BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QCG22g05.yg.2.1
(681 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|AK101189.1| Oryza sativa (japonica cultivar-group) cDNA... 533 e-149
dbj|AK120291.1| Oryza sativa (japonica cultivar-group) cDNA... 525 e-146
gb|C22429.1|C22429 C22429 Rice callus cDNA Oryza sativa (ja... 428 e-117
gb|CF312729.1|CF312729 ABF--08-J17.g1 ABF3-overexpressing t... 351 3e-094
emb|BX000496.1|CNS08CDM Oryza sativa chromosome 12, . BAC O... 224 5e-056
emb|BX000503.2|CNS08CDT Oryza sativa chromosome 12, . BAC O... 224 5e-056
emb|BX072548.4|CNS09S4R Oryza sativa chromosome 11, . BAC O... 224 5e-056
ref|NT_107145.1| Oryza sativa (japonica cultivar-group) 224 5e-056
gb|AACV01022206.1| Oryza sativa (japonica cultivar-group) c... 224 5e-056
gb|AACV01023825.1| Oryza sativa (japonica cultivar-group) c... 224 5e-056
gb|CH401272.1| Oryza sativa (japonica cultivar-group) chrom... 224 5e-056
gb|CH401255.1| Oryza sativa (japonica cultivar-group) chrom... 224 5e-056
gb|CM000149.1| Oryza sativa (japonica cultivar-group) chrom... 224 5e-056
gb|CM000148.1| Oryza sativa (japonica cultivar-group) chrom... 224 5e-056
dbj|AP008217.1| Oryza sativa (japonica cultivar-group) geno... 224 5e-056
dbj|AP008218.1| Oryza sativa (japonica cultivar-group) geno... 224 5e-056
gb|DP000010.1| Oryza sativa (japonica cultivar-group) chrom... 224 5e-056
gb|DP000011.1| Oryza sativa (japonica cultivar-group) chrom... 224 5e-056
gb|AQ863968.1|AQ863968 nbeb0022E20r CUGI Rice BAC Library (... 139 2e-030
gb|AU055711.1|AU055711 AU055711 Oryza sativa mature leaf Ni... 60 2e-006
dbj|AG213548.1| Oryza sativa (japonica cultivar-group) DNA,... 44 0.097
dbj|AG024555.1| Oryza sativa (japonica cultivar-group) DNA,... 44 0.097
dbj|AB156800.1| Oryza sativa (japonica cultivar-group) DNA,... 44 0.097
dbj|AB157563.2| Oryza sativa (japonica cultivar-group) DNA,... 44 0.097
dbj|AG213126.1| Oryza sativa (japonica cultivar-group) DNA,... 42 0.38
dbj|AG213128.1| Oryza sativa (japonica cultivar-group) DNA,... 42 0.38
dbj|AG213723.1| Oryza sativa (japonica cultivar-group) DNA,... 42 0.38
dbj|AG213908.1| Oryza sativa (japonica cultivar-group) DNA,... 42 0.38
dbj|AG213976.1| Oryza sativa (japonica cultivar-group) DNA,... 42 0.38
dbj|AG021086.1| Oryza sativa (japonica cultivar-group) DNA,... 42 0.38
dbj|AG024570.1| Oryza sativa (japonica cultivar-group) DNA,... 42 0.38
dbj|AB157529.1| Oryza sativa (japonica cultivar-group) DNA,... 42 0.38
gb|CF452785.1|CF452785 EST00001 Subtracted cDNA library of ... 42 0.38
>dbj|AK101189.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033030E21, full
insert sequence
Length = 3318
Score = 533 bits (269), Expect = e-149
Identities = 472/540 (87%), Gaps = 3/540 (0%)
Strand = Plus / Minus
Query: 17 gtactctgggtccaggtatccaactgtccctcgaactatacttgacacatgagacccatc 76
||||||||||||||| ||||||||||| |||| |||||||||||| ||||||||||| ||
Sbjct: 2561 gtactctgggtccagatatccaactgttcctctaactatacttgatacatgagacccgtc 2502
Query: 77 cactgcaggtttcgaaagcccaaagtctgccacttttgctctcatgttcttgtctaggag 136
|| ||||||| || | ||||||||||| ||||||||||||||||||||||| |||||
Sbjct: 2501 gacaacaggttttgacaagccaaagtctgcaacttttgctctcatgttcttgtcaaggag 2442
Query: 137 aatgttactgctcttcaggtctctatggatgattgttggggagcatcccgtgtggagata 196
||||||||||||||| |||||||| |||||||| |||||||||||||| |||||||||||
Sbjct: 2441 aatgttactgctcttgaggtctctgtggatgatagttggggagcatcctgtgtggagata 2382
Query: 197 ctctatacctttcgcagaatcttctgcaatctcaagacgcttcagccagctagttatctt 256
|||||| ||||| |||| ||||||||| |||||||||||||| | ||||||| |||| ||
Sbjct: 2381 ctctattccttttgcagcatcttctgctatctcaagacgcttgacccagctatttatttt 2322
Query: 257 ttcattatcag---ctccacgaaggtgctcttttagtgtcccattatgcatgaactcata 313
| ||| ||||| ||||||| ||||| ||||||| ||||| ||||||||||| |||||
Sbjct: 2321 tacatcatcagggcctccacggaggtgttcttttaacgtcccgttatgcatgaattcata 2262
Query: 314 cactagtatgtttttgccatcttgctgactgtaaccaaggaatgtaaccaggtgtctatg 373
||| ||||| ||||| ||||||||||| |||||||||||||| | ||||||| ||||||
Sbjct: 2261 cacaagtatatttttaccatcttgctggctgtaaccaaggaagctcaccaggtttctatg 2202
Query: 374 atgtattctggaaagcaatgtcacctcattcaagaattctctgattccctgatacgagtc 433
||| ||||| ||||||||||| |||||||||| |||||||| ||| || ||||| |||||
Sbjct: 2201 atgaattcttgaaagcaatgttacctcattcaggaattctcggatgccttgataggagtc 2142
Query: 434 attcgtgagaagtttgactgcaatctctctcccatcagccaactttccatagtatactat 493
||| ||||||||||||||||| || ||||||||||| | | ||||||||||||||||||
Sbjct: 2141 atttgtgagaagtttgactgcgatttctctcccatctgtaagctttccatagtatactat 2082
Query: 494 gccaaagcctccngncccaattcttctctcaaatttgccantagcattttcaatttcaga 553
|||||| ||||| | ||||||||||| ||||||||| || |||||| ||||||||||||
Sbjct: 2081 gccaaaccctcccgaaccaattcttctgtcaaatttgtcagtagcatcttcaatttcaga 2022
>dbj|AK120291.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013050I12, full
insert sequence
Length = 1455
Score = 525 bits (265), Expect = e-146
Identities = 471/540 (87%), Gaps = 3/540 (0%)
Strand = Plus / Minus
Query: 17 gtactctgggtccaggtatccaactgtccctcgaactatacttgacacatgagacccatc 76
||||||||||||||| ||||||||||| |||| |||||||||||| ||||||||||| ||
Sbjct: 811 gtactctgggtccagatatccaactgttcctctaactatacttgatacatgagacccgtc 752
Query: 77 cactgcaggtttcgaaagcccaaagtctgccacttttgctctcatgttcttgtctaggag 136
|| ||||||| || | ||||||||||| ||||||||||||||| ||||||| |||||
Sbjct: 751 gacaacaggttttgacaagccaaagtctgcaacttttgctctcatgctcttgtcaaggag 692
Query: 137 aatgttactgctcttcaggtctctatggatgattgttggggagcatcccgtgtggagata 196
||||||||||||||| |||||||| |||||||| |||||||||||||| |||||||||||
Sbjct: 691 aatgttactgctcttgaggtctctgtggatgatagttggggagcatcctgtgtggagata 632
Query: 197 ctctatacctttcgcagaatcttctgcaatctcaagacgcttcagccagctagttatctt 256
|||||| ||||| |||| ||||||||| |||||||||||||| | ||||||| |||| ||
Sbjct: 631 ctctattccttttgcagcatcttctgctatctcaagacgcttgacccagctatttatttt 572
Query: 257 ttcattatcag---ctccacgaaggtgctcttttagtgtcccattatgcatgaactcata 313
| ||| ||||| ||||||| ||||| ||||||| ||||| ||||||||||| |||||
Sbjct: 571 tacatcatcagggcctccacggaggtgttcttttaacgtcccgttatgcatgaattcata 512
Query: 314 cactagtatgtttttgccatcttgctgactgtaaccaaggaatgtaaccaggtgtctatg 373
||| ||||| ||||| ||||||||||| |||||||||||||| | ||||||| ||||||
Sbjct: 511 cacaagtatatttttaccatcttgctggctgtaaccaaggaagctcaccaggtttctatg 452
Query: 374 atgtattctggaaagcaatgtcacctcattcaagaattctctgattccctgatacgagtc 433
||| ||||| ||||||||||| |||||||||| |||||||| ||| || ||||| |||||
Sbjct: 451 atgaattcttgaaagcaatgttacctcattcaggaattctcggatgccttgataggagtc 392
Query: 434 attcgtgagaagtttgactgcaatctctctcccatcagccaactttccatagtatactat 493
||| ||||||||||||||||| || ||||||||||| | | ||||||||||||||||||
Sbjct: 391 atttgtgagaagtttgactgcgatttctctcccatctgtaagctttccatagtatactat 332
Query: 494 gccaaagcctccngncccaattcttctctcaaatttgccantagcattttcaatttcaga 553
|||||| ||||| | ||||||||||| ||||||||| || |||||| ||||||||||||
Sbjct: 331 gccaaaccctcccgaaccaattcttctgtcaaatttgtcagtagcatcttcaatttcaga 272
>gb|C22429.1|C22429 C22429 Rice callus cDNA Oryza sativa (japonica cultivar-group) cDNA
clone C60091_2A, mRNA sequence
Length = 448
Score = 428 bits (216), Expect = e-117
Identities = 387/442 (87%), Gaps = 4/442 (0%)
Strand = Plus / Minus
Query: 17 gtactctgggtccaggtatccaactgtccctcgaactatacttgac-acatgagacccat 75
||||||||||||||| ||||||||||| |||| |||||||||||| ||||||||||| |
Sbjct: 445 gtactctgggtccagatatccaactgttcctctaactatacttgaatacatgagacccgt 386
Query: 76 ccactgcaggtttcgaaagcccaaagtctgccacttttgctctcatgttcttgtctagga 135
| || ||||||| || | ||||||||||| ||||||||||||||||||||||| ||||
Sbjct: 385 cgacaacaggttttgacaagccaaagtctgcaacttttgctctcatgttcttgtcaagga 326
Query: 136 gaatgttactgctcttcaggtctctatggatgattgttggggagcatcccgtgtggagat 195
|||||||||||||||| |||||||| |||||||| |||||||||||||| ||||||||||
Sbjct: 325 gaatgttactgctcttgaggtctctgtggatgatagttggggagcatcctgtgtggagat 266
Query: 196 actctatacctttcgcagaatcttctgcaatctcaagacgcttcagccagctagttatct 255
||||||| ||||| |||| ||||||||| |||||||||||||| | ||||||| |||| |
Sbjct: 265 actctattccttttgcagcatcttctgctatctcaagacgcttgacccagctatttattt 206
Query: 256 tttcattatcag---ctccacgaaggtgctcttttagtgtcccattatgcatgaactcat 312
|| ||| ||||| ||||||| ||||| ||||||| ||||| ||||||||||| ||||
Sbjct: 205 ttacatcatcagggcctccacggaggtgttcttttaacgtcccgttatgcatgaattcat 146
Query: 313 acactagtatgtttttgccatcttgctgactgtaaccaaggaatgtaaccaggtgtctat 372
|||| ||||| ||||| ||||||||||| |||||||||||||| | ||||||| |||||
Sbjct: 145 acacaagtatatttttaccatcttgctggctgtaaccaaggaagctcaccaggtttctat 86
Query: 373 gatgtattctggaaagcaatgtcacctcattcaagaattctctgattccctgatacgagt 432
|||| ||||| ||||||||||| |||||||||| |||||||| ||| || ||||| ||||
Sbjct: 85 gatgaattcttgaaagcaatgttacctcattcaggaattctcggatgccttgataggagt 26
Query: 433 cattcgtgagaagtttgactgc 454
|||| |||||||||||||||||
Sbjct: 25 catttgtgagaagtttgactgc 4
>gb|CF312729.1|CF312729 ABF--08-J17.g1 ABF3-overexpressing transgenic rice plasmid cDNA
library (ABF) Oryza sativa (japonica cultivar-group)
cDNA clone ABF--08-J17, mRNA sequence
Length = 582
Score = 351 bits (177), Expect = 3e-094
Identities = 317/363 (87%), Gaps = 3/363 (0%)
Strand = Plus / Minus
Query: 17 gtactctgggtccaggtatccaactgtccctcgaactatacttgacacatgagacccatc 76
||||||||||||||| ||||||||||| |||| |||||||||||| ||||||||||| ||
Sbjct: 374 gtactctgggtccagatatccaactgttcctctaactatacttgatacatgagacccgtc 315
Query: 77 cactgcaggtttcgaaagcccaaagtctgccacttttgctctcatgttcttgtctaggag 136
|| ||||||| || | ||||||||||| ||||||||||||||| ||||||| |||||
Sbjct: 314 gacaacaggttttgacaagccaaagtctgcaacttttgctctcatgctcttgtcaaggag 255
Query: 137 aatgttactgctcttcaggtctctatggatgattgttggggagcatcccgtgtggagata 196
||||||||||||||| |||||||| |||||||| |||||||||||||| |||||||||||
Sbjct: 254 aatgttactgctcttgaggtctctgtggatgatagttggggagcatcctgtgtggagata 195
Query: 197 ctctatacctttcgcagaatcttctgcaatctcaagacgcttcagccagctagttatctt 256
|||||| ||||| |||| ||||||||| |||||||||||||| | ||||||| |||| ||
Sbjct: 194 ctctattccttttgcagcatcttctgctatctcaagacgcttgacccagctatttatttt 135
Query: 257 ttcattatcag---ctccacgaaggtgctcttttagtgtcccattatgcatgaactcata 313
| ||| ||||| ||||||| ||||| ||||||| ||||| ||||||||||| |||||
Sbjct: 134 tacatcatcagggcctccacggaggtgttcttttaacgtcccgttatgcatgaattcata 75
Query: 314 cactagtatgtttttgccatcttgctgactgtaaccaaggaatgtaaccaggtgtctatg 373
||| ||||| ||||| ||||||||||| |||||||||||||| | ||||||| ||||||
Sbjct: 74 cacaagtatatttttaccatcttgctggctgtaaccaaggaagctcaccaggtttctatg 15
Query: 374 atg 376
|||
Sbjct: 14 atg 12
>emb|BX000496.1|CNS08CDM Oryza sativa chromosome 12, . BAC OSJNBa0096E03 of library OSJNBa from
chromosome 12 of cultivar Nipponbare of ssp. japonica of
Oryza sativa (rice), complete sequence
Length = 161808
Score = 224 bits (113), Expect = 5e-056
Identities = 167/185 (90%)
Strand = Plus / Plus
Query: 18 tactctgggtccaggtatccaactgtccctcgaactatacttgacacatgagacccatcc 77
|||||||||||||| ||||||||||| |||| |||||||||||| ||||||||||| ||
Sbjct: 64378 tactctgggtccagatatccaactgttcctctaactatacttgatacatgagacccgtcg 64437
Query: 78 actgcaggtttcgaaagcccaaagtctgccacttttgctctcatgttcttgtctaggaga 137
|| ||||||| || | ||||||||||| ||||||||||||||||||||||| ||||||
Sbjct: 64438 acaacaggttttgacaagccaaagtctgcaacttttgctctcatgttcttgtcaaggaga 64497
Query: 138 atgttactgctcttcaggtctctatggatgattgttggggagcatcccgtgtggagatac 197
|||||||||||||| |||||||| |||||||| |||||||||||||| ||||||||||||
Sbjct: 64498 atgttactgctcttgaggtctctgtggatgatagttggggagcatcctgtgtggagatac 64557
Query: 198 tctat 202
|||||
Sbjct: 64558 tctat 64562
Score = 161 bits (81), Expect = 6e-037
Identities = 138/158 (87%)
Strand = Plus / Plus
Query: 396 acctcattcaagaattctctgattccctgatacgagtcattcgtgagaagtttgactgca 455
|||||||||| |||||||| ||| || ||||| |||||||| |||||||||||||||||
Sbjct: 67417 acctcattcaggaattctcggatgccttgataggagtcatttgtgagaagtttgactgcg 67476
Query: 456 atctctctcccatcagccaactttccatagtatactatgccaaagcctccngncccaatt 515
|| ||||||||||| | | |||||||||||||||||||||||| ||||| | ||||||
Sbjct: 67477 atttctctcccatctgtaagctttccatagtatactatgccaaaccctcccgaaccaatt 67536
Query: 516 cttctctcaaatttgccantagcattttcaatttcaga 553
||||| ||||||||| || |||||| ||||||||||||
Sbjct: 67537 cttctgtcaaatttgtcagtagcatcttcaatttcaga 67574
Score = 123 bits (62), Expect = 1e-025
Identities = 113/130 (86%)
Strand = Plus / Plus
Query: 270 ccacgaaggtgctcttttagtgtcccattatgcatgaactcatacactagtatgtttttg 329
||||| ||||| ||||||| ||||| ||||||||||| |||||||| ||||| |||||
Sbjct: 65311 ccacggaggtgttcttttaacgtcccgttatgcatgaattcatacacaagtatattttta 65370
Query: 330 ccatcttgctgactgtaaccaaggaatgtaaccaggtgtctatgatgtattctggaaagc 389
||||||||||| |||||||||||||| | ||||||| ||||||||| ||||| ||||||
Sbjct: 65371 ccatcttgctggctgtaaccaaggaagctcaccaggtttctatgatgaattcttgaaagc 65430
Query: 390 aatgtcacct 399
||||| ||||
Sbjct: 65431 aatgttacct 65440
Score = 58.0 bits (29), Expect = 6e-006
Identities = 56/65 (86%)
Strand = Plus / Plus
Query: 203 acctttcgcagaatcttctgcaatctcaagacgcttcagccagctagttatcttttcatt 262
|||||| |||| ||||||||| |||||||||||||| | ||||||| |||| ||| |||
Sbjct: 64674 accttttgcagcatcttctgctatctcaagacgcttgacccagctatttatttttacatc 64733
Query: 263 atcag 267
|||||
Sbjct: 64734 atcag 64738
>emb|BX000503.2|CNS08CDT Oryza sativa chromosome 12, . BAC OSJNBb0077A02 of library OSJNBb from
chromosome 12 of cultivar Nipponbare of ssp. japonica of
Oryza sativa (rice), complete sequence
Length = 131346
Score = 224 bits (113), Expect = 5e-056
Identities = 167/185 (90%)
Strand = Plus / Plus
Query: 18 tactctgggtccaggtatccaactgtccctcgaactatacttgacacatgagacccatcc 77
|||||||||||||| ||||||||||| |||| |||||||||||| ||||||||||| ||
Sbjct: 112769 tactctgggtccagatatccaactgttcctctaactatacttgatacatgagacccgtcg 112828
Query: 78 actgcaggtttcgaaagcccaaagtctgccacttttgctctcatgttcttgtctaggaga 137
|| ||||||| || | ||||||||||| ||||||||||||||||||||||| ||||||
Sbjct: 112829 acaacaggttttgacaagccaaagtctgcaacttttgctctcatgttcttgtcaaggaga 112888
Query: 138 atgttactgctcttcaggtctctatggatgattgttggggagcatcccgtgtggagatac 197
|||||||||||||| |||||||| |||||||| |||||||||||||| ||||||||||||
Sbjct: 112889 atgttactgctcttgaggtctctgtggatgatagttggggagcatcctgtgtggagatac 112948
Query: 198 tctat 202
|||||
Sbjct: 112949 tctat 112953
Score = 161 bits (81), Expect = 6e-037
Identities = 138/158 (87%)
Strand = Plus / Plus
Query: 396 acctcattcaagaattctctgattccctgatacgagtcattcgtgagaagtttgactgca 455
|||||||||| |||||||| ||| || ||||| |||||||| |||||||||||||||||
Sbjct: 115808 acctcattcaggaattctcggatgccttgataggagtcatttgtgagaagtttgactgcg 115867
Query: 456 atctctctcccatcagccaactttccatagtatactatgccaaagcctccngncccaatt 515
|| ||||||||||| | | |||||||||||||||||||||||| ||||| | ||||||
Sbjct: 115868 atttctctcccatctgtaagctttccatagtatactatgccaaaccctcccgaaccaatt 115927
Query: 516 cttctctcaaatttgccantagcattttcaatttcaga 553
||||| ||||||||| || |||||| ||||||||||||
Sbjct: 115928 cttctgtcaaatttgtcagtagcatcttcaatttcaga 115965
Score = 123 bits (62), Expect = 1e-025
Identities = 113/130 (86%)
Strand = Plus / Plus
Query: 270 ccacgaaggtgctcttttagtgtcccattatgcatgaactcatacactagtatgtttttg 329
||||| ||||| ||||||| ||||| ||||||||||| |||||||| ||||| |||||
Sbjct: 113702 ccacggaggtgttcttttaacgtcccgttatgcatgaattcatacacaagtatattttta 113761
Query: 330 ccatcttgctgactgtaaccaaggaatgtaaccaggtgtctatgatgtattctggaaagc 389
||||||||||| |||||||||||||| | ||||||| ||||||||| ||||| ||||||
Sbjct: 113762 ccatcttgctggctgtaaccaaggaagctcaccaggtttctatgatgaattcttgaaagc 113821
Query: 390 aatgtcacct 399
||||| ||||
Sbjct: 113822 aatgttacct 113831
Score = 58.0 bits (29), Expect = 6e-006
Identities = 56/65 (86%)
Strand = Plus / Plus
Query: 203 acctttcgcagaatcttctgcaatctcaagacgcttcagccagctagttatcttttcatt 262
|||||| |||| ||||||||| |||||||||||||| | ||||||| |||| ||| |||
Sbjct: 113065 accttttgcagcatcttctgctatctcaagacgcttgacccagctatttatttttacatc 113124
Query: 263 atcag 267
|||||
Sbjct: 113125 atcag 113129
>emb|BX072548.4|CNS09S4R Oryza sativa chromosome 11, . BAC OSJNBa0029D01 of library OSJNBa from
chromosome 11 of cultivar Nipponbare of ssp. japonica of
Oryza sativa (rice), complete sequence
Length = 147503
Score = 224 bits (113), Expect = 5e-056
Identities = 167/185 (90%)
Strand = Plus / Plus
Query: 18 tactctgggtccaggtatccaactgtccctcgaactatacttgacacatgagacccatcc 77
|||||||||||||| ||||||||||| |||| |||||||||||| ||||||||||| ||
Sbjct: 117158 tactctgggtccagatatccaactgttcctctaactatacttgatacatgagacccgtcg 117217
Query: 78 actgcaggtttcgaaagcccaaagtctgccacttttgctctcatgttcttgtctaggaga 137
|| ||||||| || | ||||||||||| ||||||||||||||||||||||| ||||||
Sbjct: 117218 acaacaggttttgacaagccaaagtctgcaacttttgctctcatgttcttgtcaaggaga 117277
Query: 138 atgttactgctcttcaggtctctatggatgattgttggggagcatcccgtgtggagatac 197
|||||||||||||| |||||||| |||||||| |||||||||||||| ||||||||||||
Sbjct: 117278 atgttactgctcttgaggtctctgtggatgatagttggggagcatcctgtgtggagatac 117337
Query: 198 tctat 202
|||||
Sbjct: 117338 tctat 117342
Score = 168 bits (85), Expect = 2e-039
Identities = 139/158 (87%)
Strand = Plus / Plus
Query: 396 acctcattcaagaattctctgattccctgatacgagtcattcgtgagaagtttgactgca 455
||||||||||||||||||| ||| || ||||| |||||||| |||||||||||||||||
Sbjct: 120026 acctcattcaagaattctcggatgccttgataggagtcatttgtgagaagtttgactgcg 120085
Query: 456 atctctctcccatcagccaactttccatagtatactatgccaaagcctccngncccaatt 515
|| ||||||||||| | | |||||||||||||||||||||||| ||||| | ||||||
Sbjct: 120086 atttctctcccatctgtaagctttccatagtatactatgccaaaccctcccgaaccaatt 120145
Query: 516 cttctctcaaatttgccantagcattttcaatttcaga 553
||||| ||||||||| || |||||| ||||||||||||
Sbjct: 120146 cttctgtcaaatttgtcagtagcatcttcaatttcaga 120183
Score = 131 bits (66), Expect = 5e-028
Identities = 114/130 (87%)
Strand = Plus / Plus
Query: 270 ccacgaaggtgctcttttagtgtcccattatgcatgaactcatacactagtatgtttttg 329
||||| ||||||||||||| ||||| ||||||||||| |||||||| ||||| |||||
Sbjct: 118090 ccacggaggtgctcttttaacgtcccgttatgcatgaattcatacacaagtatattttta 118149
Query: 330 ccatcttgctgactgtaaccaaggaatgtaaccaggtgtctatgatgtattctggaaagc 389
||||||||||| |||||||||||||| | ||||||| ||||||||| ||||| ||||||
Sbjct: 118150 ccatcttgctggctgtaaccaaggaagctcaccaggtttctatgatgaattcttgaaagc 118209
Query: 390 aatgtcacct 399
||||| ||||
Sbjct: 118210 aatgttacct 118219
Score = 65.9 bits (33), Expect = 3e-008
Identities = 57/65 (87%)
Strand = Plus / Plus
Query: 203 acctttcgcagaatcttctgcaatctcaagacgcttcagccagctagttatcttttcatt 262
|||||| |||| ||||||||| |||||||||||||| | |||||||||||| ||| |||
Sbjct: 117453 accttttgcagcatcttctgctatctcaagacgcttgacccagctagttatttttacatc 117512
Query: 263 atcag 267
|||||
Sbjct: 117513 atcag 117517
>ref|NT_107145.1| Oryza sativa (japonica cultivar-group)
Length = 1968172
Score = 224 bits (113), Expect = 5e-056
Identities = 167/185 (90%)
Strand = Plus / Plus
Query: 18 tactctgggtccaggtatccaactgtccctcgaactatacttgacacatgagacccatcc 77
|||||||||||||| ||||||||||| |||| |||||||||||| ||||||||||| ||
Sbjct: 112769 tactctgggtccagatatccaactgttcctctaactatacttgatacatgagacccgtcg 112828
Query: 78 actgcaggtttcgaaagcccaaagtctgccacttttgctctcatgttcttgtctaggaga 137
|| ||||||| || | ||||||||||| ||||||||||||||||||||||| ||||||
Sbjct: 112829 acaacaggttttgacaagccaaagtctgcaacttttgctctcatgttcttgtcaaggaga 112888
Query: 138 atgttactgctcttcaggtctctatggatgattgttggggagcatcccgtgtggagatac 197
|||||||||||||| |||||||| |||||||| |||||||||||||| ||||||||||||
Sbjct: 112889 atgttactgctcttgaggtctctgtggatgatagttggggagcatcctgtgtggagatac 112948
Query: 198 tctat 202
|||||
Sbjct: 112949 tctat 112953
Score = 161 bits (81), Expect = 6e-037
Identities = 138/158 (87%)
Strand = Plus / Plus
Query: 396 acctcattcaagaattctctgattccctgatacgagtcattcgtgagaagtttgactgca 455
|||||||||| |||||||| ||| || ||||| |||||||| |||||||||||||||||
Sbjct: 115808 acctcattcaggaattctcggatgccttgataggagtcatttgtgagaagtttgactgcg 115867
Query: 456 atctctctcccatcagccaactttccatagtatactatgccaaagcctccngncccaatt 515
|| ||||||||||| | | |||||||||||||||||||||||| ||||| | ||||||
Sbjct: 115868 atttctctcccatctgtaagctttccatagtatactatgccaaaccctcccgaaccaatt 115927
Query: 516 cttctctcaaatttgccantagcattttcaatttcaga 553
||||| ||||||||| || |||||| ||||||||||||
Sbjct: 115928 cttctgtcaaatttgtcagtagcatcttcaatttcaga 115965
Score = 123 bits (62), Expect = 1e-025
Identities = 113/130 (86%)
Strand = Plus / Plus
Query: 270 ccacgaaggtgctcttttagtgtcccattatgcatgaactcatacactagtatgtttttg 329
||||| ||||| ||||||| ||||| ||||||||||| |||||||| ||||| |||||
Sbjct: 113702 ccacggaggtgttcttttaacgtcccgttatgcatgaattcatacacaagtatattttta 113761
Query: 330 ccatcttgctgactgtaaccaaggaatgtaaccaggtgtctatgatgtattctggaaagc 389
||||||||||| |||||||||||||| | ||||||| ||||||||| ||||| ||||||
Sbjct: 113762 ccatcttgctggctgtaaccaaggaagctcaccaggtttctatgatgaattcttgaaagc 113821
Query: 390 aatgtcacct 399
||||| ||||
Sbjct: 113822 aatgttacct 113831
Score = 58.0 bits (29), Expect = 6e-006
Identities = 56/65 (86%)
Strand = Plus / Plus
Query: 203 acctttcgcagaatcttctgcaatctcaagacgcttcagccagctagttatcttttcatt 262
|||||| |||| ||||||||| |||||||||||||| | ||||||| |||| ||| |||
Sbjct: 113065 accttttgcagcatcttctgctatctcaagacgcttgacccagctatttatttttacatc 113124
Query: 263 atcag 267
|||||
Sbjct: 113125 atcag 113129
>gb|AACV01022206.1| Oryza sativa (japonica cultivar-group) chromosome 11 Ctg022206, whole
genome shotgun sequence
Length = 18958
Score = 224 bits (113), Expect = 5e-056
Identities = 167/185 (90%)
Strand = Plus / Minus
Query: 18 tactctgggtccaggtatccaactgtccctcgaactatacttgacacatgagacccatcc 77
|||||||||||||| ||||||||||| |||| |||||||||||| ||||||||||| ||
Sbjct: 7660 tactctgggtccagatatccaactgttcctctaactatacttgatacatgagacccgtcg 7601
Query: 78 actgcaggtttcgaaagcccaaagtctgccacttttgctctcatgttcttgtctaggaga 137
|| ||||||| || | ||||||||||| ||||||||||||||||||||||| ||||||
Sbjct: 7600 acaacaggttttgacaagccaaagtctgcaacttttgctctcatgttcttgtcaaggaga 7541
Query: 138 atgttactgctcttcaggtctctatggatgattgttggggagcatcccgtgtggagatac 197
|||||||||||||| |||||||| |||||||| |||||||||||||| ||||||||||||
Sbjct: 7540 atgttactgctcttgaggtctctgtggatgatagttggggagcatcctgtgtggagatac 7481
Query: 198 tctat 202
|||||
Sbjct: 7480 tctat 7476
Score = 168 bits (85), Expect = 2e-039
Identities = 139/158 (87%)
Strand = Plus / Minus
Query: 396 acctcattcaagaattctctgattccctgatacgagtcattcgtgagaagtttgactgca 455
||||||||||||||||||| ||| || ||||| |||||||| |||||||||||||||||
Sbjct: 4792 acctcattcaagaattctcggatgccttgataggagtcatttgtgagaagtttgactgcg 4733
Query: 456 atctctctcccatcagccaactttccatagtatactatgccaaagcctccngncccaatt 515
|| ||||||||||| | | |||||||||||||||||||||||| ||||| | ||||||
Sbjct: 4732 atttctctcccatctgtaagctttccatagtatactatgccaaaccctcccgaaccaatt 4673
Query: 516 cttctctcaaatttgccantagcattttcaatttcaga 553
||||| ||||||||| || |||||| ||||||||||||
Sbjct: 4672 cttctgtcaaatttgtcagtagcatcttcaatttcaga 4635
Score = 131 bits (66), Expect = 5e-028
Identities = 114/130 (87%)
Strand = Plus / Minus
Query: 270 ccacgaaggtgctcttttagtgtcccattatgcatgaactcatacactagtatgtttttg 329
||||| ||||||||||||| ||||| ||||||||||| |||||||| ||||| |||||
Sbjct: 6728 ccacggaggtgctcttttaacgtcccgttatgcatgaattcatacacaagtatattttta 6669
Query: 330 ccatcttgctgactgtaaccaaggaatgtaaccaggtgtctatgatgtattctggaaagc 389
||||||||||| |||||||||||||| | ||||||| ||||||||| ||||| ||||||
Sbjct: 6668 ccatcttgctggctgtaaccaaggaagctcaccaggtttctatgatgaattcttgaaagc 6609
Query: 390 aatgtcacct 399
||||| ||||
Sbjct: 6608 aatgttacct 6599
Score = 65.9 bits (33), Expect = 3e-008
Identities = 57/65 (87%)
Strand = Plus / Minus
Query: 203 acctttcgcagaatcttctgcaatctcaagacgcttcagccagctagttatcttttcatt 262
|||||| |||| ||||||||| |||||||||||||| | |||||||||||| ||| |||
Sbjct: 7365 accttttgcagcatcttctgctatctcaagacgcttgacccagctagttatttttacatc 7306
Query: 263 atcag 267
|||||
Sbjct: 7305 atcag 7301
>gb|AACV01023825.1| Oryza sativa (japonica cultivar-group) chromosome 12 Ctg023825, whole
genome shotgun sequence
Length = 46465
Score = 224 bits (113), Expect = 5e-056
Identities = 167/185 (90%)
Strand = Plus / Minus
Query: 18 tactctgggtccaggtatccaactgtccctcgaactatacttgacacatgagacccatcc 77
|||||||||||||| ||||||||||| |||| |||||||||||| ||||||||||| ||
Sbjct: 19310 tactctgggtccagatatccaactgttcctctaactatacttgatacatgagacccgtcg 19251
Query: 78 actgcaggtttcgaaagcccaaagtctgccacttttgctctcatgttcttgtctaggaga 137
|| ||||||| || | ||||||||||| ||||||||||||||||||||||| ||||||
Sbjct: 19250 acaacaggttttgacaagccaaagtctgcaacttttgctctcatgttcttgtcaaggaga 19191
Query: 138 atgttactgctcttcaggtctctatggatgattgttggggagcatcccgtgtggagatac 197
|||||||||||||| |||||||| |||||||| |||||||||||||| ||||||||||||
Sbjct: 19190 atgttactgctcttgaggtctctgtggatgatagttggggagcatcctgtgtggagatac 19131
Query: 198 tctat 202
|||||
Sbjct: 19130 tctat 19126
Score = 161 bits (81), Expect = 6e-037
Identities = 138/158 (87%)
Strand = Plus / Minus
Query: 396 acctcattcaagaattctctgattccctgatacgagtcattcgtgagaagtttgactgca 455
|||||||||| |||||||| ||| || ||||| |||||||| |||||||||||||||||
Sbjct: 16271 acctcattcaggaattctcggatgccttgataggagtcatttgtgagaagtttgactgcg 16212
Query: 456 atctctctcccatcagccaactttccatagtatactatgccaaagcctccngncccaatt 515
|| ||||||||||| | | |||||||||||||||||||||||| ||||| | ||||||
Sbjct: 16211 atttctctcccatctgtaagctttccatagtatactatgccaaaccctcccgaaccaatt 16152
Query: 516 cttctctcaaatttgccantagcattttcaatttcaga 553
||||| ||||||||| || |||||| ||||||||||||
Sbjct: 16151 cttctgtcaaatttgtcagtagcatcttcaatttcaga 16114
Score = 123 bits (62), Expect = 1e-025
Identities = 113/130 (86%)
Strand = Plus / Minus
Query: 270 ccacgaaggtgctcttttagtgtcccattatgcatgaactcatacactagtatgtttttg 329
||||| ||||| ||||||| ||||| ||||||||||| |||||||| ||||| |||||
Sbjct: 18377 ccacggaggtgttcttttaacgtcccgttatgcatgaattcatacacaagtatattttta 18318
Query: 330 ccatcttgctgactgtaaccaaggaatgtaaccaggtgtctatgatgtattctggaaagc 389
||||||||||| |||||||||||||| | ||||||| ||||||||| ||||| ||||||
Sbjct: 18317 ccatcttgctggctgtaaccaaggaagctcaccaggtttctatgatgaattcttgaaagc 18258
Query: 390 aatgtcacct 399
||||| ||||
Sbjct: 18257 aatgttacct 18248
Score = 58.0 bits (29), Expect = 6e-006
Identities = 56/65 (86%)
Strand = Plus / Minus
Query: 203 acctttcgcagaatcttctgcaatctcaagacgcttcagccagctagttatcttttcatt 262
|||||| |||| ||||||||| |||||||||||||| | ||||||| |||| ||| |||
Sbjct: 19014 accttttgcagcatcttctgctatctcaagacgcttgacccagctatttatttttacatc 18955
Query: 263 atcag 267
|||||
Sbjct: 18954 atcag 18950
>gb|CH401272.1| Oryza sativa (japonica cultivar-group) chromosome 12 scaffold000109
genomic scaffold, whole genome shotgun sequence
Length = 5753019
Score = 224 bits (113), Expect = 5e-056
Identities = 167/185 (90%)
Strand = Plus / Plus
Query: 18 tactctgggtccaggtatccaactgtccctcgaactatacttgacacatgagacccatcc 77
|||||||||||||| ||||||||||| |||| |||||||||||| ||||||||||| ||
Sbjct: 27156 tactctgggtccagatatccaactgttcctctaactatacttgatacatgagacccgtcg 27215
Query: 78 actgcaggtttcgaaagcccaaagtctgccacttttgctctcatgttcttgtctaggaga 137
|| ||||||| || | ||||||||||| ||||||||||||||||||||||| ||||||
Sbjct: 27216 acaacaggttttgacaagccaaagtctgcaacttttgctctcatgttcttgtcaaggaga 27275
Query: 138 atgttactgctcttcaggtctctatggatgattgttggggagcatcccgtgtggagatac 197
|||||||||||||| |||||||| |||||||| |||||||||||||| ||||||||||||
Sbjct: 27276 atgttactgctcttgaggtctctgtggatgatagttggggagcatcctgtgtggagatac 27335
Query: 198 tctat 202
|||||
Sbjct: 27336 tctat 27340
Score = 161 bits (81), Expect = 6e-037
Identities = 138/158 (87%)
Strand = Plus / Plus
Query: 396 acctcattcaagaattctctgattccctgatacgagtcattcgtgagaagtttgactgca 455
|||||||||| |||||||| ||| || ||||| |||||||| |||||||||||||||||
Sbjct: 30195 acctcattcaggaattctcggatgccttgataggagtcatttgtgagaagtttgactgcg 30254
Query: 456 atctctctcccatcagccaactttccatagtatactatgccaaagcctccngncccaatt 515
|| ||||||||||| | | |||||||||||||||||||||||| ||||| | ||||||
Sbjct: 30255 atttctctcccatctgtaagctttccatagtatactatgccaaaccctcccgaaccaatt 30314
Query: 516 cttctctcaaatttgccantagcattttcaatttcaga 553
||||| ||||||||| || |||||| ||||||||||||
Sbjct: 30315 cttctgtcaaatttgtcagtagcatcttcaatttcaga 30352
Score = 123 bits (62), Expect = 1e-025
Identities = 113/130 (86%)
Strand = Plus / Plus
Query: 270 ccacgaaggtgctcttttagtgtcccattatgcatgaactcatacactagtatgtttttg 329
||||| ||||| ||||||| ||||| ||||||||||| |||||||| ||||| |||||
Sbjct: 28089 ccacggaggtgttcttttaacgtcccgttatgcatgaattcatacacaagtatattttta 28148
Query: 330 ccatcttgctgactgtaaccaaggaatgtaaccaggtgtctatgatgtattctggaaagc 389
||||||||||| |||||||||||||| | ||||||| ||||||||| ||||| ||||||
Sbjct: 28149 ccatcttgctggctgtaaccaaggaagctcaccaggtttctatgatgaattcttgaaagc 28208
Query: 390 aatgtcacct 399
||||| ||||
Sbjct: 28209 aatgttacct 28218
Score = 58.0 bits (29), Expect = 6e-006
Identities = 56/65 (86%)
Strand = Plus / Plus
Query: 203 acctttcgcagaatcttctgcaatctcaagacgcttcagccagctagttatcttttcatt 262
|||||| |||| ||||||||| |||||||||||||| | ||||||| |||| ||| |||
Sbjct: 27452 accttttgcagcatcttctgctatctcaagacgcttgacccagctatttatttttacatc 27511
Query: 263 atcag 267
|||||
Sbjct: 27512 atcag 27516
>gb|CH401255.1| Oryza sativa (japonica cultivar-group) chromosome 11 scaffold000092
genomic scaffold, whole genome shotgun sequence
Length = 217735
Score = 224 bits (113), Expect = 5e-056
Identities = 167/185 (90%)
Strand = Plus / Plus
Query: 18 tactctgggtccaggtatccaactgtccctcgaactatacttgacacatgagacccatcc 77
|||||||||||||| ||||||||||| |||| |||||||||||| ||||||||||| ||
Sbjct: 192623 tactctgggtccagatatccaactgttcctctaactatacttgatacatgagacccgtcg 192682
Query: 78 actgcaggtttcgaaagcccaaagtctgccacttttgctctcatgttcttgtctaggaga 137
|| ||||||| || | ||||||||||| ||||||||||||||||||||||| ||||||
Sbjct: 192683 acaacaggttttgacaagccaaagtctgcaacttttgctctcatgttcttgtcaaggaga 192742
Query: 138 atgttactgctcttcaggtctctatggatgattgttggggagcatcccgtgtggagatac 197
|||||||||||||| |||||||| |||||||| |||||||||||||| ||||||||||||
Sbjct: 192743 atgttactgctcttgaggtctctgtggatgatagttggggagcatcctgtgtggagatac 192802
Query: 198 tctat 202
|||||
Sbjct: 192803 tctat 192807
Score = 168 bits (85), Expect = 2e-039
Identities = 139/158 (87%)
Strand = Plus / Plus
Query: 396 acctcattcaagaattctctgattccctgatacgagtcattcgtgagaagtttgactgca 455
||||||||||||||||||| ||| || ||||| |||||||| |||||||||||||||||
Sbjct: 195491 acctcattcaagaattctcggatgccttgataggagtcatttgtgagaagtttgactgcg 195550
Query: 456 atctctctcccatcagccaactttccatagtatactatgccaaagcctccngncccaatt 515
|| ||||||||||| | | |||||||||||||||||||||||| ||||| | ||||||
Sbjct: 195551 atttctctcccatctgtaagctttccatagtatactatgccaaaccctcccgaaccaatt 195610
Query: 516 cttctctcaaatttgccantagcattttcaatttcaga 553
||||| ||||||||| || |||||| ||||||||||||
Sbjct: 195611 cttctgtcaaatttgtcagtagcatcttcaatttcaga 195648
Score = 131 bits (66), Expect = 5e-028
Identities = 114/130 (87%)
Strand = Plus / Plus
Query: 270 ccacgaaggtgctcttttagtgtcccattatgcatgaactcatacactagtatgtttttg 329
||||| ||||||||||||| ||||| ||||||||||| |||||||| ||||| |||||
Sbjct: 193555 ccacggaggtgctcttttaacgtcccgttatgcatgaattcatacacaagtatattttta 193614
Query: 330 ccatcttgctgactgtaaccaaggaatgtaaccaggtgtctatgatgtattctggaaagc 389
||||||||||| |||||||||||||| | ||||||| ||||||||| ||||| ||||||
Sbjct: 193615 ccatcttgctggctgtaaccaaggaagctcaccaggtttctatgatgaattcttgaaagc 193674
Query: 390 aatgtcacct 399
||||| ||||
Sbjct: 193675 aatgttacct 193684
Score = 65.9 bits (33), Expect = 3e-008
Identities = 57/65 (87%)
Strand = Plus / Plus
Query: 203 acctttcgcagaatcttctgcaatctcaagacgcttcagccagctagttatcttttcatt 262
|||||| |||| ||||||||| |||||||||||||| | |||||||||||| ||| |||
Sbjct: 192918 accttttgcagcatcttctgctatctcaagacgcttgacccagctagttatttttacatc 192977
Query: 263 atcag 267
|||||
Sbjct: 192978 atcag 192982
>gb|CM000149.1| Oryza sativa (japonica cultivar-group) chromosome 12, whole genome
shotgun sequence
Length = 23730396
Score = 224 bits (113), Expect = 5e-056
Identities = 167/185 (90%)
Strand = Plus / Plus
Query: 18 tactctgggtccaggtatccaactgtccctcgaactatacttgacacatgagacccatcc 77
|||||||||||||| ||||||||||| |||| |||||||||||| ||||||||||| ||
Sbjct: 27156 tactctgggtccagatatccaactgttcctctaactatacttgatacatgagacccgtcg 27215
Query: 78 actgcaggtttcgaaagcccaaagtctgccacttttgctctcatgttcttgtctaggaga 137
|| ||||||| || | ||||||||||| ||||||||||||||||||||||| ||||||
Sbjct: 27216 acaacaggttttgacaagccaaagtctgcaacttttgctctcatgttcttgtcaaggaga 27275
Query: 138 atgttactgctcttcaggtctctatggatgattgttggggagcatcccgtgtggagatac 197
|||||||||||||| |||||||| |||||||| |||||||||||||| ||||||||||||
Sbjct: 27276 atgttactgctcttgaggtctctgtggatgatagttggggagcatcctgtgtggagatac 27335
Query: 198 tctat 202
|||||
Sbjct: 27336 tctat 27340
Score = 161 bits (81), Expect = 6e-037
Identities = 138/158 (87%)
Strand = Plus / Plus
Query: 396 acctcattcaagaattctctgattccctgatacgagtcattcgtgagaagtttgactgca 455
|||||||||| |||||||| ||| || ||||| |||||||| |||||||||||||||||
Sbjct: 30195 acctcattcaggaattctcggatgccttgataggagtcatttgtgagaagtttgactgcg 30254
Query: 456 atctctctcccatcagccaactttccatagtatactatgccaaagcctccngncccaatt 515
|| ||||||||||| | | |||||||||||||||||||||||| ||||| | ||||||
Sbjct: 30255 atttctctcccatctgtaagctttccatagtatactatgccaaaccctcccgaaccaatt 30314
Query: 516 cttctctcaaatttgccantagcattttcaatttcaga 553
||||| ||||||||| || |||||| ||||||||||||
Sbjct: 30315 cttctgtcaaatttgtcagtagcatcttcaatttcaga 30352
Score = 123 bits (62), Expect = 1e-025
Identities = 113/130 (86%)
Strand = Plus / Plus
Query: 270 ccacgaaggtgctcttttagtgtcccattatgcatgaactcatacactagtatgtttttg 329
||||| ||||| ||||||| ||||| ||||||||||| |||||||| ||||| |||||
Sbjct: 28089 ccacggaggtgttcttttaacgtcccgttatgcatgaattcatacacaagtatattttta 28148
Query: 330 ccatcttgctgactgtaaccaaggaatgtaaccaggtgtctatgatgtattctggaaagc 389
||||||||||| |||||||||||||| | ||||||| ||||||||| ||||| ||||||
Sbjct: 28149 ccatcttgctggctgtaaccaaggaagctcaccaggtttctatgatgaattcttgaaagc 28208
Query: 390 aatgtcacct 399
||||| ||||
Sbjct: 28209 aatgttacct 28218
Score = 58.0 bits (29), Expect = 6e-006
Identities = 56/65 (86%)
Strand = Plus / Plus
Query: 203 acctttcgcagaatcttctgcaatctcaagacgcttcagccagctagttatcttttcatt 262
|||||| |||| ||||||||| |||||||||||||| | ||||||| |||| ||| |||
Sbjct: 27452 accttttgcagcatcttctgctatctcaagacgcttgacccagctatttatttttacatc 27511
Query: 263 atcag 267
|||||
Sbjct: 27512 atcag 27516
>gb|CM000148.1| Oryza sativa (japonica cultivar-group) chromosome 11, whole genome
shotgun sequence
Length = 22593549
Score = 224 bits (113), Expect = 5e-056
Identities = 167/185 (90%)
Strand = Plus / Plus
Query: 18 tactctgggtccaggtatccaactgtccctcgaactatacttgacacatgagacccatcc 77
|||||||||||||| ||||||||||| |||| |||||||||||| ||||||||||| ||
Sbjct: 192623 tactctgggtccagatatccaactgttcctctaactatacttgatacatgagacccgtcg 192682
Query: 78 actgcaggtttcgaaagcccaaagtctgccacttttgctctcatgttcttgtctaggaga 137
|| ||||||| || | ||||||||||| ||||||||||||||||||||||| ||||||
Sbjct: 192683 acaacaggttttgacaagccaaagtctgcaacttttgctctcatgttcttgtcaaggaga 192742
Query: 138 atgttactgctcttcaggtctctatggatgattgttggggagcatcccgtgtggagatac 197
|||||||||||||| |||||||| |||||||| |||||||||||||| ||||||||||||
Sbjct: 192743 atgttactgctcttgaggtctctgtggatgatagttggggagcatcctgtgtggagatac 192802
Query: 198 tctat 202
|||||
Sbjct: 192803 tctat 192807
Score = 168 bits (85), Expect = 2e-039
Identities = 139/158 (87%)
Strand = Plus / Plus
Query: 396 acctcattcaagaattctctgattccctgatacgagtcattcgtgagaagtttgactgca 455
||||||||||||||||||| ||| || ||||| |||||||| |||||||||||||||||
Sbjct: 195491 acctcattcaagaattctcggatgccttgataggagtcatttgtgagaagtttgactgcg 195550
Query: 456 atctctctcccatcagccaactttccatagtatactatgccaaagcctccngncccaatt 515
|| ||||||||||| | | |||||||||||||||||||||||| ||||| | ||||||
Sbjct: 195551 atttctctcccatctgtaagctttccatagtatactatgccaaaccctcccgaaccaatt 195610
Query: 516 cttctctcaaatttgccantagcattttcaatttcaga 553
||||| ||||||||| || |||||| ||||||||||||
Sbjct: 195611 cttctgtcaaatttgtcagtagcatcttcaatttcaga 195648
Score = 131 bits (66), Expect = 5e-028
Identities = 114/130 (87%)
Strand = Plus / Plus
Query: 270 ccacgaaggtgctcttttagtgtcccattatgcatgaactcatacactagtatgtttttg 329
||||| ||||||||||||| ||||| ||||||||||| |||||||| ||||| |||||
Sbjct: 193555 ccacggaggtgctcttttaacgtcccgttatgcatgaattcatacacaagtatattttta 193614
Query: 330 ccatcttgctgactgtaaccaaggaatgtaaccaggtgtctatgatgtattctggaaagc 389
||||||||||| |||||||||||||| | ||||||| ||||||||| ||||| ||||||
Sbjct: 193615 ccatcttgctggctgtaaccaaggaagctcaccaggtttctatgatgaattcttgaaagc 193674
Query: 390 aatgtcacct 399
||||| ||||
Sbjct: 193675 aatgttacct 193684
Score = 65.9 bits (33), Expect = 3e-008
Identities = 57/65 (87%)
Strand = Plus / Plus
Query: 203 acctttcgcagaatcttctgcaatctcaagacgcttcagccagctagttatcttttcatt 262
|||||| |||| ||||||||| |||||||||||||| | |||||||||||| ||| |||
Sbjct: 192918 accttttgcagcatcttctgctatctcaagacgcttgacccagctagttatttttacatc 192977
Query: 263 atcag 267
|||||
Sbjct: 192978 atcag 192982
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11,
complete sequence
Length = 28386948
Score = 224 bits (113), Expect = 5e-056
Identities = 167/185 (90%)
Strand = Plus / Plus
Query: 18 tactctgggtccaggtatccaactgtccctcgaactatacttgacacatgagacccatcc 77
|||||||||||||| ||||||||||| |||| |||||||||||| ||||||||||| ||
Sbjct: 117158 tactctgggtccagatatccaactgttcctctaactatacttgatacatgagacccgtcg 117217
Query: 78 actgcaggtttcgaaagcccaaagtctgccacttttgctctcatgttcttgtctaggaga 137
|| ||||||| || | ||||||||||| ||||||||||||||||||||||| ||||||
Sbjct: 117218 acaacaggttttgacaagccaaagtctgcaacttttgctctcatgttcttgtcaaggaga 117277
Query: 138 atgttactgctcttcaggtctctatggatgattgttggggagcatcccgtgtggagatac 197
|||||||||||||| |||||||| |||||||| |||||||||||||| ||||||||||||
Sbjct: 117278 atgttactgctcttgaggtctctgtggatgatagttggggagcatcctgtgtggagatac 117337
Query: 198 tctat 202
|||||
Sbjct: 117338 tctat 117342
Score = 168 bits (85), Expect = 2e-039
Identities = 139/158 (87%)
Strand = Plus / Plus
Query: 396 acctcattcaagaattctctgattccctgatacgagtcattcgtgagaagtttgactgca 455
||||||||||||||||||| ||| || ||||| |||||||| |||||||||||||||||
Sbjct: 120026 acctcattcaagaattctcggatgccttgataggagtcatttgtgagaagtttgactgcg 120085
Query: 456 atctctctcccatcagccaactttccatagtatactatgccaaagcctccngncccaatt 515
|| ||||||||||| | | |||||||||||||||||||||||| ||||| | ||||||
Sbjct: 120086 atttctctcccatctgtaagctttccatagtatactatgccaaaccctcccgaaccaatt 120145
Query: 516 cttctctcaaatttgccantagcattttcaatttcaga 553
||||| ||||||||| || |||||| ||||||||||||
Sbjct: 120146 cttctgtcaaatttgtcagtagcatcttcaatttcaga 120183
Score = 131 bits (66), Expect = 5e-028
Identities = 114/130 (87%)
Strand = Plus / Plus
Query: 270 ccacgaaggtgctcttttagtgtcccattatgcatgaactcatacactagtatgtttttg 329
||||| ||||||||||||| ||||| ||||||||||| |||||||| ||||| |||||
Sbjct: 118090 ccacggaggtgctcttttaacgtcccgttatgcatgaattcatacacaagtatattttta 118149
Query: 330 ccatcttgctgactgtaaccaaggaatgtaaccaggtgtctatgatgtattctggaaagc 389
||||||||||| |||||||||||||| | ||||||| ||||||||| ||||| ||||||
Sbjct: 118150 ccatcttgctggctgtaaccaaggaagctcaccaggtttctatgatgaattcttgaaagc 118209
Query: 390 aatgtcacct 399
||||| ||||
Sbjct: 118210 aatgttacct 118219
Score = 65.9 bits (33), Expect = 3e-008
Identities = 57/65 (87%)
Strand = Plus / Plus
Query: 203 acctttcgcagaatcttctgcaatctcaagacgcttcagccagctagttatcttttcatt 262
|||||| |||| ||||||||| |||||||||||||| | |||||||||||| ||| |||
Sbjct: 117453 accttttgcagcatcttctgctatctcaagacgcttgacccagctagttatttttacatc 117512
Query: 263 atcag 267
|||||
Sbjct: 117513 atcag 117517
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12,
complete sequence
Length = 27566993
Score = 224 bits (113), Expect = 5e-056
Identities = 167/185 (90%)
Strand = Plus / Plus
Query: 18 tactctgggtccaggtatccaactgtccctcgaactatacttgacacatgagacccatcc 77
|||||||||||||| ||||||||||| |||| |||||||||||| ||||||||||| ||
Sbjct: 112769 tactctgggtccagatatccaactgttcctctaactatacttgatacatgagacccgtcg 112828
Query: 78 actgcaggtttcgaaagcccaaagtctgccacttttgctctcatgttcttgtctaggaga 137
|| ||||||| || | ||||||||||| ||||||||||||||||||||||| ||||||
Sbjct: 112829 acaacaggttttgacaagccaaagtctgcaacttttgctctcatgttcttgtcaaggaga 112888
Query: 138 atgttactgctcttcaggtctctatggatgattgttggggagcatcccgtgtggagatac 197
|||||||||||||| |||||||| |||||||| |||||||||||||| ||||||||||||
Sbjct: 112889 atgttactgctcttgaggtctctgtggatgatagttggggagcatcctgtgtggagatac 112948
Query: 198 tctat 202
|||||
Sbjct: 112949 tctat 112953
Score = 161 bits (81), Expect = 6e-037
Identities = 138/158 (87%)
Strand = Plus / Plus
Query: 396 acctcattcaagaattctctgattccctgatacgagtcattcgtgagaagtttgactgca 455
|||||||||| |||||||| ||| || ||||| |||||||| |||||||||||||||||
Sbjct: 115808 acctcattcaggaattctcggatgccttgataggagtcatttgtgagaagtttgactgcg 115867
Query: 456 atctctctcccatcagccaactttccatagtatactatgccaaagcctccngncccaatt 515
|| ||||||||||| | | |||||||||||||||||||||||| ||||| | ||||||
Sbjct: 115868 atttctctcccatctgtaagctttccatagtatactatgccaaaccctcccgaaccaatt 115927
Query: 516 cttctctcaaatttgccantagcattttcaatttcaga 553
||||| ||||||||| || |||||| ||||||||||||
Sbjct: 115928 cttctgtcaaatttgtcagtagcatcttcaatttcaga 115965
Score = 123 bits (62), Expect = 1e-025
Identities = 113/130 (86%)
Strand = Plus / Plus
Query: 270 ccacgaaggtgctcttttagtgtcccattatgcatgaactcatacactagtatgtttttg 329
||||| ||||| ||||||| ||||| ||||||||||| |||||||| ||||| |||||
Sbjct: 113702 ccacggaggtgttcttttaacgtcccgttatgcatgaattcatacacaagtatattttta 113761
Query: 330 ccatcttgctgactgtaaccaaggaatgtaaccaggtgtctatgatgtattctggaaagc 389
||||||||||| |||||||||||||| | ||||||| ||||||||| ||||| ||||||
Sbjct: 113762 ccatcttgctggctgtaaccaaggaagctcaccaggtttctatgatgaattcttgaaagc 113821
Query: 390 aatgtcacct 399
||||| ||||
Sbjct: 113822 aatgttacct 113831
Score = 58.0 bits (29), Expect = 6e-006
Identities = 56/65 (86%)
Strand = Plus / Plus
Query: 203 acctttcgcagaatcttctgcaatctcaagacgcttcagccagctagttatcttttcatt 262
|||||| |||| ||||||||| |||||||||||||| | ||||||| |||| ||| |||
Sbjct: 113065 accttttgcagcatcttctgctatctcaagacgcttgacccagctatttatttttacatc 113124
Query: 263 atcag 267
|||||
Sbjct: 113125 atcag 113129
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
Length = 28369397
Score = 224 bits (113), Expect = 5e-056
Identities = 167/185 (90%)
Strand = Plus / Plus
Query: 18 tactctgggtccaggtatccaactgtccctcgaactatacttgacacatgagacccatcc 77
|||||||||||||| ||||||||||| |||| |||||||||||| ||||||||||| ||
Sbjct: 117158 tactctgggtccagatatccaactgttcctctaactatacttgatacatgagacccgtcg 117217
Query: 78 actgcaggtttcgaaagcccaaagtctgccacttttgctctcatgttcttgtctaggaga 137
|| ||||||| || | ||||||||||| ||||||||||||||||||||||| ||||||
Sbjct: 117218 acaacaggttttgacaagccaaagtctgcaacttttgctctcatgttcttgtcaaggaga 117277
Query: 138 atgttactgctcttcaggtctctatggatgattgttggggagcatcccgtgtggagatac 197
|||||||||||||| |||||||| |||||||| |||||||||||||| ||||||||||||
Sbjct: 117278 atgttactgctcttgaggtctctgtggatgatagttggggagcatcctgtgtggagatac 117337
Query: 198 tctat 202
|||||
Sbjct: 117338 tctat 117342
Score = 168 bits (85), Expect = 2e-039
Identities = 139/158 (87%)
Strand = Plus / Plus
Query: 396 acctcattcaagaattctctgattccctgatacgagtcattcgtgagaagtttgactgca 455
||||||||||||||||||| ||| || ||||| |||||||| |||||||||||||||||
Sbjct: 120026 acctcattcaagaattctcggatgccttgataggagtcatttgtgagaagtttgactgcg 120085
Query: 456 atctctctcccatcagccaactttccatagtatactatgccaaagcctccngncccaatt 515
|| ||||||||||| | | |||||||||||||||||||||||| ||||| | ||||||
Sbjct: 120086 atttctctcccatctgtaagctttccatagtatactatgccaaaccctcccgaaccaatt 120145
Query: 516 cttctctcaaatttgccantagcattttcaatttcaga 553
||||| ||||||||| || |||||| ||||||||||||
Sbjct: 120146 cttctgtcaaatttgtcagtagcatcttcaatttcaga 120183
Score = 131 bits (66), Expect = 5e-028
Identities = 114/130 (87%)
Strand = Plus / Plus
Query: 270 ccacgaaggtgctcttttagtgtcccattatgcatgaactcatacactagtatgtttttg 329
||||| ||||||||||||| ||||| ||||||||||| |||||||| ||||| |||||
Sbjct: 118090 ccacggaggtgctcttttaacgtcccgttatgcatgaattcatacacaagtatattttta 118149
Query: 330 ccatcttgctgactgtaaccaaggaatgtaaccaggtgtctatgatgtattctggaaagc 389
||||||||||| |||||||||||||| | ||||||| ||||||||| ||||| ||||||
Sbjct: 118150 ccatcttgctggctgtaaccaaggaagctcaccaggtttctatgatgaattcttgaaagc 118209
Query: 390 aatgtcacct 399
||||| ||||
Sbjct: 118210 aatgttacct 118219
Score = 65.9 bits (33), Expect = 3e-008
Identities = 57/65 (87%)
Strand = Plus / Plus
Query: 203 acctttcgcagaatcttctgcaatctcaagacgcttcagccagctagttatcttttcatt 262
|||||| |||| ||||||||| |||||||||||||| | |||||||||||| ||| |||
Sbjct: 117453 accttttgcagcatcttctgctatctcaagacgcttgacccagctagttatttttacatc 117512
Query: 263 atcag 267
|||||
Sbjct: 117513 atcag 117517
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
Length = 27492551
Score = 224 bits (113), Expect = 5e-056
Identities = 167/185 (90%)
Strand = Plus / Plus
Query: 18 tactctgggtccaggtatccaactgtccctcgaactatacttgacacatgagacccatcc 77
|||||||||||||| ||||||||||| |||| |||||||||||| ||||||||||| ||
Sbjct: 112769 tactctgggtccagatatccaactgttcctctaactatacttgatacatgagacccgtcg 112828
Query: 78 actgcaggtttcgaaagcccaaagtctgccacttttgctctcatgttcttgtctaggaga 137
|| ||||||| || | ||||||||||| ||||||||||||||||||||||| ||||||
Sbjct: 112829 acaacaggttttgacaagccaaagtctgcaacttttgctctcatgttcttgtcaaggaga 112888
Query: 138 atgttactgctcttcaggtctctatggatgattgttggggagcatcccgtgtggagatac 197
|||||||||||||| |||||||| |||||||| |||||||||||||| ||||||||||||
Sbjct: 112889 atgttactgctcttgaggtctctgtggatgatagttggggagcatcctgtgtggagatac 112948
Query: 198 tctat 202
|||||
Sbjct: 112949 tctat 112953
Score = 161 bits (81), Expect = 6e-037
Identities = 138/158 (87%)
Strand = Plus / Plus
Query: 396 acctcattcaagaattctctgattccctgatacgagtcattcgtgagaagtttgactgca 455
|||||||||| |||||||| ||| || ||||| |||||||| |||||||||||||||||
Sbjct: 115808 acctcattcaggaattctcggatgccttgataggagtcatttgtgagaagtttgactgcg 115867
Query: 456 atctctctcccatcagccaactttccatagtatactatgccaaagcctccngncccaatt 515
|| ||||||||||| | | |||||||||||||||||||||||| ||||| | ||||||
Sbjct: 115868 atttctctcccatctgtaagctttccatagtatactatgccaaaccctcccgaaccaatt 115927
Query: 516 cttctctcaaatttgccantagcattttcaatttcaga 553
||||| ||||||||| || |||||| ||||||||||||
Sbjct: 115928 cttctgtcaaatttgtcagtagcatcttcaatttcaga 115965
Score = 123 bits (62), Expect = 1e-025
Identities = 113/130 (86%)
Strand = Plus / Plus
Query: 270 ccacgaaggtgctcttttagtgtcccattatgcatgaactcatacactagtatgtttttg 329
||||| ||||| ||||||| ||||| ||||||||||| |||||||| ||||| |||||
Sbjct: 113702 ccacggaggtgttcttttaacgtcccgttatgcatgaattcatacacaagtatattttta 113761
Query: 330 ccatcttgctgactgtaaccaaggaatgtaaccaggtgtctatgatgtattctggaaagc 389
||||||||||| |||||||||||||| | ||||||| ||||||||| ||||| ||||||
Sbjct: 113762 ccatcttgctggctgtaaccaaggaagctcaccaggtttctatgatgaattcttgaaagc 113821
Query: 390 aatgtcacct 399
||||| ||||
Sbjct: 113822 aatgttacct 113831
Score = 58.0 bits (29), Expect = 6e-006
Identities = 56/65 (86%)
Strand = Plus / Plus
Query: 203 acctttcgcagaatcttctgcaatctcaagacgcttcagccagctagttatcttttcatt 262
|||||| |||| ||||||||| |||||||||||||| | ||||||| |||| ||| |||
Sbjct: 113065 accttttgcagcatcttctgctatctcaagacgcttgacccagctatttatttttacatc 113124
Query: 263 atcag 267
|||||
Sbjct: 113125 atcag 113129
>gb|AQ863968.1|AQ863968 nbeb0022E20r CUGI Rice BAC Library (EcoRI) Oryza sativa (japonica
cultivar-group) genomic clone nbeb0022E20r, DNA sequence
Length = 438
Score = 139 bits (70), Expect = 2e-030
Identities = 127/147 (86%)
Strand = Plus / Plus
Query: 407 gaattctctgattccctgatacgagtcattcgtgagaagtttgactgcaatctctctccc 466
|||||||| ||| || ||||| |||||||| ||||||||||||||||| || ||||||||
Sbjct: 61 gaattctcggatgccttgataggagtcatttgtgagaagtttgactgcgatttctctccc 120
Query: 467 atcagccaactttccatagtatactatgccaaagcctccngncccaattcttctctcaaa 526
||| | | |||| ||||||||||||||||||| ||||| | ||||||||||| |||||
Sbjct: 121 atctgtaagcttttcatagtatactatgccaaaccctcccgaaccaattcttctgtcaaa 180
Query: 527 tttgccantagcattttcaatttcaga 553
|||| || |||||| ||||||||||||
Sbjct: 181 tttgtcagtagcatcttcaatttcaga 207
>gb|AU055711.1|AU055711 AU055711 Oryza sativa mature leaf Nipponbare Oryza sativa
(japonica cultivar-group) cDNA clone S20010_2Z, mRNA
sequence
Length = 715
Score = 60.0 bits (30), Expect = 2e-006
Identities = 52/58 (89%), Gaps = 1/58 (1%)
Strand = Plus / Minus
Query: 17 gtactctgggtccaggtatccaact-gtccctcgaactatacttgacacatgagaccc 73
||||||||||||||| ||||||||| || |||| |||||||||||| | |||||||||
Sbjct: 92 gtactctgggtccagatatccaactngttcctctaactatacttgataaatgagaccc 35
>dbj|AG213548.1| Oryza sativa (japonica cultivar-group) DNA, clone:T09682T, 3'
flanking sequence of Tos17 insertion in rice strain
ND4557, genomic survey sequence
Length = 353
Score = 44.1 bits (22), Expect = 0.097
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggtactc 22
||||||||||||||||||||||
Sbjct: 164 gcggccgcccgggcaggtactc 143
>dbj|AG024555.1| Oryza sativa (japonica cultivar-group) DNA, clone:T00101T, 3'
flanking sequence of Tos17 insertion in rice strain
H0388, genomic survey sequence
Length = 222
Score = 44.1 bits (22), Expect = 0.097
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggtactc 22
||||||||||||||||||||||
Sbjct: 214 gcggccgcccgggcaggtactc 193
>dbj|AB156800.1| Oryza sativa (japonica cultivar-group) DNA, clone:T25930T, 3'
flanking sequence of Tos17 insertion in rice strain
NF9028, genomic survey sequence
Length = 385
Score = 44.1 bits (22), Expect = 0.097
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggtactc 22
||||||||||||||||||||||
Sbjct: 334 gcggccgcccgggcaggtactc 313
>dbj|AB157563.2| Oryza sativa (japonica cultivar-group) DNA, clone:T28954T, 3'
flanking sequence of Tos17 insertion in rice strain
NG1070, genomic survey sequence
Length = 459
Score = 44.1 bits (22), Expect = 0.097
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggtactc 22
||||||||||||||||||||||
Sbjct: 444 gcggccgcccgggcaggtactc 423
>dbj|AG213126.1| Oryza sativa (japonica cultivar-group) DNA, clone:T00128T, 3'
flanking sequence of Tos17 insertion in rice strain
H0450, genomic survey sequence
Length = 222
Score = 42.1 bits (21), Expect = 0.38
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggtact 21
|||||||||||||||||||||
Sbjct: 220 gcggccgcccgggcaggtact 200
>dbj|AG213128.1| Oryza sativa (japonica cultivar-group) DNA, clone:T00161T, 3'
flanking sequence of Tos17 insertion in rice strain
H0592, genomic survey sequence
Length = 309
Score = 42.1 bits (21), Expect = 0.38
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggtact 21
|||||||||||||||||||||
Sbjct: 298 gcggccgcccgggcaggtact 278
>dbj|AG213723.1| Oryza sativa (japonica cultivar-group) DNA, clone:T10610T, 3'
flanking sequence of Tos17 insertion in rice strain
ND6065, genomic survey sequence
Length = 329
Score = 42.1 bits (21), Expect = 0.38
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggtact 21
|||||||||||||||||||||
Sbjct: 288 gcggccgcccgggcaggtact 268
>dbj|AG213908.1| Oryza sativa (japonica cultivar-group) DNA, clone:T11702T, 3'
flanking sequence of Tos17 insertion in rice strain
ND8064, genomic survey sequence
Length = 339
Score = 42.1 bits (21), Expect = 0.38
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggtact 21
|||||||||||||||||||||
Sbjct: 265 gcggccgcccgggcaggtact 245
>dbj|AG213976.1| Oryza sativa (japonica cultivar-group) DNA, clone:T11953T, 3'
flanking sequence of Tos17 insertion in rice strain
ND9058, genomic survey sequence
Length = 210
Score = 42.1 bits (21), Expect = 0.38
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggtact 21
|||||||||||||||||||||
Sbjct: 166 gcggccgcccgggcaggtact 146
>dbj|AG021086.1| Oryza sativa (japonica cultivar-group) DNA, clone:T00123T, 3'
flanking sequence of Tos17 insertion in rice strain
H0449, genomic survey sequence
Length = 381
Score = 42.1 bits (21), Expect = 0.38
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggtact 21
|||||||||||||||||||||
Sbjct: 373 gcggccgcccgggcaggtact 353
>dbj|AG024570.1| Oryza sativa (japonica cultivar-group) DNA, clone:T00181T, 3'
flanking sequence of Tos17 insertion in rice strain
H0615, genomic survey sequence
Length = 447
Score = 42.1 bits (21), Expect = 0.38
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggtact 21
|||||||||||||||||||||
Sbjct: 439 gcggccgcccgggcaggtact 419
>dbj|AB157529.1| Oryza sativa (japonica cultivar-group) DNA, clone:T28812T, 3'
flanking sequence of Tos17 insertion in rice strain
NG1017, genomic survey sequence
Length = 253
Score = 42.1 bits (21), Expect = 0.38
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggtact 21
|||||||||||||||||||||
Sbjct: 220 gcggccgcccgggcaggtact 200
>gb|CF452785.1|CF452785 EST00001 Subtracted cDNA library of JA/BTH-treated rice leaf
Oryza sativa (japonica cultivar-group) cDNA clone
JBI35, mRNA sequence
Length = 350
Score = 42.1 bits (21), Expect = 0.38
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 gcggccgcccgggcaggtact 21
|||||||||||||||||||||
Sbjct: 6 gcggccgcccgggcaggtact 26
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 692,537
Number of Sequences: 438736
Number of extensions: 692537
Number of successful extensions: 3135
Number of sequences better than 0.5: 35
Number of HSP's better than 0.5 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 3024
Number of HSP's gapped (non-prelim): 105
length of query: 681
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 660
effective length of database: 2,791,206,460
effective search space: 1842196263600
effective search space used: 1842196263600
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)