BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QCG16f05.yg.2.1
(585 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|AK072330.1| Oryza sativa (japonica cultivar-group) cDNA... 216 1e-053
ref|NM_191264.1| Oryza sativa (japonica cultivar-group), p... 216 1e-053
gb|CB000680.1|CB000680 S345J_F06 Rice cold stress germinati... 125 3e-026
gb|AACV01002365.1| Oryza sativa (japonica cultivar-group) c... 125 3e-026
dbj|BA000010.8| Oryza sativa (japonica cultivar-group) geno... 125 3e-026
ref|NT_079927.2| Oryza sativa (japonica cultivar-group) 125 3e-026
dbj|AP003249.3| Oryza sativa (japonica cultivar-group) geno... 125 3e-026
dbj|AP003268.4| Oryza sativa (japonica cultivar-group) geno... 125 3e-026
gb|CH401168.1| Oryza sativa (japonica cultivar-group) chrom... 125 3e-026
gb|CM000138.1| Oryza sativa (japonica cultivar-group) chrom... 125 3e-026
dbj|AP008207.1| Oryza sativa (japonica cultivar-group) geno... 125 3e-026
gb|CA999797.1|CA999797 S234J_D11 Rice cold stress germinati... 76 2e-011
gb|AQ796174.1|AQ796174 nbxb0062L17r CUGI Rice BAC Library O... 60 1e-006
>dbj|AK072330.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023039P13, full
insert sequence
Length = 2944
Score = 216 bits (109), Expect = 1e-053
Identities = 334/409 (81%)
Strand = Plus / Minus
Query: 23 gctggaacgtccaaatttccctgaggacacaacttggttcttttagaactagatgcagaa 82
||||| ||||||||||| |||||||| || || ||||||||||||||||| ||||| ||
Sbjct: 1650 gctggcacgtccaaattgccctgagggcataatttggttcttttagaactggatgccgac 1591
Query: 83 agggaatgagaaacagagacagaaccaccagctatctcgatttcccatggagatactcta 142
|| ||||||| |||||||| ||||||||| ||||||| || ||||||||||||||||||
Sbjct: 1590 agagaatgagcaacagagattgaaccaccaactatctcaatctcccatggagatactcta 1531
Query: 143 tcttggccattacattcagcaccgtcctcccatcttaccagcaggcttctccacttcgag 202
| ||||| || || |||| | | |||||||||| ||||| |||||||||||||| ||
Sbjct: 1530 ttttggctgttgcagtcagtagcatcctcccatcgaaccagaaggcttctccactttgaa 1471
Query: 203 ccaggccatttcatgggatctatttcactaatgcgaacaaccactccagatcgcctttca 262
||||||||| | ||||| |||| |||||||| | ||| || |||||| ||||| |||
Sbjct: 1470 ccaggccatctgatggggtctacttcactaacaccggcaatcattccagaacgcctctca 1411
Query: 263 ctaacatcttcattatggcactgaaagttgatccttgctccaatacagactggatgattg 322
||||||||||| | | | ||||| |||| ||| ||||||||| |||||||| |||
Sbjct: 1410 ttaacatcttcactctcaaaatgaaacttgaacctcattccaatacaaactggatggttg 1351
Query: 323 aggctcttcaggaacttagcgtatggaataatatattctgaagcagtagctcttggattg 382
| ||| |||| |||||| ||||||| || || || ||||||||||| ||||| |||
Sbjct: 1350 aagcttttcacgaacttccaatatggaacaacgtactcagaagcagtagcccttgggttg 1291
Query: 383 taagaaatgtgaaaaacacttctgttcttcaaggaatcagctacagccg 431
||| |||||||||||||||||| | |||||||||||||| |||||||
Sbjct: 1290 taacaaatgtgaaaaacacttccatgtttcaaggaatcagccacagccg 1242
>ref|NM_191264.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 1758
Score = 216 bits (109), Expect = 1e-053
Identities = 334/409 (81%)
Strand = Plus / Minus
Query: 23 gctggaacgtccaaatttccctgaggacacaacttggttcttttagaactagatgcagaa 82
||||| ||||||||||| |||||||| || || ||||||||||||||||| ||||| ||
Sbjct: 1181 gctggcacgtccaaattgccctgagggcataatttggttcttttagaactggatgccgac 1122
Query: 83 agggaatgagaaacagagacagaaccaccagctatctcgatttcccatggagatactcta 142
|| ||||||| |||||||| ||||||||| ||||||| || ||||||||||||||||||
Sbjct: 1121 agagaatgagcaacagagattgaaccaccaactatctcaatctcccatggagatactcta 1062
Query: 143 tcttggccattacattcagcaccgtcctcccatcttaccagcaggcttctccacttcgag 202
| ||||| || || |||| | | |||||||||| ||||| |||||||||||||| ||
Sbjct: 1061 ttttggctgttgcagtcagtagcatcctcccatcgaaccagaaggcttctccactttgaa 1002
Query: 203 ccaggccatttcatgggatctatttcactaatgcgaacaaccactccagatcgcctttca 262
||||||||| | ||||| |||| |||||||| | ||| || |||||| ||||| |||
Sbjct: 1001 ccaggccatctgatggggtctacttcactaacaccggcaatcattccagaacgcctctca 942
Query: 263 ctaacatcttcattatggcactgaaagttgatccttgctccaatacagactggatgattg 322
||||||||||| | | | ||||| |||| ||| ||||||||| |||||||| |||
Sbjct: 941 ttaacatcttcactctcaaaatgaaacttgaacctcattccaatacaaactggatggttg 882
Query: 323 aggctcttcaggaacttagcgtatggaataatatattctgaagcagtagctcttggattg 382
| ||| |||| |||||| ||||||| || || || ||||||||||| ||||| |||
Sbjct: 881 aagcttttcacgaacttccaatatggaacaacgtactcagaagcagtagcccttgggttg 822
Query: 383 taagaaatgtgaaaaacacttctgttcttcaaggaatcagctacagccg 431
||| |||||||||||||||||| | |||||||||||||| |||||||
Sbjct: 821 taacaaatgtgaaaaacacttccatgtttcaaggaatcagccacagccg 773
>gb|CB000680.1|CB000680 S345J_F06 Rice cold stress germination cDNA library Oryza sativa
(japonica cultivar-group) cDNA 5', mRNA sequence
Length = 301
Score = 125 bits (63), Expect = 3e-026
Identities = 222/275 (80%)
Strand = Plus / Minus
Query: 65 ttagaactagatgcagaaagggaatgagaaacagagacagaaccaccagctatctcgatt 124
|||||||| ||||| || || ||||||| |||||||| ||||||||| ||||||| ||
Sbjct: 301 ttagaactggatgccgacagagaatgagcaacagagattgaaccaccaactatctcaatc 242
Query: 125 tcccatggagatactctatcttggccattacattcagcaccgtcctcccatcttaccagc 184
||||||||||||||||||| ||||| || || |||| | | |||||||||| |||||
Sbjct: 241 tcccatggagatactctattttggctgttgcagtcagtagcatcctcccatcgaaccaga 182
Query: 185 aggcttctccacttcgagccaggccatttcatgggatctatttcactaatgcgaacaacc 244
|||||||||||||| || ||||||||| | ||||| |||| |||||||| | ||| |
Sbjct: 181 aggcttctccactttgaaccaggccatctgatggggtctacttcactaacaccggcaatc 122
Query: 245 actccagatcgcctttcactaacatcttcattatggcactgaaagttgatccttgctcca 304
| |||||| ||||| ||| ||||||||||| | | | ||||| |||| ||| ||||
Sbjct: 121 attccagaacgcctctcattaacatcttcactctcaaaatgaaacttgaacctcattcca 62
Query: 305 atacagactggatgattgaggctcttcaggaactt 339
||||| |||||||| |||| ||| |||| ||||||
Sbjct: 61 atacaaactggatggttgaagcttttcacgaactt 27
>gb|AACV01002365.1| Oryza sativa (japonica cultivar-group) chromosome 1 Ctg002365, whole
genome shotgun sequence
Length = 14103
Score = 125 bits (63), Expect = 3e-026
Identities = 111/127 (87%)
Strand = Plus / Plus
Query: 23 gctggaacgtccaaatttccctgaggacacaacttggttcttttagaactagatgcagaa 82
||||| ||||||||||| |||||||| || || ||||||||||||||||| ||||| ||
Sbjct: 4277 gctggcacgtccaaattgccctgagggcataatttggttcttttagaactggatgccgac 4336
Query: 83 agggaatgagaaacagagacagaaccaccagctatctcgatttcccatggagatactcta 142
|| ||||||| |||||||| ||||||||| ||||||| || ||||||||||||||||||
Sbjct: 4337 agagaatgagcaacagagattgaaccaccaactatctcaatctcccatggagatactcta 4396
Query: 143 tcttggc 149
| |||||
Sbjct: 4397 ttttggc 4403
Score = 60.0 bits (30), Expect = 1e-006
Identities = 51/58 (87%)
Strand = Plus / Plus
Query: 374 cttggattgtaagaaatgtgaaaaacacttctgttcttcaaggaatcagctacagccg 431
||||| |||||| |||||||||||||||||| | |||||||||||||| |||||||
Sbjct: 6194 cttgggttgtaacaaatgtgaaaaacacttccatgtttcaaggaatcagccacagccg 6251
Score = 56.0 bits (28), Expect = 2e-005
Identities = 49/56 (87%)
Strand = Plus / Plus
Query: 178 taccagcaggcttctccacttcgagccaggccatttcatgggatctatttcactaa 233
|||||| |||||||||||||| || ||||||||| | ||||| |||| ||||||||
Sbjct: 5802 taccagaaggcttctccactttgaaccaggccatctgatggggtctacttcactaa 5857
>dbj|BA000010.8| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43342410
Score = 125 bits (63), Expect = 3e-026
Identities = 111/127 (87%)
Strand = Plus / Plus
Query: 23 gctggaacgtccaaatttccctgaggacacaacttggttcttttagaactagatgcagaa 82
||||| ||||||||||| |||||||| || || ||||||||||||||||| ||||| ||
Sbjct: 31692605 gctggcacgtccaaattgccctgagggcataatttggttcttttagaactggatgccgac 31692664
Query: 83 agggaatgagaaacagagacagaaccaccagctatctcgatttcccatggagatactcta 142
|| ||||||| |||||||| ||||||||| ||||||| || ||||||||||||||||||
Sbjct: 31692665 agagaatgagcaacagagattgaaccaccaactatctcaatctcccatggagatactcta 31692724
Query: 143 tcttggc 149
| |||||
Sbjct: 31692725 ttttggc 31692731
Score = 60.0 bits (30), Expect = 1e-006
Identities = 51/58 (87%)
Strand = Plus / Plus
Query: 374 cttggattgtaagaaatgtgaaaaacacttctgttcttcaaggaatcagctacagccg 431
||||| |||||| |||||||||||||||||| | |||||||||||||| |||||||
Sbjct: 31694522 cttgggttgtaacaaatgtgaaaaacacttccatgtttcaaggaatcagccacagccg 31694579
Score = 56.0 bits (28), Expect = 2e-005
Identities = 49/56 (87%)
Strand = Plus / Plus
Query: 178 taccagcaggcttctccacttcgagccaggccatttcatgggatctatttcactaa 233
|||||| |||||||||||||| || ||||||||| | ||||| |||| ||||||||
Sbjct: 31694130 taccagaaggcttctccactttgaaccaggccatctgatggggtctacttcactaa 31694185
>ref|NT_079927.2| Oryza sativa (japonica cultivar-group)
Length = 14818989
Score = 125 bits (63), Expect = 3e-026
Identities = 111/127 (87%)
Strand = Plus / Plus
Query: 23 gctggaacgtccaaatttccctgaggacacaacttggttcttttagaactagatgcagaa 82
||||| ||||||||||| |||||||| || || ||||||||||||||||| ||||| ||
Sbjct: 6139988 gctggcacgtccaaattgccctgagggcataatttggttcttttagaactggatgccgac 6140047
Query: 83 agggaatgagaaacagagacagaaccaccagctatctcgatttcccatggagatactcta 142
|| ||||||| |||||||| ||||||||| ||||||| || ||||||||||||||||||
Sbjct: 6140048 agagaatgagcaacagagattgaaccaccaactatctcaatctcccatggagatactcta 6140107
Query: 143 tcttggc 149
| |||||
Sbjct: 6140108 ttttggc 6140114
Score = 60.0 bits (30), Expect = 1e-006
Identities = 51/58 (87%)
Strand = Plus / Plus
Query: 374 cttggattgtaagaaatgtgaaaaacacttctgttcttcaaggaatcagctacagccg 431
||||| |||||| |||||||||||||||||| | |||||||||||||| |||||||
Sbjct: 6141905 cttgggttgtaacaaatgtgaaaaacacttccatgtttcaaggaatcagccacagccg 6141962
Score = 56.0 bits (28), Expect = 2e-005
Identities = 49/56 (87%)
Strand = Plus / Plus
Query: 178 taccagcaggcttctccacttcgagccaggccatttcatgggatctatttcactaa 233
|||||| |||||||||||||| || ||||||||| | ||||| |||| ||||||||
Sbjct: 6141513 taccagaaggcttctccactttgaaccaggccatctgatggggtctacttcactaa 6141568
>dbj|AP003249.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
clone:P0435B05
Length = 150997
Score = 125 bits (63), Expect = 3e-026
Identities = 111/127 (87%)
Strand = Plus / Plus
Query: 23 gctggaacgtccaaatttccctgaggacacaacttggttcttttagaactagatgcagaa 82
||||| ||||||||||| |||||||| || || ||||||||||||||||| ||||| ||
Sbjct: 124958 gctggcacgtccaaattgccctgagggcataatttggttcttttagaactggatgccgac 125017
Query: 83 agggaatgagaaacagagacagaaccaccagctatctcgatttcccatggagatactcta 142
|| ||||||| |||||||| ||||||||| ||||||| || ||||||||||||||||||
Sbjct: 125018 agagaatgagcaacagagattgaaccaccaactatctcaatctcccatggagatactcta 125077
Query: 143 tcttggc 149
| |||||
Sbjct: 125078 ttttggc 125084
Score = 60.0 bits (30), Expect = 1e-006
Identities = 51/58 (87%)
Strand = Plus / Plus
Query: 374 cttggattgtaagaaatgtgaaaaacacttctgttcttcaaggaatcagctacagccg 431
||||| |||||| |||||||||||||||||| | |||||||||||||| |||||||
Sbjct: 126875 cttgggttgtaacaaatgtgaaaaacacttccatgtttcaaggaatcagccacagccg 126932
Score = 56.0 bits (28), Expect = 2e-005
Identities = 49/56 (87%)
Strand = Plus / Plus
Query: 178 taccagcaggcttctccacttcgagccaggccatttcatgggatctatttcactaa 233
|||||| |||||||||||||| || ||||||||| | ||||| |||| ||||||||
Sbjct: 126483 taccagaaggcttctccactttgaaccaggccatctgatggggtctacttcactaa 126538
>dbj|AP003268.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
clone:P0503C12
Length = 147180
Score = 125 bits (63), Expect = 3e-026
Identities = 111/127 (87%)
Strand = Plus / Plus
Query: 23 gctggaacgtccaaatttccctgaggacacaacttggttcttttagaactagatgcagaa 82
||||| ||||||||||| |||||||| || || ||||||||||||||||| ||||| ||
Sbjct: 25667 gctggcacgtccaaattgccctgagggcataatttggttcttttagaactggatgccgac 25726
Query: 83 agggaatgagaaacagagacagaaccaccagctatctcgatttcccatggagatactcta 142
|| ||||||| |||||||| ||||||||| ||||||| || ||||||||||||||||||
Sbjct: 25727 agagaatgagcaacagagattgaaccaccaactatctcaatctcccatggagatactcta 25786
Query: 143 tcttggc 149
| |||||
Sbjct: 25787 ttttggc 25793
Score = 60.0 bits (30), Expect = 1e-006
Identities = 51/58 (87%)
Strand = Plus / Plus
Query: 374 cttggattgtaagaaatgtgaaaaacacttctgttcttcaaggaatcagctacagccg 431
||||| |||||| |||||||||||||||||| | |||||||||||||| |||||||
Sbjct: 27584 cttgggttgtaacaaatgtgaaaaacacttccatgtttcaaggaatcagccacagccg 27641
Score = 56.0 bits (28), Expect = 2e-005
Identities = 49/56 (87%)
Strand = Plus / Plus
Query: 178 taccagcaggcttctccacttcgagccaggccatttcatgggatctatttcactaa 233
|||||| |||||||||||||| || ||||||||| | ||||| |||| ||||||||
Sbjct: 27192 taccagaaggcttctccactttgaaccaggccatctgatggggtctacttcactaa 27247
>gb|CH401168.1| Oryza sativa (japonica cultivar-group) chromosome 1 scaffold000005 genomic
scaffold, whole genome shotgun sequence
Length = 17394610
Score = 125 bits (63), Expect = 3e-026
Identities = 111/127 (87%)
Strand = Plus / Plus
Query: 23 gctggaacgtccaaatttccctgaggacacaacttggttcttttagaactagatgcagaa 82
||||| ||||||||||| |||||||| || || ||||||||||||||||| ||||| ||
Sbjct: 6042283 gctggcacgtccaaattgccctgagggcataatttggttcttttagaactggatgccgac 6042342
Query: 83 agggaatgagaaacagagacagaaccaccagctatctcgatttcccatggagatactcta 142
|| ||||||| |||||||| ||||||||| ||||||| || ||||||||||||||||||
Sbjct: 6042343 agagaatgagcaacagagattgaaccaccaactatctcaatctcccatggagatactcta 6042402
Query: 143 tcttggc 149
| |||||
Sbjct: 6042403 ttttggc 6042409
Score = 60.0 bits (30), Expect = 1e-006
Identities = 51/58 (87%)
Strand = Plus / Plus
Query: 374 cttggattgtaagaaatgtgaaaaacacttctgttcttcaaggaatcagctacagccg 431
||||| |||||| |||||||||||||||||| | |||||||||||||| |||||||
Sbjct: 6044200 cttgggttgtaacaaatgtgaaaaacacttccatgtttcaaggaatcagccacagccg 6044257
Score = 56.0 bits (28), Expect = 2e-005
Identities = 49/56 (87%)
Strand = Plus / Plus
Query: 178 taccagcaggcttctccacttcgagccaggccatttcatgggatctatttcactaa 233
|||||| |||||||||||||| || ||||||||| | ||||| |||| ||||||||
Sbjct: 6043808 taccagaaggcttctccactttgaaccaggccatctgatggggtctacttcactaa 6043863
>gb|CM000138.1| Oryza sativa (japonica cultivar-group) chromosome 1, whole genome shotgun
sequence
Length = 42596331
Score = 125 bits (63), Expect = 3e-026
Identities = 111/127 (87%)
Strand = Plus / Plus
Query: 23 gctggaacgtccaaatttccctgaggacacaacttggttcttttagaactagatgcagaa 82
||||| ||||||||||| |||||||| || || ||||||||||||||||| ||||| ||
Sbjct: 31244004 gctggcacgtccaaattgccctgagggcataatttggttcttttagaactggatgccgac 31244063
Query: 83 agggaatgagaaacagagacagaaccaccagctatctcgatttcccatggagatactcta 142
|| ||||||| |||||||| ||||||||| ||||||| || ||||||||||||||||||
Sbjct: 31244064 agagaatgagcaacagagattgaaccaccaactatctcaatctcccatggagatactcta 31244123
Query: 143 tcttggc 149
| |||||
Sbjct: 31244124 ttttggc 31244130
Score = 60.0 bits (30), Expect = 1e-006
Identities = 51/58 (87%)
Strand = Plus / Plus
Query: 374 cttggattgtaagaaatgtgaaaaacacttctgttcttcaaggaatcagctacagccg 431
||||| |||||| |||||||||||||||||| | |||||||||||||| |||||||
Sbjct: 31245921 cttgggttgtaacaaatgtgaaaaacacttccatgtttcaaggaatcagccacagccg 31245978
Score = 56.0 bits (28), Expect = 2e-005
Identities = 49/56 (87%)
Strand = Plus / Plus
Query: 178 taccagcaggcttctccacttcgagccaggccatttcatgggatctatttcactaa 233
|||||| |||||||||||||| || ||||||||| | ||||| |||| ||||||||
Sbjct: 31245529 taccagaaggcttctccactttgaaccaggccatctgatggggtctacttcactaa 31245584
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43261740
Score = 125 bits (63), Expect = 3e-026
Identities = 111/127 (87%)
Strand = Plus / Plus
Query: 23 gctggaacgtccaaatttccctgaggacacaacttggttcttttagaactagatgcagaa 82
||||| ||||||||||| |||||||| || || ||||||||||||||||| ||||| ||
Sbjct: 31611935 gctggcacgtccaaattgccctgagggcataatttggttcttttagaactggatgccgac 31611994
Query: 83 agggaatgagaaacagagacagaaccaccagctatctcgatttcccatggagatactcta 142
|| ||||||| |||||||| ||||||||| ||||||| || ||||||||||||||||||
Sbjct: 31611995 agagaatgagcaacagagattgaaccaccaactatctcaatctcccatggagatactcta 31612054
Query: 143 tcttggc 149
| |||||
Sbjct: 31612055 ttttggc 31612061
Score = 60.0 bits (30), Expect = 1e-006
Identities = 51/58 (87%)
Strand = Plus / Plus
Query: 374 cttggattgtaagaaatgtgaaaaacacttctgttcttcaaggaatcagctacagccg 431
||||| |||||| |||||||||||||||||| | |||||||||||||| |||||||
Sbjct: 31613852 cttgggttgtaacaaatgtgaaaaacacttccatgtttcaaggaatcagccacagccg 31613909
Score = 56.0 bits (28), Expect = 2e-005
Identities = 49/56 (87%)
Strand = Plus / Plus
Query: 178 taccagcaggcttctccacttcgagccaggccatttcatgggatctatttcactaa 233
|||||| |||||||||||||| || ||||||||| | ||||| |||| ||||||||
Sbjct: 31613460 taccagaaggcttctccactttgaaccaggccatctgatggggtctacttcactaa 31613515
>gb|CA999797.1|CA999797 S234J_D11 Rice cold stress germination cDNA library Oryza sativa
(japonica cultivar-group) cDNA 5', mRNA sequence
Length = 236
Score = 75.8 bits (38), Expect = 2e-011
Identities = 167/210 (79%)
Strand = Plus / Minus
Query: 130 tggagatactctatcttggccattacattcagcaccgtcctcccatcttaccagcaggct 189
|||||||||||||| ||||| || || |||| | | |||||||||| ||||| |||||
Sbjct: 236 tggagatactctattttggctgttgcagtcagtagcatcctcccatcgaaccagaaggct 177
Query: 190 tctccacttcgagccaggccatttcatgggatctatttcactaatgcgaacaaccactcc 249
||||||||| || ||||||||| | ||||| |||| |||||||| | ||| || |||
Sbjct: 176 tctccactttgaaccaggccatctgatggggtctacttcactaacaccggcaatcattcc 117
Query: 250 agatcgcctttcactaacatcttcattatggcactgaaagttgatccttgctccaataca 309
||| ||||| ||| ||||||||||| | | | ||||| |||| ||| |||||||||
Sbjct: 116 agaacgcctctcattaacatcttcactctcaaaatgaaacttgaacctcattccaataca 57
Query: 310 gactggatgattgaggctcttcaggaactt 339
|||||||| |||| ||| |||| ||||||
Sbjct: 56 aactggatggttgaagcttttcacgaactt 27
>gb|AQ796174.1|AQ796174 nbxb0062L17r CUGI Rice BAC Library Oryza sativa (japonica
cultivar-group) genomic clone nbxb0062L17r, DNA sequence
Length = 491
Score = 60.0 bits (30), Expect = 1e-006
Identities = 51/58 (87%)
Strand = Plus / Minus
Query: 374 cttggattgtaagaaatgtgaaaaacacttctgttcttcaaggaatcagctacagccg 431
||||| |||||| |||||||||||||||||| | |||||||||||||| |||||||
Sbjct: 92 cttgggttgtaacaaatgtgaaaaacacttccatgtttcaaggaatcagccacagccg 35
Score = 56.0 bits (28), Expect = 2e-005
Identities = 49/56 (87%)
Strand = Plus / Minus
Query: 178 taccagcaggcttctccacttcgagccaggccatttcatgggatctatttcactaa 233
|||||| |||||||||||||| || ||||||||| | ||||| |||| ||||||||
Sbjct: 484 taccagaaggcttctccactttgaaccaggccatctgatggggtctacttcactaa 429
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 631,508
Number of Sequences: 438736
Number of extensions: 631508
Number of successful extensions: 10587
Number of sequences better than 0.5: 13
Number of HSP's better than 0.5 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 10448
Number of HSP's gapped (non-prelim): 135
length of query: 585
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 564
effective length of database: 2,791,206,460
effective search space: 1574240443440
effective search space used: 1574240443440
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)