonica cultivar-group) geno... 141 4e-031
dbj|AP005750.3| Oryza sativa (japonica cultivar-group) geno... 141 4e-031
gb|AACV01014975.1| Oryza sativa (japonica cultivar-group) c... 141 4e-031
gb|AACV01014976.1| Oryza sativa (japonica cultivar-group) c... 141 4e-031
gb|CH401216.1| Oryza sativa (japonica cultivar-group) chrom... 141 4e-031
gb|CM000143.1| Oryza sativa (japonica cultivar-group) chrom... 141 4e-031
dbj|AP008212.1| Oryza sativa (japonica cultivar-group) geno... 141 4e-031
dbj|AP004082.3| Oryza sativa (japonica cultivar-group) geno... 123 1e-025
dbj|AP005290.2| Oryza sativa (japonica cultivar-group) geno... 123 1e-025
gb|AACV01005686.1| Oryza sativa (japonica cultivar-group) c... 123 1e-025
ref|NT_107182.1| Oryza sativa (japonica cultivar-group) 123 1e-025
gb|CH401170.1| Oryza sativa (japonica cultivar-group) chrom... 123 1e-025
gb|CM000139.1| Oryza sativa (japonica cultivar-group) chrom... 123 1e-025
dbj|AP008208.1| Oryza sativa (japonica cultivar-group) geno... 123 1e-025
gb|AZ047463.1|AZ047463 nbeb0094M21f CUGI Rice BAC Library (... 96 2e-017
gb|AZ126558.1|AZ126558 OSJNBb0078B11r CUGI Rice BAC Library... 92 4e-016
gb|CB639228.1|CB639228 OSJNEa08N01.f OSJNEa Oryza sativa (j... 76 2e-011
gb|AQ870401.1|AQ870401 nbeb0038B12r CUGI Rice BAC Library (... 64 8e-008
dbj|AG207410.1| Oryza sativa (japonica cultivar-group) DNA,... 58 5e-006
dbj|AP003454.1| Oryza sativa (japonica cultivar-group) chro... 58 5e-006
dbj|AK100271.1| Oryza sativa (japonica cultivar-group) cDNA... 58 5e-006
gb|AACV01013162.1| Oryza sativa (japonica cultivar-group) c... 58 5e-006
dbj|AP007226.1| Oryza sativa (japonica cultivar-group) geno... 58 5e-006
dbj|AP007257.2| Oryza sativa (japonica cultivar-group) geno... 58 5e-006
gb|CH401209.1| Oryza sativa (japonica cultivar-group) chrom... 58 5e-006
gb|CB671521.1|CB671521 OSJNEe05C09.f OSJNEe Oryza sativa (j... 46 0.019
gb|CF307470.1|CF307470 HDA1--06-M20.g1 OsHDAC1-overexpressi... 46 0.019
gb|AC118980.2| Oryza sativa (japonica cultivar-group) chrom... 46 0.019
gb|AACV01005773.1| Oryza sativa (japonica cultivar-group) c... 46 0.019
ref|NM_187562.1| Oryza sativa (japonica cultivar-group), p... 46 0.019
ref|NT_107183.1| Oryza sativa (japonica cultivar-group) 46 0.019
gb|CH401173.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.019
gb|CM000140.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.019
dbj|AP008209.1| Oryza sativa (japonica cultivar-group) geno... 46 0.019
gb|DP000009.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.019
dbj|AG022680.1| Oryza sativa (japonica cultivar-group) DNA,... 42 0.30
emb|AL928750.3|CNS08CBN Oryza sativa chromosome 12, . BAC O... 42 0.30
gb|AC104427.2| Oryza sativa (japonica cultivar-group) chrom... 42 0.30
gb|AC144426.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.30
ref|NT_107158.1| Oryza sativa (japonica cultivar-group) 42 0.30
gb|AACV01005795.1| Oryza sativa (japonica cultivar-group) c... 42 0.30
gb|AACV01024137.1| Oryza sativa (japonica cultivar-group) c... 42 0.30
ref|NM_187591.1| Oryza sativa (japonica cultivar-group), p... 42 0.30
dbj|BA000029.3| Oryza sativa (japonica cultivar-group) mito... 42 0.30
gb|CH401272.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.30
gb|CM000149.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.30
dbj|AP008218.1| Oryza sativa (japonica cultivar-group) geno... 42 0.30
gb|DP000011.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.30
>gb|AY324384.1| Oryza sativa (japonica cultivar-group) callose synthase-like
protein mRNA, partial cds
Length = 2727
Score = 291 bits (147), Expect = 2e-076
Identities = 363/439 (82%)
Strand = Plus / Plus
Query: 99 tcaccattaaagactcaatgcaaggctatagccgacatgaagtttacatatgttgtctca 158
||||||||| |||||||||||| |||||||| ||||||||||||||||| ||||| |||
Sbjct: 502 tcaccattactgactcaatgcaaagctatagctgacatgaagtttacatacgttgtatca 561
Query: 159 tgccaactatatggaattcagaagcgttctaatgagccttgcgcacatgatattttgaga 218
||||||| ||| || || ||||| |||||| ||| | | ||||| |||||| | |||
Sbjct: 562 tgccaacaatacggtatccagaaacgttctggtgatcaccgtgcacaagatattcttaga 621
Query: 219 ctaatgacagagtatccatcacttagggtcgcctatattgatgaagttgaagcacccagc 278
|| |||||| |||||||||||| |||| |||||||||||||||||||||| || |||
Sbjct: 622 ctgatgacaacttatccatcacttcgggttgcctatattgatgaagttgaagagccaagc 681
Query: 279 aaagatagaatcaagaagattgaaaaggtttactactcagtgttagtgaaggcttctgtt 338
||||| || | ||||||||| ||||||||||||||||||| ||| |||||||| ||||
Sbjct: 682 aaagacaggaacaagaagatagaaaaggtttactactcagcgttggtgaaggcagctgta 741
Query: 339 acaaaacctaatgagcctggtcagagccttgatcaggtcatctacaagataaaactacca 398
|| || ||| | || |||||||||| |||||||||| ||| |||| ||||| ||||||
Sbjct: 742 accaagcctgacgatcctggtcagaaacttgatcaggacatatacagaataaagctacca 801
Query: 399 ggtaatgccattttagntgaaggaaagccagaaaaccaganccatgcaataatattcacc 458
|||||||| || ||| |||||||||||||||||| |||| |||||| |||||||| ||
Sbjct: 802 ggtaatgcaatgctaggtgaaggaaagccagaaaatcagaaccatgcgataatatttact 861
Query: 459 cganncgantnnntncaaactatagatatgaatcaggagcactatatggaggagncnttg 518
||| || | ||||||||||| ||||||||||| || || ||||||||| | |||
Sbjct: 862 cgaggtgaaggccttcaaactatagacatgaatcaggaacattacatggaggagactttg 921
Query: 519 aaaatgagnaatctgctgc 537
|||||||| ||||||||||
Sbjct: 922 aaaatgagaaatctgctgc 940
Score = 63.9 bits (32), Expect = 8e-008
Identities = 59/68 (86%)
Strand = Plus / Plus
Query: 10 aagctttggagcttcaggcttttcttgatatggccaacaatgatgatcttatgaaaggct 69
||||||||| |||||||||||||||||||||||| | |||| ||||||| | ||||||
Sbjct: 413 aagctttggtgcttcaggcttttcttgatatggctagagatgaagatcttagggaaggct 472
Query: 70 acagagca 77
|||||||
Sbjct: 473 tcagagca 480
>ref|XM_468556.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 5910
Score = 291 bits (147), Expect = 2e-076
Identities = 363/439 (82%)
Strand = Plus / Plus
Query: 99 tcaccattaaagactcaatgcaaggctatagccgacatgaagtttacatatgttgtctca 158
||||||||| |||||||||||| |||||||| ||||||||||||||||| ||||| |||
Sbjct: 3685 tcaccattactgactcaatgcaaagctatagctgacatgaagtttacatacgttgtatca 3744
Query: 159 tgccaactatatggaattcagaagcgttctaatgagccttgcgcacatgatattttgaga 218
||||||| ||| || || ||||| |||||| ||| | | ||||| |||||| | |||
Sbjct: 3745 tgccaacaatacggtatccagaaacgttctggtgatcaccgtgcacaagatattcttaga 3804
Query: 219 ctaatgacagagtatccatcacttagggtcgcctatattgatgaagttgaagcacccagc 278
|| |||||| |||||||||||| |||| |||||||||||||||||||||| || |||
Sbjct: 3805 ctgatgacaacttatccatcacttcgggttgcctatattgatgaagttgaagagccaagc 3864
Query: 279 aaagatagaatcaagaagattgaaaaggtttactactcagtgttagtgaaggcttctgtt 338
||||| || | ||||||||| ||||||||||||||||||| ||| |||||||| ||||
Sbjct: 3865 aaagacaggaacaagaagatagaaaaggtttactactcagcgttggtgaaggcagctgta 3924
Query: 339 acaaaacctaatgagcctggtcagagccttgatcaggtcatctacaagataaaactacca 398
|| || ||| | || |||||||||| |||||||||| ||| |||| ||||| ||||||
Sbjct: 3925 accaagcctgacgatcctggtcagaaacttgatcaggacatatacagaataaagctacca 3984
Query: 399 ggtaatgccattttagntgaaggaaagccagaaaaccaganccatgcaataatattcacc 458
|||||||| || ||| |||||||||||||||||| |||| |||||| |||||||| ||
Sbjct: 3985 ggtaatgcaatgctaggtgaaggaaagccagaaaatcagaaccatgcgataatatttact 4044
Query: 459 cganncgantnnntncaaactatagatatgaatcaggagcactatatggaggagncnttg 518
||| || | ||||||||||| ||||||||||| || || ||||||||| | |||
Sbjct: 4045 cgaggtgaaggccttcaaactatagacatgaatcaggaacattacatggaggagactttg 4104
Query: 519 aaaatgagnaatctgctgc 537
|||||||| ||||||||||
Sbjct: 4105 aaaatgagaaatctgctgc 4123
Score = 63.9 bits (32), Expect = 8e-008
Identities = 59/68 (86%)
Strand = Plus / Plus
Query: 10 aagctttggagcttcaggcttttcttgatatggccaacaatgatgatcttatgaaaggct 69
||||||||| |||||||||||||||||||||||| | |||| ||||||| | ||||||
Sbjct: 3596 aagctttggtgcttcaggcttttcttgatatggctagagatgaagatcttagggaaggct 3655
Query: 70 acagagca 77
|||||||
Sbjct: 3656 tcagagca 3663
>gb|CB675632.1|CB675632 OSJNEe11H21.r OSJNEe Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEe11H21 3', mRNA sequence
Length = 914
Score = 250 bits (126), Expect = 7e-064
Identities = 298/356 (83%)
Strand = Plus / Minus
Query: 99 tcaccattaaagactcaatgcaaggctatagccgacatgaagtttacatatgttgtctca 158
||||||||| |||||||||||| |||||||| ||||||||||||||||| ||||| |||
Sbjct: 389 tcaccattactgactcaatgcaaagctatagctgacatgaagtttacatacgttgtatca 330
Query: 159 tgccaactatatggaattcagaagcgttctaatgagccttgcgcacatgatattttgaga 218
||||||| ||| || || ||||| |||||| ||| | | ||||| |||||| | |||
Sbjct: 329 tgccaacaatacggtatccagaaacgttctggtgatcaccgtgcacaagatattcttaga 270
Query: 219 ctaatgacagagtatccatcacttagggtcgcctatattgatgaagttgaagcacccagc 278
|| |||||| |||||||||||| |||| |||||||||||||||||||||| || |||
Sbjct: 269 ctgatgacaacttatccatcacttcgggttgcctatattgatgaagttgaagagccaagc 210
Query: 279 aaagatagaatcaagaagattgaaaaggtttactactcagtgttagtgaaggcttctgtt 338
||||| || | ||||||||| ||||||||||||||||||| ||| |||||||| ||||
Sbjct: 209 aaagacaggaacaagaagatagaaaaggtttactactcagcgttggtgaaggcagctgta 150
Query: 339 acaaaacctaatgagcctggtcagagccttgatcaggtcatctacaagataaaactacca 398
|| || ||| | || |||||||||| |||||||||| ||| |||| ||||| ||||||
Sbjct: 149 accaagcctgacgatcctggtcagaaacttgatcaggacatatacagaataaagctacca 90
Query: 399 ggtaatgccattttagntgaaggaaagccagaaaaccaganccatgcaataatatt 454
|||||||| || ||| |||||||||||||||||| |||| |||||| ||||||||
Sbjct: 89 ggtaatgcaatgctaggtgaaggaaagccagaaaatcagaaccatgcgataatatt 34
Score = 63.9 bits (32), Expect = 8e-008
Identities = 59/68 (86%)
Strand = Plus / Minus
Query: 10 aagctttggagcttcaggcttttcttgatatggccaacaatgatgatcttatgaaaggct 69
||||||||| |||||||||||||||||||||||| | |||| ||||||| | ||||||
Sbjct: 478 aagctttggtgcttcaggcttttcttgatatggctagagatgaagatcttagggaaggct 419
Query: 70 acagagca 77
|||||||
Sbjct: 418 tcagagca 411
>ref|NT_107235.1| Oryza sativa (japonica cultivar-group)
Length = 369247
Score = 141 bits (71), Expect = 4e-031
Identities = 149/175 (85%)
Strand = Plus / Minus
Query: 54 gatcttatgaaaggctacagagcaatggaagtaatgtctgaggactcaccattaaagact 113
||||||||| |||| |||||||||| ||| | |||||||||||||| | ||| | ||||
Sbjct: 160390 gatcttatggaaggttacagagcaactgaactgatgtctgaggactcgcaattgatgact 160331
Query: 114 caatgcaaggctatagccgacatgaagtttacatatgttgtctcatgccaactatatgga 173
|||||||| |||||||| |||||||| ||||||||||||||||| ||||| | |||||||
Sbjct: 160330 caatgcaaagctatagctgacatgaaatttacatatgttgtctcgtgccagcaatatgga 160271
Query: 174 attcagaagcgttctaatgagccttgcgcacatgatattttgagactaatgacag 228
|| ||||| |||||| ||| | || || |||||||||||||| ||||||||||
Sbjct: 160270 atccagaaacgttctggtgaagcctgtgcgcatgatattttgaggctaatgacag 160216
Score = 123 bits (62), Expect = 1e-025
Identities = 125/146 (85%)
Strand = Plus / Minus
Query: 231 tatccatcacttagggtcgcctatattgatgaagttgaagcacccagcaaagatagaatc 290
|||||||||||| | || || ||||||||||| ||||||||||| ||| ||||||||| |
Sbjct: 159715 tatccatcacttcgagttgcttatattgatgaggttgaagcacctagccaagatagaaac 159656
Query: 291 aagaagattgaaaaggtttactactcagtgttagtgaaggcttctgttacaaaacctaat 350
||||||| ||| || ||||||||||||| || ||||| ||||| |||||||||||||||
Sbjct: 159655 aagaagactgacaaagtttactactcagcattggtgaaagcttccgttacaaaacctaat 159596
Query: 351 gagcctggtcagagccttgatcaggt 376
|| || || || || |||||||||||
Sbjct: 159595 gaaccaggacaaagtcttgatcaggt 159570
Score = 95.6 bits (48), Expect = 2e-017
Identities = 102/123 (82%)
Strand = Plus / Minus
Query: 373 aggtcatctacaagataaaactaccaggtaatgccattttagntgaaggaaagccagaaa 432
||||||| |||||||||||||| ||||||||||| ||||||| ||||||||| |||||||
Sbjct: 158666 aggtcatatacaagataaaacttccaggtaatgctattttaggtgaaggaaaaccagaaa 158607
Query: 433 accaganccatgcaataatattcacccganncgantnnntncaaactatagatatgaatc 492
| |||| |||||||| || || || || || | | |||||||||||||||||||
Sbjct: 158606 atcagaatcatgcaattatttttactcgtggtgaatgcctccaaactatagatatgaatc 158547
Query: 493 agg 495
|||
Sbjct: 158546 agg 158544
Score = 63.9 bits (32), Expect = 8e-008
Identities = 41/45 (91%)
Strand = Plus / Minus
Query: 492 caggagcactatatggaggagncnttgaaaatgagnaatctgctg 536
|||||||| |||||||||||| | ||||||||||| |||||||||
Sbjct: 158465 caggagcattatatggaggaggctttgaaaatgagaaatctgctg 158421
Score = 60.0 bits (30), Expect = 1e-006
Identities = 42/46 (91%)
Strand = Plus / Minus
Query: 1 actatcgaaaagctttggagcttcaggcttttcttgatatggccaa 46
|||| |||||||| ||||||||||||||||| ||||| ||||||||
Sbjct: 160523 actaccgaaaagcgttggagcttcaggctttccttgacatggccaa 160478
>dbj|AP004685.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
clone:P0017G10
Length = 166700
Score = 141 bits (71), Expect = 4e-031
Identities = 149/175 (85%)
Strand = Plus / Minus
Query: 54 gatcttatgaaaggctacagagcaatggaagtaatgtctgaggactcaccattaaagact 113
||||||||| |||| |||||||||| ||| | |||||||||||||| | ||| | ||||
Sbjct: 160390 gatcttatggaaggttacagagcaactgaactgatgtctgaggactcgcaattgatgact 160331
Query: 114 caatgcaaggctatagccgacatgaagtttacatatgttgtctcatgccaactatatgga 173
|||||||| |||||||| |||||||| ||||||||||||||||| ||||| | |||||||
Sbjct: 160330 caatgcaaagctatagctgacatgaaatttacatatgttgtctcgtgccagcaatatgga 160271
Query: 174 attcagaagcgttctaatgagccttgcgcacatgatattttgagactaatgacag 228
|| ||||| |||||| ||| | || || |||||||||||||| ||||||||||
Sbjct: 160270 atccagaaacgttctggtgaagcctgtgcgcatgatattttgaggctaatgacag 160216
Score = 123 bits (62), Expect = 1e-025
Identities = 125/146 (85%)
Strand = Plus / Minus
Query: 231 tatccatcacttagggtcgcctatattgatgaagttgaagcacccagcaaagatagaatc 290
|||||||||||| | || || ||||||||||| ||||||||||| ||| ||||||||| |
Sbjct: 159715 tatccatcacttcgagttgcttatattgatgaggttgaagcacctagccaagatagaaac 159656
Query: 291 aagaagattgaaaaggtttactactcagtgttagtgaaggcttctgttacaaaacctaat 350
||||||| ||| || ||||||||||||| || ||||| ||||| |||||||||||||||
Sbjct: 159655 aagaagactgacaaagtttactactcagcattggtgaaagcttccgttacaaaacctaat 159596
Query: 351 gagcctggtcagagccttgatcaggt 376
|| || || || || |||||||||||
Sbjct: 159595 gaaccaggacaaagtcttgatcaggt 159570
Score = 95.6 bits (48), Expect = 2e-017
Identities = 102/123 (82%)
Strand = Plus / Minus
Query: 373 aggtcatctacaagataaaactaccaggtaatgccattttagntgaaggaaagccagaaa 432
||||||| |||||||||||||| ||||||||||| ||||||| ||||||||| |||||||
Sbjct: 158666 aggtcatatacaagataaaacttccaggtaatgctattttaggtgaaggaaaaccagaaa 158607
Query: 433 accaganccatgcaataatattcacccganncgantnnntncaaactatagatatgaatc 492
| |||| |||||||| || || || || || | | |||||||||||||||||||
Sbjct: 158606 atcagaatcatgcaattatttttactcgtggtgaatgcctccaaactatagatatgaatc 158547
Query: 493 agg 495
|||
Sbjct: 158546 agg 158544
Score = 63.9 bits (32), Expect = 8e-008
Identities = 41/45 (91%)
Strand = Plus / Minus
Query: 492 caggagcactatatggaggagncnttgaaaatgagnaatctgctg 536
|||||||| |||||||||||| | ||||||||||| |||||||||
Sbjct: 158465 caggagcattatatggaggaggctttgaaaatgagaaatctgctg 158421
Score = 60.0 bits (30), Expect = 1e-006
Identities = 42/46 (91%)
Strand = Plus / Minus
Query: 1 actatcgaaaagctttggagcttcaggcttttcttgatatggccaa 46
|||| |||||||| ||||||||||||||||| ||||| ||||||||
Sbjct: 160523 actaccgaaaagcgttggagcttcaggctttccttgacatggccaa 160478
>dbj|AP005750.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
clone:OSJNBa0069C14
Length = 150579
Score = 141 bits (71), Expect = 4e-031
Identities = 149/175 (85%)
Strand = Plus / Minus
Query: 54 gatcttatgaaaggctacagagcaatggaagtaatgtctgaggactcaccattaaagact 113
||||||||| |||| |||||||||| ||| | |||||||||||||| | ||| | ||||
Sbjct: 21592 gatcttatggaaggttacagagcaactgaactgatgtctgaggactcgcaattgatgact 21533
Query: 114 caatgcaaggctatagccgacatgaagtttacatatgttgtctcatgccaactatatgga 173
|||||||| |||||||| |||||||| ||||||||||||||||| ||||| | |||||||
Sbjct: 21532 caatgcaaagctatagctgacatgaaatttacatatgttgtctcgtgccagcaatatgga 21473
Query: 174 attcagaagcgttctaatgagccttgcgcacatgatattttgagactaatgacag 228
|| ||||| |||||| ||| | || || |||||||||||||| ||||||||||
Sbjct: 21472 atccagaaacgttctggtgaagcctgtgcgcatgatattttgaggctaatgacag 21418
Score = 123 bits (62), Expect = 1e-025
Identities = 125/146 (85%)
Strand = Plus / Minus
Query: 231 tatccatcacttagggtcgcctatattgatgaagttgaagcacccagcaaagatagaatc 290
|||||||||||| | || || ||||||||||| ||||||||||| ||| ||||||||| |
Sbjct: 20917 tatccatcacttcgagttgcttatattgatgaggttgaagcacctagccaagatagaaac 20858
Query: 291 aagaagattgaaaaggtttactactcagtgttagtgaaggcttctgttacaaaacctaat 350
||||||| ||| || ||||||||||||| || ||||| ||||| |||||||||||||||
Sbjct: 20857 aagaagactgacaaagtttactactcagcattggtgaaagcttccgttacaaaacctaat 20798
Query: 351 gagcctggtcagagccttgatcaggt 376
|| || || || || |||||||||||
Sbjct: 20797 gaaccaggacaaagtcttgatcaggt 20772
Score = 95.6 bits (48), Expect = 2e-017
Identities = 102/123 (82%)
Strand = Plus / Minus
Query: 373 aggtcatctacaagataaaactaccaggtaatgccattttagntgaaggaaagccagaaa 432
||||||| |||||||||||||| ||||||||||| ||||||| ||||||||| |||||||
Sbjct: 19868 aggtcatatacaagataaaacttccaggtaatgctattttaggtgaaggaaaaccagaaa 19809
Query: 433 accaganccatgcaataatattcacccganncgantnnntncaaactatagatatgaatc 492
| |||| |||||||| || || || || || | | |||||||||||||||||||
Sbjct: 19808 atcagaatcatgcaattatttttactcgtggtgaatgcctccaaactatagatatgaatc 19749
Query: 493 agg 495
|||
Sbjct: 19748 agg 19746
Score = 63.9 bits (32), Expect = 8e-008
Identities = 41/45 (91%)
Strand = Plus / Minus
Query: 492 caggagcactatatggaggagncnttgaaaatgagnaatctgctg 536
|||||||| |||||||||||| | ||||||||||| |||||||||
Sbjct: 19667 caggagcattatatggaggaggctttgaaaatgagaaatctgctg 19623
Score = 60.0 bits (30), Expect = 1e-006
Identities = 42/46 (91%)
Strand = Plus / Minus
Query: 1 actatcgaaaagctttggagcttcaggcttttcttgatatggccaa 46
|||| |||||||| ||||||||||||||||| ||||| ||||||||
Sbjct: 21725 actaccgaaaagcgttggagcttcaggctttccttgacatggccaa 21680
>gb|AACV01014975.1| Oryza sativa (japonica cultivar-group) chromosome 6 Ctg014975,
whole genome shotgun sequence
Length = 9397
Score = 141 bits (71), Expect = 4e-031
Identities = 149/175 (85%)
Strand = Plus / Plus
Query: 54 gatcttatgaaaggctacagagcaatggaagtaatgtctgaggactcaccattaaagact 113
||||||||| |||| |||||||||| ||| | |||||||||||||| | ||| | ||||
Sbjct: 127 gatcttatggaaggttacagagcaactgaactgatgtctgaggactcgcaattgatgact 186
Query: 114 caatgcaaggctatagccgacatgaagtttacatatgttgtctcatgccaactatatgga 173
|||||||| |||||||| |||||||| ||||||||||||||||| ||||| | |||||||
Sbjct: 187 caatgcaaagctatagctgacatgaaatttacatatgttgtctcgtgccagcaatatgga 246
Query: 174 attcagaagcgttctaatgagccttgcgcacatgatattttgagactaatgacag 228
|| ||||| |||||| ||| | || || |||||||||||||| ||||||||||
Sbjct: 247 atccagaaacgttctggtgaagcctgtgcgcatgatattttgaggctaatgacag 301
Score = 123 bits (62), Expect = 1e-025
Identities = 125/146 (85%)
Strand = Plus / Plus
Query: 231 tatccatcacttagggtcgcctatattgatgaagttgaagcacccagcaaagatagaatc 290
|||||||||||| | || || ||||||||||| ||||||||||| ||| ||||||||| |
Sbjct: 802 tatccatcacttcgagttgcttatattgatgaggttgaagcacctagccaagatagaaac 861
Query: 291 aagaagattgaaaaggtttactactcagtgttagtgaaggcttctgttacaaaacctaat 350
||||||| ||| || ||||||||||||| || ||||| ||||| |||||||||||||||
Sbjct: 862 aagaagactgacaaagtttactactcagcattggtgaaagcttccgttacaaaacctaat 921
Query: 351 gagcctggtcagagccttgatcaggt 376
|| || || || || |||||||||||
Sbjct: 922 gaaccaggacaaagtcttgatcaggt 947
Score = 95.6 bits (48), Expect = 2e-017
Identities = 102/123 (82%)
Strand = Plus / Plus
Query: 373 aggtcatctacaagataaaactaccaggtaatgccattttagntgaaggaaagccagaaa 432
||||||| |||||||||||||| ||||||||||| ||||||| ||||||||| |||||||
Sbjct: 1851 aggtcatatacaagataaaacttccaggtaatgctattttaggtgaaggaaaaccagaaa 1910
Query: 433 accaganccatgcaataatattcacccganncgantnnntncaaactatagatatgaatc 492
| |||| |||||||| || || || || || | | |||||||||||||||||||
Sbjct: 1911 atcagaatcatgcaattatttttactcgtggtgaatgcctccaaactatagatatgaatc 1970
Query: 493 agg 495
|||
Sbjct: 1971 agg 1973
Score = 63.9 bits (32), Expect = 8e-008
Identities = 41/45 (91%)
Strand = Plus / Plus
Query: 492 caggagcactatatggaggagncnttgaaaatgagnaatctgctg 536
|||||||| |||||||||||| | ||||||||||| |||||||||
Sbjct: 2052 caggagcattatatggaggaggctttgaaaatgagaaatctgctg 2096
Score = 54.0 bits (27), Expect = 8e-005
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 8 aaaagctttggagcttcaggcttttcttgatatggccaa 46
|||||| ||||||||||||||||| ||||| ||||||||
Sbjct: 1 aaaagcgttggagcttcaggctttccttgacatggccaa 39
>gb|AACV01014976.1| Oryza sativa (japonica cultivar-group) chromosome 6 Ctg014976, whole
genome shotgun sequence
Length = 21689
Score = 141 bits (71), Expect = 4e-031
Identities = 149/175 (85%)
Strand = Plus / Plus
Query: 54 gatcttatgaaaggctacagagcaatggaagtaatgtctgaggactcaccattaaagact 113
||||||||| |||| |||||||||| ||| | |||||||||||||| | ||| | ||||
Sbjct: 20693 gatcttatggaaggttacagagcaactgaactgatgtctgaggactcgcaattgatgact 20752
Query: 114 caatgcaaggctatagccgacatgaagtttacatatgttgtctcatgccaactatatgga 173
|||||||| |||||||| |||||||| ||||||||||||||||| ||||| | |||||||
Sbjct: 20753 caatgcaaagctatagctgacatgaaatttacatatgttgtctcgtgccagcaatatgga 20812
Query: 174 attcagaagcgttctaatgagccttgcgcacatgatattttgagactaatgacag 228
|| ||||| |||||| ||| | || || |||||||||||||| ||||||||||
Sbjct: 20813 atccagaaacgttctggtgaagcctgtgcgcatgatattttgaggctaatgacag 20867
Score = 123 bits (62), Expect = 1e-025
Identities = 125/146 (85%)
Strand = Plus / Plus
Query: 231 tatccatcacttagggtcgcctatattgatgaagttgaagcacccagcaaagatagaatc 290
|||||||||||| | || || ||||||||||| ||||||||||| ||| ||||||||| |
Sbjct: 21368 tatccatcacttcgagttgcttatattgatgaggttgaagcacctagccaagatagaaac 21427
Query: 291 aagaagattgaaaaggtttactactcagtgttagtgaaggcttctgttacaaaacctaat 350
||||||| ||| || ||||||||||||| || ||||| ||||| |||||||||||||||
Sbjct: 21428 aagaagactgacaaagtttactactcagcattggtgaaagcttccgttacaaaacctaat 21487
Query: 351 gagcctggtcagagccttgatcaggt 376
|| || || || || |||||||||||
Sbjct: 21488 gaaccaggacaaagtcttgatcaggt 21513
Score = 60.0 bits (30), Expect = 1e-006
Identities = 42/46 (91%)
Strand = Plus / Plus
Query: 1 actatcgaaaagctttggagcttcaggcttttcttgatatggccaa 46
|||| |||||||| ||||||||||||||||| ||||| ||||||||
Sbjct: 20560 actaccgaaaagcgttggagcttcaggctttccttgacatggccaa 20605
>gb|CH401216.1| Oryza sativa (japonica cultivar-group) chromosome 6 scaffold000053 genomic
scaffold, whole genome shotgun sequence
Length = 12033173
Score = 141 bits (71), Expect = 4e-031
Identities = 149/175 (85%)
Strand = Plus / Minus
Query: 54 gatcttatgaaaggctacagagcaatggaagtaatgtctgaggactcaccattaaagact 113
||||||||| |||| |||||||||| ||| | |||||||||||||| | ||| | ||||
Sbjct: 11856221 gatcttatggaaggttacagagcaactgaactgatgtctgaggactcgcaattgatgact 11856162
Query: 114 caatgcaaggctatagccgacatgaagtttacatatgttgtctcatgccaactatatgga 173
|||||||| |||||||| |||||||| ||||||||||||||||| ||||| | |||||||
Sbjct: 11856161 caatgcaaagctatagctgacatgaaatttacatatgttgtctcgtgccagcaatatgga 11856102
Query: 174 attcagaagcgttctaatgagccttgcgcacatgatattttgagactaatgacag 228
|| ||||| |||||| ||| | || || |||||||||||||| ||||||||||
Sbjct: 11856101 atccagaaacgttctggtgaagcctgtgcgcatgatattttgaggctaatgacag 11856047
Score = 141 bits (71), Expect = 4e-031
Identities = 149/175 (85%)
Strand = Plus / Minus
Query: 54 gatcttatgaaaggctacagagcaatggaagtaatgtctgaggactcaccattaaagact 113
||||||||| |||| |||||||||| ||| | |||||||||||||| | ||| | ||||
Sbjct: 11855048 gatcttatggaaggttacagagcaactgaactgatgtctgaggactcgcaattgatgact 11854989
Query: 114 caatgcaaggctatagccgacatgaagtttacatatgttgtctcatgccaactatatgga 173
|||||||| |||||||| |||||||| ||||||||||||||||| ||||| | |||||||
Sbjct: 11854988 caatgcaaagctatagctgacatgaaatttacatatgttgtctcgtgccagcaatatgga 11854929
Query: 174 attcagaagcgttctaatgagccttgcgcacatgatattttgagactaatgacag 228
|| ||||| |||||| ||| | || || |||||||||||||| ||||||||||
Sbjct: 11854928 atccagaaacgttctggtgaagcctgtgcgcatgatattttgaggctaatgacag 11854874
Score = 123 bits (62), Expect = 1e-025
Identities = 125/146 (85%)
Strand = Plus / Minus
Query: 231 tatccatcacttagggtcgcctatattgatgaagttgaagcacccagcaaagatagaatc 290
|||||||||||| | || || ||||||||||| ||||||||||| ||| ||||||||| |
Sbjct: 11855546 tatccatcacttcgagttgcttatattgatgaggttgaagcacctagccaagatagaaac 11855487
Query: 291 aagaagattgaaaaggtttactactcagtgttagtgaaggcttctgttacaaaacctaat 350
||||||| ||| || ||||||||||||| || ||||| ||||| |||||||||||||||
Sbjct: 11855486 aagaagactgacaaagtttactactcagcattggtgaaagcttccgttacaaaacctaat 11855427
Query: 351 gagcctggtcagagccttgatcaggt 376
|| || || || || |||||||||||
Sbjct: 11855426 gaaccaggacaaagtcttgatcaggt 11855401
Score = 123 bits (62), Expect = 1e-025
Identities = 125/146 (85%)
Strand = Plus / Minus
Query: 231 tatccatcacttagggtcgcctatattgatgaagttgaagcacccagcaaagatagaatc 290
|||||||||||| | || || ||||||||||| ||||||||||| ||| ||||||||| |
Sbjct: 11854373 tatccatcacttcgagttgcttatattgatgaggttgaagcacctagccaagatagaaac 11854314
Query: 291 aagaagattgaaaaggtttactactcagtgttagtgaaggcttctgttacaaaacctaat 350
||||||| ||| || ||||||||||||| || ||||| ||||| |||||||||||||||
Sbjct: 11854313 aagaagactgacaaagtttactactcagcattggtgaaagcttccgttacaaaacctaat 11854254
Query: 351 gagcctggtcagagccttgatcaggt 376
|| || || || || |||||||||||
Sbjct: 11854253 gaaccaggacaaagtcttgatcaggt 11854228
Score = 95.6 bits (48), Expect = 2e-017
Identities = 102/123 (82%)
Strand = Plus / Minus
Query: 373 aggtcatctacaagataaaactaccaggtaatgccattttagntgaaggaaagccagaaa 432
||||||| |||||||||||||| ||||||||||| ||||||| ||||||||| |||||||
Sbjct: 11853324 aggtcatatacaagataaaacttccaggtaatgctattttaggtgaaggaaaaccagaaa 11853265
Query: 433 accaganccatgcaataatattcacccganncgantnnntncaaactatagatatgaatc 492
| |||| |||||||| || || || || || | | |||||||||||||||||||
Sbjct: 11853264 atcagaatcatgcaattatttttactcgtggtgaatgcctccaaactatagatatgaatc 11853205
Query: 493 agg 495
|||
Sbjct: 11853204 agg 11853202
Score = 63.9 bits (32), Expect = 8e-008
Identities = 41/45 (91%)
Strand = Plus / Minus
Query: 492 caggagcactatatggaggagncnttgaaaatgagnaatctgctg 536
|||||||| |||||||||||| | ||||||||||| |||||||||
Sbjct: 11853123 caggagcattatatggaggaggctttgaaaatgagaaatctgctg 11853079
Score = 60.0 bits (30), Expect = 1e-006
Identities = 42/46 (91%)
Strand = Plus / Minus
Query: 1 actatcgaaaagctttggagcttcaggcttttcttgatatggccaa 46
|||| |||||||| ||||||||||||||||| ||||| ||||||||
Sbjct: 11856354 actaccgaaaagcgttggagcttcaggctttccttgacatggccaa 11856309
Score = 54.0 bits (27), Expect = 8e-005
Identities = 36/39 (92%)
Strand = Plus / Minus
Query: 8 aaaagctttggagcttcaggcttttcttgatatggccaa 46
|||||| ||||||||||||||||| ||||| ||||||||
Sbjct: 11855174 aaaagcgttggagcttcaggctttccttgacatggccaa 11855136
>gb|CM000143.1| Oryza sativa (japonica cultivar-group) chromosome 6, whole genome shotgun
sequence
Length = 29740507
Score = 141 bits (71), Expect = 4e-031
Identities = 149/175 (85%)
Strand = Plus / Minus
Query: 54 gatcttatgaaaggctacagagcaatggaagtaatgtctgaggactcaccattaaagact 113
||||||||| |||| |||||||||| ||| | |||||||||||||| | ||| | ||||
Sbjct: 29554958 gatcttatggaaggttacagagcaactgaactgatgtctgaggactcgcaattgatgact 29554899
Query: 114 caatgcaaggctatagccgacatgaagtttacatatgttgtctcatgccaactatatgga 173
|||||||| |||||||| |||||||| ||||||||||||||||| ||||| | |||||||
Sbjct: 29554898 caatgcaaagctatagctgacatgaaatttacatatgttgtctcgtgccagcaatatgga 29554839
Query: 174 attcagaagcgttctaatgagccttgcgcacatgatattttgagactaatgacag 228
|| ||||| |||||| ||| | || || |||||||||||||| ||||||||||
Sbjct: 29554838 atccagaaacgttctggtgaagcctgtgcgcatgatattttgaggctaatgacag 29554784
Score = 141 bits (71), Expect = 4e-031
Identities = 149/175 (85%)
Strand = Plus / Minus
Query: 54 gatcttatgaaaggctacagagcaatggaagtaatgtctgaggactcaccattaaagact 113
||||||||| |||| |||||||||| ||| | |||||||||||||| | ||| | ||||
Sbjct: 29553785 gatcttatggaaggttacagagcaactgaactgatgtctgaggactcgcaattgatgact 29553726
Query: 114 caatgcaaggctatagccgacatgaagtttacatatgttgtctcatgccaactatatgga 173
|||||||| |||||||| |||||||| ||||||||||||||||| ||||| | |||||||
Sbjct: 29553725 caatgcaaagctatagctgacatgaaatttacatatgttgtctcgtgccagcaatatgga 29553666
Query: 174 attcagaagcgttctaatgagccttgcgcacatgatattttgagactaatgacag 228
|| ||||| |||||| ||| | || || |||||||||||||| ||||||||||
Sbjct: 29553665 atccagaaacgttctggtgaagcctgtgcgcatgatattttgaggctaatgacag 29553611
Score = 123 bits (62), Expect = 1e-025
Identities = 125/146 (85%)
Strand = Plus / Minus
Query: 231 tatccatcacttagggtcgcctatattgatgaagttgaagcacccagcaaagatagaatc 290
|||||||||||| | || || ||||||||||| ||||||||||| ||| ||||||||| |
Sbjct: 29554283 tatccatcacttcgagttgcttatattgatgaggttgaagcacctagccaagatagaaac 29554224
Query: 291 aagaagattgaaaaggtttactactcagtgttagtgaaggcttctgttacaaaacctaat 350
||||||| ||| || ||||||||||||| || ||||| ||||| |||||||||||||||
Sbjct: 29554223 aagaagactgacaaagtttactactcagcattggtgaaagcttccgttacaaaacctaat 29554164
Query: 351 gagcctggtcagagccttgatcaggt 376
|| || || || || |||||||||||
Sbjct: 29554163 gaaccaggacaaagtcttgatcaggt 29554138
Score = 123 bits (62), Expect = 1e-025
Identities = 125/146 (85%)
Strand = Plus / Minus
Query: 231 tatccatcacttagggtcgcctatattgatgaagttgaagcacccagcaaagatagaatc 290
|||||||||||| | || || ||||||||||| ||||||||||| ||| ||||||||| |
Sbjct: 29553110 tatccatcacttcgagttgcttatattgatgaggttgaagcacctagccaagatagaaac 29553051
Query: 291 aagaagattgaaaaggtttactactcagtgttagtgaaggcttctgttacaaaacctaat 350
||||||| ||| || ||||||||||||| || ||||| ||||| |||||||||||||||
Sbjct: 29553050 aagaagactgacaaagtttactactcagcattggtgaaagcttccgttacaaaacctaat 29552991
Query: 351 gagcctggtcagagccttgatcaggt 376
|| || || || || |||||||||||
Sbjct: 29552990 gaaccaggacaaagtcttgatcaggt 29552965
Score = 95.6 bits (48), Expect = 2e-017
Identities = 102/123 (82%)
Strand = Plus / Minus
Query: 373 aggtcatctacaagataaaactaccaggtaatgccattttagntgaaggaaagccagaaa 432
||||||| |||||||||||||| ||||||||||| ||||||| ||||||||| |||||||
Sbjct: 29552061 aggtcatatacaagataaaacttccaggtaatgctattttaggtgaaggaaaaccagaaa 29552002
Query: 433 accaganccatgcaataatattcacccganncgantnnntncaaactatagatatgaatc 492
| |||| |||||||| || || || || || | | |||||||||||||||||||
Sbjct: 29552001 atcagaatcatgcaattatttttactcgtggtgaatgcctccaaactatagatatgaatc 29551942
Query: 493 agg 495
|||
Sbjct: 29551941 agg 29551939
Score = 63.9 bits (32), Expect = 8e-008
Identities = 41/45 (91%)
Strand = Plus / Minus
Query: 492 caggagcactatatggaggagncnttgaaaatgagnaatctgctg 536
|||||||| |||||||||||| | ||||||||||| |||||||||
Sbjct: 29551860 caggagcattatatggaggaggctttgaaaatgagaaatctgctg 29551816
Score = 60.0 bits (30), Expect = 1e-006
Identities = 42/46 (91%)
Strand = Plus / Minus
Query: 1 actatcgaaaagctttggagcttcaggcttttcttgatatggccaa 46
|||| |||||||| ||||||||||||||||| ||||| ||||||||
Sbjct: 29555091 actaccgaaaagcgttggagcttcaggctttccttgacatggccaa 29555046
Score = 58.0 bits (29), Expect = 5e-006
Identities = 32/33 (96%)
Strand = Plus / Minus
Query: 121 aggctatagccgacatgaagtttacatatgttg 153
|||||||||| ||||||||||||||||||||||
Sbjct: 3915466 aggctatagcagacatgaagtttacatatgttg 3915434
Score = 54.0 bits (27), Expect = 8e-005
Identities = 36/39 (92%)
Strand = Plus / Minus
Query: 8 aaaagctttggagcttcaggcttttcttgatatggccaa 46
|||||| ||||||||||||||||| ||||| ||||||||
Sbjct: 29553911 aaaagcgttggagcttcaggctttccttgacatggccaa 29553873
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
sequence
Length = 30731886
Score = 141 bits (71), Expect = 4e-031
Identities = 149/175 (85%)
Strand = Plus / Minus
Query: 54 gatcttatgaaaggctacagagcaatggaagtaatgtctgaggactcaccattaaagact 113
||||||||| |||| |||||||||| ||| | |||||||||||||| | ||| | ||||
Sbjct: 30523029 gatcttatggaaggttacagagcaactgaactgatgtctgaggactcgcaattgatgact 30522970
Query: 114 caatgcaaggctatagccgacatgaagtttacatatgttgtctcatgccaactatatgga 173
|||||||| |||||||| |||||||| ||||||||||||||||| ||||| | |||||||
Sbjct: 30522969 caatgcaaagctatagctgacatgaaatttacatatgttgtctcgtgccagcaatatgga 30522910
Query: 174 attcagaagcgttctaatgagccttgcgcacatgatattttgagactaatgacag 228
|| ||||| |||||| ||| | || || |||||||||||||| ||||||||||
Sbjct: 30522909 atccagaaacgttctggtgaagcctgtgcgcatgatattttgaggctaatgacag 30522855
Score = 123 bits (62), Expect = 1e-025
Identities = 125/146 (85%)
Strand = Plus / Minus
Query: 231 tatccatcacttagggtcgcctatattgatgaagttgaagcacccagcaaagatagaatc 290
|||||||||||| | || || ||||||||||| ||||||||||| ||| ||||||||| |
Sbjct: 30522354 tatccatcacttcgagttgcttatattgatgaggttgaagcacctagccaagatagaaac 30522295
Query: 291 aagaagattgaaaaggtttactactcagtgttagtgaaggcttctgttacaaaacctaat 350
||||||| ||| || ||||||||||||| || ||||| ||||| |||||||||||||||
Sbjct: 30522294 aagaagactgacaaagtttactactcagcattggtgaaagcttccgttacaaaacctaat 30522235
Query: 351 gagcctggtcagagccttgatcaggt 376
|| || || || || |||||||||||
Sbjct: 30522234 gaaccaggacaaagtcttgatcaggt 30522209
Score = 95.6 bits (48), Expect = 2e-017
Identities = 102/123 (82%)
Strand = Plus / Minus
Query: 373 aggtcatctacaagataaaactaccaggtaatgccattttagntgaaggaaagccagaaa 432
||||||| |||||||||||||| ||||||||||| ||||||| ||||||||| |||||||
Sbjct: 30521305 aggtcatatacaagataaaacttccaggtaatgctattttaggtgaaggaaaaccagaaa 30521246
Query: 433 accaganccatgcaataatattcacccganncgantnnntncaaactatagatatgaatc 492
| |||| |||||||| || || || || || | | |||||||||||||||||||
Sbjct: 30521245 atcagaatcatgcaattatttttactcgtggtgaatgcctccaaactatagatatgaatc 30521186
Query: 493 agg 495
|||
Sbjct: 30521185 agg 30521183
Score = 63.9 bits (32), Expect = 8e-008
Identities = 41/45 (91%)
Strand = Plus / Minus
Query: 492 caggagcactatatggaggagncnttgaaaatgagnaatctgctg 536
|||||||| |||||||||||| | ||||||||||| |||||||||
Sbjct: 30521104 caggagcattatatggaggaggctttgaaaatgagaaatctgctg 30521060
Score = 60.0 bits (30), Expect = 1e-006
Identities = 42/46 (91%)
Strand = Plus / Minus
Query: 1 actatcgaaaagctttggagcttcaggcttttcttgatatggccaa 46
|||| |||||||| ||||||||||||||||| ||||| ||||||||
Sbjct: 30523162 actaccgaaaagcgttggagcttcaggctttccttgacatggccaa 30523117
Score = 58.0 bits (29), Expect = 5e-006
Identities = 32/33 (96%)
Strand = Plus / Minus
Query: 121 aggctatagccgacatgaagtttacatatgttg 153
|||||||||| ||||||||||||||||||||||
Sbjct: 4082887 aggctatagcagacatgaagtttacatatgttg 4082855
>dbj|AP004082.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
clone:OJ1149_C12
Length = 120743
Score = 123 bits (62), Expect = 1e-025
Identities = 125/146 (85%)
Strand = Plus / Plus
Query: 231 tatccatcacttagggtcgcctatattgatgaagttgaagcacccagcaaagatagaatc 290
|||||||||||| |||| |||||||||||||||||||||| || |||||||| || | |
Sbjct: 89571 tatccatcacttcgggttgcctatattgatgaagttgaagagccaagcaaagacaggaac 89630
Query: 291 aagaagattgaaaaggtttactactcagtgttagtgaaggcttctgttacaaaacctaat 350
|||||||| ||||||||||||||||||| ||| |||||||| |||| || || ||| |
Sbjct: 89631 aagaagatagaaaaggtttactactcagcgttggtgaaggcagctgtaaccaagcctgac 89690
Query: 351 gagcctggtcagagccttgatcaggt 376
|| |||||||||| |||||||||||
Sbjct: 89691 gatcctggtcagaaacttgatcaggt 89716
Score = 91.7 bits (46), Expect = 4e-016
Identities = 79/90 (87%)
Strand = Plus / Plus
Query: 99 tcaccattaaagactcaatgcaaggctatagccgacatgaagtttacatatgttgtctca 158
||||||||| |||||||||||| |||||||| ||||||||||||||||| ||||| |||
Sbjct: 88915 tcaccattactgactcaatgcaaagctatagctgacatgaagtttacatacgttgtatca 88974
Query: 159 tgccaactatatggaattcagaagcgttct 188
||||||| ||| || || ||||| ||||||
Sbjct: 88975 tgccaacaatacggtatccagaaacgttct 89004
Score = 75.8 bits (38), Expect = 2e-011
Identities = 60/68 (88%)
Strand = Plus / Plus
Query: 387 ataaaactaccaggtaatgccattttagntgaaggaaagccagaaaaccaganccatgca 446
||||| |||||||||||||| || ||| |||||||||||||||||| |||| ||||||
Sbjct: 90259 ataaagctaccaggtaatgcaatgctaggtgaaggaaagccagaaaatcagaaccatgcg 90318
Query: 447 ataatatt 454
||||||||
Sbjct: 90319 ataatatt 90326
Score = 60.0 bits (30), Expect = 1e-006
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 10 aagctttggagcttcaggcttttcttgatatggc 43
||||||||| ||||||||||||||||||||||||
Sbjct: 88746 aagctttggtgcttcaggcttttcttgatatggc 88779
Score = 50.1 bits (25), Expect = 0.001
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 504 atggaggagncnttgaaaatgagnaatctgctgc 537
||||||||| | ||||||||||| ||||||||||
Sbjct: 90448 atggaggagactttgaaaatgagaaatctgctgc 90481
>dbj|AP005290.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
clone:OJ1282_E10
Length = 107284
Score = 123 bits (62), Expect = 1e-025
Identities = 125/146 (85%)
Strand = Plus / Plus
Query: 231 tatccatcacttagggtcgcctatattgatgaagttgaagcacccagcaaagatagaatc 290
|||||||||||| |||| |||||||||||||||||||||| || |||||||| || | |
Sbjct: 9402 tatccatcacttcgggttgcctatattgatgaagttgaagagccaagcaaagacaggaac 9461
Query: 291 aagaagattgaaaaggtttactactcagtgttagtgaaggcttctgttacaaaacctaat 350
|||||||| ||||||||||||||||||| ||| |||||||| |||| || || ||| |
Sbjct: 9462 aagaagatagaaaaggtttactactcagcgttggtgaaggcagctgtaaccaagcctgac 9521
Query: 351 gagcctggtcagagccttgatcaggt 376
|| |||||||||| |||||||||||
Sbjct: 9522 gatcctggtcagaaacttgatcaggt 9547
Score = 91.7 bits (46), Expect = 4e-016
Identities = 79/90 (87%)
Strand = Plus / Plus
Query: 99 tcaccattaaagactcaatgcaaggctatagccgacatgaagtttacatatgttgtctca 158
||||||||| |||||||||||| |||||||| ||||||||||||||||| ||||| |||
Sbjct: 8746 tcaccattactgactcaatgcaaagctatagctgacatgaagtttacatacgttgtatca 8805
Query: 159 tgccaactatatggaattcagaagcgttct 188
||||||| ||| || || ||||| ||||||
Sbjct: 8806 tgccaacaatacggtatccagaaacgttct 8835
Score = 75.8 bits (38), Expect = 2e-011
Identities = 60/68 (88%)
Strand = Plus / Plus
Query: 387 ataaaactaccaggtaatgccattttagntgaaggaaagccagaaaaccaganccatgca 446
||||| |||||||||||||| || ||| |||||||||||||||||| |||| ||||||
Sbjct: 10090 ataaagctaccaggtaatgcaatgctaggtgaaggaaagccagaaaatcagaaccatgcg 10149
Query: 447 ataatatt 454
||||||||
Sbjct: 10150 ataatatt 10157
Score = 60.0 bits (30), Expect = 1e-006
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 10 aagctttggagcttcaggcttttcttgatatggc 43
||||||||| ||||||||||||||||||||||||
Sbjct: 8577 aagctttggtgcttcaggcttttcttgatatggc 8610
Score = 50.1 bits (25), Expect = 0.001
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 504 atggaggagncnttgaaaatgagnaatctgctgc 537
||||||||| | ||||||||||| ||||||||||
Sbjct: 10279 atggaggagactttgaaaatgagaaatctgctgc 10312
>gb|AACV01005686.1| Oryza sativa (japonica cultivar-group) chromosome 2 Ctg005686, whole
genome shotgun sequence
Length = 38041
Score = 123 bits (62), Expect = 1e-025
Identities = 125/146 (85%)
Strand = Plus / Plus
Query: 231 tatccatcacttagggtcgcctatattgatgaagttgaagcacccagcaaagatagaatc 290
|||||||||||| |||| |||||||||||||||||||||| || |||||||| || | |
Sbjct: 3926 tatccatcacttcgggttgcctatattgatgaagttgaagagccaagcaaagacaggaac 3985
Query: 291 aagaagattgaaaaggtttactactcagtgttagtgaaggcttctgttacaaaacctaat 350
|||||||| ||||||||||||||||||| ||| |||||||| |||| || || ||| |
Sbjct: 3986 aagaagatagaaaaggtttactactcagcgttggtgaaggcagctgtaaccaagcctgac 4045
Query: 351 gagcctggtcagagccttgatcaggt 376
|| |||||||||| |||||||||||
Sbjct: 4046 gatcctggtcagaaacttgatcaggt 4071
Score = 91.7 bits (46), Expect = 4e-016
Identities = 79/90 (87%)
Strand = Plus / Plus
Query: 99 tcaccattaaagactcaatgcaaggctatagccgacatgaagtttacatatgttgtctca 158
||||||||| |||||||||||| |||||||| ||||||||||||||||| ||||| |||
Sbjct: 3270 tcaccattactgactcaatgcaaagctatagctgacatgaagtttacatacgttgtatca 3329
Query: 159 tgccaactatatggaattcagaagcgttct 188
||||||| ||| || || ||||| ||||||
Sbjct: 3330 tgccaacaatacggtatccagaaacgttct 3359
Score = 75.8 bits (38), Expect = 2e-011
Identities = 60/68 (88%)
Strand = Plus / Plus
Query: 387 ataaaactaccaggtaatgccattttagntgaaggaaagccagaaaaccaganccatgca 446
||||| |||||||||||||| || ||| |||||||||||||||||| |||| ||||||
Sbjct: 4614 ataaagctaccaggtaatgcaatgctaggtgaaggaaagccagaaaatcagaaccatgcg 4673
Query: 447 ataatatt 454
||||||||
Sbjct: 4674 ataatatt 4681
Score = 60.0 bits (30), Expect = 1e-006
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 10 aagctttggagcttcaggcttttcttgatatggc 43
||||||||| ||||||||||||||||||||||||
Sbjct: 3101 aagctttggtgcttcaggcttttcttgatatggc 3134
Score = 50.1 bits (25), Expect = 0.001
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 504 atggaggagncnttgaaaatgagnaatctgctgc 537
||||||||| | ||||||||||| ||||||||||
Sbjct: 4803 atggaggagactttgaaaatgagaaatctgctgc 4836
>ref|NT_107182.1| Oryza sativa (japonica cultivar-group)
Length = 1785023
Score = 123 bits (62), Expect = 1e-025
Identities = 125/146 (85%)
Strand = Plus / Plus
Query: 231 tatccatcacttagggtcgcctatattgatgaagttgaagcacccagcaaagatagaatc 290
|||||||||||| |||| |||||||||||||||||||||| || |||||||| || | |
Sbjct: 1654129 tatccatcacttcgggttgcctatattgatgaagttgaagagccaagcaaagacaggaac 1654188
Query: 291 aagaagattgaaaaggtttactactcagtgttagtgaaggcttctgttacaaaacctaat 350
|||||||| ||||||||||||||||||| ||| |||||||| |||| || || ||| |
Sbjct: 1654189 aagaagatagaaaaggtttactactcagcgttggtgaaggcagctgtaaccaagcctgac 1654248
Query: 351 gagcctggtcagagccttgatcaggt 376
|| |||||||||| |||||||||||
Sbjct: 1654249 gatcctggtcagaaacttgatcaggt 1654274
Score = 91.7 bits (46), Expect = 4e-016
Identities = 79/90 (87%)
Strand = Plus / Plus
Query: 99 tcaccattaaagactcaatgcaaggctatagccgacatgaagtttacatatgttgtctca 158
||||||||| |||||||||||| |||||||| ||||||||||||||||| ||||| |||
Sbjct: 1653473 tcaccattactgactcaatgcaaagctatagctgacatgaagtttacatacgttgtatca 1653532
Query: 159 tgccaactatatggaattcagaagcgttct 188
||||||| ||| || || ||||| ||||||
Sbjct: 1653533 tgccaacaatacggtatccagaaacgttct 1653562
Score = 75.8 bits (38), Expect = 2e-011
Identities = 60/68 (88%)
Strand = Plus / Plus
Query: 387 ataaaactaccaggtaatgccattttagntgaaggaaagccagaaaaccaganccatgca 446
||||| |||||||||||||| || ||| |||||||||||||||||| |||| ||||||
Sbjct: 1654817 ataaagctaccaggtaatgcaatgctaggtgaaggaaagccagaaaatcagaaccatgcg 1654876
Query: 447 ataatatt 454
||||||||
Sbjct: 1654877 ataatatt 1654884
Score = 60.0 bits (30), Expect = 1e-006
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 10 aagctttggagcttcaggcttttcttgatatggc 43
||||||||| ||||||||||||||||||||||||
Sbjct: 1653304 aagctttggtgcttcaggcttttcttgatatggc 1653337
Score = 50.1 bits (25), Expect = 0.001
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 504 atggaggagncnttgaaaatgagnaatctgctgc 537
||||||||| | ||||||||||| ||||||||||
Sbjct: 1655006 atggaggagactttgaaaatgagaaatctgctgc 1655039
>gb|CH401170.1| Oryza sativa (japonica cultivar-group) chromosome 2 scaffold000007 genomic
scaffold, whole genome shotgun sequence
Length = 22563205
Score = 123 bits (62), Expect = 1e-025
Identities = 125/146 (85%)
Strand = Plus / Plus
Query: 231 tatccatcacttagggtcgcctatattgatgaagttgaagcacccagcaaagatagaatc 290
|||||||||||| |||| |||||||||||||||||||||| || |||||||| || | |
Sbjct: 22448035 tatccatcacttcgggttgcctatattgatgaagttgaagagccaagcaaagacaggaac 22448094
Query: 291 aagaagattgaaaaggtttactactcagtgttagtgaaggcttctgttacaaaacctaat 350
|||||||| ||||||||||||||||||| ||| |||||||| |||| || || ||| |
Sbjct: 22448095 aagaagatagaaaaggtttactactcagcgttggtgaaggcagctgtaaccaagcctgac 22448154
Query: 351 gagcctggtcagagccttgatcaggt 376
|| |||||||||| |||||||||||
Sbjct: 22448155 gatcctggtcagaaacttgatcaggt 22448180
Score = 91.7 bits (46), Expect = 4e-016
Identities = 79/90 (87%)
Strand = Plus / Plus
Query: 99 tcaccattaaagactcaatgcaaggctatagccgacatgaagtttacatatgttgtctca 158
||||||||| |||||||||||| |||||||| ||||||||||||||||| ||||| |||
Sbjct: 22447379 tcaccattactgactcaatgcaaagctatagctgacatgaagtttacatacgttgtatca 22447438
Query: 159 tgccaactatatggaattcagaagcgttct 188
||||||| ||| || || ||||| ||||||
Sbjct: 22447439 tgccaacaatacggtatccagaaacgttct 22447468
Score = 75.8 bits (38), Expect = 2e-011
Identities = 60/68 (88%)
Strand = Plus / Plus
Query: 387 ataaaactaccaggtaatgccattttagntgaaggaaagccagaaaaccaganccatgca 446
||||| |||||||||||||| || ||| |||||||||||||||||| |||| ||||||
Sbjct: 22448723 ataaagctaccaggtaatgcaatgctaggtgaaggaaagccagaaaatcagaaccatgcg 22448782
Query: 447 ataatatt 454
||||||||
Sbjct: 22448783 ataatatt 22448790
Score = 60.0 bits (30), Expect = 1e-006
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 10 aagctttggagcttcaggcttttcttgatatggc 43
||||||||| ||||||||||||||||||||||||
Sbjct: 22447210 aagctttggtgcttcaggcttttcttgatatggc 22447243
Score = 50.1 bits (25), Expect = 0.001
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 504 atggaggagncnttgaaaatgagnaatctgctgc 537
||||||||| | ||||||||||| ||||||||||
Sbjct: 22448912 atggaggagactttgaaaatgagaaatctgctgc 22448945
>gb|CM000139.1| Oryza sativa (japonica cultivar-group) chromosome 2, whole genome shotgun
sequence
Length = 36016269
Score = 123 bits (62), Expect = 1e-025
Identities = 125/146 (85%)
Strand = Plus / Plus
Query: 231 tatccatcacttagggtcgcctatattgatgaagttgaagcacccagcaaagatagaatc 290
|||||||||||| |||| |||||||||||||||||||||| || |||||||| || | |
Sbjct: 35901099 tatccatcacttcgggttgcctatattgatgaagttgaagagccaagcaaagacaggaac 35901158
Query: 291 aagaagattgaaaaggtttactactcagtgttagtgaaggcttctgttacaaaacctaat 350
|||||||| ||||||||||||||||||| ||| |||||||| |||| || || ||| |
Sbjct: 35901159 aagaagatagaaaaggtttactactcagcgttggtgaaggcagctgtaaccaagcctgac 35901218
Query: 351 gagcctggtcagagccttgatcaggt 376
|| |||||||||| |||||||||||
Sbjct: 35901219 gatcctggtcagaaacttgatcaggt 35901244
Score = 91.7 bits (46), Expect = 4e-016
Identities = 79/90 (87%)
Strand = Plus / Plus
Query: 99 tcaccattaaagactcaatgcaaggctatagccgacatgaagtttacatatgttgtctca 158
||||||||| |||||||||||| |||||||| ||||||||||||||||| ||||| |||
Sbjct: 35900443 tcaccattactgactcaatgcaaagctatagctgacatgaagtttacatacgttgtatca 35900502
Query: 159 tgccaactatatggaattcagaagcgttct 188
||||||| ||| || || ||||| ||||||
Sbjct: 35900503 tgccaacaatacggtatccagaaacgttct 35900532
Score = 75.8 bits (38), Expect = 2e-011
Identities = 60/68 (88%)
Strand = Plus / Plus
Query: 387 ataaaactaccaggtaatgccattttagntgaaggaaagccagaaaaccaganccatgca 446
||||| |||||||||||||| || ||| |||||||||||||||||| |||| ||||||
Sbjct: 35901787 ataaagctaccaggtaatgcaatgctaggtgaaggaaagccagaaaatcagaaccatgcg 35901846
Query: 447 ataatatt 454
||||||||
Sbjct: 35901847 ataatatt 35901854
Score = 60.0 bits (30), Expect = 1e-006
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 10 aagctttggagcttcaggcttttcttgatatggc 43
||||||||| ||||||||||||||||||||||||
Sbjct: 35900274 aagctttggtgcttcaggcttttcttgatatggc 35900307
Score = 50.1 bits (25), Expect = 0.001
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 504 atggaggagncnttgaaaatgagnaatctgctgc 537
||||||||| | ||||||||||| ||||||||||
Sbjct: 35901976 atggaggagactttgaaaatgagaaatctgctgc 35902009
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
sequence
Length = 35954743
Score = 123 bits (62), Expect = 1e-025
Identities = 125/146 (85%)
Strand = Plus / Plus
Query: 231 tatccatcacttagggtcgcctatattgatgaagttgaagcacccagcaaagatagaatc 290
|||||||||||| |||| |||||||||||||||||||||| || |||||||| || | |
Sbjct: 35818856 tatccatcacttcgggttgcctatattgatgaagttgaagagccaagcaaagacaggaac 35818915
Query: 291 aagaagattgaaaaggtttactactcagtgttagtgaaggcttctgttacaaaacctaat 350
|||||||| ||||||||||||||||||| ||| |||||||| |||| || || ||| |
Sbjct: 35818916 aagaagatagaaaaggtttactactcagcgttggtgaaggcagctgtaaccaagcctgac 35818975
Query: 351 gagcctggtcagagccttgatcaggt 376
|| |||||||||| |||||||||||
Sbjct: 35818976 gatcctggtcagaaacttgatcaggt 35819001
Score = 91.7 bits (46), Expect = 4e-016
Identities = 79/90 (87%)
Strand = Plus / Plus
Query: 99 tcaccattaaagactcaatgcaaggctatagccgacatgaagtttacatatgttgtctca 158
||||||||| |||||||||||| |||||||| ||||||||||||||||| ||||| |||
Sbjct: 35818200 tcaccattactgactcaatgcaaagctatagctgacatgaagtttacatacgttgtatca 35818259
Query: 159 tgccaactatatggaattcagaagcgttct 188
||||||| ||| || || ||||| ||||||
Sbjct: 35818260 tgccaacaatacggtatccagaaacgttct 35818289
Score = 75.8 bits (38), Expect = 2e-011
Identities = 60/68 (88%)
Strand = Plus / Plus
Query: 387 ataaaactaccaggtaatgccattttagntgaaggaaagccagaaaaccaganccatgca 446
||||| |||||||||||||| || ||| |||||||||||||||||| |||| ||||||
Sbjct: 35819544 ataaagctaccaggtaatgcaatgctaggtgaaggaaagccagaaaatcagaaccatgcg 35819603
Query: 447 ataatatt 454
||||||||
Sbjct: 35819604 ataatatt 35819611
Score = 60.0 bits (30), Expect = 1e-006
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 10 aagctttggagcttcaggcttttcttgatatggc 43
||||||||| ||||||||||||||||||||||||
Sbjct: 35818031 aagctttggtgcttcaggcttttcttgatatggc 35818064
Score = 50.1 bits (25), Expect = 0.001
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 504 atggaggagncnttgaaaatgagnaatctgctgc 537
||||||||| | ||||||||||| ||||||||||
Sbjct: 35819733 atggaggagactttgaaaatgagaaatctgctgc 35819766
>gb|AZ047463.1|AZ047463 nbeb0094M21f CUGI Rice BAC Library (EcoRI) Oryza sativa (japonica
cultivar-group) genomic clone OSJNBb0094M21f, DNA
sequence
Length = 430
Score = 95.6 bits (48), Expect = 2e-017
Identities = 102/123 (82%)
Strand = Plus / Plus
Query: 373 aggtcatctacaagataaaactaccaggtaatgccattttagntgaaggaaagccagaaa 432
||||||| |||||||||||||| ||||||||||| ||||||| ||||||||| |||||||
Sbjct: 74 aggtcatatacaagataaaacttccaggtaatgctattttaggtgaaggaaaaccagaaa 133
Query: 433 accaganccatgcaataatattcacccganncgantnnntncaaactatagatatgaatc 492
| |||| |||||||| || || || || || | | |||||||||||||||||||
Sbjct: 134 atcagaatcatgcaattatttttactcgtggtgaatgcctccaaactatagatatgaatc 193
Query: 493 agg 495
|||
Sbjct: 194 agg 196
Score = 63.9 bits (32), Expect = 8e-008
Identities = 41/45 (91%)
Strand = Plus / Plus
Query: 492 caggagcactatatggaggagncnttgaaaatgagnaatctgctg 536
|||||||| |||||||||||| | ||||||||||| |||||||||
Sbjct: 275 caggagcattatatggaggaggctttgaaaatgagaaatctgctg 319
>gb|AZ126558.1|AZ126558 OSJNBb0078B11r CUGI Rice BAC Library (EcoRI) Oryza sativa (japonica
cultivar-group) genomic clone OSJNBb0078B11r, DNA
sequence
Length = 834
Score = 91.7 bits (46), Expect = 4e-016
Identities = 79/90 (87%)
Strand = Plus / Minus
Query: 99 tcaccattaaagactcaatgcaaggctatagccgacatgaagtttacatatgttgtctca 158
||||||||| |||||||||||| |||||||| ||||||||||||||||| ||||| |||
Sbjct: 221 tcaccattactgactcaatgcaaagctatagctgacatgaagtttacatacgttgtatca 162
Query: 159 tgccaactatatggaattcagaagcgttct 188
||||||| ||| || || ||||| ||||||
Sbjct: 161 tgccaacaatacggtatccagaaacgttct 132
Score = 60.0 bits (30), Expect = 1e-006
Identities = 33/34 (97%)
Strand = Plus / Minus
Query: 10 aagctttggagcttcaggcttttcttgatatggc 43
||||||||| ||||||||||||||||||||||||
Sbjct: 390 aagctttggtgcttcaggcttttcttgatatggc 357
>gb|CB639228.1|CB639228 OSJNEa08N01.f OSJNEa Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEa08N01 5', mRNA sequence
Length = 603
Score = 75.8 bits (38), Expect = 2e-011
Identities = 56/62 (90%)
Strand = Plus / Plus
Query: 1 actatcgaaaagctttggagcttcaggcttttcttgatatggccaacaatgatgatctta 60
|||| |||||||| ||||||||||||||||| ||||| |||||||| ||||||||||||
Sbjct: 542 actaccgaaaagcgttggagcttcaggctttccttgacatggccaaagatgatgatctta 601
Query: 61 tg 62
||
Sbjct: 602 tg 603
>gb|AQ870401.1|AQ870401 nbeb0038B12r CUGI Rice BAC Library (EcoRI) Oryza sativa (japonica
cultivar-group) genomic clone nbeb0038B12r, DNA sequence
Length = 384
Score = 63.9 bits (32), Expect = 8e-008
Identities = 79/92 (85%), Gaps = 2/92 (2%)
Strand = Plus / Minus
Query: 99 tcaccattaaagactcaatgcaaggctatagccgacatg-aagtttacat-atgttgtct 156
||||||||| |||||||||||| |||||||| |||||| |||||||||| | ||||| |
Sbjct: 294 tcaccattactgactcaatgcaaagctatagctgacatgaaagtttacatnacgttgtat 235
Query: 157 catgccaactatatggaattcagaagcgttct 188
||||||||| ||| || || ||||| ||||||
Sbjct: 234 catgccaacaatacggtatccagaaacgttct 203
>dbj|AG207410.1| Oryza sativa (japonica cultivar-group) DNA, clone:T11019T, 3'
flanking sequence of Tos17 insertion in rice strain
ND8017, genomic survey sequence
Length = 583
Score = 58.0 bits (29), Expect = 5e-006
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 121 aggctatagccgacatgaagtttacatatgttg 153
|||||||||| ||||||||||||||||||||||
Sbjct: 494 aggctatagcagacatgaagtttacatatgttg 526
>dbj|AP003454.1| Oryza sativa (japonica cultivar-group) chromosome 6 clone P0499E08, ***
SEQUENCING IN PROGRESS ***
Length = 85150
Score = 58.0 bits (29), Expect = 5e-006
Identities = 32/33 (96%)
Strand = Plus / Minus
Query: 121 aggctatagccgacatgaagtttacatatgttg 153
|||||||||| ||||||||||||||||||||||
Sbjct: 43677 aggctatagcagacatgaagtttacatatgttg 43645
>dbj|AK100271.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023069L11, full
insert sequence
Length = 2442
Score = 58.0 bits (29), Expect = 5e-006
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 121 aggctatagccgacatgaagtttacatatgttg 153
|||||||||| ||||||||||||||||||||||
Sbjct: 1189 aggctatagcagacatgaagtttacatatgttg 1221
>gb|AACV01013162.1| Oryza sativa (japonica cultivar-group) chromosome 6 Ctg013162, whole
genome shotgun sequence
Length = 37554
Score = 58.0 bits (29), Expect = 5e-006
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 121 aggctatagccgacatgaagtttacatatgttg 153
|||||||||| ||||||||||||||||||||||
Sbjct: 34181 aggctatagcagacatgaagtttacatatgttg 34213
>dbj|AP007226.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
clone:OSJNBb0036B04
Length = 136159
Score = 58.0 bits (29), Expect = 5e-006
Identities = 32/33 (96%)
Strand = Plus / Minus
Query: 121 aggctatagccgacatgaagtttacatatgttg 153
|||||||||| ||||||||||||||||||||||
Sbjct: 16146 aggctatagcagacatgaagtttacatatgttg 16114
>dbj|AP007257.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
clone:OSJNBb0019L07
Length = 131650
Score = 58.0 bits (29), Expect = 5e-006
Identities = 32/33 (96%)
Strand = Plus / Minus
Query: 121 aggctatagccgacatgaagtttacatatgttg 153
|||||||||| ||||||||||||||||||||||
Sbjct: 126540 aggctatagcagacatgaagtttacatatgttg 126508
>gb|CH401209.1| Oryza sativa (japonica cultivar-group) chromosome 6 scaffold000046 genomic
scaffold, whole genome shotgun sequence
Length = 8607552
Score = 58.0 bits (29), Expect = 5e-006
Identities = 32/33 (96%)
Strand = Plus / Minus
Query: 121 aggctatagccgacatgaagtttacatatgttg 153
|||||||||| ||||||||||||||||||||||
Sbjct: 3915466 aggctatagcagacatgaagtttacatatgttg 3915434
>gb|CB671521.1|CB671521 OSJNEe05C09.f OSJNEe Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEe05C09 5', mRNA sequence
Length = 838
Score = 46.1 bits (23), Expect = 0.019
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 423 aagccagaaaaccaganccatgcaataatattcacccg 460
|||||||||||||| | ||||| ||||||||||||||
Sbjct: 167 aagccagaaaaccaaaatcatgccataatattcacccg 204
>gb|CF307470.1|CF307470 HDA1--06-M20.g1 OsHDAC1-overexpressing transgenic rice lambda phage
cDNA library I (HDA1) Oryza sativa (japonica
cultivar-group) cDNA clone HDA1--06-M20, mRNA sequence
Length = 542
Score = 46.1 bits (23), Expect = 0.019
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 423 aagccagaaaaccaganccatgcaataatattcacccg 460
|||||||||||||| | ||||| ||||||||||||||
Sbjct: 95 aagccagaaaaccaaaatcatgccataatattcacccg 132
>gb|AC118980.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1263H11,
complete sequence
Length = 126827
Score = 46.1 bits (23), Expect = 0.019
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 423 aagccagaaaaccaganccatgcaataatattcacccg 460
|||||||||||||| | ||||| ||||||||||||||
Sbjct: 67208 aagccagaaaaccaaaatcatgccataatattcacccg 67245
>gb|AACV01005773.1| Oryza sativa (japonica cultivar-group) chromosome 3 Ctg005773, whole
genome shotgun sequence
Length = 82514
Score = 46.1 bits (23), Expect = 0.019
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 423 aagccagaaaaccaganccatgcaataatattcacccg 460
|||||||||||||| | ||||| ||||||||||||||
Sbjct: 19235 aagccagaaaaccaaaatcatgccataatattcacccg 19272
>ref|NM_187562.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 6168
Score = 46.1 bits (23), Expect = 0.019
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 423 aagccagaaaaccaganccatgcaataatattcacccg 460
|||||||||||||| | ||||| ||||||||||||||
Sbjct: 2986 aagccagaaaaccaaaatcatgccataatattcacccg 3023
>ref|NT_107183.1| Oryza sativa (japonica cultivar-group)
Length = 1680144
Score = 46.1 bits (23), Expect = 0.019
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 423 aagccagaaaaccaganccatgcaataatattcacccg 460
|||||||||||||| | ||||| ||||||||||||||
Sbjct: 1046991 aagccagaaaaccaaaatcatgccataatattcacccg 1047028
Score = 42.1 bits (21), Expect = 0.30
Identities = 38/44 (86%)
Strand = Plus / Minus
Query: 417 gaaggaaagccagaaaaccaganccatgcaataatattcacccg 460
||||||||||| ||||| || | ||||||||||| ||||||||
Sbjct: 1565435 gaaggaaagcctgaaaatcaaaatcatgcaataatcttcacccg 1565392
>gb|CH401173.1| Oryza sativa (japonica cultivar-group) chromosome 3 scaffold000010 genomic
scaffold, whole genome shotgun sequence
Length = 13858245
Score = 46.1 bits (23), Expect = 0.019
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 423 aagccagaaaaccaganccatgcaataatattcacccg 460
|||||||||||||| | ||||| ||||||||||||||
Sbjct: 1045170 aagccagaaaaccaaaatcatgccataatattcacccg 1045207
Score = 42.1 bits (21), Expect = 0.30
Identities = 38/44 (86%)
Strand = Plus / Minus
Query: 417 gaaggaaagccagaaaaccaganccatgcaataatattcacccg 460
||||||||||| ||||| || | ||||||||||| ||||||||
Sbjct: 1571491 gaaggaaagcctgaaaatcaaaatcatgcaataatcttcacccg 1571448
>gb|CM000140.1| Oryza sativa (japonica cultivar-group) chromosome 3, whole genome shotgun
sequence
Length = 37803064
Score = 46.1 bits (23), Expect = 0.019
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 423 aagccagaaaaccaganccatgcaataatattcacccg 460
|||||||||||||| | ||||| ||||||||||||||
Sbjct: 1237532 aagccagaaaaccaaaatcatgccataatattcacccg 1237569
Score = 42.1 bits (21), Expect = 0.30
Identities = 38/44 (86%)
Strand = Plus / Minus
Query: 417 gaaggaaagccagaaaaccaganccatgcaataatattcacccg 460
||||||||||| ||||| || | ||||||||||| ||||||||
Sbjct: 1763853 gaaggaaagcctgaaaatcaaaatcatgcaataatcttcacccg 1763810
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
sequence
Length = 36192742
Score = 46.1 bits (23), Expect = 0.019
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 423 aagccagaaaaccaganccatgcaataatattcacccg 460
|||||||||||||| | ||||| ||||||||||||||
Sbjct: 1046991 aagccagaaaaccaaaatcatgccataatattcacccg 1047028
Score = 42.1 bits (21), Expect = 0.30
Identities = 38/44 (86%)
Strand = Plus / Minus
Query: 417 gaaggaaagccagaaaaccaganccatgcaataatattcacccg 460
||||||||||| ||||| || | ||||||||||| ||||||||
Sbjct: 1565435 gaaggaaagcctgaaaatcaaaatcatgcaataatcttcacccg 1565392
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
Length = 36102668
Score = 46.1 bits (23), Expect = 0.019
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 423 aagccagaaaaccaganccatgcaataatattcacccg 460
|||||||||||||| | ||||| ||||||||||||||
Sbjct: 1046993 aagccagaaaaccaaaatcatgccataatattcacccg 1047030
Score = 42.1 bits (21), Expect = 0.30
Identities = 38/44 (86%)
Strand = Plus / Minus
Query: 417 gaaggaaagccagaaaaccaganccatgcaataatattcacccg 460
||||||||||| ||||| || | ||||||||||| ||||||||
Sbjct: 1565437 gaaggaaagcctgaaaatcaaaatcatgcaataatcttcacccg 1565394
>dbj|AG022680.1| Oryza sativa (japonica cultivar-group) DNA, clone:T05193T, 3'
flanking sequence of Tos17 insertion in rice strain
NC2543, genomic survey sequence
Length = 486
Score = 42.1 bits (21), Expect = 0.30
Identities = 38/44 (86%)
Strand = Plus / Minus
Query: 417 gaaggaaagccagaaaaccaganccatgcaataatattcacccg 460
||||||||||| ||||| || | ||||||||||| ||||||||
Sbjct: 289 gaaggaaagcctgaaaatcaaaatcatgcaataatcttcacccg 246
>emb|AL928750.3|CNS08CBN Oryza sativa chromosome 12, . BAC OSJNBa0063C08 of library OSJNBa from
chromosome 12 of cultivar Nipponbare of ssp. japonica of
Oryza sativa (rice), complete sequence
Length = 147355
Score = 42.1 bits (21), Expect = 0.30
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 121 aggctatagccgacatgaagtttacatatgttg 153
||||| |||| |||||||| |||||||||||||
Sbjct: 75756 aggctgtagcagacatgaaatttacatatgttg 75788
>gb|AC104427.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1015F07,
complete sequence
Length = 117612
Score = 42.1 bits (21), Expect = 0.30
Identities = 38/44 (86%)
Strand = Plus / Minus
Query: 417 gaaggaaagccagaaaaccaganccatgcaataatattcacccg 460
||||||||||| ||||| || | ||||||||||| ||||||||
Sbjct: 102610 gaaggaaagcctgaaaatcaaaatcatgcaataatcttcacccg 102567
>gb|AC144426.1| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJA1015F07,
complete sequence
Length = 127098
Score = 42.1 bits (21), Expect = 0.30
Identities = 38/44 (86%)
Strand = Plus / Minus
Query: 417 gaaggaaagccagaaaaccaganccatgcaataatattcacccg 460
||||||||||| ||||| || | ||||||||||| ||||||||
Sbjct: 44998 gaaggaaagcctgaaaatcaaaatcatgcaataatcttcacccg 44955
>ref|NT_107158.1| Oryza sativa (japonica cultivar-group)
Length = 828812
Score = 42.1 bits (21), Expect = 0.30
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 121 aggctatagccgacatgaagtttacatatgttg 153
||||| |||| |||||||| |||||||||||||
Sbjct: 71600 aggctgtagcagacatgaaatttacatatgttg 71568
>gb|AACV01005795.1| Oryza sativa (japonica cultivar-group) chromosome 3 Ctg005795, whole
genome shotgun sequence
Length = 23395
Score = 42.1 bits (21), Expect = 0.30
Identities = 38/44 (86%)
Strand = Plus / Plus
Query: 417 gaaggaaagccagaaaaccaganccatgcaataatattcacccg 460
||||||||||| ||||| || | ||||||||||| ||||||||
Sbjct: 18436 gaaggaaagcctgaaaatcaaaatcatgcaataatcttcacccg 18479
>gb|AACV01024137.1| Oryza sativa (japonica cultivar-group) chromosome 12 Ctg024137, whole
genome shotgun sequence
Length = 38604
Score = 42.1 bits (21), Expect = 0.30
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 121 aggctatagccgacatgaagtttacatatgttg 153
||||| |||| |||||||| |||||||||||||
Sbjct: 8543 aggctgtagcagacatgaaatttacatatgttg 8575
>ref|NM_187591.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 4929
Score = 42.1 bits (21), Expect = 0.30
Identities = 38/44 (86%)
Strand = Plus / Plus
Query: 417 gaaggaaagccagaaaaccaganccatgcaataatattcacccg 460
||||||||||| ||||| || | ||||||||||| ||||||||
Sbjct: 3022 gaaggaaagcctgaaaatcaaaatcatgcaataatcttcacccg 3065
>dbj|BA000029.3| Oryza sativa (japonica cultivar-group) mitochondrial DNA, complete genome
Length = 490520
Score = 42.1 bits (21), Expect = 0.30
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 121 aggctatagccgacatgaagtttacatatgttg 153
||||| |||| |||||||| |||||||||||||
Sbjct: 302463 aggctgtagcagacatgaaatttacatatgttg 302431
>gb|CH401272.1| Oryza sativa (japonica cultivar-group) chromosome 12 scaffold000109 genomic
scaffold, whole genome shotgun sequence
Length = 5753019
Score = 42.1 bits (21), Expect = 0.30
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 121 aggctatagccgacatgaagtttacatatgttg 153
||||| |||| |||||||| |||||||||||||
Sbjct: 4601348 aggctgtagcagacatgaaatttacatatgttg 4601316
>gb|CM000149.1| Oryza sativa (japonica cultivar-group) chromosome 12, whole genome shotgun
sequence
Length = 23730396
Score = 42.1 bits (21), Expect = 0.30
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 121 aggctatagccgacatgaagtttacatatgttg 153
||||| |||| |||||||| |||||||||||||
Sbjct: 4601348 aggctgtagcagacatgaaatttacatatgttg 4601316
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 682,643
Number of Sequences: 438736
Number of extensions: 682643
Number of successful extensions: 15175
Number of sequences better than 0.5: 52
Number of HSP's better than 0.5 without gapping: 55
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 14645
Number of HSP's gapped (non-prelim): 520
length of query: 537
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 516
effective length of database: 2,791,206,460
effective search space: 1440262533360
effective search space used: 1440262533360
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)