BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QCH10g11.yg.2.1
(632 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AACV01002091.1| Oryza sativa (japonica cultivar-group) c... 529 e-148
dbj|BA000010.8| Oryza sativa (japonica cultivar-group) geno... 529 e-148
ref|NM_191973.1| Oryza sativa (japonica cultivar-group), p... 529 e-148
ref|NT_079927.2| Oryza sativa (japonica cultivar-group) 529 e-148
dbj|AP003223.3| Oryza sativa (japonica cultivar-group) geno... 529 e-148
dbj|AP003264.3| Oryza sativa (japonica cultivar-group) geno... 529 e-148
gb|CH401168.1| Oryza sativa (japonica cultivar-group) chrom... 529 e-148
gb|CM000138.1| Oryza sativa (japonica cultivar-group) chrom... 529 e-148
dbj|AP008207.1| Oryza sativa (japonica cultivar-group) geno... 529 e-148
dbj|AK099782.1| Oryza sativa (japonica cultivar-group) cDNA... 111 5e-022
dbj|AK120195.1| Oryza sativa (japonica cultivar-group) cDNA... 111 5e-022
dbj|AK120402.1| Oryza sativa (japonica cultivar-group) cDNA... 111 5e-022
gb|AACV01002367.1| Oryza sativa (japonica cultivar-group) c... 111 5e-022
ref|NM_191270.1| Oryza sativa (japonica cultivar-group), p... 111 5e-022
dbj|AP003249.3| Oryza sativa (japonica cultivar-group) geno... 111 5e-022
dbj|AP003268.4| Oryza sativa (japonica cultivar-group) geno... 111 5e-022
gb|AQ288228.1|AQ288228 nbxb0032N19f CUGI Rice BAC Library O... 107 7e-021
gb|CB671521.1|CB671521 OSJNEe05C09.f OSJNEe Oryza sativa (j... 107 7e-021
ref|NM_187562.1| Oryza sativa (japonica cultivar-group), p... 107 7e-021
gb|CF307470.1|CF307470 HDA1--06-M20.g1 OsHDAC1-overexpressi... 100 2e-018
dbj|AK069531.1| Oryza sativa (japonica cultivar-group) cDNA... 100 2e-018
gb|AC118980.2| Oryza sativa (japonica cultivar-group) chrom... 58 6e-006
gb|AACV01005773.1| Oryza sativa (japonica cultivar-group) c... 58 6e-006
ref|NT_107183.1| Oryza sativa (japonica cultivar-group) 58 6e-006
ref|XM_550490.1| Oryza sativa (japonica cultivar-group), mRNA 58 6e-006
gb|CH401173.1| Oryza sativa (japonica cultivar-group) chrom... 58 6e-006
gb|CM000140.1| Oryza sativa (japonica cultivar-group) chrom... 58 6e-006
dbj|AP008209.1| Oryza sativa (japonica cultivar-group) geno... 58 6e-006
gb|DP000009.1| Oryza sativa (japonica cultivar-group) chrom... 58 6e-006
gb|AY324384.1| Oryza sativa (japonica cultivar-group) callo... 54 9e-005
dbj|AP004082.3| Oryza sativa (japonica cultivar-group) geno... 54 9e-005
dbj|AP005290.2| Oryza sativa (japonica cultivar-group) geno... 54 9e-005
gb|AACV01005686.1| Oryza sativa (japonica cultivar-group) c... 54 9e-005
ref|XM_468556.1| Oryza sativa (japonica cultivar-group), mRNA 54 9e-005
ref|NT_107182.1| Oryza sativa (japonica cultivar-group) 54 9e-005
gb|CH401170.1| Oryza sativa (japonica cultivar-group) chrom... 54 9e-005
gb|CM000139.1| Oryza sativa (japonica cultivar-group) chrom... 54 9e-005
dbj|AP008208.1| Oryza sativa (japonica cultivar-group) geno... 54 9e-005
gb|AZ047463.1|AZ047463 nbeb0094M21f CUGI Rice BAC Library (... 52 4e-004
ref|NT_107235.1| Oryza sativa (japonica cultivar-group) 52 4e-004
dbj|AP004685.3| Oryza sativa (japonica cultivar-group) geno... 52 4e-004
dbj|AP005750.3| Oryza sativa (japonica cultivar-group) geno... 52 4e-004
gb|AACV01014975.1| Oryza sativa (japonica cultivar-group) c... 52 4e-004
gb|CH401216.1| Oryza sativa (japonica cultivar-group) chrom... 52 4e-004
gb|CM000143.1| Oryza sativa (japonica cultivar-group) chrom... 52 4e-004
dbj|AP008212.1| Oryza sativa (japonica cultivar-group) geno... 52 4e-004
gb|CG409152.1|CG409152 Ds848 Ds insertion lines Oryza sativ... 50 0.001
gb|CG409286.1|CG409286 Ds982 Ds insertion lines Oryza sativ... 50 0.001
dbj|AG022680.1| Oryza sativa (japonica cultivar-group) DNA,... 50 0.001
gb|CB675632.1|CB675632 OSJNEe11H21.r OSJNEe Oryza sativa (j... 50 0.001
gb|AC104427.2| Oryza sativa (japonica cultivar-group) chrom... 50 0.001
gb|AC144426.1| Oryza sativa (japonica cultivar-group) chrom... 50 0.001
gb|AACV01005795.1| Oryza sativa (japonica cultivar-group) c... 50 0.001
ref|NM_187591.1| Oryza sativa (japonica cultivar-group), p... 50 0.001
dbj|AK100271.1| Oryza sativa (japonica cultivar-group) cDNA... 48 0.006
gb|AACV01012882.1| Oryza sativa (japonica cultivar-group) c... 48 0.006
dbj|AP001552.1| Oryza sativa (japonica cultivar-group) gene... 48 0.006
ref|NM_190295.1| Oryza sativa (japonica cultivar-group), p... 48 0.006
dbj|AP001389.1| Oryza sativa (japonica cultivar-group) geno... 48 0.006
ref|NT_107230.2| Oryza sativa (japonica cultivar-group) 48 0.006
gb|CH401209.1| Oryza sativa (japonica cultivar-group) chrom... 48 0.006
dbj|AP003454.1| Oryza sativa (japonica cultivar-group) chro... 42 0.36
gb|AACV01013162.1| Oryza sativa (japonica cultivar-group) c... 42 0.36
dbj|AP007226.1| Oryza sativa (japonica cultivar-group) geno... 42 0.36
dbj|AP007257.2| Oryza sativa (japonica cultivar-group) geno... 42 0.36
>gb|AACV01002091.1| Oryza sativa (japonica cultivar-group) chromosome 1 Ctg002091, whole
genome shotgun sequence
Length = 57249
Score = 529 bits (267), Expect = e-148
Identities = 429/483 (88%)
Strand = Plus / Minus
Query: 5 ttgaaaccagcaaaaatgtcctcactaatgttgattattcttgatgctttactgatacca 64
||||| |||||||| || |||||||| ||||| || | ||||||||||||||||||||||
Sbjct: 41278 ttgaacccagcaaatatatcctcactgatgtttataactcttgatgctttactgatacca 41219
Query: 65 cctcggcccaaaaaccaaagacgatcaaaaacatctgggtggccataatgcattctgact 124
||||| ||||| ||||||||||||||||| |||||||| |||||||||||||||| |||
Sbjct: 41218 cctcgtcccaagaaccaaagacgatcaaagacatctggatggccataatgcattcggacc 41159
Query: 125 ttaagtggatcagccagaacacgctgccccagagtgacaaaacttgtctcctgggcagac 184
|| |||||||| ||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct: 41158 ttcagtggatctgccagaacacgctgccccagagtaacaaaacttgtttcctgggcagac 41099
Query: 185 atgaaccaagcaagagaagaaactgaacccgtgaagacgtgttcccgaaccccaagaatt 244
||||||||||| |||||||| || ||||| ||||| || ||||||||||||||||| |||
Sbjct: 41098 atgaaccaagctagagaagacacagaaccagtgaaaacatgttcccgaaccccaaggatt 41039
Query: 245 ttaggcttgcgaattccataataacgattgaactcttctagtaggtttctcatctttaga 304
|| ||||||||||||||||||| ||||||||||| ||||| || ||||||||||| |||
Sbjct: 41038 tttggcttgcgaattccataatggcgattgaactcctctagcagatttctcatcttgaga 40979
Query: 305 gcttcttcaaagtagttgtcttggttcatatcaatagtttgaactgcatcgccccttgtg 364
||||||||||| ||||||||||||||||||||||||||||| || ||||| |||||||||
Sbjct: 40978 gcttcttcaaaatagttgtcttggttcatatcaatagtttggacagcatcaccccttgtg 40919
Query: 365 aagatgagtgcatgattctgattttctggctttccttcgccaatcttcaactctccaggc 424
||||||||||||||||| || || ||||| || ||||| |||| ||||| |||||||
Sbjct: 40918 aagatgagtgcatgattttggttctctggtttgccttcaccaagcttcagtggtccaggc 40859
Query: 425 aacttaacccgatagatttcaacctcccgctgcaattgttggtcatatttcacgagaaca 484
|||||||| ||||| || |||||||||||||||| ||| || ||||||||||| || |||
Sbjct: 40858 aacttaacacgataaatctcaacctcccgctgcagttgctgatcatatttcacaaggaca 40799
Query: 485 gag 487
|||
Sbjct: 40798 gag 40796
Score = 107 bits (54), Expect = 7e-021
Identities = 81/91 (89%)
Strand = Plus / Minus
Query: 519 tttcatcaacataagcaacacgtaatgcttcataatttttcattagctccaatatnncaa 578
||||||||||||| |||||||||| |||||||||||| ||||||||||| || || |||
Sbjct: 40764 tttcatcaacataggcaacacgtagtgcttcataattcttcattagctctaaaatctcaa 40705
Query: 579 nagcattggggtcattcttagctttctgctg 609
||||| |||||||||||||||||||||||
Sbjct: 40704 aagcatgagggtcattcttagctttctgctg 40674
>dbj|BA000010.8| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43342410
Score = 529 bits (267), Expect = e-148
Identities = 429/483 (88%)
Strand = Plus / Plus
Query: 5 ttgaaaccagcaaaaatgtcctcactaatgttgattattcttgatgctttactgatacca 64
||||| |||||||| || |||||||| ||||| || | ||||||||||||||||||||||
Sbjct: 27682631 ttgaacccagcaaatatatcctcactgatgtttataactcttgatgctttactgatacca 27682690
Query: 65 cctcggcccaaaaaccaaagacgatcaaaaacatctgggtggccataatgcattctgact 124
||||| ||||| ||||||||||||||||| |||||||| |||||||||||||||| |||
Sbjct: 27682691 cctcgtcccaagaaccaaagacgatcaaagacatctggatggccataatgcattcggacc 27682750
Query: 125 ttaagtggatcagccagaacacgctgccccagagtgacaaaacttgtctcctgggcagac 184
|| |||||||| ||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct: 27682751 ttcagtggatctgccagaacacgctgccccagagtaacaaaacttgtttcctgggcagac 27682810
Query: 185 atgaaccaagcaagagaagaaactgaacccgtgaagacgtgttcccgaaccccaagaatt 244
||||||||||| |||||||| || ||||| ||||| || ||||||||||||||||| |||
Sbjct: 27682811 atgaaccaagctagagaagacacagaaccagtgaaaacatgttcccgaaccccaaggatt 27682870
Query: 245 ttaggcttgcgaattccataataacgattgaactcttctagtaggtttctcatctttaga 304
|| ||||||||||||||||||| ||||||||||| ||||| || ||||||||||| |||
Sbjct: 27682871 tttggcttgcgaattccataatggcgattgaactcctctagcagatttctcatcttgaga 27682930
Query: 305 gcttcttcaaagtagttgtcttggttcatatcaatagtttgaactgcatcgccccttgtg 364
||||||||||| ||||||||||||||||||||||||||||| || ||||| |||||||||
Sbjct: 27682931 gcttcttcaaaatagttgtcttggttcatatcaatagtttggacagcatcaccccttgtg 27682990
Query: 365 aagatgagtgcatgattctgattttctggctttccttcgccaatcttcaactctccaggc 424
||||||||||||||||| || || ||||| || ||||| |||| ||||| |||||||
Sbjct: 27682991 aagatgagtgcatgattttggttctctggtttgccttcaccaagcttcagtggtccaggc 27683050
Query: 425 aacttaacccgatagatttcaacctcccgctgcaattgttggtcatatttcacgagaaca 484
|||||||| ||||| || |||||||||||||||| ||| || ||||||||||| || |||
Sbjct: 27683051 aacttaacacgataaatctcaacctcccgctgcagttgctgatcatatttcacaaggaca 27683110
Query: 485 gag 487
|||
Sbjct: 27683111 gag 27683113
Score = 111 bits (56), Expect = 5e-022
Identities = 167/204 (81%)
Strand = Plus / Plus
Query: 1 acagttgaaaccagcaaaaatgtcctcactaatgttgattattcttgatgctttactgat 60
|||||||||||| ||||| |||||||| || || ||||||| ||| ||||| || || ||
Sbjct: 31718182 acagttgaaacctgcaaatatgtcctcgctgatattgattactctggatgccttgcttat 31718241
Query: 61 accacctcggcccaaaaaccaaagacgatcaaaaacatctgggtggccataatgcattct 120
|||||||||| ||||||||||| |||||||| ||||| || || ||||||||||| |
Sbjct: 31718242 accacctcgggttaaaaaccaaaggcgatcaaatacatcaggatgcccataatgcatccg 31718301
Query: 121 gactttaagtggatcagccagaacacgctgccccagagtgacaaaacttgtctcctgggc 180
|| || | |||| ||| ||||| ||||| || || || ||||| ||||| || || ||
Sbjct: 31718302 aaccttcaacggattagctagaactcgctgtccaagggtaacaaagcttgtttcttgtgc 31718361
Query: 181 agacatgaaccaagcaagagaaga 204
|||||||||||||||||| |||||
Sbjct: 31718362 agacatgaaccaagcaagtgaaga 31718385
Score = 107 bits (54), Expect = 7e-021
Identities = 81/91 (89%)
Strand = Plus / Plus
Query: 519 tttcatcaacataagcaacacgtaatgcttcataatttttcattagctccaatatnncaa 578
||||||||||||| |||||||||| |||||||||||| ||||||||||| || || |||
Sbjct: 27683145 tttcatcaacataggcaacacgtagtgcttcataattcttcattagctctaaaatctcaa 27683204
Query: 579 nagcattggggtcattcttagctttctgctg 609
||||| |||||||||||||||||||||||
Sbjct: 27683205 aagcatgagggtcattcttagctttctgctg 27683235
Score = 63.9 bits (32), Expect = 1e-007
Identities = 98/120 (81%)
Strand = Plus / Plus
Query: 280 ttctagtaggtttctcatctttagagcttcttcaaagtagttgtcttggttcatatcaat 339
|||||||||||| | |||||| || || || ||||| || || || ||||||||||||||
Sbjct: 31718461 ttctagtaggttacgcatcttgagggcctcctcaaaataattatcctggttcatatcaat 31718520
Query: 340 agtttgaactgcatcgccccttgtgaagatgagtgcatgattctgattttctggctttcc 399
||||| || ||||| || | |||||| |||| ||||| ||||||||||| || |||||
Sbjct: 31718521 cgtttgcacagcatcacctcgtgtgaatatgatggcatggttctgattttcaggttttcc 31718580
>ref|NM_191973.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 5310
Score = 529 bits (267), Expect = e-148
Identities = 429/483 (88%)
Strand = Plus / Minus
Query: 5 ttgaaaccagcaaaaatgtcctcactaatgttgattattcttgatgctttactgatacca 64
||||| |||||||| || |||||||| ||||| || | ||||||||||||||||||||||
Sbjct: 3815 ttgaacccagcaaatatatcctcactgatgtttataactcttgatgctttactgatacca 3756
Query: 65 cctcggcccaaaaaccaaagacgatcaaaaacatctgggtggccataatgcattctgact 124
||||| ||||| ||||||||||||||||| |||||||| |||||||||||||||| |||
Sbjct: 3755 cctcgtcccaagaaccaaagacgatcaaagacatctggatggccataatgcattcggacc 3696
Query: 125 ttaagtggatcagccagaacacgctgccccagagtgacaaaacttgtctcctgggcagac 184
|| |||||||| ||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct: 3695 ttcagtggatctgccagaacacgctgccccagagtaacaaaacttgtttcctgggcagac 3636
Query: 185 atgaaccaagcaagagaagaaactgaacccgtgaagacgtgttcccgaaccccaagaatt 244
||||||||||| |||||||| || ||||| ||||| || ||||||||||||||||| |||
Sbjct: 3635 atgaaccaagctagagaagacacagaaccagtgaaaacatgttcccgaaccccaaggatt 3576
Query: 245 ttaggcttgcgaattccataataacgattgaactcttctagtaggtttctcatctttaga 304
|| ||||||||||||||||||| ||||||||||| ||||| || ||||||||||| |||
Sbjct: 3575 tttggcttgcgaattccataatggcgattgaactcctctagcagatttctcatcttgaga 3516
Query: 305 gcttcttcaaagtagttgtcttggttcatatcaatagtttgaactgcatcgccccttgtg 364
||||||||||| ||||||||||||||||||||||||||||| || ||||| |||||||||
Sbjct: 3515 gcttcttcaaaatagttgtcttggttcatatcaatagtttggacagcatcaccccttgtg 3456
Query: 365 aagatgagtgcatgattctgattttctggctttccttcgccaatcttcaactctccaggc 424
||||||||||||||||| || || ||||| || ||||| |||| ||||| |||||||
Sbjct: 3455 aagatgagtgcatgattttggttctctggtttgccttcaccaagcttcagtggtccaggc 3396
Query: 425 aacttaacccgatagatttcaacctcccgctgcaattgttggtcatatttcacgagaaca 484
|||||||| ||||| || |||||||||||||||| ||| || ||||||||||| || |||
Sbjct: 3395 aacttaacacgataaatctcaacctcccgctgcagttgctgatcatatttcacaaggaca 3336
Query: 485 gag 487
|||
Sbjct: 3335 gag 3333
Score = 107 bits (54), Expect = 7e-021
Identities = 81/91 (89%)
Strand = Plus / Minus
Query: 519 tttcatcaacataagcaacacgtaatgcttcataatttttcattagctccaatatnncaa 578
||||||||||||| |||||||||| |||||||||||| ||||||||||| || || |||
Sbjct: 3301 tttcatcaacataggcaacacgtagtgcttcataattcttcattagctctaaaatctcaa 3242
Query: 579 nagcattggggtcattcttagctttctgctg 609
||||| |||||||||||||||||||||||
Sbjct: 3241 aagcatgagggtcattcttagctttctgctg 3211
>ref|NT_079927.2| Oryza sativa (japonica cultivar-group)
Length = 14818989
Score = 529 bits (267), Expect = e-148
Identities = 429/483 (88%)
Strand = Plus / Plus
Query: 5 ttgaaaccagcaaaaatgtcctcactaatgttgattattcttgatgctttactgatacca 64
||||| |||||||| || |||||||| ||||| || | ||||||||||||||||||||||
Sbjct: 2130014 ttgaacccagcaaatatatcctcactgatgtttataactcttgatgctttactgatacca 2130073
Query: 65 cctcggcccaaaaaccaaagacgatcaaaaacatctgggtggccataatgcattctgact 124
||||| ||||| ||||||||||||||||| |||||||| |||||||||||||||| |||
Sbjct: 2130074 cctcgtcccaagaaccaaagacgatcaaagacatctggatggccataatgcattcggacc 2130133
Query: 125 ttaagtggatcagccagaacacgctgccccagagtgacaaaacttgtctcctgggcagac 184
|| |||||||| ||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct: 2130134 ttcagtggatctgccagaacacgctgccccagagtaacaaaacttgtttcctgggcagac 2130193
Query: 185 atgaaccaagcaagagaagaaactgaacccgtgaagacgtgttcccgaaccccaagaatt 244
||||||||||| |||||||| || ||||| ||||| || ||||||||||||||||| |||
Sbjct: 2130194 atgaaccaagctagagaagacacagaaccagtgaaaacatgttcccgaaccccaaggatt 2130253
Query: 245 ttaggcttgcgaattccataataacgattgaactcttctagtaggtttctcatctttaga 304
|| ||||||||||||||||||| ||||||||||| ||||| || ||||||||||| |||
Sbjct: 2130254 tttggcttgcgaattccataatggcgattgaactcctctagcagatttctcatcttgaga 2130313
Query: 305 gcttcttcaaagtagttgtcttggttcatatcaatagtttgaactgcatcgccccttgtg 364
||||||||||| ||||||||||||||||||||||||||||| || ||||| |||||||||
Sbjct: 2130314 gcttcttcaaaatagttgtcttggttcatatcaatagtttggacagcatcaccccttgtg 2130373
Query: 365 aagatgagtgcatgattctgattttctggctttccttcgccaatcttcaactctccaggc 424
||||||||||||||||| || || ||||| || ||||| |||| ||||| |||||||
Sbjct: 2130374 aagatgagtgcatgattttggttctctggtttgccttcaccaagcttcagtggtccaggc 2130433
Query: 425 aacttaacccgatagatttcaacctcccgctgcaattgttggtcatatttcacgagaaca 484
|||||||| ||||| || |||||||||||||||| ||| || ||||||||||| || |||
Sbjct: 2130434 aacttaacacgataaatctcaacctcccgctgcagttgctgatcatatttcacaaggaca 2130493
Query: 485 gag 487
|||
Sbjct: 2130494 gag 2130496
Score = 111 bits (56), Expect = 5e-022
Identities = 167/204 (81%)
Strand = Plus / Plus
Query: 1 acagttgaaaccagcaaaaatgtcctcactaatgttgattattcttgatgctttactgat 60
|||||||||||| ||||| |||||||| || || ||||||| ||| ||||| || || ||
Sbjct: 6165565 acagttgaaacctgcaaatatgtcctcgctgatattgattactctggatgccttgcttat 6165624
Query: 61 accacctcggcccaaaaaccaaagacgatcaaaaacatctgggtggccataatgcattct 120
|||||||||| ||||||||||| |||||||| ||||| || || ||||||||||| |
Sbjct: 6165625 accacctcgggttaaaaaccaaaggcgatcaaatacatcaggatgcccataatgcatccg 6165684
Query: 121 gactttaagtggatcagccagaacacgctgccccagagtgacaaaacttgtctcctgggc 180
|| || | |||| ||| ||||| ||||| || || || ||||| ||||| || || ||
Sbjct: 6165685 aaccttcaacggattagctagaactcgctgtccaagggtaacaaagcttgtttcttgtgc 6165744
Query: 181 agacatgaaccaagcaagagaaga 204
|||||||||||||||||| |||||
Sbjct: 6165745 agacatgaaccaagcaagtgaaga 6165768
Score = 107 bits (54), Expect = 7e-021
Identities = 81/91 (89%)
Strand = Plus / Plus
Query: 519 tttcatcaacataagcaacacgtaatgcttcataatttttcattagctccaatatnncaa 578
||||||||||||| |||||||||| |||||||||||| ||||||||||| || || |||
Sbjct: 2130528 tttcatcaacataggcaacacgtagtgcttcataattcttcattagctctaaaatctcaa 2130587
Query: 579 nagcattggggtcattcttagctttctgctg 609
||||| |||||||||||||||||||||||
Sbjct: 2130588 aagcatgagggtcattcttagctttctgctg 2130618
Score = 63.9 bits (32), Expect = 1e-007
Identities = 98/120 (81%)
Strand = Plus / Plus
Query: 280 ttctagtaggtttctcatctttagagcttcttcaaagtagttgtcttggttcatatcaat 339
|||||||||||| | |||||| || || || ||||| || || || ||||||||||||||
Sbjct: 6165844 ttctagtaggttacgcatcttgagggcctcctcaaaataattatcctggttcatatcaat 6165903
Query: 340 agtttgaactgcatcgccccttgtgaagatgagtgcatgattctgattttctggctttcc 399
||||| || ||||| || | |||||| |||| ||||| ||||||||||| || |||||
Sbjct: 6165904 cgtttgcacagcatcacctcgtgtgaatatgatggcatggttctgattttcaggttttcc 6165963
>dbj|AP003223.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
clone:P0007F06
Length = 150817
Score = 529 bits (267), Expect = e-148
Identities = 429/483 (88%)
Strand = Plus / Plus
Query: 5 ttgaaaccagcaaaaatgtcctcactaatgttgattattcttgatgctttactgatacca 64
||||| |||||||| || |||||||| ||||| || | ||||||||||||||||||||||
Sbjct: 69255 ttgaacccagcaaatatatcctcactgatgtttataactcttgatgctttactgatacca 69314
Query: 65 cctcggcccaaaaaccaaagacgatcaaaaacatctgggtggccataatgcattctgact 124
||||| ||||| ||||||||||||||||| |||||||| |||||||||||||||| |||
Sbjct: 69315 cctcgtcccaagaaccaaagacgatcaaagacatctggatggccataatgcattcggacc 69374
Query: 125 ttaagtggatcagccagaacacgctgccccagagtgacaaaacttgtctcctgggcagac 184
|| |||||||| ||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct: 69375 ttcagtggatctgccagaacacgctgccccagagtaacaaaacttgtttcctgggcagac 69434
Query: 185 atgaaccaagcaagagaagaaactgaacccgtgaagacgtgttcccgaaccccaagaatt 244
||||||||||| |||||||| || ||||| ||||| || ||||||||||||||||| |||
Sbjct: 69435 atgaaccaagctagagaagacacagaaccagtgaaaacatgttcccgaaccccaaggatt 69494
Query: 245 ttaggcttgcgaattccataataacgattgaactcttctagtaggtttctcatctttaga 304
|| ||||||||||||||||||| ||||||||||| ||||| || ||||||||||| |||
Sbjct: 69495 tttggcttgcgaattccataatggcgattgaactcctctagcagatttctcatcttgaga 69554
Query: 305 gcttcttcaaagtagttgtcttggttcatatcaatagtttgaactgcatcgccccttgtg 364
||||||||||| ||||||||||||||||||||||||||||| || ||||| |||||||||
Sbjct: 69555 gcttcttcaaaatagttgtcttggttcatatcaatagtttggacagcatcaccccttgtg 69614
Query: 365 aagatgagtgcatgattctgattttctggctttccttcgccaatcttcaactctccaggc 424
||||||||||||||||| || || ||||| || ||||| |||| ||||| |||||||
Sbjct: 69615 aagatgagtgcatgattttggttctctggtttgccttcaccaagcttcagtggtccaggc 69674
Query: 425 aacttaacccgatagatttcaacctcccgctgcaattgttggtcatatttcacgagaaca 484
|||||||| ||||| || |||||||||||||||| ||| || ||||||||||| || |||
Sbjct: 69675 aacttaacacgataaatctcaacctcccgctgcagttgctgatcatatttcacaaggaca 69734
Query: 485 gag 487
|||
Sbjct: 69735 gag 69737
Score = 107 bits (54), Expect = 7e-021
Identities = 81/91 (89%)
Strand = Plus / Plus
Query: 519 tttcatcaacataagcaacacgtaatgcttcataatttttcattagctccaatatnncaa 578
||||||||||||| |||||||||| |||||||||||| ||||||||||| || || |||
Sbjct: 69769 tttcatcaacataggcaacacgtagtgcttcataattcttcattagctctaaaatctcaa 69828
Query: 579 nagcattggggtcattcttagctttctgctg 609
||||| |||||||||||||||||||||||
Sbjct: 69829 aagcatgagggtcattcttagctttctgctg 69859
>dbj|AP003264.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
clone:P0485G01
Length = 167203
Score = 529 bits (267), Expect = e-148
Identities = 429/483 (88%)
Strand = Plus / Plus
Query: 5 ttgaaaccagcaaaaatgtcctcactaatgttgattattcttgatgctttactgatacca 64
||||| |||||||| || |||||||| ||||| || | ||||||||||||||||||||||
Sbjct: 10527 ttgaacccagcaaatatatcctcactgatgtttataactcttgatgctttactgatacca 10586
Query: 65 cctcggcccaaaaaccaaagacgatcaaaaacatctgggtggccataatgcattctgact 124
||||| ||||| ||||||||||||||||| |||||||| |||||||||||||||| |||
Sbjct: 10587 cctcgtcccaagaaccaaagacgatcaaagacatctggatggccataatgcattcggacc 10646
Query: 125 ttaagtggatcagccagaacacgctgccccagagtgacaaaacttgtctcctgggcagac 184
|| |||||||| ||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct: 10647 ttcagtggatctgccagaacacgctgccccagagtaacaaaacttgtttcctgggcagac 10706
Query: 185 atgaaccaagcaagagaagaaactgaacccgtgaagacgtgttcccgaaccccaagaatt 244
||||||||||| |||||||| || ||||| ||||| || ||||||||||||||||| |||
Sbjct: 10707 atgaaccaagctagagaagacacagaaccagtgaaaacatgttcccgaaccccaaggatt 10766
Query: 245 ttaggcttgcgaattccataataacgattgaactcttctagtaggtttctcatctttaga 304
|| ||||||||||||||||||| ||||||||||| ||||| || ||||||||||| |||
Sbjct: 10767 tttggcttgcgaattccataatggcgattgaactcctctagcagatttctcatcttgaga 10826
Query: 305 gcttcttcaaagtagttgtcttggttcatatcaatagtttgaactgcatcgccccttgtg 364
||||||||||| ||||||||||||||||||||||||||||| || ||||| |||||||||
Sbjct: 10827 gcttcttcaaaatagttgtcttggttcatatcaatagtttggacagcatcaccccttgtg 10886
Query: 365 aagatgagtgcatgattctgattttctggctttccttcgccaatcttcaactctccaggc 424
||||||||||||||||| || || ||||| || ||||| |||| ||||| |||||||
Sbjct: 10887 aagatgagtgcatgattttggttctctggtttgccttcaccaagcttcagtggtccaggc 10946
Query: 425 aacttaacccgatagatttcaacctcccgctgcaattgttggtcatatttcacgagaaca 484
|||||||| ||||| || |||||||||||||||| ||| || ||||||||||| || |||
Sbjct: 10947 aacttaacacgataaatctcaacctcccgctgcagttgctgatcatatttcacaaggaca 11006
Query: 485 gag 487
|||
Sbjct: 11007 gag 11009
Score = 107 bits (54), Expect = 7e-021
Identities = 81/91 (89%)
Strand = Plus / Plus
Query: 519 tttcatcaacataagcaacacgtaatgcttcataatttttcattagctccaatatnncaa 578
||||||||||||| |||||||||| |||||||||||| ||||||||||| || || |||
Sbjct: 11041 tttcatcaacataggcaacacgtagtgcttcataattcttcattagctctaaaatctcaa 11100
Query: 579 nagcattggggtcattcttagctttctgctg 609
||||| |||||||||||||||||||||||
Sbjct: 11101 aagcatgagggtcattcttagctttctgctg 11131
>gb|CH401168.1| Oryza sativa (japonica cultivar-group) chromosome 1 scaffold000005 genomic
scaffold, whole genome shotgun sequence
Length = 17394610
Score = 529 bits (267), Expect = e-148
Identities = 429/483 (88%)
Strand = Plus / Plus
Query: 5 ttgaaaccagcaaaaatgtcctcactaatgttgattattcttgatgctttactgatacca 64
||||| |||||||| || |||||||| ||||| || | ||||||||||||||||||||||
Sbjct: 2070465 ttgaacccagcaaatatatcctcactgatgtttataactcttgatgctttactgatacca 2070524
Query: 65 cctcggcccaaaaaccaaagacgatcaaaaacatctgggtggccataatgcattctgact 124
||||| ||||| ||||||||||||||||| |||||||| |||||||||||||||| |||
Sbjct: 2070525 cctcgtcccaagaaccaaagacgatcaaagacatctggatggccataatgcattcggacc 2070584
Query: 125 ttaagtggatcagccagaacacgctgccccagagtgacaaaacttgtctcctgggcagac 184
|| |||||||| ||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct: 2070585 ttcagtggatctgccagaacacgctgccccagagtaacaaaacttgtttcctgggcagac 2070644
Query: 185 atgaaccaagcaagagaagaaactgaacccgtgaagacgtgttcccgaaccccaagaatt 244
||||||||||| |||||||| || ||||| ||||| || ||||||||||||||||| |||
Sbjct: 2070645 atgaaccaagctagagaagacacagaaccagtgaaaacatgttcccgaaccccaaggatt 2070704
Query: 245 ttaggcttgcgaattccataataacgattgaactcttctagtaggtttctcatctttaga 304
|| ||||||||||||||||||| ||||||||||| ||||| || ||||||||||| |||
Sbjct: 2070705 tttggcttgcgaattccataatggcgattgaactcctctagcagatttctcatcttgaga 2070764
Query: 305 gcttcttcaaagtagttgtcttggttcatatcaatagtttgaactgcatcgccccttgtg 364
||||||||||| ||||||||||||||||||||||||||||| || ||||| |||||||||
Sbjct: 2070765 gcttcttcaaaatagttgtcttggttcatatcaatagtttggacagcatcaccccttgtg 2070824
Query: 365 aagatgagtgcatgattctgattttctggctttccttcgccaatcttcaactctccaggc 424
||||||||||||||||| || || ||||| || ||||| |||| ||||| |||||||
Sbjct: 2070825 aagatgagtgcatgattttggttctctggtttgccttcaccaagcttcagtggtccaggc 2070884
Query: 425 aacttaacccgatagatttcaacctcccgctgcaattgttggtcatatttcacgagaaca 484
|||||||| ||||| || |||||||||||||||| ||| || ||||||||||| || |||
Sbjct: 2070885 aacttaacacgataaatctcaacctcccgctgcagttgctgatcatatttcacaaggaca 2070944
Query: 485 gag 487
|||
Sbjct: 2070945 gag 2070947
Score = 111 bits (56), Expect = 5e-022
Identities = 167/204 (81%)
Strand = Plus / Plus
Query: 1 acagttgaaaccagcaaaaatgtcctcactaatgttgattattcttgatgctttactgat 60
|||||||||||| ||||| |||||||| || || ||||||| ||| ||||| || || ||
Sbjct: 6068208 acagttgaaacctgcaaatatgtcctcgctgatattgattactctggatgccttgcttat 6068267
Query: 61 accacctcggcccaaaaaccaaagacgatcaaaaacatctgggtggccataatgcattct 120
|||||||||| ||||||||||| |||||||| ||||| || || ||||||||||| |
Sbjct: 6068268 accacctcgggttaaaaaccaaaggcgatcaaatacatcaggatgcccataatgcatccg 6068327
Query: 121 gactttaagtggatcagccagaacacgctgccccagagtgacaaaacttgtctcctgggc 180
|| || | |||| ||| ||||| ||||| || || || ||||| ||||| || || ||
Sbjct: 6068328 aaccttcaacggattagctagaactcgctgtccaagggtaacaaagcttgtttcttgtgc 6068387
Query: 181 agacatgaaccaagcaagagaaga 204
|||||||||||||||||| |||||
Sbjct: 6068388 agacatgaaccaagcaagtgaaga 6068411
Score = 107 bits (54), Expect = 7e-021
Identities = 81/91 (89%)
Strand = Plus / Plus
Query: 519 tttcatcaacataagcaacacgtaatgcttcataatttttcattagctccaatatnncaa 578
||||||||||||| |||||||||| |||||||||||| ||||||||||| || || |||
Sbjct: 2070979 tttcatcaacataggcaacacgtagtgcttcataattcttcattagctctaaaatctcaa 2071038
Query: 579 nagcattggggtcattcttagctttctgctg 609
||||| |||||||||||||||||||||||
Sbjct: 2071039 aagcatgagggtcattcttagctttctgctg 2071069
Score = 63.9 bits (32), Expect = 1e-007
Identities = 98/120 (81%)
Strand = Plus / Plus
Query: 280 ttctagtaggtttctcatctttagagcttcttcaaagtagttgtcttggttcatatcaat 339
|||||||||||| | |||||| || || || ||||| || || || ||||||||||||||
Sbjct: 6068487 ttctagtaggttacgcatcttgagggcctcctcaaaataattatcctggttcatatcaat 6068546
Query: 340 agtttgaactgcatcgccccttgtgaagatgagtgcatgattctgattttctggctttcc 399
||||| || ||||| || | |||||| |||| ||||| ||||||||||| || |||||
Sbjct: 6068547 cgtttgcacagcatcacctcgtgtgaatatgatggcatggttctgattttcaggttttcc 6068606
>gb|CM000138.1| Oryza sativa (japonica cultivar-group) chromosome 1, whole genome shotgun
sequence
Length = 42596331
Score = 529 bits (267), Expect = e-148
Identities = 429/483 (88%)
Strand = Plus / Plus
Query: 5 ttgaaaccagcaaaaatgtcctcactaatgttgattattcttgatgctttactgatacca 64
||||| |||||||| || |||||||| ||||| || | ||||||||||||||||||||||
Sbjct: 27272186 ttgaacccagcaaatatatcctcactgatgtttataactcttgatgctttactgatacca 27272245
Query: 65 cctcggcccaaaaaccaaagacgatcaaaaacatctgggtggccataatgcattctgact 124
||||| ||||| ||||||||||||||||| |||||||| |||||||||||||||| |||
Sbjct: 27272246 cctcgtcccaagaaccaaagacgatcaaagacatctggatggccataatgcattcggacc 27272305
Query: 125 ttaagtggatcagccagaacacgctgccccagagtgacaaaacttgtctcctgggcagac 184
|| |||||||| ||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct: 27272306 ttcagtggatctgccagaacacgctgccccagagtaacaaaacttgtttcctgggcagac 27272365
Query: 185 atgaaccaagcaagagaagaaactgaacccgtgaagacgtgttcccgaaccccaagaatt 244
||||||||||| |||||||| || ||||| ||||| || ||||||||||||||||| |||
Sbjct: 27272366 atgaaccaagctagagaagacacagaaccagtgaaaacatgttcccgaaccccaaggatt 27272425
Query: 245 ttaggcttgcgaattccataataacgattgaactcttctagtaggtttctcatctttaga 304
|| ||||||||||||||||||| ||||||||||| ||||| || ||||||||||| |||
Sbjct: 27272426 tttggcttgcgaattccataatggcgattgaactcctctagcagatttctcatcttgaga 27272485
Query: 305 gcttcttcaaagtagttgtcttggttcatatcaatagtttgaactgcatcgccccttgtg 364
||||||||||| ||||||||||||||||||||||||||||| || ||||| |||||||||
Sbjct: 27272486 gcttcttcaaaatagttgtcttggttcatatcaatagtttggacagcatcaccccttgtg 27272545
Query: 365 aagatgagtgcatgattctgattttctggctttccttcgccaatcttcaactctccaggc 424
||||||||||||||||| || || ||||| || ||||| |||| ||||| |||||||
Sbjct: 27272546 aagatgagtgcatgattttggttctctggtttgccttcaccaagcttcagtggtccaggc 27272605
Query: 425 aacttaacccgatagatttcaacctcccgctgcaattgttggtcatatttcacgagaaca 484
|||||||| ||||| || |||||||||||||||| ||| || ||||||||||| || |||
Sbjct: 27272606 aacttaacacgataaatctcaacctcccgctgcagttgctgatcatatttcacaaggaca 27272665
Query: 485 gag 487
|||
Sbjct: 27272666 gag 27272668
Score = 111 bits (56), Expect = 5e-022
Identities = 167/204 (81%)
Strand = Plus / Plus
Query: 1 acagttgaaaccagcaaaaatgtcctcactaatgttgattattcttgatgctttactgat 60
|||||||||||| ||||| |||||||| || || ||||||| ||| ||||| || || ||
Sbjct: 31269929 acagttgaaacctgcaaatatgtcctcgctgatattgattactctggatgccttgcttat 31269988
Query: 61 accacctcggcccaaaaaccaaagacgatcaaaaacatctgggtggccataatgcattct 120
|||||||||| ||||||||||| |||||||| ||||| || || ||||||||||| |
Sbjct: 31269989 accacctcgggttaaaaaccaaaggcgatcaaatacatcaggatgcccataatgcatccg 31270048
Query: 121 gactttaagtggatcagccagaacacgctgccccagagtgacaaaacttgtctcctgggc 180
|| || | |||| ||| ||||| ||||| || || || ||||| ||||| || || ||
Sbjct: 31270049 aaccttcaacggattagctagaactcgctgtccaagggtaacaaagcttgtttcttgtgc 31270108
Query: 181 agacatgaaccaagcaagagaaga 204
|||||||||||||||||| |||||
Sbjct: 31270109 agacatgaaccaagcaagtgaaga 31270132
Score = 107 bits (54), Expect = 7e-021
Identities = 81/91 (89%)
Strand = Plus / Plus
Query: 519 tttcatcaacataagcaacacgtaatgcttcataatttttcattagctccaatatnncaa 578
||||||||||||| |||||||||| |||||||||||| ||||||||||| || || |||
Sbjct: 27272700 tttcatcaacataggcaacacgtagtgcttcataattcttcattagctctaaaatctcaa 27272759
Query: 579 nagcattggggtcattcttagctttctgctg 609
||||| |||||||||||||||||||||||
Sbjct: 27272760 aagcatgagggtcattcttagctttctgctg 27272790
Score = 63.9 bits (32), Expect = 1e-007
Identities = 98/120 (81%)
Strand = Plus / Plus
Query: 280 ttctagtaggtttctcatctttagagcttcttcaaagtagttgtcttggttcatatcaat 339
|||||||||||| | |||||| || || || ||||| || || || ||||||||||||||
Sbjct: 31270208 ttctagtaggttacgcatcttgagggcctcctcaaaataattatcctggttcatatcaat 31270267
Query: 340 agtttgaactgcatcgccccttgtgaagatgagtgcatgattctgattttctggctttcc 399
||||| || ||||| || | |||||| |||| ||||| ||||||||||| || |||||
Sbjct: 31270268 cgtttgcacagcatcacctcgtgtgaatatgatggcatggttctgattttcaggttttcc 31270327
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43261740
Score = 529 bits (267), Expect = e-148
Identities = 429/483 (88%)
Strand = Plus / Plus
Query: 5 ttgaaaccagcaaaaatgtcctcactaatgttgattattcttgatgctttactgatacca 64
||||| |||||||| || |||||||| ||||| || | ||||||||||||||||||||||
Sbjct: 27601961 ttgaacccagcaaatatatcctcactgatgtttataactcttgatgctttactgatacca 27602020
Query: 65 cctcggcccaaaaaccaaagacgatcaaaaacatctgggtggccataatgcattctgact 124
||||| ||||| ||||||||||||||||| |||||||| |||||||||||||||| |||
Sbjct: 27602021 cctcgtcccaagaaccaaagacgatcaaagacatctggatggccataatgcattcggacc 27602080
Query: 125 ttaagtggatcagccagaacacgctgccccagagtgacaaaacttgtctcctgggcagac 184
|| |||||||| ||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct: 27602081 ttcagtggatctgccagaacacgctgccccagagtaacaaaacttgtttcctgggcagac 27602140
Query: 185 atgaaccaagcaagagaagaaactgaacccgtgaagacgtgttcccgaaccccaagaatt 244
||||||||||| |||||||| || ||||| ||||| || ||||||||||||||||| |||
Sbjct: 27602141 atgaaccaagctagagaagacacagaaccagtgaaaacatgttcccgaaccccaaggatt 27602200
Query: 245 ttaggcttgcgaattccataataacgattgaactcttctagtaggtttctcatctttaga 304
|| ||||||||||||||||||| ||||||||||| ||||| || ||||||||||| |||
Sbjct: 27602201 tttggcttgcgaattccataatggcgattgaactcctctagcagatttctcatcttgaga 27602260
Query: 305 gcttcttcaaagtagttgtcttggttcatatcaatagtttgaactgcatcgccccttgtg 364
||||||||||| ||||||||||||||||||||||||||||| || ||||| |||||||||
Sbjct: 27602261 gcttcttcaaaatagttgtcttggttcatatcaatagtttggacagcatcaccccttgtg 27602320
Query: 365 aagatgagtgcatgattctgattttctggctttccttcgccaatcttcaactctccaggc 424
||||||||||||||||| || || ||||| || ||||| |||| ||||| |||||||
Sbjct: 27602321 aagatgagtgcatgattttggttctctggtttgccttcaccaagcttcagtggtccaggc 27602380
Query: 425 aacttaacccgatagatttcaacctcccgctgcaattgttggtcatatttcacgagaaca 484
|||||||| ||||| || |||||||||||||||| ||| || ||||||||||| || |||
Sbjct: 27602381 aacttaacacgataaatctcaacctcccgctgcagttgctgatcatatttcacaaggaca 27602440
Query: 485 gag 487
|||
Sbjct: 27602441 gag 27602443
Score = 111 bits (56), Expect = 5e-022
Identities = 167/204 (81%)
Strand = Plus / Plus
Query: 1 acagttgaaaccagcaaaaatgtcctcactaatgttgattattcttgatgctttactgat 60
|||||||||||| ||||| |||||||| || || ||||||| ||| ||||| || || ||
Sbjct: 31637512 acagttgaaacctgcaaatatgtcctcgctgatattgattactctggatgccttgcttat 31637571
Query: 61 accacctcggcccaaaaaccaaagacgatcaaaaacatctgggtggccataatgcattct 120
|||||||||| ||||||||||| |||||||| ||||| || || ||||||||||| |
Sbjct: 31637572 accacctcgggttaaaaaccaaaggcgatcaaatacatcaggatgcccataatgcatccg 31637631
Query: 121 gactttaagtggatcagccagaacacgctgccccagagtgacaaaacttgtctcctgggc 180
|| || | |||| ||| ||||| ||||| || || || ||||| ||||| || || ||
Sbjct: 31637632 aaccttcaacggattagctagaactcgctgtccaagggtaacaaagcttgtttcttgtgc 31637691
Query: 181 agacatgaaccaagcaagagaaga 204
|||||||||||||||||| |||||
Sbjct: 31637692 agacatgaaccaagcaagtgaaga 31637715
Score = 107 bits (54), Expect = 7e-021
Identities = 81/91 (89%)
Strand = Plus / Plus
Query: 519 tttcatcaacataagcaacacgtaatgcttcataatttttcattagctccaatatnncaa 578
||||||||||||| |||||||||| |||||||||||| ||||||||||| || || |||
Sbjct: 27602475 tttcatcaacataggcaacacgtagtgcttcataattcttcattagctctaaaatctcaa 27602534
Query: 579 nagcattggggtcattcttagctttctgctg 609
||||| |||||||||||||||||||||||
Sbjct: 27602535 aagcatgagggtcattcttagctttctgctg 27602565
Score = 63.9 bits (32), Expect = 1e-007
Identities = 98/120 (81%)
Strand = Plus / Plus
Query: 280 ttctagtaggtttctcatctttagagcttcttcaaagtagttgtcttggttcatatcaat 339
|||||||||||| | |||||| || || || ||||| || || || ||||||||||||||
Sbjct: 31637791 ttctagtaggttacgcatcttgagggcctcctcaaaataattatcctggttcatatcaat 31637850
Query: 340 agtttgaactgcatcgccccttgtgaagatgagtgcatgattctgattttctggctttcc 399
||||| || ||||| || | |||||| |||| ||||| ||||||||||| || |||||
Sbjct: 31637851 cgtttgcacagcatcacctcgtgtgaatatgatggcatggttctgattttcaggttttcc 31637910
>dbj|AK099782.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013095O05, full
insert sequence
Length = 5774
Score = 111 bits (56), Expect = 5e-022
Identities = 167/204 (81%)
Strand = Plus / Minus
Query: 1 acagttgaaaccagcaaaaatgtcctcactaatgttgattattcttgatgctttactgat 60
|||||||||||| ||||| |||||||| || || ||||||| ||| ||||| || || ||
Sbjct: 4020 acagttgaaacctgcaaatatgtcctcgctgatattgattactctggatgccttgcttat 3961
Query: 61 accacctcggcccaaaaaccaaagacgatcaaaaacatctgggtggccataatgcattct 120
|||||||||| ||||||||||| |||||||| ||||| || || ||||||||||| |
Sbjct: 3960 accacctcgggttaaaaaccaaaggcgatcaaatacatcaggatgcccataatgcatccg 3901
Query: 121 gactttaagtggatcagccagaacacgctgccccagagtgacaaaacttgtctcctgggc 180
|| || | |||| ||| ||||| ||||| || || || ||||| ||||| || || ||
Sbjct: 3900 aaccttcaacggattagctagaactcgctgtccaagggtaacaaagcttgtttcttgtgc 3841
Query: 181 agacatgaaccaagcaagagaaga 204
|||||||||||||||||| |||||
Sbjct: 3840 agacatgaaccaagcaagtgaaga 3817
Score = 63.9 bits (32), Expect = 1e-007
Identities = 98/120 (81%)
Strand = Plus / Minus
Query: 280 ttctagtaggtttctcatctttagagcttcttcaaagtagttgtcttggttcatatcaat 339
|||||||||||| | |||||| || || || ||||| || || || ||||||||||||||
Sbjct: 3741 ttctagtaggttacgcatcttgagggcctcctcaaaataattatcctggttcatatcaat 3682
Query: 340 agtttgaactgcatcgccccttgtgaagatgagtgcatgattctgattttctggctttcc 399
||||| || ||||| || | |||||| |||| ||||| ||||||||||| || |||||
Sbjct: 3681 cgtttgcacagcatcacctcgtgtgaatatgatggcatggttctgattttcaggttttcc 3622
>dbj|AK120195.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013036H01, full
insert sequence
Length = 5949
Score = 111 bits (56), Expect = 5e-022
Identities = 167/204 (81%)
Strand = Plus / Minus
Query: 1 acagttgaaaccagcaaaaatgtcctcactaatgttgattattcttgatgctttactgat 60
|||||||||||| ||||| |||||||| || || ||||||| ||| ||||| || || ||
Sbjct: 3924 acagttgaaacctgcaaatatgtcctcgctgatattgattactctggatgccttgcttat 3865
Query: 61 accacctcggcccaaaaaccaaagacgatcaaaaacatctgggtggccataatgcattct 120
|||||||||| ||||||||||| |||||||| ||||| || || ||||||||||| |
Sbjct: 3864 accacctcgggttaaaaaccaaaggcgatcaaatacatcaggatgcccataatgcatccg 3805
Query: 121 gactttaagtggatcagccagaacacgctgccccagagtgacaaaacttgtctcctgggc 180
|| || | |||| ||| ||||| ||||| || || || ||||| ||||| || || ||
Sbjct: 3804 aaccttcaacggattagctagaactcgctgtccaagggtaacaaagcttgtttcttgtgc 3745
Query: 181 agacatgaaccaagcaagagaaga 204
|||||||||||||||||| |||||
Sbjct: 3744 agacatgaaccaagcaagtgaaga 3721
Score = 63.9 bits (32), Expect = 1e-007
Identities = 98/120 (81%)
Strand = Plus / Minus
Query: 280 ttctagtaggtttctcatctttagagcttcttcaaagtagttgtcttggttcatatcaat 339
|||||||||||| | |||||| || || || ||||| || || || ||||||||||||||
Sbjct: 3645 ttctagtaggttacgcatcttgagggcctcctcaaaataattatcctggttcatatcaat 3586
Query: 340 agtttgaactgcatcgccccttgtgaagatgagtgcatgattctgattttctggctttcc 399
||||| || ||||| || | |||||| |||| ||||| ||||||||||| || |||||
Sbjct: 3585 cgtttgcacagcatcacctcgtgtgaatatgatggcatggttctgattttcaggttttcc 3526
>dbj|AK120402.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013088I17, full
insert sequence
Length = 5396
Score = 111 bits (56), Expect = 5e-022
Identities = 167/204 (81%)
Strand = Plus / Minus
Query: 1 acagttgaaaccagcaaaaatgtcctcactaatgttgattattcttgatgctttactgat 60
|||||||||||| ||||| |||||||| || || ||||||| ||| ||||| || || ||
Sbjct: 3609 acagttgaaacctgcaaatatgtcctcgctgatattgattactctggatgccttgcttat 3550
Query: 61 accacctcggcccaaaaaccaaagacgatcaaaaacatctgggtggccataatgcattct 120
|||||||||| ||||||||||| |||||||| ||||| || || ||||||||||| |
Sbjct: 3549 accacctcgggttaaaaaccaaaggcgatcaaatacatcaggatgcccataatgcatccg 3490
Query: 121 gactttaagtggatcagccagaacacgctgccccagagtgacaaaacttgtctcctgggc 180
|| || | |||| ||| ||||| ||||| || || || ||||| ||||| || || ||
Sbjct: 3489 aaccttcaacggattagctagaactcgctgtccaagggtaacaaagcttgtttcttgtgc 3430
Query: 181 agacatgaaccaagcaagagaaga 204
|||||||||||||||||| |||||
Sbjct: 3429 agacatgaaccaagcaagtgaaga 3406
Score = 63.9 bits (32), Expect = 1e-007
Identities = 98/120 (81%)
Strand = Plus / Minus
Query: 280 ttctagtaggtttctcatctttagagcttcttcaaagtagttgtcttggttcatatcaat 339
|||||||||||| | |||||| || || || ||||| || || || ||||||||||||||
Sbjct: 3330 ttctagtaggttacgcatcttgagggcctcctcaaaataattatcctggttcatatcaat 3271
Query: 340 agtttgaactgcatcgccccttgtgaagatgagtgcatgattctgattttctggctttcc 399
||||| || ||||| || | |||||| |||| ||||| ||||||||||| || |||||
Sbjct: 3270 cgtttgcacagcatcacctcgtgtgaatatgatggcatggttctgattttcaggttttcc 3211
>gb|AACV01002367.1| Oryza sativa (japonica cultivar-group) chromosome 1 Ctg002367, whole
genome shotgun sequence
Length = 23038
Score = 111 bits (56), Expect = 5e-022
Identities = 167/204 (81%)
Strand = Plus / Minus
Query: 1 acagttgaaaccagcaaaaatgtcctcactaatgttgattattcttgatgctttactgat 60
|||||||||||| ||||| |||||||| || || ||||||| ||| ||||| || || ||
Sbjct: 11861 acagttgaaacctgcaaatatgtcctcgctgatattgattactctggatgccttgcttat 11802
Query: 61 accacctcggcccaaaaaccaaagacgatcaaaaacatctgggtggccataatgcattct 120
|||||||||| ||||||||||| |||||||| ||||| || || ||||||||||| |
Sbjct: 11801 accacctcgggttaaaaaccaaaggcgatcaaatacatcaggatgcccataatgcatccg 11742
Query: 121 gactttaagtggatcagccagaacacgctgccccagagtgacaaaacttgtctcctgggc 180
|| || | |||| ||| ||||| ||||| || || || ||||| ||||| || || ||
Sbjct: 11741 aaccttcaacggattagctagaactcgctgtccaagggtaacaaagcttgtttcttgtgc 11682
Query: 181 agacatgaaccaagcaagagaaga 204
|||||||||||||||||| |||||
Sbjct: 11681 agacatgaaccaagcaagtgaaga 11658
Score = 63.9 bits (32), Expect = 1e-007
Identities = 98/120 (81%)
Strand = Plus / Minus
Query: 280 ttctagtaggtttctcatctttagagcttcttcaaagtagttgtcttggttcatatcaat 339
|||||||||||| | |||||| || || || ||||| || || || ||||||||||||||
Sbjct: 11582 ttctagtaggttacgcatcttgagggcctcctcaaaataattatcctggttcatatcaat 11523
Query: 340 agtttgaactgcatcgccccttgtgaagatgagtgcatgattctgattttctggctttcc 399
||||| || ||||| || | |||||| |||| ||||| ||||||||||| || |||||
Sbjct: 11522 cgtttgcacagcatcacctcgtgtgaatatgatggcatggttctgattttcaggttttcc 11463
>ref|NM_191270.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 5373
Score = 111 bits (56), Expect = 5e-022
Identities = 167/204 (81%)
Strand = Plus / Minus
Query: 1 acagttgaaaccagcaaaaatgtcctcactaatgttgattattcttgatgctttactgat 60
|||||||||||| ||||| |||||||| || || ||||||| ||| ||||| || || ||
Sbjct: 3885 acagttgaaacctgcaaatatgtcctcgctgatattgattactctggatgccttgcttat 3826
Query: 61 accacctcggcccaaaaaccaaagacgatcaaaaacatctgggtggccataatgcattct 120
|||||||||| ||||||||||| |||||||| ||||| || || ||||||||||| |
Sbjct: 3825 accacctcgggttaaaaaccaaaggcgatcaaatacatcaggatgcccataatgcatccg 3766
Query: 121 gactttaagtggatcagccagaacacgctgccccagagtgacaaaacttgtctcctgggc 180
|| || | |||| ||| ||||| ||||| || || || ||||| ||||| || || ||
Sbjct: 3765 aaccttcaacggattagctagaactcgctgtccaagggtaacaaagcttgtttcttgtgc 3706
Query: 181 agacatgaaccaagcaagagaaga 204
|||||||||||||||||| |||||
Sbjct: 3705 agacatgaaccaagcaagtgaaga 3682
Score = 63.9 bits (32), Expect = 1e-007
Identities = 98/120 (81%)
Strand = Plus / Minus
Query: 280 ttctagtaggtttctcatctttagagcttcttcaaagtagttgtcttggttcatatcaat 339
|||||||||||| | |||||| || || || ||||| || || || ||||||||||||||
Sbjct: 3606 ttctagtaggttacgcatcttgagggcctcctcaaaataattatcctggttcatatcaat 3547
Query: 340 agtttgaactgcatcgccccttgtgaagatgagtgcatgattctgattttctggctttcc 399
||||| || ||||| || | |||||| |||| ||||| ||||||||||| || |||||
Sbjct: 3546 cgtttgcacagcatcacctcgtgtgaatatgatggcatggttctgattttcaggttttcc 3487
>dbj|AP003249.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
clone:P0435B05
Length = 150997
Score = 111 bits (56), Expect = 5e-022
Identities = 167/204 (81%)
Strand = Plus / Plus
Query: 1 acagttgaaaccagcaaaaatgtcctcactaatgttgattattcttgatgctttactgat 60
|||||||||||| ||||| |||||||| || || ||||||| ||| ||||| || || ||
Sbjct: 150535 acagttgaaacctgcaaatatgtcctcgctgatattgattactctggatgccttgcttat 150594
Query: 61 accacctcggcccaaaaaccaaagacgatcaaaaacatctgggtggccataatgcattct 120
|||||||||| ||||||||||| |||||||| ||||| || || ||||||||||| |
Sbjct: 150595 accacctcgggttaaaaaccaaaggcgatcaaatacatcaggatgcccataatgcatccg 150654
Query: 121 gactttaagtggatcagccagaacacgctgccccagagtgacaaaacttgtctcctgggc 180
|| || | |||| ||| ||||| ||||| || || || ||||| ||||| || || ||
Sbjct: 150655 aaccttcaacggattagctagaactcgctgtccaagggtaacaaagcttgtttcttgtgc 150714
Query: 181 agacatgaaccaagcaagagaaga 204
|||||||||||||||||| |||||
Sbjct: 150715 agacatgaaccaagcaagtgaaga 150738
Score = 63.9 bits (32), Expect = 1e-007
Identities = 98/120 (81%)
Strand = Plus / Plus
Query: 280 ttctagtaggtttctcatctttagagcttcttcaaagtagttgtcttggttcatatcaat 339
|||||||||||| | |||||| || || || ||||| || || || ||||||||||||||
Sbjct: 150814 ttctagtaggttacgcatcttgagggcctcctcaaaataattatcctggttcatatcaat 150873
Query: 340 agtttgaactgcatcgccccttgtgaagatgagtgcatgattctgattttctggctttcc 399
||||| || ||||| || | |||||| |||| ||||| ||||||||||| || |||||
Sbjct: 150874 cgtttgcacagcatcacctcgtgtgaatatgatggcatggttctgattttcaggttttcc 150933
>dbj|AP003268.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
clone:P0503C12
Length = 147180
Score = 111 bits (56), Expect = 5e-022
Identities = 167/204 (81%)
Strand = Plus / Plus
Query: 1 acagttgaaaccagcaaaaatgtcctcactaatgttgattattcttgatgctttactgat 60
|||||||||||| ||||| |||||||| || || ||||||| ||| ||||| || || ||
Sbjct: 51244 acagttgaaacctgcaaatatgtcctcgctgatattgattactctggatgccttgcttat 51303
Query: 61 accacctcggcccaaaaaccaaagacgatcaaaaacatctgggtggccataatgcattct 120
|||||||||| ||||||||||| |||||||| ||||| || || ||||||||||| |
Sbjct: 51304 accacctcgggttaaaaaccaaaggcgatcaaatacatcaggatgcccataatgcatccg 51363
Query: 121 gactttaagtggatcagccagaacacgctgccccagagtgacaaaacttgtctcctgggc 180
|| || | |||| ||| ||||| ||||| || || || ||||| ||||| || || ||
Sbjct: 51364 aaccttcaacggattagctagaactcgctgtccaagggtaacaaagcttgtttcttgtgc 51423
Query: 181 agacatgaaccaagcaagagaaga 204
|||||||||||||||||| |||||
Sbjct: 51424 agacatgaaccaagcaagtgaaga 51447
Score = 63.9 bits (32), Expect = 1e-007
Identities = 98/120 (81%)
Strand = Plus / Plus
Query: 280 ttctagtaggtttctcatctttagagcttcttcaaagtagttgtcttggttcatatcaat 339
|||||||||||| | |||||| || || || ||||| || || || ||||||||||||||
Sbjct: 51523 ttctagtaggttacgcatcttgagggcctcctcaaaataattatcctggttcatatcaat 51582
Query: 340 agtttgaactgcatcgccccttgtgaagatgagtgcatgattctgattttctggctttcc 399
||||| || ||||| || | |||||| |||| ||||| ||||||||||| || |||||
Sbjct: 51583 cgtttgcacagcatcacctcgtgtgaatatgatggcatggttctgattttcaggttttcc 51642
>gb|AQ288228.1|AQ288228 nbxb0032N19f CUGI Rice BAC Library Oryza sativa (japonica
cultivar-group) genomic clone nbxb0032N19f, DNA sequence
Length = 758
Score = 107 bits (54), Expect = 7e-021
Identities = 81/91 (89%)
Strand = Plus / Plus
Query: 519 tttcatcaacataagcaacacgtaatgcttcataatttttcattagctccaatatnncaa 578
||||||||||||| |||||||||| |||||||||||| ||||||||||| || || |||
Sbjct: 104 tttcatcaacataggcaacacgtagtgcttcataattcttcattagctctaaaatctcaa 163
Query: 579 nagcattggggtcattcttagctttctgctg 609
||||| |||||||||||||||||||||||
Sbjct: 164 aagcatgagggtcattcttagctttctgctg 194
Score = 60.0 bits (30), Expect = 2e-006
Identities = 60/70 (85%)
Strand = Plus / Plus
Query: 418 tccaggcaacttaacccgatagatttcaacctcccgctgcaattgttggtcatatttcac 477
||||||||||||||| ||||| || ||| ||||||||||| ||| || |||||||||||
Sbjct: 3 tccaggcaacttaacacgataaatctcattctcccgctgcagttgctgatcatatttcac 62
Query: 478 gagaacagag 487
|| ||||||
Sbjct: 63 aaggacagag 72
>gb|CB671521.1|CB671521 OSJNEe05C09.f OSJNEe Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEe05C09 5', mRNA sequence
Length = 838
Score = 107 bits (54), Expect = 7e-021
Identities = 213/266 (80%)
Strand = Plus / Minus
Query: 88 atcaaaaacatctgggtggccataatgcattctgactttaagtggatcagccagaacacg 147
||||||||||||||| ||||||||||||||||| ||||| ||||||| |||||||||||
Sbjct: 475 atcaaaaacatctggatggccataatgcattcttactttcagtggattggccagaacacg 416
Query: 148 ctgccccagagtgacaaaacttgtctcctgggcagacatgaaccaagcaagagaagaaac 207
||| |||| ||||||||||| || ||||| ||||| ||| | || || ||||||||
Sbjct: 415 ctgtcccaatgtgacaaaactagtttcctgattggacataaacgaggccagcgaagaaac 356
Query: 208 tgaacccgtgaagacgtgttcccgaaccccaagaattttaggcttgcgaattccataata 267
|||||||| |||||||| | ||| ||||||||| ||||||| | | |||| ||
Sbjct: 355 acttcccgtgaacacgtgttctctaacaccaagaattgaaggcttgtgcttgccatgatt 296
Query: 268 acgattgaactcttctagtaggtttctcatctttagagcttcttcaaagtagttgtcttg 327
||| ||| || || || ||||||||||| || || || || ||||| ||||| || ||
Sbjct: 295 ctgatagaattcctcaagcaggtttctcattttgagtgcctcctcaaaatagttatcctg 236
Query: 328 gttcatatcaatagtttgaactgcat 353
||||||||||| ||||| |||||||
Sbjct: 235 attcatatcaatggtttgcactgcat 210
>ref|NM_187562.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 6168
Score = 107 bits (54), Expect = 7e-021
Identities = 213/266 (80%)
Strand = Plus / Minus
Query: 88 atcaaaaacatctgggtggccataatgcattctgactttaagtggatcagccagaacacg 147
||||||||||||||| ||||||||||||||||| ||||| ||||||| |||||||||||
Sbjct: 3294 atcaaaaacatctggatggccataatgcattcttactttcagtggattggccagaacacg 3235
Query: 148 ctgccccagagtgacaaaacttgtctcctgggcagacatgaaccaagcaagagaagaaac 207
||| |||| ||||||||||| || ||||| ||||| ||| | || || ||||||||
Sbjct: 3234 ctgtcccaatgtgacaaaactagtttcctgattggacataaacgaggccagcgaagaaac 3175
Query: 208 tgaacccgtgaagacgtgttcccgaaccccaagaattttaggcttgcgaattccataata 267
|||||||| |||||||| | ||| ||||||||| ||||||| | | |||| ||
Sbjct: 3174 acttcccgtgaacacgtgttctctaacaccaagaattgaaggcttgtgcttgccatgatt 3115
Query: 268 acgattgaactcttctagtaggtttctcatctttagagcttcttcaaagtagttgtcttg 327
||| ||| || || || ||||||||||| || || || || ||||| ||||| || ||
Sbjct: 3114 ctgatagaattcctcaagcaggtttctcattttgagtgcctcctcaaaatagttatcctg 3055
Query: 328 gttcatatcaatagtttgaactgcat 353
||||||||||| ||||| |||||||
Sbjct: 3054 attcatatcaatggtttgcactgcat 3029
>gb|CF307470.1|CF307470 HDA1--06-M20.g1 OsHDAC1-overexpressing transgenic rice lambda phage
cDNA library I (HDA1) Oryza sativa (japonica
cultivar-group) cDNA clone HDA1--06-M20, mRNA sequence
Length = 542
Score = 99.6 bits (50), Expect = 2e-018
Identities = 80/90 (88%)
Strand = Plus / Minus
Query: 88 atcaaaaacatctgggtggccataatgcattctgactttaagtggatcagccagaacacg 147
||||||||||||||| ||||||||||||||||| ||||| ||||||| |||||||||||
Sbjct: 403 atcaaaaacatctggatggccataatgcattcttactttcagtggattggccagaacacg 344
Query: 148 ctgccccagagtgacaaaacttgtctcctg 177
||| |||| ||||||||||| || |||||
Sbjct: 343 ctgtcccaatgtgacaaaactagtttcctg 314
>dbj|AK069531.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023020O14, full
insert sequence
Length = 2087
Score = 99.6 bits (50), Expect = 2e-018
Identities = 80/90 (88%)
Strand = Plus / Minus
Query: 88 atcaaaaacatctgggtggccataatgcattctgactttaagtggatcagccagaacacg 147
||||||||||||||| ||||||||||||||||| ||||| ||||||| |||||||||||
Sbjct: 264 atcaaaaacatctggatggccataatgcattcttactttcagtggattggccagaacacg 205
Query: 148 ctgccccagagtgacaaaacttgtctcctg 177
||| |||| ||||||||||| || |||||
Sbjct: 204 ctgtcccaatgtgacaaaactagtttcctg 175
>gb|AC118980.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1263H11,
complete sequence
Length = 126827
Score = 58.0 bits (29), Expect = 6e-006
Identities = 32/33 (96%)
Strand = Plus / Minus
Query: 88 atcaaaaacatctgggtggccataatgcattct 120
||||||||||||||| |||||||||||||||||
Sbjct: 68135 atcaaaaacatctggatggccataatgcattct 68103
Score = 44.1 bits (22), Expect = 0.090
Identities = 43/50 (86%)
Strand = Plus / Minus
Query: 128 agtggatcagccagaacacgctgccccagagtgacaaaacttgtctcctg 177
||||||| |||||||||||||| |||| ||||||||||| || |||||
Sbjct: 68011 agtggattggccagaacacgctgtcccaatgtgacaaaactagtttcctg 67962
>gb|AACV01005773.1| Oryza sativa (japonica cultivar-group) chromosome 3 Ctg005773, whole
genome shotgun sequence
Length = 82514
Score = 58.0 bits (29), Expect = 6e-006
Identities = 32/33 (96%)
Strand = Plus / Minus
Query: 88 atcaaaaacatctgggtggccataatgcattct 120
||||||||||||||| |||||||||||||||||
Sbjct: 20162 atcaaaaacatctggatggccataatgcattct 20130
Score = 44.1 bits (22), Expect = 0.090
Identities = 43/50 (86%)
Strand = Plus / Minus
Query: 128 agtggatcagccagaacacgctgccccagagtgacaaaacttgtctcctg 177
||||||| |||||||||||||| |||| ||||||||||| || |||||
Sbjct: 20038 agtggattggccagaacacgctgtcccaatgtgacaaaactagtttcctg 19989
>ref|NT_107183.1| Oryza sativa (japonica cultivar-group)
Length = 1680144
Score = 58.0 bits (29), Expect = 6e-006
Identities = 32/33 (96%)
Strand = Plus / Minus
Query: 88 atcaaaaacatctgggtggccataatgcattct 120
||||||||||||||| |||||||||||||||||
Sbjct: 1047918 atcaaaaacatctggatggccataatgcattct 1047886
Score = 50.1 bits (25), Expect = 0.001
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 362 gtgaagatgagtgcatgattctgattttctggctttccttc 402
|||||||| | ||||||||| |||||||| |||||||||||
Sbjct: 1565395 gtgaagattattgcatgattttgattttcaggctttccttc 1565435
Score = 44.1 bits (22), Expect = 0.090
Identities = 43/50 (86%)
Strand = Plus / Minus
Query: 128 agtggatcagccagaacacgctgccccagagtgacaaaacttgtctcctg 177
||||||| |||||||||||||| |||| ||||||||||| || |||||
Sbjct: 1047794 agtggattggccagaacacgctgtcccaatgtgacaaaactagtttcctg 1047745
>ref|XM_550490.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 5316
Score = 58.0 bits (29), Expect = 6e-006
Identities = 127/159 (79%), Gaps = 3/159 (1%)
Strand = Plus / Minus
Query: 86 cgatcaaaaacatctgggtggccataatgcattctgactttaagtggatcagccagaaca 145
|||||||||||||| || || ||||||||||||| || || | | | ||| ||||||
Sbjct: 3749 cgatcaaaaacatcaggatgtccataatgcattcgaaccttga---ggtaagcaagaaca 3693
Query: 146 cgctgccccagagtgacaaaacttgtctcctgggcagacatgaaccaagcaagagaagaa 205
|| ||||||| ||| ||||||||||| |||||| |||||| || | ||||| ||||||
Sbjct: 3692 cgttgccccaaagtaacaaaacttgtttcctggttagacataaatgatgcaagcgaagaa 3633
Query: 206 actgaacccgtgaagacgtgttcccgaaccccaagaatt 244
|| |||||||| || ||||||| ||| |||||||||
Sbjct: 3632 acacttcccgtgaacacatgttccctaacaccaagaatt 3594
>gb|CH401173.1| Oryza sativa (japonica cultivar-group) chromosome 3 scaffold000010 genomic
scaffold, whole genome shotgun sequence
Length = 13858245
Score = 58.0 bits (29), Expect = 6e-006
Identities = 32/33 (96%)
Strand = Plus / Minus
Query: 88 atcaaaaacatctgggtggccataatgcattct 120
||||||||||||||| |||||||||||||||||
Sbjct: 1046097 atcaaaaacatctggatggccataatgcattct 1046065
Score = 50.1 bits (25), Expect = 0.001
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 362 gtgaagatgagtgcatgattctgattttctggctttccttc 402
|||||||| | ||||||||| |||||||| |||||||||||
Sbjct: 1571451 gtgaagattattgcatgattttgattttcaggctttccttc 1571491
Score = 44.1 bits (22), Expect = 0.090
Identities = 43/50 (86%)
Strand = Plus / Minus
Query: 128 agtggatcagccagaacacgctgccccagagtgacaaaacttgtctcctg 177
||||||| |||||||||||||| |||| ||||||||||| || |||||
Sbjct: 1045973 agtggattggccagaacacgctgtcccaatgtgacaaaactagtttcctg 1045924
>gb|CM000140.1| Oryza sativa (japonica cultivar-group) chromosome 3, whole genome shotgun
sequence
Length = 37803064
Score = 58.0 bits (29), Expect = 6e-006
Identities = 32/33 (96%)
Strand = Plus / Minus
Query: 88 atcaaaaacatctgggtggccataatgcattct 120
||||||||||||||| |||||||||||||||||
Sbjct: 1238459 atcaaaaacatctggatggccataatgcattct 1238427
Score = 50.1 bits (25), Expect = 0.001
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 362 gtgaagatgagtgcatgattctgattttctggctttccttc 402
|||||||| | ||||||||| |||||||| |||||||||||
Sbjct: 1763813 gtgaagattattgcatgattttgattttcaggctttccttc 1763853
Score = 44.1 bits (22), Expect = 0.090
Identities = 43/50 (86%)
Strand = Plus / Minus
Query: 128 agtggatcagccagaacacgctgccccagagtgacaaaacttgtctcctg 177
||||||| |||||||||||||| |||| ||||||||||| || |||||
Sbjct: 1238335 agtggattggccagaacacgctgtcccaatgtgacaaaactagtttcctg 1238286
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
sequence
Length = 36192742
Score = 58.0 bits (29), Expect = 6e-006
Identities = 32/33 (96%)
Strand = Plus / Minus
Query: 88 atcaaaaacatctgggtggccataatgcattct 120
||||||||||||||| |||||||||||||||||
Sbjct: 1047918 atcaaaaacatctggatggccataatgcattct 1047886
Score = 50.1 bits (25), Expect = 0.001
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 362 gtgaagatgagtgcatgattctgattttctggctttccttc 402
|||||||| | ||||||||| |||||||| |||||||||||
Sbjct: 1565395 gtgaagattattgcatgattttgattttcaggctttccttc 1565435
Score = 44.1 bits (22), Expect = 0.090
Identities = 43/50 (86%)
Strand = Plus / Minus
Query: 128 agtggatcagccagaacacgctgccccagagtgacaaaacttgtctcctg 177
||||||| |||||||||||||| |||| ||||||||||| || |||||
Sbjct: 1047794 agtggattggccagaacacgctgtcccaatgtgacaaaactagtttcctg 1047745
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
Length = 36102668
Score = 58.0 bits (29), Expect = 6e-006
Identities = 32/33 (96%)
Strand = Plus / Minus
Query: 88 atcaaaaacatctgggtggccataatgcattct 120
||||||||||||||| |||||||||||||||||
Sbjct: 1047920 atcaaaaacatctggatggccataatgcattct 1047888
Score = 50.1 bits (25), Expect = 0.001
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 362 gtgaagatgagtgcatgattctgattttctggctttccttc 402
|||||||| | ||||||||| |||||||| |||||||||||
Sbjct: 1565397 gtgaagattattgcatgattttgattttcaggctttccttc 1565437
Score = 44.1 bits (22), Expect = 0.090
Identities = 43/50 (86%)
Strand = Plus / Minus
Query: 128 agtggatcagccagaacacgctgccccagagtgacaaaacttgtctcctg 177
||||||| |||||||||||||| |||| ||||||||||| || |||||
Sbjct: 1047796 agtggattggccagaacacgctgtcccaatgtgacaaaactagtttcctg 1047747
>gb|AY324384.1| Oryza sativa (japonica cultivar-group) callose synthase-like protein
mRNA, partial cds
Length = 2727
Score = 54.0 bits (27), Expect = 9e-005
Identities = 45/51 (88%)
Strand = Plus / Minus
Query: 157 agtgacaaaacttgtctcctgggcagacatgaaccaagcaagagaagaaac 207
|||||||||||||||||| || ||||||||||| ||||||||||||||
Sbjct: 1068 agtgacaaaacttgtctcttgatttgacatgaaccacgcaagagaagaaac 1018
Score = 50.1 bits (25), Expect = 0.001
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 374 gcatgattctgattttctggctttccttc 402
||||| |||||||||||||||||||||||
Sbjct: 848 gcatggttctgattttctggctttccttc 820
Score = 44.1 bits (22), Expect = 0.090
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 3 agttgaaaccagcaaaaatgtcctcactaa 32
||||||| |||||||| |||||||||||||
Sbjct: 1222 agttgaatccagcaaatatgtcctcactaa 1193
>dbj|AP004082.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
clone:OJ1149_C12
Length = 120743
Score = 54.0 bits (27), Expect = 9e-005
Identities = 45/51 (88%)
Strand = Plus / Minus
Query: 157 agtgacaaaacttgtctcctgggcagacatgaaccaagcaagagaagaaac 207
|||||||||||||||||| || ||||||||||| ||||||||||||||
Sbjct: 90703 agtgacaaaacttgtctcttgatttgacatgaaccacgcaagagaagaaac 90653
Score = 50.1 bits (25), Expect = 0.001
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 374 gcatgattctgattttctggctttccttc 402
||||| |||||||||||||||||||||||
Sbjct: 90317 gcatggttctgattttctggctttccttc 90289
>dbj|AP005290.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
clone:OJ1282_E10
Length = 107284
Score = 54.0 bits (27), Expect = 9e-005
Identities = 45/51 (88%)
Strand = Plus / Minus
Query: 157 agtgacaaaacttgtctcctgggcagacatgaaccaagcaagagaagaaac 207
|||||||||||||||||| || ||||||||||| ||||||||||||||
Sbjct: 10534 agtgacaaaacttgtctcttgatttgacatgaaccacgcaagagaagaaac 10484
Score = 50.1 bits (25), Expect = 0.001
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 374 gcatgattctgattttctggctttccttc 402
||||| |||||||||||||||||||||||
Sbjct: 10148 gcatggttctgattttctggctttccttc 10120
>gb|AACV01005686.1| Oryza sativa (japonica cultivar-group) chromosome 2 Ctg005686, whole
genome shotgun sequence
Length = 38041
Score = 54.0 bits (27), Expect = 9e-005
Identities = 45/51 (88%)
Strand = Plus / Minus
Query: 157 agtgacaaaacttgtctcctgggcagacatgaaccaagcaagagaagaaac 207
|||||||||||||||||| || ||||||||||| ||||||||||||||
Sbjct: 5058 agtgacaaaacttgtctcttgatttgacatgaaccacgcaagagaagaaac 5008
Score = 50.1 bits (25), Expect = 0.001
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 374 gcatgattctgattttctggctttccttc 402
||||| |||||||||||||||||||||||
Sbjct: 4672 gcatggttctgattttctggctttccttc 4644
>ref|XM_468556.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 5910
Score = 54.0 bits (27), Expect = 9e-005
Identities = 45/51 (88%)
Strand = Plus / Minus
Query: 157 agtgacaaaacttgtctcctgggcagacatgaaccaagcaagagaagaaac 207
|||||||||||||||||| || ||||||||||| ||||||||||||||
Sbjct: 4251 agtgacaaaacttgtctcttgatttgacatgaaccacgcaagagaagaaac 4201
Score = 50.1 bits (25), Expect = 0.001
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 374 gcatgattctgattttctggctttccttc 402
||||| |||||||||||||||||||||||
Sbjct: 4031 gcatggttctgattttctggctttccttc 4003
Score = 44.1 bits (22), Expect = 0.090
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 3 agttgaaaccagcaaaaatgtcctcactaa 32
||||||| |||||||| |||||||||||||
Sbjct: 4405 agttgaatccagcaaatatgtcctcactaa 4376
>ref|NT_107182.1| Oryza sativa (japonica cultivar-group)
Length = 1785023
Score = 54.0 bits (27), Expect = 9e-005
Identities = 45/51 (88%)
Strand = Plus / Minus
Query: 157 agtgacaaaacttgtctcctgggcagacatgaaccaagcaagagaagaaac 207
|||||||||||||||||| || ||||||||||| ||||||||||||||
Sbjct: 1655261 agtgacaaaacttgtctcttgatttgacatgaaccacgcaagagaagaaac 1655211
Score = 50.1 bits (25), Expect = 0.001
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 374 gcatgattctgattttctggctttccttc 402
||||| |||||||||||||||||||||||
Sbjct: 1654875 gcatggttctgattttctggctttccttc 1654847
>gb|CH401170.1| Oryza sativa (japonica cultivar-group) chromosome 2 scaffold000007 genomic
scaffold, whole genome shotgun sequence
Length = 22563205
Score = 54.0 bits (27), Expect = 9e-005
Identities = 45/51 (88%)
Strand = Plus / Minus
Query: 157 agtgacaaaacttgtctcctgggcagacatgaaccaagcaagagaagaaac 207
|||||||||||||||||| || ||||||||||| ||||||||||||||
Sbjct: 22449167 agtgacaaaacttgtctcttgatttgacatgaaccacgcaagagaagaaac 22449117
Score = 50.1 bits (25), Expect = 0.001
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 374 gcatgattctgattttctggctttccttc 402
||||| |||||||||||||||||||||||
Sbjct: 22448781 gcatggttctgattttctggctttccttc 22448753
>gb|CM000139.1| Oryza sativa (japonica cultivar-group) chromosome 2, whole genome shotgun
sequence
Length = 36016269
Score = 54.0 bits (27), Expect = 9e-005
Identities = 45/51 (88%)
Strand = Plus / Minus
Query: 157 agtgacaaaacttgtctcctgggcagacatgaaccaagcaagagaagaaac 207
|||||||||||||||||| || ||||||||||| ||||||||||||||
Sbjct: 35902231 agtgacaaaacttgtctcttgatttgacatgaaccacgcaagagaagaaac 35902181
Score = 50.1 bits (25), Expect = 0.001
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 374 gcatgattctgattttctggctttccttc 402
||||| |||||||||||||||||||||||
Sbjct: 35901845 gcatggttctgattttctggctttccttc 35901817
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
sequence
Length = 35954743
Score = 54.0 bits (27), Expect = 9e-005
Identities = 45/51 (88%)
Strand = Plus / Minus
Query: 157 agtgacaaaacttgtctcctgggcagacatgaaccaagcaagagaagaaac 207
|||||||||||||||||| || ||||||||||| ||||||||||||||
Sbjct: 35819988 agtgacaaaacttgtctcttgatttgacatgaaccacgcaagagaagaaac 35819938
Score = 50.1 bits (25), Expect = 0.001
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 374 gcatgattctgattttctggctttccttc 402
||||| |||||||||||||||||||||||
Sbjct: 35819602 gcatggttctgattttctggctttccttc 35819574
>gb|AZ047463.1|AZ047463 nbeb0094M21f CUGI Rice BAC Library (EcoRI) Oryza sativa (japonica
cultivar-group) genomic clone OSJNBb0094M21f, DNA
sequence
Length = 430
Score = 52.0 bits (26), Expect = 4e-004
Identities = 29/30 (96%)
Strand = Plus / Minus
Query: 373 tgcatgattctgattttctggctttccttc 402
||||||||||||||||||||| ||||||||
Sbjct: 147 tgcatgattctgattttctggttttccttc 118
>ref|NT_107235.1| Oryza sativa (japonica cultivar-group)
Length = 369247
Score = 52.0 bits (26), Expect = 4e-004
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 373 tgcatgattctgattttctggctttccttc 402
||||||||||||||||||||| ||||||||
Sbjct: 158593 tgcatgattctgattttctggttttccttc 158622
>dbj|AP004685.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
clone:P0017G10
Length = 166700
Score = 52.0 bits (26), Expect = 4e-004
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 373 tgcatgattctgattttctggctttccttc 402
||||||||||||||||||||| ||||||||
Sbjct: 158593 tgcatgattctgattttctggttttccttc 158622
>dbj|AP005750.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
clone:OSJNBa0069C14
Length = 150579
Score = 52.0 bits (26), Expect = 4e-004
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 373 tgcatgattctgattttctggctttccttc 402
||||||||||||||||||||| ||||||||
Sbjct: 19795 tgcatgattctgattttctggttttccttc 19824
>gb|AACV01014975.1| Oryza sativa (japonica cultivar-group) chromosome 6 Ctg014975, whole
genome shotgun sequence
Length = 9397
Score = 52.0 bits (26), Expect = 4e-004
Identities = 29/30 (96%)
Strand = Plus / Minus
Query: 373 tgcatgattctgattttctggctttccttc 402
||||||||||||||||||||| ||||||||
Sbjct: 1924 tgcatgattctgattttctggttttccttc 1895
>gb|CH401216.1| Oryza sativa (japonica cultivar-group) chromosome 6 scaffold000053 genomic
scaffold, whole genome shotgun sequence
Length = 12033173
Score = 52.0 bits (26), Expect = 4e-004
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 373 tgcatgattctgattttctggctttccttc 402
||||||||||||||||||||| ||||||||
Sbjct: 11853251 tgcatgattctgattttctggttttccttc 11853280
>gb|CM000143.1| Oryza sativa (japonica cultivar-group) chromosome 6, whole genome shotgun
sequence
Length = 29740507
Score = 52.0 bits (26), Expect = 4e-004
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 373 tgcatgattctgattttctggctttccttc 402
||||||||||||||||||||| ||||||||
Sbjct: 29551988 tgcatgattctgattttctggttttccttc 29552017
Score = 48.1 bits (24), Expect = 0.006
Identities = 57/68 (83%)
Strand = Plus / Plus
Query: 140 agaacacgctgccccagagtgacaaaacttgtctcctgggcagacatgaaccaagcaaga 199
|||||||| ||||||| ||| ||||||||||| |||||| |||||| || | |||||
Sbjct: 622201 agaacacgttgccccaaagtaacaaaacttgtttcctggttagacataaatgatgcaagc 622260
Query: 200 gaagaaac 207
||||||||
Sbjct: 622261 gaagaaac 622268
Score = 44.1 bits (22), Expect = 0.090
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 86 cgatcaaaaacatctgggtggccataatgcattc 119
|||||||||||||| || || |||||||||||||
Sbjct: 622019 cgatcaaaaacatcaggatgtccataatgcattc 622052
Score = 42.1 bits (21), Expect = 0.36
Identities = 63/77 (81%)
Strand = Plus / Plus
Query: 326 tggttcatatcaatagtttgaactgcatcgccccttgtgaagatgagtgcatgattctga 385
|||||||||||||| ||||| | || || |||| ||| |||| | ||||||||||||
Sbjct: 3914761 tggttcatatcaattgtttggagagcttcaccccgtgtaaagacaattgcatgattctgg 3914820
Query: 386 ttttctggctttccttc 402
|||||||| || |||||
Sbjct: 3914821 ttttctggtttaccttc 3914837
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
sequence
Length = 30731886
Score = 52.0 bits (26), Expect = 4e-004
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 373 tgcatgattctgattttctggctttccttc 402
||||||||||||||||||||| ||||||||
Sbjct: 30521232 tgcatgattctgattttctggttttccttc 30521261
Score = 48.1 bits (24), Expect = 0.006
Identities = 57/68 (83%)
Strand = Plus / Plus
Query: 140 agaacacgctgccccagagtgacaaaacttgtctcctgggcagacatgaaccaagcaaga 199
|||||||| ||||||| ||| ||||||||||| |||||| |||||| || | |||||
Sbjct: 729805 agaacacgttgccccaaagtaacaaaacttgtttcctggttagacataaatgatgcaagc 729864
Query: 200 gaagaaac 207
||||||||
Sbjct: 729865 gaagaaac 729872
Score = 44.1 bits (22), Expect = 0.090
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 86 cgatcaaaaacatctgggtggccataatgcattc 119
|||||||||||||| || || |||||||||||||
Sbjct: 729623 cgatcaaaaacatcaggatgtccataatgcattc 729656
Score = 42.1 bits (21), Expect = 0.36
Identities = 63/77 (81%)
Strand = Plus / Plus
Query: 326 tggttcatatcaatagtttgaactgcatcgccccttgtgaagatgagtgcatgattctga 385
|||||||||||||| ||||| | || || |||| ||| |||| | ||||||||||||
Sbjct: 4082182 tggttcatatcaattgtttggagagcttcaccccgtgtaaagacaattgcatgattctgg 4082241
Query: 386 ttttctggctttccttc 402
|||||||| || |||||
Sbjct: 4082242 ttttctggtttaccttc 4082258
>gb|CG409152.1|CG409152 Ds848 Ds insertion lines Oryza sativa (japonica cultivar-group)
genomic, DNA sequence
Length = 301
Score = 50.1 bits (25), Expect = 0.001
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 362 gtgaagatgagtgcatgattctgattttctggctttccttc 402
|||||||| | ||||||||| |||||||| |||||||||||
Sbjct: 2 gtgaagattattgcatgattttgattttcaggctttccttc 42
>gb|CG409286.1|CG409286 Ds982 Ds insertion lines Oryza sativa (japonica cultivar-group)
genomic, DNA sequence
Length = 301
Score = 50.1 bits (25), Expect = 0.001
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 362 gtgaagatgagtgcatgattctgattttctggctttccttc 402
|||||||| | ||||||||| |||||||| |||||||||||
Sbjct: 2 gtgaagattattgcatgattttgattttcaggctttccttc 42
>dbj|AG022680.1| Oryza sativa (japonica cultivar-group) DNA, clone:T05193T, 3'
flanking sequence of Tos17 insertion in rice strain
NC2543, genomic survey sequence
Length = 486
Score = 50.1 bits (25), Expect = 0.001
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 362 gtgaagatgagtgcatgattctgattttctggctttccttc 402
|||||||| | ||||||||| |||||||| |||||||||||
Sbjct: 249 gtgaagattattgcatgattttgattttcaggctttccttc 289
>gb|CB675632.1|CB675632 OSJNEe11H21.r OSJNEe Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEe11H21 3', mRNA sequence
Length = 914
Score = 50.1 bits (25), Expect = 0.001
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 374 gcatgattctgattttctggctttccttc 402
||||| |||||||||||||||||||||||
Sbjct: 43 gcatggttctgattttctggctttccttc 71
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 874,714
Number of Sequences: 438736
Number of extensions: 874714
Number of successful extensions: 4755
Number of sequences better than 0.5: 65
Number of HSP's better than 0.5 without gapping: 68
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 4400
Number of HSP's gapped (non-prelim): 321
length of query: 632
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 611
effective length of database: 2,791,206,460
effective search space: 1705427147060
effective search space used: 1705427147060
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)