BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QCG38e04.yg.2.1
(690 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
ref|NT_107235.1| Oryza sativa (japonica cultivar-group) 603 e-170
dbj|AP004685.3| Oryza sativa (japonica cultivar-group) geno... 603 e-170
dbj|AP005750.3| Oryza sativa (japonica cultivar-group) geno... 603 e-170
gb|AACV01014975.1| Oryza sativa (japonica cultivar-group) c... 603 e-170
gb|CH401216.1| Oryza sativa (japonica cultivar-group) chrom... 603 e-170
gb|CM000143.1| Oryza sativa (japonica cultivar-group) chrom... 603 e-170
dbj|AP008212.1| Oryza sativa (japonica cultivar-group) geno... 603 e-170
gb|AY324384.1| Oryza sativa (japonica cultivar-group) callo... 486 e-135
dbj|AP004082.3| Oryza sativa (japonica cultivar-group) geno... 486 e-135
dbj|AP005290.2| Oryza sativa (japonica cultivar-group) geno... 486 e-135
gb|AACV01005686.1| Oryza sativa (japonica cultivar-group) c... 486 e-135
ref|XM_468556.1| Oryza sativa (japonica cultivar-group), mRNA 486 e-135
ref|NT_107182.1| Oryza sativa (japonica cultivar-group) 486 e-135
gb|CH401170.1| Oryza sativa (japonica cultivar-group) chrom... 486 e-135
gb|CM000139.1| Oryza sativa (japonica cultivar-group) chrom... 486 e-135
dbj|AP008208.1| Oryza sativa (japonica cultivar-group) geno... 486 e-135
gb|CB659583.1|CB659583 OSJNEc16L01.f OSJNEc Oryza sativa (j... 392 e-107
dbj|AK105109.1| Oryza sativa (japonica cultivar-group) cDNA... 313 7e-083
dbj|AG209903.1| Oryza sativa (japonica cultivar-group) DNA,... 125 3e-026
dbj|AG212141.1| Oryza sativa (japonica cultivar-group) DNA,... 125 3e-026
dbj|AG206969.1| Oryza sativa (japonica cultivar-group) DNA,... 125 3e-026
dbj|AB157743.1| Oryza sativa (japonica cultivar-group) DNA,... 125 3e-026
gb|CB662166.1|CB662166 OSJNEd05O23.f OSJNEd Oryza sativa (j... 125 3e-026
gb|CB677902.1|CB677902 OSJNEe15F12.f OSJNEe Oryza sativa (j... 125 3e-026
dbj|AK062279.1| Oryza sativa (japonica cultivar-group) cDNA... 125 3e-026
gb|AC104427.2| Oryza sativa (japonica cultivar-group) chrom... 125 3e-026
gb|AC144426.1| Oryza sativa (japonica cultivar-group) chrom... 125 3e-026
dbj|AK105008.2| Oryza sativa (japonica cultivar-group) cDNA... 125 3e-026
gb|AACV01005795.1| Oryza sativa (japonica cultivar-group) c... 125 3e-026
ref|NM_187591.1| Oryza sativa (japonica cultivar-group), p... 125 3e-026
ref|NT_107183.1| Oryza sativa (japonica cultivar-group) 125 3e-026
gb|CH401173.1| Oryza sativa (japonica cultivar-group) chrom... 125 3e-026
gb|CM000140.1| Oryza sativa (japonica cultivar-group) chrom... 125 3e-026
dbj|AP008209.1| Oryza sativa (japonica cultivar-group) geno... 125 3e-026
gb|DP000009.1| Oryza sativa (japonica cultivar-group) chrom... 125 3e-026
dbj|AG206827.1| Oryza sativa (japonica cultivar-group) DNA,... 119 2e-024
gb|CB642889.1|CB642889 OSJNEb03E21.f OSJNEb Oryza sativa (j... 109 2e-021
gb|CB669058.1|CB669058 OSJNEe01E09.f OSJNEe Oryza sativa (j... 101 5e-019
dbj|AG209650.1| Oryza sativa (japonica cultivar-group) DNA,... 82 5e-013
dbj|AP003454.1| Oryza sativa (japonica cultivar-group) chro... 80 2e-012
gb|AACV01013162.1| Oryza sativa (japonica cultivar-group) c... 80 2e-012
dbj|AP007226.1| Oryza sativa (japonica cultivar-group) geno... 80 2e-012
dbj|AP007257.2| Oryza sativa (japonica cultivar-group) geno... 80 2e-012
gb|CH401209.1| Oryza sativa (japonica cultivar-group) chrom... 80 2e-012
dbj|BA000029.3| Oryza sativa (japonica cultivar-group) mito... 74 1e-010
dbj|AG021572.1| Oryza sativa (japonica cultivar-group) DNA,... 68 7e-009
dbj|AK064446.1| Oryza sativa (japonica cultivar-group) cDNA... 68 7e-009
gb|AACV01001413.1| Oryza sativa (japonica cultivar-group) c... 68 7e-009
dbj|BA000010.8| Oryza sativa (japonica cultivar-group) geno... 68 7e-009
ref|NM_193211.1| Oryza sativa (japonica cultivar-group), p... 68 7e-009
ref|NT_079926.2| Oryza sativa (japonica cultivar-group) 68 7e-009
dbj|AP003447.2| Oryza sativa (japonica cultivar-group) geno... 68 7e-009
dbj|AP003445.2| Oryza sativa (japonica cultivar-group) geno... 68 7e-009
gb|CH401166.1| Oryza sativa (japonica cultivar-group) chrom... 68 7e-009
gb|CM000138.1| Oryza sativa (japonica cultivar-group) chrom... 68 7e-009
dbj|AP008207.1| Oryza sativa (japonica cultivar-group) geno... 68 7e-009
dbj|AP005614.2| Oryza sativa (japonica cultivar-group) geno... 66 3e-008
gb|AACV01003740.1| Oryza sativa (japonica cultivar-group) c... 66 3e-008
ref|NT_107178.1| Oryza sativa (japonica cultivar-group) 66 3e-008
gb|CH401169.1| Oryza sativa (japonica cultivar-group) chrom... 66 3e-008
gb|CB659584.1|CB659584 OSJNEc16L01.r OSJNEc Oryza sativa (j... 64 1e-007
gb|AACV01001409.1| Oryza sativa (japonica cultivar-group) c... 58 7e-006
ref|NM_193203.1| Oryza sativa (japonica cultivar-group), p... 58 7e-006
gb|AQ859945.1|AQ859945 nbeb0013F14f CUGI Rice BAC Library (... 50 0.002
gb|D39285.1|D39285 RICR3242A Rice root Oryza sativa (japoni... 50 0.002
dbj|AK059373.1| Oryza sativa (japonica cultivar-group) cDNA... 50 0.002
dbj|AK069531.1| Oryza sativa (japonica cultivar-group) cDNA... 50 0.002
gb|AC118980.2| Oryza sativa (japonica cultivar-group) chrom... 50 0.002
gb|AACV01005773.1| Oryza sativa (japonica cultivar-group) c... 50 0.002
ref|NM_187562.1| Oryza sativa (japonica cultivar-group), p... 50 0.002
dbj|AG213037.1| Oryza sativa (japonica cultivar-group) DNA,... 48 0.006
dbj|AG024562.1| Oryza sativa (japonica cultivar-group) DNA,... 48 0.006
dbj|AB156884.1| Oryza sativa (japonica cultivar-group) DNA,... 48 0.006
emb|AL831802.5|CNS08CAF Oryza sativa chromosome 12, . Parti... 48 0.006
ref|NT_107147.1| Oryza sativa (japonica cultivar-group) 48 0.006
gb|AACV01024591.1| Oryza sativa (japonica cultivar-group) c... 48 0.006
gb|CH401274.1| Oryza sativa (japonica cultivar-group) chrom... 48 0.006
gb|CM000149.1| Oryza sativa (japonica cultivar-group) chrom... 48 0.006
dbj|AP008218.1| Oryza sativa (japonica cultivar-group) geno... 48 0.006
gb|DP000011.1| Oryza sativa (japonica cultivar-group) chrom... 48 0.006
dbj|AG023285.1| Oryza sativa (japonica cultivar-group) DNA,... 42 0.39
>ref|NT_107235.1| Oryza sativa (japonica cultivar-group)
Length = 369247
Score = 603 bits (304), Expect = e-170
Identities = 515/587 (87%)
Strand = Plus / Plus
Query: 16 gtaccgcgcttcccagagcaacgaaggggctcctgctctttttcccaccatgactcccag 75
||||| ||||| |||||| | ||||| |||||||||||||||||||||||||| |||||
Sbjct: 156113 gtaccacgctttccagagtatcgaagaggctcctgctctttttcccaccatgattcccaa 156172
Query: 76 cttttctctggtgccacaccaatacctccacgattgctgatccacttgtgccaatcagtc 135
||||| |||||| || |||||||||||||| |||||||||||||| | ||||||||||
Sbjct: 156173 ctttttgttggtgctactccaatacctccacggttgctgatccacttattccaatcagtc 156232
Query: 136 cagtcatccacaatcttctgccactcaaatccagaaggattgaacaggaatggtgcaaag 195
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 156233 cagtcatccacaatcttctgccactcaaatccagaaggattgaataggaatggtgcaaag 156292
Query: 196 agccaagtgcccaccatgaaccacatggatacggtgatgaagatgtaagttatagcccct 255
||||| ||||||||||| ||||||||||| || |||||||| ||||| || |||||||||
Sbjct: 156293 agccaggtgcccaccataaaccacatggaaacagtgatgaaaatgtatgtgatagcccct 156352
Query: 256 ctatatgactgaccaaatatttcatacacaactagtagaatcatcagctcaaggcccttg 315
|| ||||| || ||||| |||||||||||||| || | |||||||||||||| ||||||
Sbjct: 156353 ctgtatgattgcccaaagatttcatacacaaccagcaaaatcatcagctcaatacccttg 156412
Query: 316 acaaaatggctgcgggaataaagtcgatagttctcagcaaatttggcatggaacaccaca 375
|||||||||||||| ||||||||||| ||||| |||||||| |||||||| |||||||||
Sbjct: 156413 acaaaatggctgcgagaataaagtcggtagttgtcagcaaacttggcatgaaacaccaca 156472
Query: 376 aacccacgtccagtggctctgtattccgctcctccatggagtaacgtccttccgtagtag 435
|| ||||| ||||||||||| ||||| |||||||| |||||||| ||||||||||| ||
Sbjct: 156473 aatccacgcccagtggctctatattcagctcctccgtggagtaatgtccttccgtaataa 156532
Query: 436 tgagtttttgttcccaacgagaatgtgaagaaaacagaggccaactgaagctgcatcagt 495
|||||||| || || | || ||||| ||||||||||| ||||||||||| ||||| |||
Sbjct: 156533 tgagttttggtcccaagtgaaaatgtaaagaaaacagatgccaactgaagttgcataagt 156592
Query: 496 ataaaatcactcaatgcagttctgaatcctctctccaaaccgatttccatcatcatgggc 555
| ||| || || | ||| ||||||||||| ||||||| ||| ||||||||||||||||||
Sbjct: 156593 acaaagtcgcttagtgctgttctgaatcccctctccagaccaatttccatcatcatgggc 156652
Query: 556 agcgccatcaaaaatccangnngcacaaaagacnctgacgcangagc 602
| |||||||||||||||| | | ||||||||| |||| ||| ||||
Sbjct: 156653 aacgccatcaaaaatccaagttgaacaaaagactctgatgcaagagc 156699
>dbj|AP004685.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
clone:P0017G10
Length = 166700
Score = 603 bits (304), Expect = e-170
Identities = 515/587 (87%)
Strand = Plus / Plus
Query: 16 gtaccgcgcttcccagagcaacgaaggggctcctgctctttttcccaccatgactcccag 75
||||| ||||| |||||| | ||||| |||||||||||||||||||||||||| |||||
Sbjct: 156113 gtaccacgctttccagagtatcgaagaggctcctgctctttttcccaccatgattcccaa 156172
Query: 76 cttttctctggtgccacaccaatacctccacgattgctgatccacttgtgccaatcagtc 135
||||| |||||| || |||||||||||||| |||||||||||||| | ||||||||||
Sbjct: 156173 ctttttgttggtgctactccaatacctccacggttgctgatccacttattccaatcagtc 156232
Query: 136 cagtcatccacaatcttctgccactcaaatccagaaggattgaacaggaatggtgcaaag 195
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 156233 cagtcatccacaatcttctgccactcaaatccagaaggattgaataggaatggtgcaaag 156292
Query: 196 agccaagtgcccaccatgaaccacatggatacggtgatgaagatgtaagttatagcccct 255
||||| ||||||||||| ||||||||||| || |||||||| ||||| || |||||||||
Sbjct: 156293 agccaggtgcccaccataaaccacatggaaacagtgatgaaaatgtatgtgatagcccct 156352
Query: 256 ctatatgactgaccaaatatttcatacacaactagtagaatcatcagctcaaggcccttg 315
|| ||||| || ||||| |||||||||||||| || | |||||||||||||| ||||||
Sbjct: 156353 ctgtatgattgcccaaagatttcatacacaaccagcaaaatcatcagctcaatacccttg 156412
Query: 316 acaaaatggctgcgggaataaagtcgatagttctcagcaaatttggcatggaacaccaca 375
|||||||||||||| ||||||||||| ||||| |||||||| |||||||| |||||||||
Sbjct: 156413 acaaaatggctgcgagaataaagtcggtagttgtcagcaaacttggcatgaaacaccaca 156472
Query: 376 aacccacgtccagtggctctgtattccgctcctccatggagtaacgtccttccgtagtag 435
|| ||||| ||||||||||| ||||| |||||||| |||||||| ||||||||||| ||
Sbjct: 156473 aatccacgcccagtggctctatattcagctcctccgtggagtaatgtccttccgtaataa 156532
Query: 436 tgagtttttgttcccaacgagaatgtgaagaaaacagaggccaactgaagctgcatcagt 495
|||||||| || || | || ||||| ||||||||||| ||||||||||| ||||| |||
Sbjct: 156533 tgagttttggtcccaagtgaaaatgtaaagaaaacagatgccaactgaagttgcataagt 156592
Query: 496 ataaaatcactcaatgcagttctgaatcctctctccaaaccgatttccatcatcatgggc 555
| ||| || || | ||| ||||||||||| ||||||| ||| ||||||||||||||||||
Sbjct: 156593 acaaagtcgcttagtgctgttctgaatcccctctccagaccaatttccatcatcatgggc 156652
Query: 556 agcgccatcaaaaatccangnngcacaaaagacnctgacgcangagc 602
| |||||||||||||||| | | ||||||||| |||| ||| ||||
Sbjct: 156653 aacgccatcaaaaatccaagttgaacaaaagactctgatgcaagagc 156699
>dbj|AP005750.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
clone:OSJNBa0069C14
Length = 150579
Score = 603 bits (304), Expect = e-170
Identities = 515/587 (87%)
Strand = Plus / Plus
Query: 16 gtaccgcgcttcccagagcaacgaaggggctcctgctctttttcccaccatgactcccag 75
||||| ||||| |||||| | ||||| |||||||||||||||||||||||||| |||||
Sbjct: 17315 gtaccacgctttccagagtatcgaagaggctcctgctctttttcccaccatgattcccaa 17374
Query: 76 cttttctctggtgccacaccaatacctccacgattgctgatccacttgtgccaatcagtc 135
||||| |||||| || |||||||||||||| |||||||||||||| | ||||||||||
Sbjct: 17375 ctttttgttggtgctactccaatacctccacggttgctgatccacttattccaatcagtc 17434
Query: 136 cagtcatccacaatcttctgccactcaaatccagaaggattgaacaggaatggtgcaaag 195
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 17435 cagtcatccacaatcttctgccactcaaatccagaaggattgaataggaatggtgcaaag 17494
Query: 196 agccaagtgcccaccatgaaccacatggatacggtgatgaagatgtaagttatagcccct 255
||||| ||||||||||| ||||||||||| || |||||||| ||||| || |||||||||
Sbjct: 17495 agccaggtgcccaccataaaccacatggaaacagtgatgaaaatgtatgtgatagcccct 17554
Query: 256 ctatatgactgaccaaatatttcatacacaactagtagaatcatcagctcaaggcccttg 315
|| ||||| || ||||| |||||||||||||| || | |||||||||||||| ||||||
Sbjct: 17555 ctgtatgattgcccaaagatttcatacacaaccagcaaaatcatcagctcaatacccttg 17614
Query: 316 acaaaatggctgcgggaataaagtcgatagttctcagcaaatttggcatggaacaccaca 375
|||||||||||||| ||||||||||| ||||| |||||||| |||||||| |||||||||
Sbjct: 17615 acaaaatggctgcgagaataaagtcggtagttgtcagcaaacttggcatgaaacaccaca 17674
Query: 376 aacccacgtccagtggctctgtattccgctcctccatggagtaacgtccttccgtagtag 435
|| ||||| ||||||||||| ||||| |||||||| |||||||| ||||||||||| ||
Sbjct: 17675 aatccacgcccagtggctctatattcagctcctccgtggagtaatgtccttccgtaataa 17734
Query: 436 tgagtttttgttcccaacgagaatgtgaagaaaacagaggccaactgaagctgcatcagt 495
|||||||| || || | || ||||| ||||||||||| ||||||||||| ||||| |||
Sbjct: 17735 tgagttttggtcccaagtgaaaatgtaaagaaaacagatgccaactgaagttgcataagt 17794
Query: 496 ataaaatcactcaatgcagttctgaatcctctctccaaaccgatttccatcatcatgggc 555
| ||| || || | ||| ||||||||||| ||||||| ||| ||||||||||||||||||
Sbjct: 17795 acaaagtcgcttagtgctgttctgaatcccctctccagaccaatttccatcatcatgggc 17854
Query: 556 agcgccatcaaaaatccangnngcacaaaagacnctgacgcangagc 602
| |||||||||||||||| | | ||||||||| |||| ||| ||||
Sbjct: 17855 aacgccatcaaaaatccaagttgaacaaaagactctgatgcaagagc 17901
>gb|AACV01014975.1| Oryza sativa (japonica cultivar-group) chromosome 6 Ctg014975, whole
genome shotgun sequence
Length = 9397
Score = 603 bits (304), Expect = e-170
Identities = 515/587 (87%)
Strand = Plus / Minus
Query: 16 gtaccgcgcttcccagagcaacgaaggggctcctgctctttttcccaccatgactcccag 75
||||| ||||| |||||| | ||||| |||||||||||||||||||||||||| |||||
Sbjct: 4404 gtaccacgctttccagagtatcgaagaggctcctgctctttttcccaccatgattcccaa 4345
Query: 76 cttttctctggtgccacaccaatacctccacgattgctgatccacttgtgccaatcagtc 135
||||| |||||| || |||||||||||||| |||||||||||||| | ||||||||||
Sbjct: 4344 ctttttgttggtgctactccaatacctccacggttgctgatccacttattccaatcagtc 4285
Query: 136 cagtcatccacaatcttctgccactcaaatccagaaggattgaacaggaatggtgcaaag 195
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 4284 cagtcatccacaatcttctgccactcaaatccagaaggattgaataggaatggtgcaaag 4225
Query: 196 agccaagtgcccaccatgaaccacatggatacggtgatgaagatgtaagttatagcccct 255
||||| ||||||||||| ||||||||||| || |||||||| ||||| || |||||||||
Sbjct: 4224 agccaggtgcccaccataaaccacatggaaacagtgatgaaaatgtatgtgatagcccct 4165
Query: 256 ctatatgactgaccaaatatttcatacacaactagtagaatcatcagctcaaggcccttg 315
|| ||||| || ||||| |||||||||||||| || | |||||||||||||| ||||||
Sbjct: 4164 ctgtatgattgcccaaagatttcatacacaaccagcaaaatcatcagctcaatacccttg 4105
Query: 316 acaaaatggctgcgggaataaagtcgatagttctcagcaaatttggcatggaacaccaca 375
|||||||||||||| ||||||||||| ||||| |||||||| |||||||| |||||||||
Sbjct: 4104 acaaaatggctgcgagaataaagtcggtagttgtcagcaaacttggcatgaaacaccaca 4045
Query: 376 aacccacgtccagtggctctgtattccgctcctccatggagtaacgtccttccgtagtag 435
|| ||||| ||||||||||| ||||| |||||||| |||||||| ||||||||||| ||
Sbjct: 4044 aatccacgcccagtggctctatattcagctcctccgtggagtaatgtccttccgtaataa 3985
Query: 436 tgagtttttgttcccaacgagaatgtgaagaaaacagaggccaactgaagctgcatcagt 495
|||||||| || || | || ||||| ||||||||||| ||||||||||| ||||| |||
Sbjct: 3984 tgagttttggtcccaagtgaaaatgtaaagaaaacagatgccaactgaagttgcataagt 3925
Query: 496 ataaaatcactcaatgcagttctgaatcctctctccaaaccgatttccatcatcatgggc 555
| ||| || || | ||| ||||||||||| ||||||| ||| ||||||||||||||||||
Sbjct: 3924 acaaagtcgcttagtgctgttctgaatcccctctccagaccaatttccatcatcatgggc 3865
Query: 556 agcgccatcaaaaatccangnngcacaaaagacnctgacgcangagc 602
| |||||||||||||||| | | ||||||||| |||| ||| ||||
Sbjct: 3864 aacgccatcaaaaatccaagttgaacaaaagactctgatgcaagagc 3818
>gb|CH401216.1| Oryza sativa (japonica cultivar-group) chromosome 6 scaffold000053 genomic
scaffold, whole genome shotgun sequence
Length = 12033173
Score = 603 bits (304), Expect = e-170
Identities = 515/587 (87%)
Strand = Plus / Plus
Query: 16 gtaccgcgcttcccagagcaacgaaggggctcctgctctttttcccaccatgactcccag 75
||||| ||||| |||||| | ||||| |||||||||||||||||||||||||| |||||
Sbjct: 11850771 gtaccacgctttccagagtatcgaagaggctcctgctctttttcccaccatgattcccaa 11850830
Query: 76 cttttctctggtgccacaccaatacctccacgattgctgatccacttgtgccaatcagtc 135
||||| |||||| || |||||||||||||| |||||||||||||| | ||||||||||
Sbjct: 11850831 ctttttgttggtgctactccaatacctccacggttgctgatccacttattccaatcagtc 11850890
Query: 136 cagtcatccacaatcttctgccactcaaatccagaaggattgaacaggaatggtgcaaag 195
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 11850891 cagtcatccacaatcttctgccactcaaatccagaaggattgaataggaatggtgcaaag 11850950
Query: 196 agccaagtgcccaccatgaaccacatggatacggtgatgaagatgtaagttatagcccct 255
||||| ||||||||||| ||||||||||| || |||||||| ||||| || |||||||||
Sbjct: 11850951 agccaggtgcccaccataaaccacatggaaacagtgatgaaaatgtatgtgatagcccct 11851010
Query: 256 ctatatgactgaccaaatatttcatacacaactagtagaatcatcagctcaaggcccttg 315
|| ||||| || ||||| |||||||||||||| || | |||||||||||||| ||||||
Sbjct: 11851011 ctgtatgattgcccaaagatttcatacacaaccagcaaaatcatcagctcaatacccttg 11851070
Query: 316 acaaaatggctgcgggaataaagtcgatagttctcagcaaatttggcatggaacaccaca 375
|||||||||||||| ||||||||||| ||||| |||||||| |||||||| |||||||||
Sbjct: 11851071 acaaaatggctgcgagaataaagtcggtagttgtcagcaaacttggcatgaaacaccaca 11851130
Query: 376 aacccacgtccagtggctctgtattccgctcctccatggagtaacgtccttccgtagtag 435
|| ||||| ||||||||||| ||||| |||||||| |||||||| ||||||||||| ||
Sbjct: 11851131 aatccacgcccagtggctctatattcagctcctccgtggagtaatgtccttccgtaataa 11851190
Query: 436 tgagtttttgttcccaacgagaatgtgaagaaaacagaggccaactgaagctgcatcagt 495
|||||||| || || | || ||||| ||||||||||| ||||||||||| ||||| |||
Sbjct: 11851191 tgagttttggtcccaagtgaaaatgtaaagaaaacagatgccaactgaagttgcataagt 11851250
Query: 496 ataaaatcactcaatgcagttctgaatcctctctccaaaccgatttccatcatcatgggc 555
| ||| || || | ||| ||||||||||| ||||||| ||| ||||||||||||||||||
Sbjct: 11851251 acaaagtcgcttagtgctgttctgaatcccctctccagaccaatttccatcatcatgggc 11851310
Query: 556 agcgccatcaaaaatccangnngcacaaaagacnctgacgcangagc 602
| |||||||||||||||| | | ||||||||| |||| ||| ||||
Sbjct: 11851311 aacgccatcaaaaatccaagttgaacaaaagactctgatgcaagagc 11851357
>gb|CM000143.1| Oryza sativa (japonica cultivar-group) chromosome 6, whole genome shotgun
sequence
Length = 29740507
Score = 603 bits (304), Expect = e-170
Identities = 515/587 (87%)
Strand = Plus / Plus
Query: 16 gtaccgcgcttcccagagcaacgaaggggctcctgctctttttcccaccatgactcccag 75
||||| ||||| |||||| | ||||| |||||||||||||||||||||||||| |||||
Sbjct: 29549508 gtaccacgctttccagagtatcgaagaggctcctgctctttttcccaccatgattcccaa 29549567
Query: 76 cttttctctggtgccacaccaatacctccacgattgctgatccacttgtgccaatcagtc 135
||||| |||||| || |||||||||||||| |||||||||||||| | ||||||||||
Sbjct: 29549568 ctttttgttggtgctactccaatacctccacggttgctgatccacttattccaatcagtc 29549627
Query: 136 cagtcatccacaatcttctgccactcaaatccagaaggattgaacaggaatggtgcaaag 195
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 29549628 cagtcatccacaatcttctgccactcaaatccagaaggattgaataggaatggtgcaaag 29549687
Query: 196 agccaagtgcccaccatgaaccacatggatacggtgatgaagatgtaagttatagcccct 255
||||| ||||||||||| ||||||||||| || |||||||| ||||| || |||||||||
Sbjct: 29549688 agccaggtgcccaccataaaccacatggaaacagtgatgaaaatgtatgtgatagcccct 29549747
Query: 256 ctatatgactgaccaaatatttcatacacaactagtagaatcatcagctcaaggcccttg 315
|| ||||| || ||||| |||||||||||||| || | |||||||||||||| ||||||
Sbjct: 29549748 ctgtatgattgcccaaagatttcatacacaaccagcaaaatcatcagctcaatacccttg 29549807
Query: 316 acaaaatggctgcgggaataaagtcgatagttctcagcaaatttggcatggaacaccaca 375
|||||||||||||| ||||||||||| ||||| |||||||| |||||||| |||||||||
Sbjct: 29549808 acaaaatggctgcgagaataaagtcggtagttgtcagcaaacttggcatgaaacaccaca 29549867
Query: 376 aacccacgtccagtggctctgtattccgctcctccatggagtaacgtccttccgtagtag 435
|| ||||| ||||||||||| ||||| |||||||| |||||||| ||||||||||| ||
Sbjct: 29549868 aatccacgcccagtggctctatattcagctcctccgtggagtaatgtccttccgtaataa 29549927
Query: 436 tgagtttttgttcccaacgagaatgtgaagaaaacagaggccaactgaagctgcatcagt 495
|||||||| || || | || ||||| ||||||||||| ||||||||||| ||||| |||
Sbjct: 29549928 tgagttttggtcccaagtgaaaatgtaaagaaaacagatgccaactgaagttgcataagt 29549987
Query: 496 ataaaatcactcaatgcagttctgaatcctctctccaaaccgatttccatcatcatgggc 555
| ||| || || | ||| ||||||||||| ||||||| ||| ||||||||||||||||||
Sbjct: 29549988 acaaagtcgcttagtgctgttctgaatcccctctccagaccaatttccatcatcatgggc 29550047
Query: 556 agcgccatcaaaaatccangnngcacaaaagacnctgacgcangagc 602
| |||||||||||||||| | | ||||||||| |||| ||| ||||
Sbjct: 29550048 aacgccatcaaaaatccaagttgaacaaaagactctgatgcaagagc 29550094
Score = 79.8 bits (40), Expect = 2e-012
Identities = 109/132 (82%)
Strand = Plus / Plus
Query: 90 cacaccaatacctccacgattgctgatccacttgtgccaatcagtccagtcatccacaat 149
|||||||||||| ||||| |||| ||||||||| ||| ||| ||||||||| || ||
Sbjct: 3912868 cacaccaataccaccacggctgctaatccacttgctccagtcatcccagtcatcaactat 3912927
Query: 150 cttctgccactcaaatccagaaggattgaacaggaatggtgcaaagagccaagtgcccac 209
|| ||||||||||| || || || ||||| |||||||||||||| ||||||||| ||
Sbjct: 3912928 tttttgccactcaaaccctgatgggttgaagaggaatggtgcaaacagccaagtgattac 3912987
Query: 210 catgaaccacat 221
|| |||||||||
Sbjct: 3912988 caggaaccacat 3912999
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
sequence
Length = 30731886
Score = 603 bits (304), Expect = e-170
Identities = 515/587 (87%)
Strand = Plus / Plus
Query: 16 gtaccgcgcttcccagagcaacgaaggggctcctgctctttttcccaccatgactcccag 75
||||| ||||| |||||| | ||||| |||||||||||||||||||||||||| |||||
Sbjct: 30518752 gtaccacgctttccagagtatcgaagaggctcctgctctttttcccaccatgattcccaa 30518811
Query: 76 cttttctctggtgccacaccaatacctccacgattgctgatccacttgtgccaatcagtc 135
||||| |||||| || |||||||||||||| |||||||||||||| | ||||||||||
Sbjct: 30518812 ctttttgttggtgctactccaatacctccacggttgctgatccacttattccaatcagtc 30518871
Query: 136 cagtcatccacaatcttctgccactcaaatccagaaggattgaacaggaatggtgcaaag 195
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 30518872 cagtcatccacaatcttctgccactcaaatccagaaggattgaataggaatggtgcaaag 30518931
Query: 196 agccaagtgcccaccatgaaccacatggatacggtgatgaagatgtaagttatagcccct 255
||||| ||||||||||| ||||||||||| || |||||||| ||||| || |||||||||
Sbjct: 30518932 agccaggtgcccaccataaaccacatggaaacagtgatgaaaatgtatgtgatagcccct 30518991
Query: 256 ctatatgactgaccaaatatttcatacacaactagtagaatcatcagctcaaggcccttg 315
|| ||||| || ||||| |||||||||||||| || | |||||||||||||| ||||||
Sbjct: 30518992 ctgtatgattgcccaaagatttcatacacaaccagcaaaatcatcagctcaatacccttg 30519051
Query: 316 acaaaatggctgcgggaataaagtcgatagttctcagcaaatttggcatggaacaccaca 375
|||||||||||||| ||||||||||| ||||| |||||||| |||||||| |||||||||
Sbjct: 30519052 acaaaatggctgcgagaataaagtcggtagttgtcagcaaacttggcatgaaacaccaca 30519111
Query: 376 aacccacgtccagtggctctgtattccgctcctccatggagtaacgtccttccgtagtag 435
|| ||||| ||||||||||| ||||| |||||||| |||||||| ||||||||||| ||
Sbjct: 30519112 aatccacgcccagtggctctatattcagctcctccgtggagtaatgtccttccgtaataa 30519171
Query: 436 tgagtttttgttcccaacgagaatgtgaagaaaacagaggccaactgaagctgcatcagt 495
|||||||| || || | || ||||| ||||||||||| ||||||||||| ||||| |||
Sbjct: 30519172 tgagttttggtcccaagtgaaaatgtaaagaaaacagatgccaactgaagttgcataagt 30519231
Query: 496 ataaaatcactcaatgcagttctgaatcctctctccaaaccgatttccatcatcatgggc 555
| ||| || || | ||| ||||||||||| ||||||| ||| ||||||||||||||||||
Sbjct: 30519232 acaaagtcgcttagtgctgttctgaatcccctctccagaccaatttccatcatcatgggc 30519291
Query: 556 agcgccatcaaaaatccangnngcacaaaagacnctgacgcangagc 602
| |||||||||||||||| | | ||||||||| |||| ||| ||||
Sbjct: 30519292 aacgccatcaaaaatccaagttgaacaaaagactctgatgcaagagc 30519338
Score = 79.8 bits (40), Expect = 2e-012
Identities = 109/132 (82%)
Strand = Plus / Plus
Query: 90 cacaccaatacctccacgattgctgatccacttgtgccaatcagtccagtcatccacaat 149
|||||||||||| ||||| |||| ||||||||| ||| ||| ||||||||| || ||
Sbjct: 4080289 cacaccaataccaccacggctgctaatccacttgctccagtcatcccagtcatcaactat 4080348
Query: 150 cttctgccactcaaatccagaaggattgaacaggaatggtgcaaagagccaagtgcccac 209
|| ||||||||||| || || || ||||| |||||||||||||| ||||||||| ||
Sbjct: 4080349 tttttgccactcaaaccctgatgggttgaagaggaatggtgcaaacagccaagtgattac 4080408
Query: 210 catgaaccacat 221
|| |||||||||
Sbjct: 4080409 caggaaccacat 4080420
>gb|AY324384.1| Oryza sativa (japonica cultivar-group) callose synthase-like protein
mRNA, partial cds
Length = 2727
Score = 486 bits (245), Expect = e-135
Identities = 470/546 (86%)
Strand = Plus / Minus
Query: 43 ggctcctgctctttttcccaccatgactcccagcttttctctggtgccacaccaatacct 102
|||||||||||||| ||||||||||||||||| |||||||| |||| |||||||||||
Sbjct: 2120 ggctcctgctctttctcccaccatgactcccaacttttctccggtggtacaccaatacca 2061
Query: 103 ccacgattgctgatccacttgtgccaatcagtccagtcatccacaatcttctgccactca 162
||||| |||||||||||||| | |||||||||||| |||||||||||||||||||||||
Sbjct: 2060 ccacggttgctgatccacttattccaatcagtccaatcatccacaatcttctgccactcg 2001
Query: 163 aatccagaaggattgaacaggaatggtgcaaagagccaagtgcccaccatgaaccacatg 222
|| ||||||||||| || |||||||||||||||||||| || | ||||| ||||||||
Sbjct: 2000 aacccagaaggattaaataggaatggtgcaaagagccaggttacaaccataaaccacatc 1941
Query: 223 gatacggtgatgaagatgtaagttatagcccctctatatgactgaccaaatatttcatac 282
|| | || ||||||||||| | ||||| |||| |||||| || ||||| |||||||||
Sbjct: 1940 gaaaatgtaatgaagatgtacgcgatagctcctcgatatgattgcccaaagatttcatac 1881
Query: 283 acaactagtagaatcatcagctcaaggcccttgacaaaatggctgcgggaataaagtcga 342
|||| ||| | ||||| || ||||| |||||||||||||||||||| || || ||||||
Sbjct: 1880 acaattagcaaaatcagcaactcaatacccttgacaaaatggctgcgtgagtatagtcga 1821
Query: 343 tagttctcagcaaatttggcatggaacaccacaaacccacgtccagtggctctgtattcc 402
|||||||| |||||||||||||||||||||||||| ||||| ||||| ||||| || ||
Sbjct: 1820 tagttctccgcaaatttggcatggaacaccacaaatccacgcccagtagctctatactcg 1761
Query: 403 gctcctccatggagtaacgtccttccgtagtagtgagtttttgttcccaacgagaatgtg 462
|||||||||||||| | ||| |||| |||||||||||||| || || | ||||||||
Sbjct: 1760 gctcctccatggagcagcgttgttccatagtagtgagttttggtcccgagagagaatgta 1701
Query: 463 aagaaaacagaggccaactgaagctgcatcagtataaaatcactcaatgcagttctgaat 522
||||||||||| || ||||| ||||||||||||| ||| || |||||||| ||||| |||
Sbjct: 1700 aagaaaacagatgctaactgcagctgcatcagtacaaagtcgctcaatgcggttctaaat 1641
Query: 523 cctctctccaaaccgatttccatcatcatgggcagcgccatcaaaaatccangnngcaca 582
|||||||||| ||| |||||||||||||| |||| |||||||||||| ||| | |||||
Sbjct: 1640 cctctctccagaccaatttccatcatcataggcaacgccatcaaaaacccaagctgcaca 1581
Query: 583 aaagac 588
||||||
Sbjct: 1580 aaagac 1575
>dbj|AP004082.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
clone:OJ1149_C12
Length = 120743
Score = 486 bits (245), Expect = e-135
Identities = 470/546 (86%)
Strand = Plus / Minus
Query: 43 ggctcctgctctttttcccaccatgactcccagcttttctctggtgccacaccaatacct 102
|||||||||||||| ||||||||||||||||| |||||||| |||| |||||||||||
Sbjct: 92270 ggctcctgctctttctcccaccatgactcccaacttttctccggtggtacaccaatacca 92211
Query: 103 ccacgattgctgatccacttgtgccaatcagtccagtcatccacaatcttctgccactca 162
||||| |||||||||||||| | |||||||||||| |||||||||||||||||||||||
Sbjct: 92210 ccacggttgctgatccacttattccaatcagtccaatcatccacaatcttctgccactcg 92151
Query: 163 aatccagaaggattgaacaggaatggtgcaaagagccaagtgcccaccatgaaccacatg 222
|| ||||||||||| || |||||||||||||||||||| || | ||||| ||||||||
Sbjct: 92150 aacccagaaggattaaataggaatggtgcaaagagccaggttacaaccataaaccacatc 92091
Query: 223 gatacggtgatgaagatgtaagttatagcccctctatatgactgaccaaatatttcatac 282
|| | || ||||||||||| | ||||| |||| |||||| || ||||| |||||||||
Sbjct: 92090 gaaaatgtaatgaagatgtacgcgatagctcctcgatatgattgcccaaagatttcatac 92031
Query: 283 acaactagtagaatcatcagctcaaggcccttgacaaaatggctgcgggaataaagtcga 342
|||| ||| | ||||| || ||||| |||||||||||||||||||| || || ||||||
Sbjct: 92030 acaattagcaaaatcagcaactcaatacccttgacaaaatggctgcgtgagtatagtcga 91971
Query: 343 tagttctcagcaaatttggcatggaacaccacaaacccacgtccagtggctctgtattcc 402
|||||||| |||||||||||||||||||||||||| ||||| ||||| ||||| || ||
Sbjct: 91970 tagttctccgcaaatttggcatggaacaccacaaatccacgcccagtagctctatactcg 91911
Query: 403 gctcctccatggagtaacgtccttccgtagtagtgagtttttgttcccaacgagaatgtg 462
|||||||||||||| | ||| |||| |||||||||||||| || || | ||||||||
Sbjct: 91910 gctcctccatggagcagcgttgttccatagtagtgagttttggtcccgagagagaatgta 91851
Query: 463 aagaaaacagaggccaactgaagctgcatcagtataaaatcactcaatgcagttctgaat 522
||||||||||| || ||||| ||||||||||||| ||| || |||||||| ||||| |||
Sbjct: 91850 aagaaaacagatgctaactgcagctgcatcagtacaaagtcgctcaatgcggttctaaat 91791
Query: 523 cctctctccaaaccgatttccatcatcatgggcagcgccatcaaaaatccangnngcaca 582
|||||||||| ||| |||||||||||||| |||| |||||||||||| ||| | |||||
Sbjct: 91790 cctctctccagaccaatttccatcatcataggcaacgccatcaaaaacccaagctgcaca 91731
Query: 583 aaagac 588
||||||
Sbjct: 91730 aaagac 91725
>dbj|AP005290.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
clone:OJ1282_E10
Length = 107284
Score = 486 bits (245), Expect = e-135
Identities = 470/546 (86%)
Strand = Plus / Minus
Query: 43 ggctcctgctctttttcccaccatgactcccagcttttctctggtgccacaccaatacct 102
|||||||||||||| ||||||||||||||||| |||||||| |||| |||||||||||
Sbjct: 12101 ggctcctgctctttctcccaccatgactcccaacttttctccggtggtacaccaatacca 12042
Query: 103 ccacgattgctgatccacttgtgccaatcagtccagtcatccacaatcttctgccactca 162
||||| |||||||||||||| | |||||||||||| |||||||||||||||||||||||
Sbjct: 12041 ccacggttgctgatccacttattccaatcagtccaatcatccacaatcttctgccactcg 11982
Query: 163 aatccagaaggattgaacaggaatggtgcaaagagccaagtgcccaccatgaaccacatg 222
|| ||||||||||| || |||||||||||||||||||| || | ||||| ||||||||
Sbjct: 11981 aacccagaaggattaaataggaatggtgcaaagagccaggttacaaccataaaccacatc 11922
Query: 223 gatacggtgatgaagatgtaagttatagcccctctatatgactgaccaaatatttcatac 282
|| | || ||||||||||| | ||||| |||| |||||| || ||||| |||||||||
Sbjct: 11921 gaaaatgtaatgaagatgtacgcgatagctcctcgatatgattgcccaaagatttcatac 11862
Query: 283 acaactagtagaatcatcagctcaaggcccttgacaaaatggctgcgggaataaagtcga 342
|||| ||| | ||||| || ||||| |||||||||||||||||||| || || ||||||
Sbjct: 11861 acaattagcaaaatcagcaactcaatacccttgacaaaatggctgcgtgagtatagtcga 11802
Query: 343 tagttctcagcaaatttggcatggaacaccacaaacccacgtccagtggctctgtattcc 402
|||||||| |||||||||||||||||||||||||| ||||| ||||| ||||| || ||
Sbjct: 11801 tagttctccgcaaatttggcatggaacaccacaaatccacgcccagtagctctatactcg 11742
Query: 403 gctcctccatggagtaacgtccttccgtagtagtgagtttttgttcccaacgagaatgtg 462
|||||||||||||| | ||| |||| |||||||||||||| || || | ||||||||
Sbjct: 11741 gctcctccatggagcagcgttgttccatagtagtgagttttggtcccgagagagaatgta 11682
Query: 463 aagaaaacagaggccaactgaagctgcatcagtataaaatcactcaatgcagttctgaat 522
||||||||||| || ||||| ||||||||||||| ||| || |||||||| ||||| |||
Sbjct: 11681 aagaaaacagatgctaactgcagctgcatcagtacaaagtcgctcaatgcggttctaaat 11622
Query: 523 cctctctccaaaccgatttccatcatcatgggcagcgccatcaaaaatccangnngcaca 582
|||||||||| ||| |||||||||||||| |||| |||||||||||| ||| | |||||
Sbjct: 11621 cctctctccagaccaatttccatcatcataggcaacgccatcaaaaacccaagctgcaca 11562
Query: 583 aaagac 588
||||||
Sbjct: 11561 aaagac 11556
>gb|AACV01005686.1| Oryza sativa (japonica cultivar-group) chromosome 2 Ctg005686, whole
genome shotgun sequence
Length = 38041
Score = 486 bits (245), Expect = e-135
Identities = 470/546 (86%)
Strand = Plus / Minus
Query: 43 ggctcctgctctttttcccaccatgactcccagcttttctctggtgccacaccaatacct 102
|||||||||||||| ||||||||||||||||| |||||||| |||| |||||||||||
Sbjct: 6625 ggctcctgctctttctcccaccatgactcccaacttttctccggtggtacaccaatacca 6566
Query: 103 ccacgattgctgatccacttgtgccaatcagtccagtcatccacaatcttctgccactca 162
||||| |||||||||||||| | |||||||||||| |||||||||||||||||||||||
Sbjct: 6565 ccacggttgctgatccacttattccaatcagtccaatcatccacaatcttctgccactcg 6506
Query: 163 aatccagaaggattgaacaggaatggtgcaaagagccaagtgcccaccatgaaccacatg 222
|| ||||||||||| || |||||||||||||||||||| || | ||||| ||||||||
Sbjct: 6505 aacccagaaggattaaataggaatggtgcaaagagccaggttacaaccataaaccacatc 6446
Query: 223 gatacggtgatgaagatgtaagttatagcccctctatatgactgaccaaatatttcatac 282
|| | || ||||||||||| | ||||| |||| |||||| || ||||| |||||||||
Sbjct: 6445 gaaaatgtaatgaagatgtacgcgatagctcctcgatatgattgcccaaagatttcatac 6386
Query: 283 acaactagtagaatcatcagctcaaggcccttgacaaaatggctgcgggaataaagtcga 342
|||| ||| | ||||| || ||||| |||||||||||||||||||| || || ||||||
Sbjct: 6385 acaattagcaaaatcagcaactcaatacccttgacaaaatggctgcgtgagtatagtcga 6326
Query: 343 tagttctcagcaaatttggcatggaacaccacaaacccacgtccagtggctctgtattcc 402
|||||||| |||||||||||||||||||||||||| ||||| ||||| ||||| || ||
Sbjct: 6325 tagttctccgcaaatttggcatggaacaccacaaatccacgcccagtagctctatactcg 6266
Query: 403 gctcctccatggagtaacgtccttccgtagtagtgagtttttgttcccaacgagaatgtg 462
|||||||||||||| | ||| |||| |||||||||||||| || || | ||||||||
Sbjct: 6265 gctcctccatggagcagcgttgttccatagtagtgagttttggtcccgagagagaatgta 6206
Query: 463 aagaaaacagaggccaactgaagctgcatcagtataaaatcactcaatgcagttctgaat 522
||||||||||| || ||||| ||||||||||||| ||| || |||||||| ||||| |||
Sbjct: 6205 aagaaaacagatgctaactgcagctgcatcagtacaaagtcgctcaatgcggttctaaat 6146
Query: 523 cctctctccaaaccgatttccatcatcatgggcagcgccatcaaaaatccangnngcaca 582
|||||||||| ||| |||||||||||||| |||| |||||||||||| ||| | |||||
Sbjct: 6145 cctctctccagaccaatttccatcatcataggcaacgccatcaaaaacccaagctgcaca 6086
Query: 583 aaagac 588
||||||
Sbjct: 6085 aaagac 6080
>ref|XM_468556.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 5910
Score = 486 bits (245), Expect = e-135
Identities = 470/546 (86%)
Strand = Plus / Minus
Query: 43 ggctcctgctctttttcccaccatgactcccagcttttctctggtgccacaccaatacct 102
|||||||||||||| ||||||||||||||||| |||||||| |||| |||||||||||
Sbjct: 5303 ggctcctgctctttctcccaccatgactcccaacttttctccggtggtacaccaatacca 5244
Query: 103 ccacgattgctgatccacttgtgccaatcagtccagtcatccacaatcttctgccactca 162
||||| |||||||||||||| | |||||||||||| |||||||||||||||||||||||
Sbjct: 5243 ccacggttgctgatccacttattccaatcagtccaatcatccacaatcttctgccactcg 5184
Query: 163 aatccagaaggattgaacaggaatggtgcaaagagccaagtgcccaccatgaaccacatg 222
|| ||||||||||| || |||||||||||||||||||| || | ||||| ||||||||
Sbjct: 5183 aacccagaaggattaaataggaatggtgcaaagagccaggttacaaccataaaccacatc 5124
Query: 223 gatacggtgatgaagatgtaagttatagcccctctatatgactgaccaaatatttcatac 282
|| | || ||||||||||| | ||||| |||| |||||| || ||||| |||||||||
Sbjct: 5123 gaaaatgtaatgaagatgtacgcgatagctcctcgatatgattgcccaaagatttcatac 5064
Query: 283 acaactagtagaatcatcagctcaaggcccttgacaaaatggctgcgggaataaagtcga 342
|||| ||| | ||||| || ||||| |||||||||||||||||||| || || ||||||
Sbjct: 5063 acaattagcaaaatcagcaactcaatacccttgacaaaatggctgcgtgagtatagtcga 5004
Query: 343 tagttctcagcaaatttggcatggaacaccacaaacccacgtccagtggctctgtattcc 402
|||||||| |||||||||||||||||||||||||| ||||| ||||| ||||| || ||
Sbjct: 5003 tagttctccgcaaatttggcatggaacaccacaaatccacgcccagtagctctatactcg 4944
Query: 403 gctcctccatggagtaacgtccttccgtagtagtgagtttttgttcccaacgagaatgtg 462
|||||||||||||| | ||| |||| |||||||||||||| || || | ||||||||
Sbjct: 4943 gctcctccatggagcagcgttgttccatagtagtgagttttggtcccgagagagaatgta 4884
Query: 463 aagaaaacagaggccaactgaagctgcatcagtataaaatcactcaatgcagttctgaat 522
||||||||||| || ||||| ||||||||||||| ||| || |||||||| ||||| |||
Sbjct: 4883 aagaaaacagatgctaactgcagctgcatcagtacaaagtcgctcaatgcggttctaaat 4824
Query: 523 cctctctccaaaccgatttccatcatcatgggcagcgccatcaaaaatccangnngcaca 582
|||||||||| ||| |||||||||||||| |||| |||||||||||| ||| | |||||
Sbjct: 4823 cctctctccagaccaatttccatcatcataggcaacgccatcaaaaacccaagctgcaca 4764
Query: 583 aaagac 588
||||||
Sbjct: 4763 aaagac 4758
>ref|NT_107182.1| Oryza sativa (japonica cultivar-group)
Length = 1785023
Score = 486 bits (245), Expect = e-135
Identities = 470/546 (86%)
Strand = Plus / Minus
Query: 43 ggctcctgctctttttcccaccatgactcccagcttttctctggtgccacaccaatacct 102
|||||||||||||| ||||||||||||||||| |||||||| |||| |||||||||||
Sbjct: 1656828 ggctcctgctctttctcccaccatgactcccaacttttctccggtggtacaccaatacca 1656769
Query: 103 ccacgattgctgatccacttgtgccaatcagtccagtcatccacaatcttctgccactca 162
||||| |||||||||||||| | |||||||||||| |||||||||||||||||||||||
Sbjct: 1656768 ccacggttgctgatccacttattccaatcagtccaatcatccacaatcttctgccactcg 1656709
Query: 163 aatccagaaggattgaacaggaatggtgcaaagagccaagtgcccaccatgaaccacatg 222
|| ||||||||||| || |||||||||||||||||||| || | ||||| ||||||||
Sbjct: 1656708 aacccagaaggattaaataggaatggtgcaaagagccaggttacaaccataaaccacatc 1656649
Query: 223 gatacggtgatgaagatgtaagttatagcccctctatatgactgaccaaatatttcatac 282
|| | || ||||||||||| | ||||| |||| |||||| || ||||| |||||||||
Sbjct: 1656648 gaaaatgtaatgaagatgtacgcgatagctcctcgatatgattgcccaaagatttcatac 1656589
Query: 283 acaactagtagaatcatcagctcaaggcccttgacaaaatggctgcgggaataaagtcga 342
|||| ||| | ||||| || ||||| |||||||||||||||||||| || || ||||||
Sbjct: 1656588 acaattagcaaaatcagcaactcaatacccttgacaaaatggctgcgtgagtatagtcga 1656529
Query: 343 tagttctcagcaaatttggcatggaacaccacaaacccacgtccagtggctctgtattcc 402
|||||||| |||||||||||||||||||||||||| ||||| ||||| ||||| || ||
Sbjct: 1656528 tagttctccgcaaatttggcatggaacaccacaaatccacgcccagtagctctatactcg 1656469
Query: 403 gctcctccatggagtaacgtccttccgtagtagtgagtttttgttcccaacgagaatgtg 462
|||||||||||||| | ||| |||| |||||||||||||| || || | ||||||||
Sbjct: 1656468 gctcctccatggagcagcgttgttccatagtagtgagttttggtcccgagagagaatgta 1656409
Query: 463 aagaaaacagaggccaactgaagctgcatcagtataaaatcactcaatgcagttctgaat 522
||||||||||| || ||||| ||||||||||||| ||| || |||||||| ||||| |||
Sbjct: 1656408 aagaaaacagatgctaactgcagctgcatcagtacaaagtcgctcaatgcggttctaaat 1656349
Query: 523 cctctctccaaaccgatttccatcatcatgggcagcgccatcaaaaatccangnngcaca 582
|||||||||| ||| |||||||||||||| |||| |||||||||||| ||| | |||||
Sbjct: 1656348 cctctctccagaccaatttccatcatcataggcaacgccatcaaaaacccaagctgcaca 1656289
Query: 583 aaagac 588
||||||
Sbjct: 1656288 aaagac 1656283
>gb|CH401170.1| Oryza sativa (japonica cultivar-group) chromosome 2 scaffold000007 genomic
scaffold, whole genome shotgun sequence
Length = 22563205
Score = 486 bits (245), Expect = e-135
Identities = 470/546 (86%)
Strand = Plus / Minus
Query: 43 ggctcctgctctttttcccaccatgactcccagcttttctctggtgccacaccaatacct 102
|||||||||||||| ||||||||||||||||| |||||||| |||| |||||||||||
Sbjct: 22450734 ggctcctgctctttctcccaccatgactcccaacttttctccggtggtacaccaatacca 22450675
Query: 103 ccacgattgctgatccacttgtgccaatcagtccagtcatccacaatcttctgccactca 162
||||| |||||||||||||| | |||||||||||| |||||||||||||||||||||||
Sbjct: 22450674 ccacggttgctgatccacttattccaatcagtccaatcatccacaatcttctgccactcg 22450615
Query: 163 aatccagaaggattgaacaggaatggtgcaaagagccaagtgcccaccatgaaccacatg 222
|| ||||||||||| || |||||||||||||||||||| || | ||||| ||||||||
Sbjct: 22450614 aacccagaaggattaaataggaatggtgcaaagagccaggttacaaccataaaccacatc 22450555
Query: 223 gatacggtgatgaagatgtaagttatagcccctctatatgactgaccaaatatttcatac 282
|| | || ||||||||||| | ||||| |||| |||||| || ||||| |||||||||
Sbjct: 22450554 gaaaatgtaatgaagatgtacgcgatagctcctcgatatgattgcccaaagatttcatac 22450495
Query: 283 acaactagtagaatcatcagctcaaggcccttgacaaaatggctgcgggaataaagtcga 342
|||| ||| | ||||| || ||||| |||||||||||||||||||| || || ||||||
Sbjct: 22450494 acaattagcaaaatcagcaactcaatacccttgacaaaatggctgcgtgagtatagtcga 22450435
Query: 343 tagttctcagcaaatttggcatggaacaccacaaacccacgtccagtggctctgtattcc 402
|||||||| |||||||||||||||||||||||||| ||||| ||||| ||||| || ||
Sbjct: 22450434 tagttctccgcaaatttggcatggaacaccacaaatccacgcccagtagctctatactcg 22450375
Query: 403 gctcctccatggagtaacgtccttccgtagtagtgagtttttgttcccaacgagaatgtg 462
|||||||||||||| | ||| |||| |||||||||||||| || || | ||||||||
Sbjct: 22450374 gctcctccatggagcagcgttgttccatagtagtgagttttggtcccgagagagaatgta 22450315
Query: 463 aagaaaacagaggccaactgaagctgcatcagtataaaatcactcaatgcagttctgaat 522
||||||||||| || ||||| ||||||||||||| ||| || |||||||| ||||| |||
Sbjct: 22450314 aagaaaacagatgctaactgcagctgcatcagtacaaagtcgctcaatgcggttctaaat 22450255
Query: 523 cctctctccaaaccgatttccatcatcatgggcagcgccatcaaaaatccangnngcaca 582
|||||||||| ||| |||||||||||||| |||| |||||||||||| ||| | |||||
Sbjct: 22450254 cctctctccagaccaatttccatcatcataggcaacgccatcaaaaacccaagctgcaca 22450195
Query: 583 aaagac 588
||||||
Sbjct: 22450194 aaagac 22450189
>gb|CM000139.1| Oryza sativa (japonica cultivar-group) chromosome 2, whole genome shotgun
sequence
Length = 36016269
Score = 486 bits (245), Expect = e-135
Identities = 470/546 (86%)
Strand = Plus / Minus
Query: 43 ggctcctgctctttttcccaccatgactcccagcttttctctggtgccacaccaatacct 102
|||||||||||||| ||||||||||||||||| |||||||| |||| |||||||||||
Sbjct: 35903798 ggctcctgctctttctcccaccatgactcccaacttttctccggtggtacaccaatacca 35903739
Query: 103 ccacgattgctgatccacttgtgccaatcagtccagtcatccacaatcttctgccactca 162
||||| |||||||||||||| | |||||||||||| |||||||||||||||||||||||
Sbjct: 35903738 ccacggttgctgatccacttattccaatcagtccaatcatccacaatcttctgccactcg 35903679
Query: 163 aatccagaaggattgaacaggaatggtgcaaagagccaagtgcccaccatgaaccacatg 222
|| ||||||||||| || |||||||||||||||||||| || | ||||| ||||||||
Sbjct: 35903678 aacccagaaggattaaataggaatggtgcaaagagccaggttacaaccataaaccacatc 35903619
Query: 223 gatacggtgatgaagatgtaagttatagcccctctatatgactgaccaaatatttcatac 282
|| | || ||||||||||| | ||||| |||| |||||| || ||||| |||||||||
Sbjct: 35903618 gaaaatgtaatgaagatgtacgcgatagctcctcgatatgattgcccaaagatttcatac 35903559
Query: 283 acaactagtagaatcatcagctcaaggcccttgacaaaatggctgcgggaataaagtcga 342
|||| ||| | ||||| || ||||| |||||||||||||||||||| || || ||||||
Sbjct: 35903558 acaattagcaaaatcagcaactcaatacccttgacaaaatggctgcgtgagtatagtcga 35903499
Query: 343 tagttctcagcaaatttggcatggaacaccacaaacccacgtccagtggctctgtattcc 402
|||||||| |||||||||||||||||||||||||| ||||| ||||| ||||| || ||
Sbjct: 35903498 tagttctccgcaaatttggcatggaacaccacaaatccacgcccagtagctctatactcg 35903439
Query: 403 gctcctccatggagtaacgtccttccgtagtagtgagtttttgttcccaacgagaatgtg 462
|||||||||||||| | ||| |||| |||||||||||||| || || | ||||||||
Sbjct: 35903438 gctcctccatggagcagcgttgttccatagtagtgagttttggtcccgagagagaatgta 35903379
Query: 463 aagaaaacagaggccaactgaagctgcatcagtataaaatcactcaatgcagttctgaat 522
||||||||||| || ||||| ||||||||||||| ||| || |||||||| ||||| |||
Sbjct: 35903378 aagaaaacagatgctaactgcagctgcatcagtacaaagtcgctcaatgcggttctaaat 35903319
Query: 523 cctctctccaaaccgatttccatcatcatgggcagcgccatcaaaaatccangnngcaca 582
|||||||||| ||| |||||||||||||| |||| |||||||||||| ||| | |||||
Sbjct: 35903318 cctctctccagaccaatttccatcatcataggcaacgccatcaaaaacccaagctgcaca 35903259
Query: 583 aaagac 588
||||||
Sbjct: 35903258 aaagac 35903253
Score = 65.9 bits (33), Expect = 3e-008
Identities = 66/77 (85%)
Strand = Plus / Minus
Query: 433 tagtgagtttttgttcccaacgagaatgtgaagaaaacagaggccaactgaagctgcatc 492
||||||| ||||||||| | ||||||||||||||||| || |||||||| || |||||
Sbjct: 8448112 tagtgagcttttgttccaagagagaatgtgaagaaaactgaagccaactgcagttgcatg 8448053
Query: 493 agtataaaatcactcaa 509
|| ||||| ||||||||
Sbjct: 8448052 aggataaagtcactcaa 8448036
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
sequence
Length = 35954743
Score = 486 bits (245), Expect = e-135
Identities = 470/546 (86%)
Strand = Plus / Minus
Query: 43 ggctcctgctctttttcccaccatgactcccagcttttctctggtgccacaccaatacct 102
|||||||||||||| ||||||||||||||||| |||||||| |||| |||||||||||
Sbjct: 35821555 ggctcctgctctttctcccaccatgactcccaacttttctccggtggtacaccaatacca 35821496
Query: 103 ccacgattgctgatccacttgtgccaatcagtccagtcatccacaatcttctgccactca 162
||||| |||||||||||||| | |||||||||||| |||||||||||||||||||||||
Sbjct: 35821495 ccacggttgctgatccacttattccaatcagtccaatcatccacaatcttctgccactcg 35821436
Query: 163 aatccagaaggattgaacaggaatggtgcaaagagccaagtgcccaccatgaaccacatg 222
|| ||||||||||| || |||||||||||||||||||| || | ||||| ||||||||
Sbjct: 35821435 aacccagaaggattaaataggaatggtgcaaagagccaggttacaaccataaaccacatc 35821376
Query: 223 gatacggtgatgaagatgtaagttatagcccctctatatgactgaccaaatatttcatac 282
|| | || ||||||||||| | ||||| |||| |||||| || ||||| |||||||||
Sbjct: 35821375 gaaaatgtaatgaagatgtacgcgatagctcctcgatatgattgcccaaagatttcatac 35821316
Query: 283 acaactagtagaatcatcagctcaaggcccttgacaaaatggctgcgggaataaagtcga 342
|||| ||| | ||||| || ||||| |||||||||||||||||||| || || ||||||
Sbjct: 35821315 acaattagcaaaatcagcaactcaatacccttgacaaaatggctgcgtgagtatagtcga 35821256
Query: 343 tagttctcagcaaatttggcatggaacaccacaaacccacgtccagtggctctgtattcc 402
|||||||| |||||||||||||||||||||||||| ||||| ||||| ||||| || ||
Sbjct: 35821255 tagttctccgcaaatttggcatggaacaccacaaatccacgcccagtagctctatactcg 35821196
Query: 403 gctcctccatggagtaacgtccttccgtagtagtgagtttttgttcccaacgagaatgtg 462
|||||||||||||| | ||| |||| |||||||||||||| || || | ||||||||
Sbjct: 35821195 gctcctccatggagcagcgttgttccatagtagtgagttttggtcccgagagagaatgta 35821136
Query: 463 aagaaaacagaggccaactgaagctgcatcagtataaaatcactcaatgcagttctgaat 522
||||||||||| || ||||| ||||||||||||| ||| || |||||||| ||||| |||
Sbjct: 35821135 aagaaaacagatgctaactgcagctgcatcagtacaaagtcgctcaatgcggttctaaat 35821076
Query: 523 cctctctccaaaccgatttccatcatcatgggcagcgccatcaaaaatccangnngcaca 582
|||||||||| ||| |||||||||||||| |||| |||||||||||| ||| | |||||
Sbjct: 35821075 cctctctccagaccaatttccatcatcataggcaacgccatcaaaaacccaagctgcaca 35821016
Query: 583 aaagac 588
||||||
Sbjct: 35821015 aaagac 35821010
Score = 65.9 bits (33), Expect = 3e-008
Identities = 66/77 (85%)
Strand = Plus / Minus
Query: 433 tagtgagtttttgttcccaacgagaatgtgaagaaaacagaggccaactgaagctgcatc 492
||||||| ||||||||| | ||||||||||||||||| || |||||||| || |||||
Sbjct: 8314774 tagtgagcttttgttccaagagagaatgtgaagaaaactgaagccaactgcagttgcatg 8314715
Query: 493 agtataaaatcactcaa 509
|| ||||| ||||||||
Sbjct: 8314714 aggataaagtcactcaa 8314698
>gb|CB659583.1|CB659583 OSJNEc16L01.f OSJNEc Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEc16L01 5', mRNA sequence
Length = 827
Score = 392 bits (198), Expect = e-107
Identities = 396/463 (85%)
Strand = Plus / Minus
Query: 126 ccaatcagtccagtcatccacaatcttctgccactcaaatccagaaggattgaacaggaa 185
|||||||||||| ||||||||||||||||||||||| || ||||||||||| || |||||
Sbjct: 827 ccaatcagtccaatcatccacaatcttctgccactcgaacccagaaggattaaataggaa 768
Query: 186 tggtgcaaagagccaagtgcccaccatgaaccacatggatacggtgatgaagatgtaagt 245
||||||||||||||| || | ||||| |||||||| || | || ||||||||||| |
Sbjct: 767 tggtgcaaagagccaggttacaaccataaaccacatcgaaaatgtaatgaagatgtacgc 708
Query: 246 tatagcccctctatatgactgaccaaatatttcatacacaactagtagaatcatcagctc 305
||||| |||| |||||| || ||||| ||||||||||||| ||| | ||||| || |||
Sbjct: 707 gatagctcctcgatatgattgcccaaagatttcatacacaattagcaaaatcagcaactc 648
Query: 306 aaggcccttgacaaaatggctgcgggaataaagtcgatagttctcagcaaatttggcatg 365
|| |||||||||||||||||||| || || |||||||||||||| ||||||||||||||
Sbjct: 647 aatacccttgacaaaatggctgcgtgagtatagtcgatagttctccgcaaatttggcatg 588
Query: 366 gaacaccacaaacccacgtccagtggctctgtattccgctcctccatggagtaacgtcct 425
|||||||||||| ||||| ||||| ||||| || || |||||||||||||| | ||| |
Sbjct: 587 gaacaccacaaatccacgcccagtagctctatactcggctcctccatggagcagcgttgt 528
Query: 426 tccgtagtagtgagtttttgttcccaacgagaatgtgaagaaaacagaggccaactgaag 485
||| |||||||||||||| || || | |||||||| ||||||||||| || ||||| ||
Sbjct: 527 tccatagtagtgagttttggtcccgagagagaatgtaaagaaaacagatgctaactgcag 468
Query: 486 ctgcatcagtataaaatcactcaatgcagttctgaatcctctctccaaaccgatttccat 545
||||||||||| ||| || |||||||| ||||| ||||||||||||| ||| ||||||||
Sbjct: 467 ctgcatcagtacaaagtcgctcaatgcggttctaaatcctctctccagaccaatttccat 408
Query: 546 catcatgggcagcgccatcaaaaatccangnngcacaaaagac 588
|||||| |||| |||||||||||| ||| | |||||||||||
Sbjct: 407 catcataggcaacgccatcaaaaacccaagctgcacaaaagac 365
>dbj|AK105109.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-100-F07, full
insert sequence
Length = 1292
Score = 313 bits (158), Expect = 7e-083
Identities = 287/330 (86%)
Strand = Plus / Minus
Query: 43 ggctcctgctctttttcccaccatgactcccagcttttctctggtgccacaccaatacct 102
|||||||||||||| ||||||||||||||||| |||||||| |||| |||||||||||
Sbjct: 330 ggctcctgctctttctcccaccatgactcccaacttttctccggtggtacaccaatacca 271
Query: 103 ccacgattgctgatccacttgtgccaatcagtccagtcatccacaatcttctgccactca 162
||||| |||||||||||||| | |||||||||||| |||||||||||||||||||||||
Sbjct: 270 ccacggttgctgatccacttattccaatcagtccaatcatccacaatcttctgccactcg 211
Query: 163 aatccagaaggattgaacaggaatggtgcaaagagccaagtgcccaccatgaaccacatg 222
|| ||||||||||| || |||||||||||||||||||| || | ||||| ||||||||
Sbjct: 210 aacccagaaggattaaataggaatggtgcaaagagccaggttacaaccataaaccacatc 151
Query: 223 gatacggtgatgaagatgtaagttatagcccctctatatgactgaccaaatatttcatac 282
|| | || ||||||||||| | ||||| |||| |||||| || ||||| |||||||||
Sbjct: 150 gaaaatgtaatgaagatgtacgcgatagctcctcgatatgattgcccaaagatttcatac 91
Query: 283 acaactagtagaatcatcagctcaaggcccttgacaaaatggctgcgggaataaagtcga 342
|||| ||| | ||||| || ||||| |||||||||||||||||||| || || ||||||
Sbjct: 90 acaattagcaaaatcagcaactcaatacccttgacaaaatggctgcgtgagtatagtcga 31
Query: 343 tagttctcagcaaatttggcatggaacacc 372
|||||||| |||||||||||||||||||||
Sbjct: 30 tagttctccgcaaatttggcatggaacacc 1
>dbj|AG209903.1| Oryza sativa (japonica cultivar-group) DNA, clone:NE8518_0_502_1A,
3' flanking sequence of Tos17 insertion in rice strain
NE8518, genomic survey sequence
Length = 635
Score = 125 bits (63), Expect = 3e-026
Identities = 123/143 (86%)
Strand = Plus / Plus
Query: 58 tcccaccatgactcccagcttttctctggtgccacaccaatacctccacgattgctgatc 117
|||||||| || ||||| || || ||||||| ||| ||||| || |||||||||||||||
Sbjct: 258 tcccaccaggattcccaactcttgtctggtgacaccccaatgccaccacgattgctgatc 317
Query: 118 cacttgtgccaatcagtccagtcatccacaatcttctgccactcaaatccagaaggattg 177
||||| | |||||||| ||| ||||||||||| ||| |||||||||||| || ||||||
Sbjct: 318 cacttattccaatcagaccaatcatccacaattttcgtccactcaaatcccgatggattg 377
Query: 178 aacaggaatggtgcaaagagcca 200
|||||||| |||||||| |||||
Sbjct: 378 aacaggaagggtgcaaaaagcca 400
>dbj|AG212141.1| Oryza sativa (japonica cultivar-group) DNA, clone:NF7001_0_501_1A,
3' flanking sequence of Tos17 insertion in rice strain
NF7001, genomic survey sequence
Length = 582
Score = 125 bits (63), Expect = 3e-026
Identities = 123/143 (86%)
Strand = Plus / Plus
Query: 58 tcccaccatgactcccagcttttctctggtgccacaccaatacctccacgattgctgatc 117
|||||||| || ||||| || || ||||||| ||| ||||| || |||||||||||||||
Sbjct: 232 tcccaccaggattcccaactcttgtctggtgacaccccaatgccaccacgattgctgatc 291
Query: 118 cacttgtgccaatcagtccagtcatccacaatcttctgccactcaaatccagaaggattg 177
||||| | |||||||| ||| ||||||||||| ||| |||||||||||| || ||||||
Sbjct: 292 cacttattccaatcagaccaatcatccacaattttcgtccactcaaatcccgatggattg 351
Query: 178 aacaggaatggtgcaaagagcca 200
|||||||| |||||||| |||||
Sbjct: 352 aacaggaagggtgcaaaaagcca 374
>dbj|AG206969.1| Oryza sativa (japonica cultivar-group) DNA, clone:ND6058_0_401_1A,
3' flanking sequence of Tos17 insertion in rice strain
ND6058, genomic survey sequence
Length = 611
Score = 125 bits (63), Expect = 3e-026
Identities = 123/143 (86%)
Strand = Plus / Minus
Query: 58 tcccaccatgactcccagcttttctctggtgccacaccaatacctccacgattgctgatc 117
|||||||| || ||||| || || ||||||| ||| ||||| || |||||||||||||||
Sbjct: 308 tcccaccaggattcccaactcttgtctggtgacaccccaatgccaccacgattgctgatc 249
Query: 118 cacttgtgccaatcagtccagtcatccacaatcttctgccactcaaatccagaaggattg 177
||||| | |||||||| ||| ||||||||||| ||| |||||||||||| || ||||||
Sbjct: 248 cacttattccaatcagaccaatcatccacaattttcgtccactcaaatcccgatggattg 189
Query: 178 aacaggaatggtgcaaagagcca 200
|||||||| |||||||| |||||
Sbjct: 188 aacaggaagggtgcaaaaagcca 166
>dbj|AB157743.1| Oryza sativa (japonica cultivar-group) DNA, clone:T29631T, 3'
flanking sequence of Tos17 insertion in rice strain
NG2031, genomic survey sequence
Length = 515
Score = 125 bits (63), Expect = 3e-026
Identities = 123/143 (86%)
Strand = Plus / Plus
Query: 58 tcccaccatgactcccagcttttctctggtgccacaccaatacctccacgattgctgatc 117
|||||||| || ||||| || || ||||||| ||| ||||| || |||||||||||||||
Sbjct: 2 tcccaccaggattcccaactcttgtctggtgacaccccaatgccaccacgattgctgatc 61
Query: 118 cacttgtgccaatcagtccagtcatccacaatcttctgccactcaaatccagaaggattg 177
||||| | |||||||| ||| ||||||||||| ||| |||||||||||| || ||||||
Sbjct: 62 cacttattccaatcagaccaatcatccacaattttcgtccactcaaatcccgatggattg 121
Query: 178 aacaggaatggtgcaaagagcca 200
|||||||| |||||||| |||||
Sbjct: 122 aacaggaagggtgcaaaaagcca 144
Score = 44.1 bits (22), Expect = 0.099
Identities = 117/149 (78%)
Strand = Plus / Plus
Query: 292 agaatcatcagctcaaggcccttgacaaaatggctgcgggaataaagtcgatagttctca 351
||||||| || ||||| ||| || ||||| || ||||| |||||||| | || |||||
Sbjct: 236 agaatcaacaactcaatgcctttaacaaagtgactgcgagaataaagcctgtaattctct 295
Query: 352 gcaaatttggcatggaacaccacaaacccacgtccagtggctctgtattccgctcctcca 411
||||| || ||||| || || ||||| || | ||||| |||||||| | || ||||||
Sbjct: 296 gcaaacttagcatgaaanacaacaaagcccctaccagtagctctgtactgagcacctcca 355
Query: 412 tggagtaacgtccttccgtagtagtgagt 440
||||| ||| | | ||| |||||||||||
Sbjct: 356 tggagcaacattcgtccatagtagtgagt 384
>gb|CB662166.1|CB662166 OSJNEd05O23.f OSJNEd Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEd05O23 5', mRNA sequence
Length = 824
Score = 125 bits (63), Expect = 3e-026
Identities = 123/143 (86%)
Strand = Plus / Minus
Query: 58 tcccaccatgactcccagcttttctctggtgccacaccaatacctccacgattgctgatc 117
|||||||| || ||||| || || ||||||| ||| ||||| || |||||||||||||||
Sbjct: 334 tcccaccaggattcccaactcttgtctggtgacaccccaatgccaccacgattgctgatc 275
Query: 118 cacttgtgccaatcagtccagtcatccacaatcttctgccactcaaatccagaaggattg 177
||||| | |||||||| ||| ||||||||||| ||| |||||||||||| || ||||||
Sbjct: 274 cacttattccaatcagaccaatcatccacaattttcgtccactcaaatcccgatggattg 215
Query: 178 aacaggaatggtgcaaagagcca 200
|||||||| |||||||| |||||
Sbjct: 214 aacaggaagggtgcaaaaagcca 192
>gb|CB677902.1|CB677902 OSJNEe15F12.f OSJNEe Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEe15F12 5', mRNA sequence
Length = 775
Score = 125 bits (63), Expect = 3e-026
Identities = 123/143 (86%)
Strand = Plus / Minus
Query: 58 tcccaccatgactcccagcttttctctggtgccacaccaatacctccacgattgctgatc 117
|||||||| || ||||| || || ||||||| ||| ||||| || |||||||||||||||
Sbjct: 627 tcccaccaggattcccaactcttgtctggtgacaccccaatgccaccacgattgctgatc 568
Query: 118 cacttgtgccaatcagtccagtcatccacaatcttctgccactcaaatccagaaggattg 177
||||| | |||||||| ||| ||||||||||| ||| |||||||||||| || ||||||
Sbjct: 567 cacttattccaatcagaccaatcatccacaattttcgtccactcaaatcccgatggattg 508
Query: 178 aacaggaatggtgcaaagagcca 200
|||||||| |||||||| |||||
Sbjct: 507 aacaggaagggtgcaaaaagcca 485
Score = 48.1 bits (24), Expect = 0.006
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 538 atttccatcatcatgggcagcgccatca 565
|||||||||||||||||||| |||||||
Sbjct: 147 atttccatcatcatgggcagggccatca 120
Score = 42.1 bits (21), Expect = 0.39
Identities = 117/149 (78%)
Strand = Plus / Minus
Query: 292 agaatcatcagctcaaggcccttgacaaaatggctgcgggaataaagtcgatagttctca 351
||||||| || ||||| ||| || ||||| || ||||| |||||||| | || |||||
Sbjct: 393 agaatcaacaactcaatgcctttaacaaagtgactgcgagaataaagcctgtaattctct 334
Query: 352 gcaaatttggcatggaacaccacaaacccacgtccagtggctctgtattccgctcctcca 411
||||| || ||||| || || ||||| || | ||||| |||||||| | || ||||||
Sbjct: 333 gcaaacttagcatgaaagacaacaaagcccctaccagtagctctgtactgagcacctcca 274
Query: 412 tggagtaacgtccttccgtagtagtgagt 440
||||| ||| | | ||| |||||||||||
Sbjct: 273 tggagcaacattcgtccatagtagtgagt 245
>dbj|AK062279.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-100-C02, full
insert sequence
Length = 2219
Score = 125 bits (63), Expect = 3e-026
Identities = 123/143 (86%)
Strand = Plus / Minus
Query: 58 tcccaccatgactcccagcttttctctggtgccacaccaatacctccacgattgctgatc 117
|||||||| || ||||| || || ||||||| ||| ||||| || |||||||||||||||
Sbjct: 1257 tcccaccaggattcccaactcttgtctggtgacaccccaatgccaccacgattgctgatc 1198
Query: 118 cacttgtgccaatcagtccagtcatccacaatcttctgccactcaaatccagaaggattg 177
||||| | |||||||| ||| ||||||||||| ||| |||||||||||| || ||||||
Sbjct: 1197 cacttattccaatcagaccaatcatccacaattttcgtccactcaaatcccgatggattg 1138
Query: 178 aacaggaatggtgcaaagagcca 200
|||||||| |||||||| |||||
Sbjct: 1137 aacaggaagggtgcaaaaagcca 1115
Score = 48.1 bits (24), Expect = 0.006
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 538 atttccatcatcatgggcagcgccatca 565
|||||||||||||||||||| |||||||
Sbjct: 777 atttccatcatcatgggcagggccatca 750
Score = 42.1 bits (21), Expect = 0.39
Identities = 117/149 (78%)
Strand = Plus / Minus
Query: 292 agaatcatcagctcaaggcccttgacaaaatggctgcgggaataaagtcgatagttctca 351
||||||| || ||||| ||| || ||||| || ||||| |||||||| | || |||||
Sbjct: 1023 agaatcaacaactcaatgcctttaacaaagtgactgcgagaataaagcctgtaattctct 964
Query: 352 gcaaatttggcatggaacaccacaaacccacgtccagtggctctgtattccgctcctcca 411
||||| || ||||| || || ||||| || | ||||| |||||||| | || ||||||
Sbjct: 963 gcaaacttagcatgaaagacaacaaagcccctaccagtagctctgtactgagcacctcca 904
Query: 412 tggagtaacgtccttccgtagtagtgagt 440
||||| ||| | | ||| |||||||||||
Sbjct: 903 tggagcaacattcgtccatagtagtgagt 875
>gb|AC104427.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1015F07,
complete sequence
Length = 117612
Score = 125 bits (63), Expect = 3e-026
Identities = 123/143 (86%)
Strand = Plus / Plus
Query: 58 tcccaccatgactcccagcttttctctggtgccacaccaatacctccacgattgctgatc 117
|||||||| || ||||| || || ||||||| ||| ||||| || |||||||||||||||
Sbjct: 100414 tcccaccaggattcccaactcttgtctggtgacaccccaatgccaccacgattgctgatc 100473
Query: 118 cacttgtgccaatcagtccagtcatccacaatcttctgccactcaaatccagaaggattg 177
||||| | |||||||| ||| ||||||||||| ||| |||||||||||| || ||||||
Sbjct: 100474 cacttattccaatcagaccaatcatccacaattttcgtccactcaaatcccgatggattg 100533
Query: 178 aacaggaatggtgcaaagagcca 200
|||||||| |||||||| |||||
Sbjct: 100534 aacaggaagggtgcaaaaagcca 100556
Score = 48.1 bits (24), Expect = 0.006
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 538 atttccatcatcatgggcagcgccatca 565
|||||||||||||||||||| |||||||
Sbjct: 100894 atttccatcatcatgggcagggccatca 100921
Score = 42.1 bits (21), Expect = 0.39
Identities = 117/149 (78%)
Strand = Plus / Plus
Query: 292 agaatcatcagctcaaggcccttgacaaaatggctgcgggaataaagtcgatagttctca 351
||||||| || ||||| ||| || ||||| || ||||| |||||||| | || |||||
Sbjct: 100648 agaatcaacaactcaatgcctttaacaaagtgactgcgagaataaagcctgtaattctct 100707
Query: 352 gcaaatttggcatggaacaccacaaacccacgtccagtggctctgtattccgctcctcca 411
||||| || ||||| || || ||||| || | ||||| |||||||| | || ||||||
Sbjct: 100708 gcaaacttagcatgaaagacaacaaagcccctaccagtagctctgtactgagcacctcca 100767
Query: 412 tggagtaacgtccttccgtagtagtgagt 440
||||| ||| | | ||| |||||||||||
Sbjct: 100768 tggagcaacattcgtccatagtagtgagt 100796
>gb|AC144426.1| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJA1015F07,
complete sequence
Length = 127098
Score = 125 bits (63), Expect = 3e-026
Identities = 123/143 (86%)
Strand = Plus / Plus
Query: 58 tcccaccatgactcccagcttttctctggtgccacaccaatacctccacgattgctgatc 117
|||||||| || ||||| || || ||||||| ||| ||||| || |||||||||||||||
Sbjct: 42802 tcccaccaggattcccaactcttgtctggtgacaccccaatgccaccacgattgctgatc 42861
Query: 118 cacttgtgccaatcagtccagtcatccacaatcttctgccactcaaatccagaaggattg 177
||||| | |||||||| ||| ||||||||||| ||| |||||||||||| || ||||||
Sbjct: 42862 cacttattccaatcagaccaatcatccacaattttcgtccactcaaatcccgatggattg 42921
Query: 178 aacaggaatggtgcaaagagcca 200
|||||||| |||||||| |||||
Sbjct: 42922 aacaggaagggtgcaaaaagcca 42944
Score = 48.1 bits (24), Expect = 0.006
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 538 atttccatcatcatgggcagcgccatca 565
|||||||||||||||||||| |||||||
Sbjct: 43282 atttccatcatcatgggcagggccatca 43309
Score = 42.1 bits (21), Expect = 0.39
Identities = 117/149 (78%)
Strand = Plus / Plus
Query: 292 agaatcatcagctcaaggcccttgacaaaatggctgcgggaataaagtcgatagttctca 351
||||||| || ||||| ||| || ||||| || ||||| |||||||| | || |||||
Sbjct: 43036 agaatcaacaactcaatgcctttaacaaagtgactgcgagaataaagcctgtaattctct 43095
Query: 352 gcaaatttggcatggaacaccacaaacccacgtccagtggctctgtattccgctcctcca 411
||||| || ||||| || || ||||| || | ||||| |||||||| | || ||||||
Sbjct: 43096 gcaaacttagcatgaaagacaacaaagcccctaccagtagctctgtactgagcacctcca 43155
Query: 412 tggagtaacgtccttccgtagtagtgagt 440
||||| ||| | | ||| |||||||||||
Sbjct: 43156 tggagcaacattcgtccatagtagtgagt 43184
>dbj|AK105008.2| Oryza sativa (japonica cultivar-group) cDNA clone:001-006-G07, full
insert sequence
Length = 1992
Score = 125 bits (63), Expect = 3e-026
Identities = 123/143 (86%)
Strand = Plus / Minus
Query: 58 tcccaccatgactcccagcttttctctggtgccacaccaatacctccacgattgctgatc 117
|||||||| || ||||| || || ||||||| ||| ||||| || |||||||||||||||
Sbjct: 958 tcccaccaggattcccaactcttgtctggtgacaccccaatgccaccacgattgctgatc 899
Query: 118 cacttgtgccaatcagtccagtcatccacaatcttctgccactcaaatccagaaggattg 177
||||| | |||||||| ||| ||||||||||| ||| |||||||||||| || ||||||
Sbjct: 898 cacttattccaatcagaccaatcatccacaattttcgtccactcaaatcccgatggattg 839
Query: 178 aacaggaatggtgcaaagagcca 200
|||||||| |||||||| |||||
Sbjct: 838 aacaggaagggtgcaaaaagcca 816
Score = 48.1 bits (24), Expect = 0.006
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 538 atttccatcatcatgggcagcgccatca 565
|||||||||||||||||||| |||||||
Sbjct: 478 atttccatcatcatgggcagggccatca 451
Score = 42.1 bits (21), Expect = 0.39
Identities = 117/149 (78%)
Strand = Plus / Minus
Query: 292 agaatcatcagctcaaggcccttgacaaaatggctgcgggaataaagtcgatagttctca 351
||||||| || ||||| ||| || ||||| || ||||| |||||||| | || |||||
Sbjct: 724 agaatcaacaactcaatgcctttaacaaagtgactgcgagaataaagcctgtaattctct 665
Query: 352 gcaaatttggcatggaacaccacaaacccacgtccagtggctctgtattccgctcctcca 411
||||| || ||||| || || ||||| || | ||||| |||||||| | || ||||||
Sbjct: 664 gcaaacttagcatgaaagacaacaaagcccctaccagtagctctgtactgagcacctcca 605
Query: 412 tggagtaacgtccttccgtagtagtgagt 440
||||| ||| | | ||| |||||||||||
Sbjct: 604 tggagcaacattcgtccatagtagtgagt 576
>gb|AACV01005795.1| Oryza sativa (japonica cultivar-group) chromosome 3 Ctg005795, whole
genome shotgun sequence
Length = 23395
Score = 125 bits (63), Expect = 3e-026
Identities = 123/143 (86%)
Strand = Plus / Minus
Query: 58 tcccaccatgactcccagcttttctctggtgccacaccaatacctccacgattgctgatc 117
|||||||| || ||||| || || ||||||| ||| ||||| || |||||||||||||||
Sbjct: 20632 tcccaccaggattcccaactcttgtctggtgacaccccaatgccaccacgattgctgatc 20573
Query: 118 cacttgtgccaatcagtccagtcatccacaatcttctgccactcaaatccagaaggattg 177
||||| | |||||||| ||| ||||||||||| ||| |||||||||||| || ||||||
Sbjct: 20572 cacttattccaatcagaccaatcatccacaattttcgtccactcaaatcccgatggattg 20513
Query: 178 aacaggaatggtgcaaagagcca 200
|||||||| |||||||| |||||
Sbjct: 20512 aacaggaagggtgcaaaaagcca 20490
Score = 48.1 bits (24), Expect = 0.006
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 538 atttccatcatcatgggcagcgccatca 565
|||||||||||||||||||| |||||||
Sbjct: 20152 atttccatcatcatgggcagggccatca 20125
Score = 42.1 bits (21), Expect = 0.39
Identities = 117/149 (78%)
Strand = Plus / Minus
Query: 292 agaatcatcagctcaaggcccttgacaaaatggctgcgggaataaagtcgatagttctca 351
||||||| || ||||| ||| || ||||| || ||||| |||||||| | || |||||
Sbjct: 20398 agaatcaacaactcaatgcctttaacaaagtgactgcgagaataaagcctgtaattctct 20339
Query: 352 gcaaatttggcatggaacaccacaaacccacgtccagtggctctgtattccgctcctcca 411
||||| || ||||| || || ||||| || | ||||| |||||||| | || ||||||
Sbjct: 20338 gcaaacttagcatgaaagacaacaaagcccctaccagtagctctgtactgagcacctcca 20279
Query: 412 tggagtaacgtccttccgtagtagtgagt 440
||||| ||| | | ||| |||||||||||
Sbjct: 20278 tggagcaacattcgtccatagtagtgagt 20250
>ref|NM_187591.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 4929
Score = 125 bits (63), Expect = 3e-026
Identities = 123/143 (86%)
Strand = Plus / Minus
Query: 58 tcccaccatgactcccagcttttctctggtgccacaccaatacctccacgattgctgatc 117
|||||||| || ||||| || || ||||||| ||| ||||| || |||||||||||||||
Sbjct: 4304 tcccaccaggattcccaactcttgtctggtgacaccccaatgccaccacgattgctgatc 4245
Query: 118 cacttgtgccaatcagtccagtcatccacaatcttctgccactcaaatccagaaggattg 177
||||| | |||||||| ||| ||||||||||| ||| |||||||||||| || ||||||
Sbjct: 4244 cacttattccaatcagaccaatcatccacaattttcgtccactcaaatcccgatggattg 4185
Query: 178 aacaggaatggtgcaaagagcca 200
|||||||| |||||||| |||||
Sbjct: 4184 aacaggaagggtgcaaaaagcca 4162
Score = 48.1 bits (24), Expect = 0.006
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 538 atttccatcatcatgggcagcgccatca 565
|||||||||||||||||||| |||||||
Sbjct: 3824 atttccatcatcatgggcagggccatca 3797
Score = 42.1 bits (21), Expect = 0.39
Identities = 117/149 (78%)
Strand = Plus / Minus
Query: 292 agaatcatcagctcaaggcccttgacaaaatggctgcgggaataaagtcgatagttctca 351
||||||| || ||||| ||| || ||||| || ||||| |||||||| | || |||||
Sbjct: 4070 agaatcaacaactcaatgcctttaacaaagtgactgcgagaataaagcctgtaattctct 4011
Query: 352 gcaaatttggcatggaacaccacaaacccacgtccagtggctctgtattccgctcctcca 411
||||| || ||||| || || ||||| || | ||||| |||||||| | || ||||||
Sbjct: 4010 gcaaacttagcatgaaagacaacaaagcccctaccagtagctctgtactgagcacctcca 3951
Query: 412 tggagtaacgtccttccgtagtagtgagt 440
||||| ||| | | ||| |||||||||||
Sbjct: 3950 tggagcaacattcgtccatagtagtgagt 3922
>ref|NT_107183.1| Oryza sativa (japonica cultivar-group)
Length = 1680144
Score = 125 bits (63), Expect = 3e-026
Identities = 123/143 (86%)
Strand = Plus / Plus
Query: 58 tcccaccatgactcccagcttttctctggtgccacaccaatacctccacgattgctgatc 117
|||||||| || ||||| || || ||||||| ||| ||||| || |||||||||||||||
Sbjct: 1563239 tcccaccaggattcccaactcttgtctggtgacaccccaatgccaccacgattgctgatc 1563298
Query: 118 cacttgtgccaatcagtccagtcatccacaatcttctgccactcaaatccagaaggattg 177
||||| | |||||||| ||| ||||||||||| ||| |||||||||||| || ||||||
Sbjct: 1563299 cacttattccaatcagaccaatcatccacaattttcgtccactcaaatcccgatggattg 1563358
Query: 178 aacaggaatggtgcaaagagcca 200
|||||||| |||||||| |||||
Sbjct: 1563359 aacaggaagggtgcaaaaagcca 1563381
Score = 50.1 bits (25), Expect = 0.002
Identities = 46/53 (86%)
Strand = Plus / Minus
Query: 150 cttctgccactcaaatccagaaggattgaacaggaatggtgcaaagagccaag 202
||||||||| ||||||||||| |||||||| | | |||| ||||| |||||||
Sbjct: 1052724 cttctgccattcaaatccagatggattgaatatgtatggagcaaaaagccaag 1052672
Score = 50.1 bits (25), Expect = 0.002
Identities = 40/45 (88%)
Strand = Plus / Minus
Query: 316 acaaaatggctgcgggaataaagtcgatagttctcagcaaatttg 360
||||||||||| | ||||||||| || ||||| ||||||||||||
Sbjct: 1052483 acaaaatggctcctggaataaagacggtagttttcagcaaatttg 1052439
Score = 48.1 bits (24), Expect = 0.006
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 538 atttccatcatcatgggcagcgccatca 565
|||||||||||||||||||| |||||||
Sbjct: 1563719 atttccatcatcatgggcagggccatca 1563746
Score = 42.1 bits (21), Expect = 0.39
Identities = 117/149 (78%)
Strand = Plus / Plus
Query: 292 agaatcatcagctcaaggcccttgacaaaatggctgcgggaataaagtcgatagttctca 351
||||||| || ||||| ||| || ||||| || ||||| |||||||| | || |||||
Sbjct: 1563473 agaatcaacaactcaatgcctttaacaaagtgactgcgagaataaagcctgtaattctct 1563532
Query: 352 gcaaatttggcatggaacaccacaaacccacgtccagtggctctgtattccgctcctcca 411
||||| || ||||| || || ||||| || | ||||| |||||||| | || ||||||
Sbjct: 1563533 gcaaacttagcatgaaagacaacaaagcccctaccagtagctctgtactgagcacctcca 1563592
Query: 412 tggagtaacgtccttccgtagtagtgagt 440
||||| ||| | | ||| |||||||||||
Sbjct: 1563593 tggagcaacattcgtccatagtagtgagt 1563621
>gb|CH401173.1| Oryza sativa (japonica cultivar-group) chromosome 3 scaffold000010 genomic
scaffold, whole genome shotgun sequence
Length = 13858245
Score = 125 bits (63), Expect = 3e-026
Identities = 123/143 (86%)
Strand = Plus / Plus
Query: 58 tcccaccatgactcccagcttttctctggtgccacaccaatacctccacgattgctgatc 117
|||||||| || ||||| || || ||||||| ||| ||||| || |||||||||||||||
Sbjct: 1569295 tcccaccaggattcccaactcttgtctggtgacaccccaatgccaccacgattgctgatc 1569354
Query: 118 cacttgtgccaatcagtccagtcatccacaatcttctgccactcaaatccagaaggattg 177
||||| | |||||||| ||| ||||||||||| ||| |||||||||||| || ||||||
Sbjct: 1569355 cacttattccaatcagaccaatcatccacaattttcgtccactcaaatcccgatggattg 1569414
Query: 178 aacaggaatggtgcaaagagcca 200
|||||||| |||||||| |||||
Sbjct: 1569415 aacaggaagggtgcaaaaagcca 1569437
Score = 50.1 bits (25), Expect = 0.002
Identities = 46/53 (86%)
Strand = Plus / Minus
Query: 150 cttctgccactcaaatccagaaggattgaacaggaatggtgcaaagagccaag 202
||||||||| ||||||||||| |||||||| | | |||| ||||| |||||||
Sbjct: 1050903 cttctgccattcaaatccagatggattgaatatgtatggagcaaaaagccaag 1050851
Score = 50.1 bits (25), Expect = 0.002
Identities = 40/45 (88%)
Strand = Plus / Minus
Query: 316 acaaaatggctgcgggaataaagtcgatagttctcagcaaatttg 360
||||||||||| | ||||||||| || ||||| ||||||||||||
Sbjct: 1050662 acaaaatggctcctggaataaagacggtagttttcagcaaatttg 1050618
Score = 48.1 bits (24), Expect = 0.006
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 538 atttccatcatcatgggcagcgccatca 565
|||||||||||||||||||| |||||||
Sbjct: 1569775 atttccatcatcatgggcagggccatca 1569802
Score = 42.1 bits (21), Expect = 0.39
Identities = 117/149 (78%)
Strand = Plus / Plus
Query: 292 agaatcatcagctcaaggcccttgacaaaatggctgcgggaataaagtcgatagttctca 351
||||||| || ||||| ||| || ||||| || ||||| |||||||| | || |||||
Sbjct: 1569529 agaatcaacaactcaatgcctttaacaaagtgactgcgagaataaagcctgtaattctct 1569588
Query: 352 gcaaatttggcatggaacaccacaaacccacgtccagtggctctgtattccgctcctcca 411
||||| || ||||| || || ||||| || | ||||| |||||||| | || ||||||
Sbjct: 1569589 gcaaacttagcatgaaagacaacaaagcccctaccagtagctctgtactgagcacctcca 1569648
Query: 412 tggagtaacgtccttccgtagtagtgagt 440
||||| ||| | | ||| |||||||||||
Sbjct: 1569649 tggagcaacattcgtccatagtagtgagt 1569677
>gb|CM000140.1| Oryza sativa (japonica cultivar-group) chromosome 3, whole genome shotgun
sequence
Length = 37803064
Score = 125 bits (63), Expect = 3e-026
Identities = 123/143 (86%)
Strand = Plus / Plus
Query: 58 tcccaccatgactcccagcttttctctggtgccacaccaatacctccacgattgctgatc 117
|||||||| || ||||| || || ||||||| ||| ||||| || |||||||||||||||
Sbjct: 1761657 tcccaccaggattcccaactcttgtctggtgacaccccaatgccaccacgattgctgatc 1761716
Query: 118 cacttgtgccaatcagtccagtcatccacaatcttctgccactcaaatccagaaggattg 177
||||| | |||||||| ||| ||||||||||| ||| |||||||||||| || ||||||
Sbjct: 1761717 cacttattccaatcagaccaatcatccacaattttcgtccactcaaatcccgatggattg 1761776
Query: 178 aacaggaatggtgcaaagagcca 200
|||||||| |||||||| |||||
Sbjct: 1761777 aacaggaagggtgcaaaaagcca 1761799
Score = 50.1 bits (25), Expect = 0.002
Identities = 46/53 (86%)
Strand = Plus / Minus
Query: 150 cttctgccactcaaatccagaaggattgaacaggaatggtgcaaagagccaag 202
||||||||| ||||||||||| |||||||| | | |||| ||||| |||||||
Sbjct: 1243265 cttctgccattcaaatccagatggattgaatatgtatggagcaaaaagccaag 1243213
Score = 50.1 bits (25), Expect = 0.002
Identities = 40/45 (88%)
Strand = Plus / Minus
Query: 316 acaaaatggctgcgggaataaagtcgatagttctcagcaaatttg 360
||||||||||| | ||||||||| || ||||| ||||||||||||
Sbjct: 1243024 acaaaatggctcctggaataaagacggtagttttcagcaaatttg 1242980
Score = 48.1 bits (24), Expect = 0.006
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 538 atttccatcatcatgggcagcgccatca 565
|||||||||||||||||||| |||||||
Sbjct: 1762137 atttccatcatcatgggcagggccatca 1762164
Score = 42.1 bits (21), Expect = 0.39
Identities = 117/149 (78%)
Strand = Plus / Plus
Query: 292 agaatcatcagctcaaggcccttgacaaaatggctgcgggaataaagtcgatagttctca 351
||||||| || ||||| ||| || ||||| || ||||| |||||||| | || |||||
Sbjct: 1761891 agaatcaacaactcaatgcctttaacaaagtgactgcgagaataaagcctgtaattctct 1761950
Query: 352 gcaaatttggcatggaacaccacaaacccacgtccagtggctctgtattccgctcctcca 411
||||| || ||||| || || ||||| || | ||||| |||||||| | || ||||||
Sbjct: 1761951 gcaaacttagcatgaaagacaacaaagcccctaccagtagctctgtactgagcacctcca 1762010
Query: 412 tggagtaacgtccttccgtagtagtgagt 440
||||| ||| | | ||| |||||||||||
Sbjct: 1762011 tggagcaacattcgtccatagtagtgagt 1762039
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
sequence
Length = 36192742
Score = 125 bits (63), Expect = 3e-026
Identities = 123/143 (86%)
Strand = Plus / Plus
Query: 58 tcccaccatgactcccagcttttctctggtgccacaccaatacctccacgattgctgatc 117
|||||||| || ||||| || || ||||||| ||| ||||| || |||||||||||||||
Sbjct: 1563239 tcccaccaggattcccaactcttgtctggtgacaccccaatgccaccacgattgctgatc 1563298
Query: 118 cacttgtgccaatcagtccagtcatccacaatcttctgccactcaaatccagaaggattg 177
||||| | |||||||| ||| ||||||||||| ||| |||||||||||| || ||||||
Sbjct: 1563299 cacttattccaatcagaccaatcatccacaattttcgtccactcaaatcccgatggattg 1563358
Query: 178 aacaggaatggtgcaaagagcca 200
|||||||| |||||||| |||||
Sbjct: 1563359 aacaggaagggtgcaaaaagcca 1563381
Score = 50.1 bits (25), Expect = 0.002
Identities = 46/53 (86%)
Strand = Plus / Minus
Query: 150 cttctgccactcaaatccagaaggattgaacaggaatggtgcaaagagccaag 202
||||||||| ||||||||||| |||||||| | | |||| ||||| |||||||
Sbjct: 1052724 cttctgccattcaaatccagatggattgaatatgtatggagcaaaaagccaag 1052672
Score = 50.1 bits (25), Expect = 0.002
Identities = 40/45 (88%)
Strand = Plus / Minus
Query: 316 acaaaatggctgcgggaataaagtcgatagttctcagcaaatttg 360
||||||||||| | ||||||||| || ||||| ||||||||||||
Sbjct: 1052483 acaaaatggctcctggaataaagacggtagttttcagcaaatttg 1052439
Score = 48.1 bits (24), Expect = 0.006
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 538 atttccatcatcatgggcagcgccatca 565
|||||||||||||||||||| |||||||
Sbjct: 1563719 atttccatcatcatgggcagggccatca 1563746
Score = 42.1 bits (21), Expect = 0.39
Identities = 117/149 (78%)
Strand = Plus / Plus
Query: 292 agaatcatcagctcaaggcccttgacaaaatggctgcgggaataaagtcgatagttctca 351
||||||| || ||||| ||| || ||||| || ||||| |||||||| | || |||||
Sbjct: 1563473 agaatcaacaactcaatgcctttaacaaagtgactgcgagaataaagcctgtaattctct 1563532
Query: 352 gcaaatttggcatggaacaccacaaacccacgtccagtggctctgtattccgctcctcca 411
||||| || ||||| || || ||||| || | ||||| |||||||| | || ||||||
Sbjct: 1563533 gcaaacttagcatgaaagacaacaaagcccctaccagtagctctgtactgagcacctcca 1563592
Query: 412 tggagtaacgtccttccgtagtagtgagt 440
||||| ||| | | ||| |||||||||||
Sbjct: 1563593 tggagcaacattcgtccatagtagtgagt 1563621
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
Length = 36102668
Score = 125 bits (63), Expect = 3e-026
Identities = 123/143 (86%)
Strand = Plus / Plus
Query: 58 tcccaccatgactcccagcttttctctggtgccacaccaatacctccacgattgctgatc 117
|||||||| || ||||| || || ||||||| ||| ||||| || |||||||||||||||
Sbjct: 1563241 tcccaccaggattcccaactcttgtctggtgacaccccaatgccaccacgattgctgatc 1563300
Query: 118 cacttgtgccaatcagtccagtcatccacaatcttctgccactcaaatccagaaggattg 177
||||| | |||||||| ||| ||||||||||| ||| |||||||||||| || ||||||
Sbjct: 1563301 cacttattccaatcagaccaatcatccacaattttcgtccactcaaatcccgatggattg 1563360
Query: 178 aacaggaatggtgcaaagagcca 200
|||||||| |||||||| |||||
Sbjct: 1563361 aacaggaagggtgcaaaaagcca 1563383
Score = 50.1 bits (25), Expect = 0.002
Identities = 46/53 (86%)
Strand = Plus / Minus
Query: 150 cttctgccactcaaatccagaaggattgaacaggaatggtgcaaagagccaag 202
||||||||| ||||||||||| |||||||| | | |||| ||||| |||||||
Sbjct: 1052726 cttctgccattcaaatccagatggattgaatatgtatggagcaaaaagccaag 1052674
Score = 50.1 bits (25), Expect = 0.002
Identities = 40/45 (88%)
Strand = Plus / Minus
Query: 316 acaaaatggctgcgggaataaagtcgatagttctcagcaaatttg 360
||||||||||| | ||||||||| || ||||| ||||||||||||
Sbjct: 1052485 acaaaatggctcctggaataaagacggtagttttcagcaaatttg 1052441
Score = 48.1 bits (24), Expect = 0.006
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 538 atttccatcatcatgggcagcgccatca 565
|||||||||||||||||||| |||||||
Sbjct: 1563721 atttccatcatcatgggcagggccatca 1563748
Score = 42.1 bits (21), Expect = 0.39
Identities = 117/149 (78%)
Strand = Plus / Plus
Query: 292 agaatcatcagctcaaggcccttgacaaaatggctgcgggaataaagtcgatagttctca 351
||||||| || ||||| ||| || ||||| || ||||| |||||||| | || |||||
Sbjct: 1563475 agaatcaacaactcaatgcctttaacaaagtgactgcgagaataaagcctgtaattctct 1563534
Query: 352 gcaaatttggcatggaacaccacaaacccacgtccagtggctctgtattccgctcctcca 411
||||| || ||||| || || ||||| || | ||||| |||||||| | || ||||||
Sbjct: 1563535 gcaaacttagcatgaaagacaacaaagcccctaccagtagctctgtactgagcacctcca 1563594
Query: 412 tggagtaacgtccttccgtagtagtgagt 440
||||| ||| | | ||| |||||||||||
Sbjct: 1563595 tggagcaacattcgtccatagtagtgagt 1563623
>dbj|AG206827.1| Oryza sativa (japonica cultivar-group) DNA, clone:ND6025_0_505_1A,
3' flanking sequence of Tos17 insertion in rice strain
ND6025, genomic survey sequence
Length = 371
Score = 119 bits (60), Expect = 2e-024
Identities = 104/119 (87%)
Strand = Plus / Plus
Query: 82 tctggtgccacaccaatacctccacgattgctgatccacttgtgccaatcagtccagtca 141
||||||| ||| ||||| || |||||||||||||||||||| | |||||||| ||| |||
Sbjct: 12 tctggtgacacnccaatgccaccacgattgctgatccacttattccaatcagaccaatca 71
Query: 142 tccacaatcttctgccactcaaatccagaaggattgaacaggaatggtgcaaagagcca 200
|||||||| ||| |||||||||||| || |||||||||||||| |||||||| |||||
Sbjct: 72 tccacaattttcgtccactcaaatcccgatggattgaacaggaagggtgcaaaaagcca 130
>gb|CB642889.1|CB642889 OSJNEb03E21.f OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb03E21 5', mRNA sequence
Length = 734
Score = 109 bits (55), Expect = 2e-021
Identities = 94/107 (87%)
Strand = Plus / Minus
Query: 94 ccaatacctccacgattgctgatccacttgtgccaatcagtccagtcatccacaatcttc 153
||||| || |||||||||||||||||||| | |||||||| ||| ||||||||||| |||
Sbjct: 727 ccaatgccaccacgattgctgatccacttattccaatcagaccaatcatccacaattttc 668
Query: 154 tgccactcaaatccagaaggattgaacaggaatggtgcaaagagcca 200
|||||||||||| || |||||||||||||| |||||||| |||||
Sbjct: 667 gtccactcaaatcccgatggattgaacaggaagggtgcaaaaagcca 621
Score = 48.1 bits (24), Expect = 0.006
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 538 atttccatcatcatgggcagcgccatca 565
|||||||||||||||||||| |||||||
Sbjct: 283 atttccatcatcatgggcagggccatca 256
Score = 42.1 bits (21), Expect = 0.39
Identities = 117/149 (78%)
Strand = Plus / Minus
Query: 292 agaatcatcagctcaaggcccttgacaaaatggctgcgggaataaagtcgatagttctca 351
||||||| || ||||| ||| || ||||| || ||||| |||||||| | || |||||
Sbjct: 529 agaatcaacaactcaatgcctttaacaaagtgactgcgagaataaagcctgtaattctct 470
Query: 352 gcaaatttggcatggaacaccacaaacccacgtccagtggctctgtattccgctcctcca 411
||||| || ||||| || || ||||| || | ||||| |||||||| | || ||||||
Sbjct: 469 gcaaacttagcatgaaagacaacaaagcccctaccagtagctctgtactgagcacctcca 410
Query: 412 tggagtaacgtccttccgtagtagtgagt 440
||||| ||| | | ||| |||||||||||
Sbjct: 409 tggagcaacattcgtccatagtagtgagt 381
>gb|CB669058.1|CB669058 OSJNEe01E09.f OSJNEe Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEe01E09 5', mRNA sequence
Length = 668
Score = 101 bits (51), Expect = 5e-019
Identities = 102/119 (85%)
Strand = Plus / Minus
Query: 82 tctggtgccacaccaatacctccacgattgctgatccacttgtgccaatcagtccagtca 141
||||||| ||| ||||| || |||||||||||||||||||| | |||||||| ||| |||
Sbjct: 652 tctggtgacaccccaatgccaccacgattgctgatccacttattccaatcagaccaatca 593
Query: 142 tccacaatcttctgccactcaaatccagaaggattgaacaggaatggtgcaaagagcca 200
|||||||| || |||||||||||| || |||||||||| ||| |||||||| |||||
Sbjct: 592 tccacaattttggtccactcaaatcccgatggattgaacacgaagggtgcaaaaagcca 534
Score = 48.1 bits (24), Expect = 0.006
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 538 atttccatcatcatgggcagcgccatca 565
|||||||||||||||||||| |||||||
Sbjct: 196 atttccatcatcatgggcagggccatca 169
>dbj|AG209650.1| Oryza sativa (japonica cultivar-group) DNA, clone:NE7049_0_702_1A,
3' flanking sequence of Tos17 insertion in rice strain
NE7049, genomic survey sequence
Length = 613
Score = 81.8 bits (41), Expect = 5e-013
Identities = 109/132 (82%)
Strand = Plus / Minus
Query: 90 cacaccaatacctccacgattgctgatccacttgtgccaatcagtccagtcatccacaat 149
|||||||||||| ||||| ||| | ||||||||| ||| ||| ||||||||| || ||
Sbjct: 582 cacaccaataccaccacggttgntaatccacttgctccagtcatcccagtcatcaactat 523
Query: 150 cttctgccactcaaatccagaaggattgaacaggaatggtgcaaagagccaagtgcccac 209
|| ||||||||||| || || || ||||| |||||||||||||| ||||||||| ||
Sbjct: 522 tttttgccactcaaaccctgatgggttgaagaggaatggtgcaaacagccaagtgattac 463
Query: 210 catgaaccacat 221
|| |||||||||
Sbjct: 462 caggaaccacat 451
>dbj|AP003454.1| Oryza sativa (japonica cultivar-group) chromosome 6 clone P0499E08, ***
SEQUENCING IN PROGRESS ***
Length = 85150
Score = 79.8 bits (40), Expect = 2e-012
Identities = 109/132 (82%)
Strand = Plus / Plus
Query: 90 cacaccaatacctccacgattgctgatccacttgtgccaatcagtccagtcatccacaat 149
|||||||||||| ||||| |||| ||||||||| ||| ||| ||||||||| || ||
Sbjct: 41079 cacaccaataccaccacggctgctaatccacttgctccagtcatcccagtcatcaactat 41138
Query: 150 cttctgccactcaaatccagaaggattgaacaggaatggtgcaaagagccaagtgcccac 209
|| ||||||||||| || || || ||||| |||||||||||||| ||||||||| ||
Sbjct: 41139 tttttgccactcaaaccctgatgggttgaagaggaatggtgcaaacagccaagtgattac 41198
Query: 210 catgaaccacat 221
|| |||||||||
Sbjct: 41199 caggaaccacat 41210
>gb|AACV01013162.1| Oryza sativa (japonica cultivar-group) chromosome 6 Ctg013162, whole
genome shotgun sequence
Length = 37554
Score = 79.8 bits (40), Expect = 2e-012
Identities = 109/132 (82%)
Strand = Plus / Minus
Query: 90 cacaccaatacctccacgattgctgatccacttgtgccaatcagtccagtcatccacaat 149
|||||||||||| ||||| |||| ||||||||| ||| ||| ||||||||| || ||
Sbjct: 36779 cacaccaataccaccacggctgctaatccacttgctccagtcatcccagtcatcaactat 36720
Query: 150 cttctgccactcaaatccagaaggattgaacaggaatggtgcaaagagccaagtgcccac 209
|| ||||||||||| || || || ||||| |||||||||||||| ||||||||| ||
Sbjct: 36719 tttttgccactcaaaccctgatgggttgaagaggaatggtgcaaacagccaagtgattac 36660
Query: 210 catgaaccacat 221
|| |||||||||
Sbjct: 36659 caggaaccacat 36648
>dbj|AP007226.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
clone:OSJNBb0036B04
Length = 136159
Score = 79.8 bits (40), Expect = 2e-012
Identities = 109/132 (82%)
Strand = Plus / Plus
Query: 90 cacaccaatacctccacgattgctgatccacttgtgccaatcagtccagtcatccacaat 149
|||||||||||| ||||| |||| ||||||||| ||| ||| ||||||||| || ||
Sbjct: 13548 cacaccaataccaccacggctgctaatccacttgctccagtcatcccagtcatcaactat 13607
Query: 150 cttctgccactcaaatccagaaggattgaacaggaatggtgcaaagagccaagtgcccac 209
|| ||||||||||| || || || ||||| |||||||||||||| ||||||||| ||
Sbjct: 13608 tttttgccactcaaaccctgatgggttgaagaggaatggtgcaaacagccaagtgattac 13667
Query: 210 catgaaccacat 221
|| |||||||||
Sbjct: 13668 caggaaccacat 13679
>dbj|AP007257.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
clone:OSJNBb0019L07
Length = 131650
Score = 79.8 bits (40), Expect = 2e-012
Identities = 109/132 (82%)
Strand = Plus / Plus
Query: 90 cacaccaatacctccacgattgctgatccacttgtgccaatcagtccagtcatccacaat 149
|||||||||||| ||||| |||| ||||||||| ||| ||| ||||||||| || ||
Sbjct: 123942 cacaccaataccaccacggctgctaatccacttgctccagtcatcccagtcatcaactat 124001
Query: 150 cttctgccactcaaatccagaaggattgaacaggaatggtgcaaagagccaagtgcccac 209
|| ||||||||||| || || || ||||| |||||||||||||| ||||||||| ||
Sbjct: 124002 tttttgccactcaaaccctgatgggttgaagaggaatggtgcaaacagccaagtgattac 124061
Query: 210 catgaaccacat 221
|| |||||||||
Sbjct: 124062 caggaaccacat 124073
>gb|CH401209.1| Oryza sativa (japonica cultivar-group) chromosome 6 scaffold000046 genomic
scaffold, whole genome shotgun sequence
Length = 8607552
Score = 79.8 bits (40), Expect = 2e-012
Identities = 109/132 (82%)
Strand = Plus / Plus
Query: 90 cacaccaatacctccacgattgctgatccacttgtgccaatcagtccagtcatccacaat 149
|||||||||||| ||||| |||| ||||||||| ||| ||| ||||||||| || ||
Sbjct: 3912868 cacaccaataccaccacggctgctaatccacttgctccagtcatcccagtcatcaactat 3912927
Query: 150 cttctgccactcaaatccagaaggattgaacaggaatggtgcaaagagccaagtgcccac 209
|| ||||||||||| || || || ||||| |||||||||||||| ||||||||| ||
Sbjct: 3912928 tttttgccactcaaaccctgatgggttgaagaggaatggtgcaaacagccaagtgattac 3912987
Query: 210 catgaaccacat 221
|| |||||||||
Sbjct: 3912988 caggaaccacat 3912999
>dbj|BA000029.3| Oryza sativa (japonica cultivar-group) mitochondrial DNA, complete genome
Length = 490520
Score = 73.8 bits (37), Expect = 1e-010
Identities = 76/89 (85%)
Strand = Plus / Plus
Query: 133 gtccagtcatccacaatcttctgccactcaaatccagaaggattgaacaggaatggtgca 192
||||||||||| || || ||||||||||||||||| || |||||||| |||||||| ||
Sbjct: 299904 gtccagtcatctactattttctgccactcaaatcctgatggattgaagaggaatggagcg 299963
Query: 193 aagagccaagtgcccaccatgaaccacat 221
|| ||||||||| |||| |||||||||
Sbjct: 299964 aatagccaagtgataaccaagaaccacat 299992
>dbj|AG021572.1| Oryza sativa (japonica cultivar-group) DNA, clone:NC0149_0_401_1A,
3' flanking sequence of Tos17 insertion in rice strain
NC0149, genomic survey sequence
Length = 559
Score = 67.9 bits (34), Expect = 7e-009
Identities = 94/115 (81%)
Strand = Plus / Plus
Query: 90 cacaccaatacctccacgattgctgatccacttgtgccaatcagtccagtcatccacaat 149
|||||||||||| ||||| |||| ||||||||| ||| ||| ||||||||| || ||
Sbjct: 340 cacaccaataccaccacggctgctaatccacttgctccagtcatcccagtcatcaactat 399
Query: 150 cttctgccactcaaatccagaaggattgaacaggaatggtgcaaagagccaagtg 204
|| ||||||||||| || || || ||||| ||||||||||||| ||||||||
Sbjct: 400 tttttgccactcaaaccctgatgggttgaannggaatggtgcaaacngccaagtg 454
>dbj|AK064446.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-110-F01, full
insert sequence
Length = 1923
Score = 67.9 bits (34), Expect = 7e-009
Identities = 115/142 (80%)
Strand = Plus / Minus
Query: 60 ccaccatgactcccagcttttctctggtgccacaccaatacctccacgattgctgatcca 119
|||||| | |||||| |||| ||||||||||| ||||||||||| | |||||| |||||
Sbjct: 970 ccaccaagcctcccaactttgctctggtgccaggccaatacctcctctattgctcatcca 911
Query: 120 cttgtgccaatcagtccagtcatccacaatcttctgccactcaaatccagaaggattgaa 179
| ||| |||||||||||||| ||| |||| ||||||||||| | || ||||||||
Sbjct: 910 atgccaccagtcagtccagtcatcaacagtcttgtgccactcaaagcatgatggattgaa 851
Query: 180 caggaatggtgcaaagagccaa 201
| || |||||||| ||||||
Sbjct: 850 gacaaaaggtgcaaacagccaa 829
>gb|AACV01001413.1| Oryza sativa (japonica cultivar-group) chromosome 1 Ctg001413, whole
genome shotgun sequence
Length = 32302
Score = 67.9 bits (34), Expect = 7e-009
Identities = 115/142 (80%)
Strand = Plus / Plus
Query: 60 ccaccatgactcccagcttttctctggtgccacaccaatacctccacgattgctgatcca 119
|||||| | |||||| |||| ||||||||||| ||||||||||| | |||||| |||||
Sbjct: 7695 ccaccaagcctcccaactttgctctggtgccaggccaatacctcctctattgctcatcca 7754
Query: 120 cttgtgccaatcagtccagtcatccacaatcttctgccactcaaatccagaaggattgaa 179
| ||| |||||||||||||| ||| |||| ||||||||||| | || ||||||||
Sbjct: 7755 atgccaccagtcagtccagtcatcaacagtcttgtgccactcaaagcatgatggattgaa 7814
Query: 180 caggaatggtgcaaagagccaa 201
| || |||||||| ||||||
Sbjct: 7815 gacaaaaggtgcaaacagccaa 7836
>dbj|BA000010.8| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43342410
Score = 67.9 bits (34), Expect = 7e-009
Identities = 115/142 (80%)
Strand = Plus / Plus
Query: 60 ccaccatgactcccagcttttctctggtgccacaccaatacctccacgattgctgatcca 119
|||||| | |||||| |||| ||||||||||| ||||||||||| | |||||| |||||
Sbjct: 19379447 ccaccaagcctcccaactttgctctggtgccaggccaatacctcctctattgctcatcca 19379506
Query: 120 cttgtgccaatcagtccagtcatccacaatcttctgccactcaaatccagaaggattgaa 179
| ||| |||||||||||||| ||| |||| ||||||||||| | || ||||||||
Sbjct: 19379507 atgccaccagtcagtccagtcatcaacagtcttgtgccactcaaagcatgatggattgaa 19379566
Query: 180 caggaatggtgcaaagagccaa 201
| || |||||||| ||||||
Sbjct: 19379567 gacaaaaggtgcaaacagccaa 19379588
Score = 58.0 bits (29), Expect = 7e-006
Identities = 155/197 (78%)
Strand = Plus / Plus
Query: 295 atcatcagctcaaggcccttgacaaaatggctgcgggaataaagtcgatagttctcagca 354
|||| ||| ||||| || || ||||| ||||||||||| || | || || || ||||||
Sbjct: 19334597 atcaacagttcaagtcctttaacaaagtggctgcgggagtacatgcggtaattgtcagca 19334656
Query: 355 aatttggcatggaacaccacaaacccacgtccagtggctctgtattccgctcctccatgg 414
|| || |||||| | || ||||| ||||| || || | |||||||| || || |||||
Sbjct: 19334657 aactttgcatggtagacaacaaatccacgacctgtaggtctgtatttagccccgccatgc 19334716
Query: 415 agtaacgtccttccgtagtagtgagtttttgttcccaacgagaatgtgaagaaaacagag 474
|||| || |||||||||||||| ||||| || || | | ||||||||| || |||||
Sbjct: 19334717 agtattgttcttccgtagtagtgcgttttggtgccaagctggaatgtgaaaaacacagat 19334776
Query: 475 gccaactgaagctgcat 491
|||| ||||||||||||
Sbjct: 19334777 gccagctgaagctgcat 19334793
>ref|NM_193211.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 5634
Score = 67.9 bits (34), Expect = 7e-009
Identities = 115/142 (80%)
Strand = Plus / Minus
Query: 60 ccaccatgactcccagcttttctctggtgccacaccaatacctccacgattgctgatcca 119
|||||| | |||||| |||| ||||||||||| ||||||||||| | |||||| |||||
Sbjct: 5019 ccaccaagcctcccaactttgctctggtgccaggccaatacctcctctattgctcatcca 4960
Query: 120 cttgtgccaatcagtccagtcatccacaatcttctgccactcaaatccagaaggattgaa 179
| ||| |||||||||||||| ||| |||| ||||||||||| | || ||||||||
Sbjct: 4959 atgccaccagtcagtccagtcatcaacagtcttgtgccactcaaagcatgatggattgaa 4900
Query: 180 caggaatggtgcaaagagccaa 201
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Sbjct: 4899 gacaaaaggtgcaaacagccaa 4878
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 824,204
Number of Sequences: 438736
Number of extensions: 824204
Number of successful extensions: 3684
Number of sequences better than 0.5: 82
Number of HSP's better than 0.5 without gapping: 84
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 3304
Number of HSP's gapped (non-prelim): 354
length of query: 690
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 669
effective length of database: 2,791,206,460
effective search space: 1867317121740
effective search space used: 1867317121740
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)