BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QCG13d12.yg.2.1
(755 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AY324384.1| Oryza sativa (japonica cultivar-group) callo... 521 e-145
ref|XM_468556.1| Oryza sativa (japonica cultivar-group), mRNA 521 e-145
gb|CB675632.1|CB675632 OSJNEe11H21.r OSJNEe Oryza sativa (j... 188 3e-045
gb|AZ047463.1|AZ047463 nbeb0094M21f CUGI Rice BAC Library (... 141 6e-031
ref|NT_107235.1| Oryza sativa (japonica cultivar-group) 141 6e-031
dbj|AP004685.3| Oryza sativa (japonica cultivar-group) geno... 141 6e-031
dbj|AP005750.3| Oryza sativa (japonica cultivar-group) geno... 141 6e-031
gb|AACV01014975.1| Oryza sativa (japonica cultivar-group) c... 141 6e-031
gb|CH401216.1| Oryza sativa (japonica cultivar-group) chrom... 141 6e-031
gb|CM000143.1| Oryza sativa (japonica cultivar-group) chrom... 141 6e-031
dbj|AP008212.1| Oryza sativa (japonica cultivar-group) geno... 141 6e-031
dbj|AP004082.3| Oryza sativa (japonica cultivar-group) geno... 131 6e-028
dbj|AP005290.2| Oryza sativa (japonica cultivar-group) geno... 131 6e-028
gb|AACV01005686.1| Oryza sativa (japonica cultivar-group) c... 131 6e-028
ref|NT_107182.1| Oryza sativa (japonica cultivar-group) 131 6e-028
gb|CH401170.1| Oryza sativa (japonica cultivar-group) chrom... 131 6e-028
gb|CM000139.1| Oryza sativa (japonica cultivar-group) chrom... 131 6e-028
dbj|AP008208.1| Oryza sativa (japonica cultivar-group) geno... 131 6e-028
gb|AACV01014976.1| Oryza sativa (japonica cultivar-group) c... 100 2e-018
ref|NM_187591.1| Oryza sativa (japonica cultivar-group), p... 88 8e-015
gb|AQ363486.2|AQ363486 nbxb0059C14r CUGI Rice BAC Library O... 68 7e-009
gb|AACV01001413.1| Oryza sativa (japonica cultivar-group) c... 68 7e-009
dbj|BA000010.8| Oryza sativa (japonica cultivar-group) geno... 68 7e-009
ref|NM_193203.1| Oryza sativa (japonica cultivar-group), p... 68 7e-009
ref|NM_193211.1| Oryza sativa (japonica cultivar-group), p... 68 7e-009
ref|NT_079926.2| Oryza sativa (japonica cultivar-group) 68 7e-009
dbj|AP003447.2| Oryza sativa (japonica cultivar-group) geno... 68 7e-009
dbj|AP003445.2| Oryza sativa (japonica cultivar-group) geno... 68 7e-009
gb|CH401166.1| Oryza sativa (japonica cultivar-group) chrom... 68 7e-009
gb|CM000138.1| Oryza sativa (japonica cultivar-group) chrom... 68 7e-009
dbj|AP008207.1| Oryza sativa (japonica cultivar-group) geno... 68 7e-009
dbj|AB157838.1| Oryza sativa (japonica cultivar-group) DNA,... 64 1e-007
gb|AACV01001409.1| Oryza sativa (japonica cultivar-group) c... 64 1e-007
dbj|AG022680.1| Oryza sativa (japonica cultivar-group) DNA,... 62 5e-007
gb|AC104427.2| Oryza sativa (japonica cultivar-group) chrom... 62 5e-007
gb|AC144426.1| Oryza sativa (japonica cultivar-group) chrom... 62 5e-007
gb|AACV01005795.1| Oryza sativa (japonica cultivar-group) c... 62 5e-007
ref|NT_107183.1| Oryza sativa (japonica cultivar-group) 62 5e-007
gb|CH401173.1| Oryza sativa (japonica cultivar-group) chrom... 62 5e-007
gb|CM000140.1| Oryza sativa (japonica cultivar-group) chrom... 62 5e-007
dbj|AP008209.1| Oryza sativa (japonica cultivar-group) geno... 62 5e-007
gb|DP000009.1| Oryza sativa (japonica cultivar-group) chrom... 62 5e-007
dbj|AK062279.1| Oryza sativa (japonica cultivar-group) cDNA... 60 2e-006
dbj|AK100271.1| Oryza sativa (japonica cultivar-group) cDNA... 60 2e-006
gb|CG409152.1|CG409152 Ds848 Ds insertion lines Oryza sativ... 52 4e-004
gb|CG409286.1|CG409286 Ds982 Ds insertion lines Oryza sativ... 52 4e-004
dbj|AG213548.1| Oryza sativa (japonica cultivar-group) DNA,... 46 0.027
dbj|AG024555.1| Oryza sativa (japonica cultivar-group) DNA,... 46 0.027
gb|CB671521.1|CB671521 OSJNEe05C09.f OSJNEe Oryza sativa (j... 46 0.027
dbj|AK099782.1| Oryza sativa (japonica cultivar-group) cDNA... 46 0.027
dbj|AK120195.1| Oryza sativa (japonica cultivar-group) cDNA... 46 0.027
dbj|AK120402.1| Oryza sativa (japonica cultivar-group) cDNA... 46 0.027
gb|AACV01002367.1| Oryza sativa (japonica cultivar-group) c... 46 0.027
ref|NM_187562.1| Oryza sativa (japonica cultivar-group), p... 46 0.027
ref|NM_191270.1| Oryza sativa (japonica cultivar-group), p... 46 0.027
ref|NT_079927.2| Oryza sativa (japonica cultivar-group) 46 0.027
dbj|AP003249.3| Oryza sativa (japonica cultivar-group) geno... 46 0.027
dbj|AP003268.4| Oryza sativa (japonica cultivar-group) geno... 46 0.027
gb|CH401168.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.027
dbj|AG211703.1| Oryza sativa (japonica cultivar-group) DNA,... 44 0.11
dbj|AG024889.1| Oryza sativa (japonica cultivar-group) DNA,... 44 0.11
dbj|AB156800.1| Oryza sativa (japonica cultivar-group) DNA,... 44 0.11
dbj|AB157563.2| Oryza sativa (japonica cultivar-group) DNA,... 44 0.11
gb|CF307470.1|CF307470 HDA1--06-M20.g1 OsHDAC1-overexpressi... 44 0.11
dbj|AP003454.1| Oryza sativa (japonica cultivar-group) chro... 44 0.11
dbj|AK069531.1| Oryza sativa (japonica cultivar-group) cDNA... 44 0.11
gb|AACV01012882.1| Oryza sativa (japonica cultivar-group) c... 44 0.11
gb|AACV01013162.1| Oryza sativa (japonica cultivar-group) c... 44 0.11
dbj|AP001552.1| Oryza sativa (japonica cultivar-group) gene... 44 0.11
dbj|AP001389.1| Oryza sativa (japonica cultivar-group) geno... 44 0.11
dbj|AP007226.1| Oryza sativa (japonica cultivar-group) geno... 44 0.11
dbj|AP007257.2| Oryza sativa (japonica cultivar-group) geno... 44 0.11
ref|XM_550490.1| Oryza sativa (japonica cultivar-group), mRNA 44 0.11
ref|NT_107230.2| Oryza sativa (japonica cultivar-group) 44 0.11
gb|CH401209.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.11
dbj|AG213126.1| Oryza sativa (japonica cultivar-group) DNA,... 42 0.43
dbj|AG213128.1| Oryza sativa (japonica cultivar-group) DNA,... 42 0.43
dbj|AG213723.1| Oryza sativa (japonica cultivar-group) DNA,... 42 0.43
dbj|AG213908.1| Oryza sativa (japonica cultivar-group) DNA,... 42 0.43
dbj|AG213976.1| Oryza sativa (japonica cultivar-group) DNA,... 42 0.43
dbj|AG021086.1| Oryza sativa (japonica cultivar-group) DNA,... 42 0.43
dbj|AG024570.1| Oryza sativa (japonica cultivar-group) DNA,... 42 0.43
dbj|AB157529.1| Oryza sativa (japonica cultivar-group) DNA,... 42 0.43
gb|CF452785.1|CF452785 EST00001 Subtracted cDNA library of ... 42 0.43
gb|AC118980.2| Oryza sativa (japonica cultivar-group) chrom... 42 0.43
gb|AACV01005773.1| Oryza sativa (japonica cultivar-group) c... 42 0.43
>gb|AY324384.1| Oryza sativa (japonica cultivar-group) callose synthase-like protein
mRNA, partial cds
Length = 2727
Score = 521 bits (263), Expect = e-145
Identities = 512/596 (85%), Gaps = 3/596 (0%)
Strand = Plus / Minus
Query: 30 gtaacattgccttcacgcaatgtggaattgaatcctgcaaatatgtcctcactgagattg 89
|||||||| |||||||||| ||| || |||||||| ||||||||||||||||| ||||||
Sbjct: 1247 gtaacatttccttcacgcagtgttgagttgaatccagcaaatatgtcctcactaagattg 1188
Query: 90 ataattttggatgctttactcacaccacccctcgtaatgtggaaaaggcgatcgaagata 149
||||| ||||||||||| || |||||||||||||| | ||||||||| ||||| || |||
Sbjct: 1187 ataatcttggatgctttgcttacaccacccctcgtgaggtggaaaagtcgatcaaaaata 1128
Query: 150 tcaggatgaccataatgaaaacgaaccctcaacggattggcaagcactcgttgtccaatt 209
|||||||| ||||||||||| ||||| ||||| ||||||||||| || |||||||||||
Sbjct: 1127 tcaggatgtccataatgaaatcgaactctcaaaggattggcaagtacccgttgtccaata 1068
Query: 210 gttacgaaactagtttcctgatttgacatgaaccatgcaagggatgacacactgcccgta 269
|| || ||||| || || ||||||||||||||||| ||||| || || |||||||| ||
Sbjct: 1067 gtgacaaaacttgtctcttgatttgacatgaaccacgcaagagaagaaacactgccagtg 1008
Query: 270 aatatgtgttctctgactccaagcatcgatggatatctcactccat---gtttcttctca 326
|||||||| ||||| || ||||| || |||||||| ||||| |||| |||||||| |
Sbjct: 1007 aatatgtgctctctcacaccaagtattgatggatacctcacaccatcatgtttcttcaga 948
Query: 327 aactcttgcagcagatttctcattttcaaagcctcctccatatagtgctcctgattcata 386
||||||||||||||||||||||||||||||| ||||||||| || || |||||||||||
Sbjct: 947 aactcttgcagcagatttctcattttcaaagtctcctccatgtaatgttcctgattcatg 888
Query: 387 tctatagtttggaggcattcgcctctggtgaatattattgcatggttctgattttctggc 446
||||||||||| |||| ||| |||| || |||||||| |||||||||||||||||||||
Sbjct: 887 tctatagtttgaaggccttcacctcgagtaaatattatcgcatggttctgattttctggc 828
Query: 447 tttccttcacctaaaatggcattacctggtagctttatcttgtagatgacctgatcaagg 506
||||||||||||| || |||||||||||||||||||| |||| ||| ||||||||||
Sbjct: 827 tttccttcacctagcattgcattacctggtagctttattctgtatatgtcctgatcaagt 768
Query: 507 ctctgaccaggctcatcaggttttgtaacagaagccttcaccaacactgagtagtaaacc 566
|||||||||| || ||||| || || |||| |||||||||||| ||||||||||||||
Sbjct: 767 ttctgaccaggatcgtcaggcttggttacagctgccttcaccaacgctgagtagtaaacc 708
Query: 567 ttttcaatcttcttnnntctatcttgnctaggcgcntcaacttcatcaatataggc 622
||||| |||||||| || |||| || ||| | ||||||||||||||||||||
Sbjct: 707 ttttctatcttcttgttcctgtctttgcttggctcttcaacttcatcaatataggc 652
>ref|XM_468556.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 5910
Score = 521 bits (263), Expect = e-145
Identities = 512/596 (85%), Gaps = 3/596 (0%)
Strand = Plus / Minus
Query: 30 gtaacattgccttcacgcaatgtggaattgaatcctgcaaatatgtcctcactgagattg 89
|||||||| |||||||||| ||| || |||||||| ||||||||||||||||| ||||||
Sbjct: 4430 gtaacatttccttcacgcagtgttgagttgaatccagcaaatatgtcctcactaagattg 4371
Query: 90 ataattttggatgctttactcacaccacccctcgtaatgtggaaaaggcgatcgaagata 149
||||| ||||||||||| || |||||||||||||| | ||||||||| ||||| || |||
Sbjct: 4370 ataatcttggatgctttgcttacaccacccctcgtgaggtggaaaagtcgatcaaaaata 4311
Query: 150 tcaggatgaccataatgaaaacgaaccctcaacggattggcaagcactcgttgtccaatt 209
|||||||| ||||||||||| ||||| ||||| ||||||||||| || |||||||||||
Sbjct: 4310 tcaggatgtccataatgaaatcgaactctcaaaggattggcaagtacccgttgtccaata 4251
Query: 210 gttacgaaactagtttcctgatttgacatgaaccatgcaagggatgacacactgcccgta 269
|| || ||||| || || ||||||||||||||||| ||||| || || |||||||| ||
Sbjct: 4250 gtgacaaaacttgtctcttgatttgacatgaaccacgcaagagaagaaacactgccagtg 4191
Query: 270 aatatgtgttctctgactccaagcatcgatggatatctcactccat---gtttcttctca 326
|||||||| ||||| || ||||| || |||||||| ||||| |||| |||||||| |
Sbjct: 4190 aatatgtgctctctcacaccaagtattgatggatacctcacaccatcatgtttcttcaga 4131
Query: 327 aactcttgcagcagatttctcattttcaaagcctcctccatatagtgctcctgattcata 386
||||||||||||||||||||||||||||||| ||||||||| || || |||||||||||
Sbjct: 4130 aactcttgcagcagatttctcattttcaaagtctcctccatgtaatgttcctgattcatg 4071
Query: 387 tctatagtttggaggcattcgcctctggtgaatattattgcatggttctgattttctggc 446
||||||||||| |||| ||| |||| || |||||||| |||||||||||||||||||||
Sbjct: 4070 tctatagtttgaaggccttcacctcgagtaaatattatcgcatggttctgattttctggc 4011
Query: 447 tttccttcacctaaaatggcattacctggtagctttatcttgtagatgacctgatcaagg 506
||||||||||||| || |||||||||||||||||||| |||| ||| ||||||||||
Sbjct: 4010 tttccttcacctagcattgcattacctggtagctttattctgtatatgtcctgatcaagt 3951
Query: 507 ctctgaccaggctcatcaggttttgtaacagaagccttcaccaacactgagtagtaaacc 566
|||||||||| || ||||| || || |||| |||||||||||| ||||||||||||||
Sbjct: 3950 ttctgaccaggatcgtcaggcttggttacagctgccttcaccaacgctgagtagtaaacc 3891
Query: 567 ttttcaatcttcttnnntctatcttgnctaggcgcntcaacttcatcaatataggc 622
||||| |||||||| || |||| || ||| | ||||||||||||||||||||
Sbjct: 3890 ttttctatcttcttgttcctgtctttgcttggctcttcaacttcatcaatataggc 3835
>gb|CB675632.1|CB675632 OSJNEe11H21.r OSJNEe Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEe11H21 3', mRNA sequence
Length = 914
Score = 188 bits (95), Expect = 3e-045
Identities = 177/206 (85%)
Strand = Plus / Plus
Query: 417 aatattattgcatggttctgattttctggctttccttcacctaaaatggcattacctggt 476
|||||||| |||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct: 34 aatattatcgcatggttctgattttctggctttccttcacctagcattgcattacctggt 93
Query: 477 agctttatcttgtagatgacctgatcaaggctctgaccaggctcatcaggttttgtaaca 536
|||||||| |||| ||| |||||||||| |||||||||| || ||||| || || |||
Sbjct: 94 agctttattctgtatatgtcctgatcaagtttctgaccaggatcgtcaggcttggttaca 153
Query: 537 gaagccttcaccaacactgagtagtaaaccttttcaatcttcttnnntctatcttgncta 596
| |||||||||||| ||||||||||||||||||| |||||||| || |||| ||
Sbjct: 154 gctgccttcaccaacgctgagtagtaaaccttttctatcttcttgttcctgtctttgctt 213
Query: 597 ggcgcntcaacttcatcaatataggc 622
||| | ||||||||||||||||||||
Sbjct: 214 ggctcttcaacttcatcaatataggc 239
>gb|AZ047463.1|AZ047463 nbeb0094M21f CUGI Rice BAC Library (EcoRI) Oryza sativa (japonica
cultivar-group) genomic clone OSJNBb0094M21f, DNA
sequence
Length = 430
Score = 141 bits (71), Expect = 6e-031
Identities = 110/123 (89%)
Strand = Plus / Minus
Query: 376 cctgattcatatctatagtttggaggcattcgcctctggtgaatattattgcatggttct 435
||||||||||||||||||||||||||||||| || | || || || |||||||| ||||
Sbjct: 196 cctgattcatatctatagtttggaggcattcaccacgagtaaaaataattgcatgattct 137
Query: 436 gattttctggctttccttcacctaaaatggcattacctggtagctttatcttgtagatga 495
|||||||||| ||||||||||||||||| ||||||||||| || ||||||||||| ||||
Sbjct: 136 gattttctggttttccttcacctaaaatagcattacctggaagttttatcttgtatatga 77
Query: 496 cct 498
|||
Sbjct: 76 cct 74
Score = 119 bits (60), Expect = 2e-024
Identities = 107/122 (87%), Gaps = 3/122 (2%)
Strand = Plus / Minus
Query: 261 ctgcccgtaaatatgtgttctctgactccaagcatcgatggatatctcactccat---gt 317
||||| |||||||| || ||||| |||||||| || |||||||||||||| |||| ||
Sbjct: 396 ctgccagtaaatatatgctctcttactccaagtattgatggatatctcacaccatcatgt 337
Query: 318 ttcttctcaaactcttgcagcagatttctcattttcaaagcctcctccatatagtgctcc 377
|||||| |||||| | |||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 336 ttcttcagaaactcatccagcagatttctcattttcaaagcctcctccatataatgctcc 277
Query: 378 tg 379
||
Sbjct: 276 tg 275
>ref|NT_107235.1| Oryza sativa (japonica cultivar-group)
Length = 369247
Score = 141 bits (71), Expect = 6e-031
Identities = 110/123 (89%)
Strand = Plus / Plus
Query: 376 cctgattcatatctatagtttggaggcattcgcctctggtgaatattattgcatggttct 435
||||||||||||||||||||||||||||||| || | || || || |||||||| ||||
Sbjct: 158544 cctgattcatatctatagtttggaggcattcaccacgagtaaaaataattgcatgattct 158603
Query: 436 gattttctggctttccttcacctaaaatggcattacctggtagctttatcttgtagatga 495
|||||||||| ||||||||||||||||| ||||||||||| || ||||||||||| ||||
Sbjct: 158604 gattttctggttttccttcacctaaaatagcattacctggaagttttatcttgtatatga 158663
Query: 496 cct 498
|||
Sbjct: 158664 cct 158666
Score = 121 bits (61), Expect = 6e-025
Identities = 100/113 (88%)
Strand = Plus / Plus
Query: 66 gcaaatatgtcctcactgagattgataattttggatgctttactcacaccacccctcgta 125
|||||||| || ||||| |||||||||||||||||||||||||| ||||||||||| ||
Sbjct: 157209 gcaaatatatcttcactaagattgataattttggatgctttacttacaccaccccttgtg 157268
Query: 126 atgtggaaaaggcgatcgaagatatcaggatgaccataatgaaaacgaaccct 178
| ||||||||| ||||| |||||||||||||| ||||| || || ||||||||
Sbjct: 157269 aggtggaaaagacgatcaaagatatcaggatggccatagtggaatcgaaccct 157321
Score = 119 bits (60), Expect = 2e-024
Identities = 107/122 (87%), Gaps = 3/122 (2%)
Strand = Plus / Plus
Query: 261 ctgcccgtaaatatgtgttctctgactccaagcatcgatggatatctcactccat---gt 317
||||| |||||||| || ||||| |||||||| || |||||||||||||| |||| ||
Sbjct: 158344 ctgccagtaaatatatgctctcttactccaagtattgatggatatctcacaccatcatgt 158403
Query: 318 ttcttctcaaactcttgcagcagatttctcattttcaaagcctcctccatatagtgctcc 377
|||||| |||||| | |||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 158404 ttcttcagaaactcatccagcagatttctcattttcaaagcctcctccatataatgctcc 158463
Query: 378 tg 379
||
Sbjct: 158464 tg 158465
Score = 99.6 bits (50), Expect = 2e-018
Identities = 105/125 (84%)
Strand = Plus / Plus
Query: 495 acctgatcaaggctctgaccaggctcatcaggttttgtaacagaagccttcaccaacact 554
||||||||||| || || || || |||| |||||||||||| ||||| |||||||| ||
Sbjct: 159570 acctgatcaagactttgtcctggttcattaggttttgtaacggaagctttcaccaatgct 159629
Query: 555 gagtagtaaaccttttcaatcttcttnnntctatcttgnctaggcgcntcaacttcatca 614
||||||||||| || ||| ||||||| ||||||||| ||||| || ||||| ||||||
Sbjct: 159630 gagtagtaaactttgtcagtcttcttgtttctatcttggctaggtgcttcaacctcatca 159689
Query: 615 atata 619
|||||
Sbjct: 159690 atata 159694
Score = 93.7 bits (47), Expect = 1e-016
Identities = 71/79 (89%)
Strand = Plus / Plus
Query: 186 ttggcaagcactcgttgtccaattgttacgaaactagtttcctgatttgacatgaaccat 245
||||||||||| || |||||||| || || ||||| || |||||||||||||||||||||
Sbjct: 158166 ttggcaagcacacgctgtccaatagtcacaaaactggtctcctgatttgacatgaaccat 158225
Query: 246 gcaagggatgacacactgc 264
||||||||||| |||||||
Sbjct: 158226 gcaagggatgaaacactgc 158244
Score = 63.9 bits (32), Expect = 1e-007
Identities = 47/52 (90%)
Strand = Plus / Plus
Query: 17 gtactcgtggtgagtaacattgccttcacgcaatgtggaattgaatcctgca 68
|||||| || ||||| |||||||||||||||||||| |||||||| ||||||
Sbjct: 157080 gtactcatgatgagtgacattgccttcacgcaatgttgaattgaaacctgca 157131
>dbj|AP004685.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
clone:P0017G10
Length = 166700
Score = 141 bits (71), Expect = 6e-031
Identities = 110/123 (89%)
Strand = Plus / Plus
Query: 376 cctgattcatatctatagtttggaggcattcgcctctggtgaatattattgcatggttct 435
||||||||||||||||||||||||||||||| || | || || || |||||||| ||||
Sbjct: 158544 cctgattcatatctatagtttggaggcattcaccacgagtaaaaataattgcatgattct 158603
Query: 436 gattttctggctttccttcacctaaaatggcattacctggtagctttatcttgtagatga 495
|||||||||| ||||||||||||||||| ||||||||||| || ||||||||||| ||||
Sbjct: 158604 gattttctggttttccttcacctaaaatagcattacctggaagttttatcttgtatatga 158663
Query: 496 cct 498
|||
Sbjct: 158664 cct 158666
Score = 121 bits (61), Expect = 6e-025
Identities = 100/113 (88%)
Strand = Plus / Plus
Query: 66 gcaaatatgtcctcactgagattgataattttggatgctttactcacaccacccctcgta 125
|||||||| || ||||| |||||||||||||||||||||||||| ||||||||||| ||
Sbjct: 157209 gcaaatatatcttcactaagattgataattttggatgctttacttacaccaccccttgtg 157268
Query: 126 atgtggaaaaggcgatcgaagatatcaggatgaccataatgaaaacgaaccct 178
| ||||||||| ||||| |||||||||||||| ||||| || || ||||||||
Sbjct: 157269 aggtggaaaagacgatcaaagatatcaggatggccatagtggaatcgaaccct 157321
Score = 119 bits (60), Expect = 2e-024
Identities = 107/122 (87%), Gaps = 3/122 (2%)
Strand = Plus / Plus
Query: 261 ctgcccgtaaatatgtgttctctgactccaagcatcgatggatatctcactccat---gt 317
||||| |||||||| || ||||| |||||||| || |||||||||||||| |||| ||
Sbjct: 158344 ctgccagtaaatatatgctctcttactccaagtattgatggatatctcacaccatcatgt 158403
Query: 318 ttcttctcaaactcttgcagcagatttctcattttcaaagcctcctccatatagtgctcc 377
|||||| |||||| | |||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 158404 ttcttcagaaactcatccagcagatttctcattttcaaagcctcctccatataatgctcc 158463
Query: 378 tg 379
||
Sbjct: 158464 tg 158465
Score = 99.6 bits (50), Expect = 2e-018
Identities = 105/125 (84%)
Strand = Plus / Plus
Query: 495 acctgatcaaggctctgaccaggctcatcaggttttgtaacagaagccttcaccaacact 554
||||||||||| || || || || |||| |||||||||||| ||||| |||||||| ||
Sbjct: 159570 acctgatcaagactttgtcctggttcattaggttttgtaacggaagctttcaccaatgct 159629
Query: 555 gagtagtaaaccttttcaatcttcttnnntctatcttgnctaggcgcntcaacttcatca 614
||||||||||| || ||| ||||||| ||||||||| ||||| || ||||| ||||||
Sbjct: 159630 gagtagtaaactttgtcagtcttcttgtttctatcttggctaggtgcttcaacctcatca 159689
Query: 615 atata 619
|||||
Sbjct: 159690 atata 159694
Score = 93.7 bits (47), Expect = 1e-016
Identities = 71/79 (89%)
Strand = Plus / Plus
Query: 186 ttggcaagcactcgttgtccaattgttacgaaactagtttcctgatttgacatgaaccat 245
||||||||||| || |||||||| || || ||||| || |||||||||||||||||||||
Sbjct: 158166 ttggcaagcacacgctgtccaatagtcacaaaactggtctcctgatttgacatgaaccat 158225
Query: 246 gcaagggatgacacactgc 264
||||||||||| |||||||
Sbjct: 158226 gcaagggatgaaacactgc 158244
Score = 63.9 bits (32), Expect = 1e-007
Identities = 47/52 (90%)
Strand = Plus / Plus
Query: 17 gtactcgtggtgagtaacattgccttcacgcaatgtggaattgaatcctgca 68
|||||| || ||||| |||||||||||||||||||| |||||||| ||||||
Sbjct: 157080 gtactcatgatgagtgacattgccttcacgcaatgttgaattgaaacctgca 157131
>dbj|AP005750.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
clone:OSJNBa0069C14
Length = 150579
Score = 141 bits (71), Expect = 6e-031
Identities = 110/123 (89%)
Strand = Plus / Plus
Query: 376 cctgattcatatctatagtttggaggcattcgcctctggtgaatattattgcatggttct 435
||||||||||||||||||||||||||||||| || | || || || |||||||| ||||
Sbjct: 19746 cctgattcatatctatagtttggaggcattcaccacgagtaaaaataattgcatgattct 19805
Query: 436 gattttctggctttccttcacctaaaatggcattacctggtagctttatcttgtagatga 495
|||||||||| ||||||||||||||||| ||||||||||| || ||||||||||| ||||
Sbjct: 19806 gattttctggttttccttcacctaaaatagcattacctggaagttttatcttgtatatga 19865
Query: 496 cct 498
|||
Sbjct: 19866 cct 19868
Score = 121 bits (61), Expect = 6e-025
Identities = 100/113 (88%)
Strand = Plus / Plus
Query: 66 gcaaatatgtcctcactgagattgataattttggatgctttactcacaccacccctcgta 125
|||||||| || ||||| |||||||||||||||||||||||||| ||||||||||| ||
Sbjct: 18411 gcaaatatatcttcactaagattgataattttggatgctttacttacaccaccccttgtg 18470
Query: 126 atgtggaaaaggcgatcgaagatatcaggatgaccataatgaaaacgaaccct 178
| ||||||||| ||||| |||||||||||||| ||||| || || ||||||||
Sbjct: 18471 aggtggaaaagacgatcaaagatatcaggatggccatagtggaatcgaaccct 18523
Score = 119 bits (60), Expect = 2e-024
Identities = 107/122 (87%), Gaps = 3/122 (2%)
Strand = Plus / Plus
Query: 261 ctgcccgtaaatatgtgttctctgactccaagcatcgatggatatctcactccat---gt 317
||||| |||||||| || ||||| |||||||| || |||||||||||||| |||| ||
Sbjct: 19546 ctgccagtaaatatatgctctcttactccaagtattgatggatatctcacaccatcatgt 19605
Query: 318 ttcttctcaaactcttgcagcagatttctcattttcaaagcctcctccatatagtgctcc 377
|||||| |||||| | |||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 19606 ttcttcagaaactcatccagcagatttctcattttcaaagcctcctccatataatgctcc 19665
Query: 378 tg 379
||
Sbjct: 19666 tg 19667
Score = 99.6 bits (50), Expect = 2e-018
Identities = 105/125 (84%)
Strand = Plus / Plus
Query: 495 acctgatcaaggctctgaccaggctcatcaggttttgtaacagaagccttcaccaacact 554
||||||||||| || || || || |||| |||||||||||| ||||| |||||||| ||
Sbjct: 20772 acctgatcaagactttgtcctggttcattaggttttgtaacggaagctttcaccaatgct 20831
Query: 555 gagtagtaaaccttttcaatcttcttnnntctatcttgnctaggcgcntcaacttcatca 614
||||||||||| || ||| ||||||| ||||||||| ||||| || ||||| ||||||
Sbjct: 20832 gagtagtaaactttgtcagtcttcttgtttctatcttggctaggtgcttcaacctcatca 20891
Query: 615 atata 619
|||||
Sbjct: 20892 atata 20896
Score = 93.7 bits (47), Expect = 1e-016
Identities = 71/79 (89%)
Strand = Plus / Plus
Query: 186 ttggcaagcactcgttgtccaattgttacgaaactagtttcctgatttgacatgaaccat 245
||||||||||| || |||||||| || || ||||| || |||||||||||||||||||||
Sbjct: 19368 ttggcaagcacacgctgtccaatagtcacaaaactggtctcctgatttgacatgaaccat 19427
Query: 246 gcaagggatgacacactgc 264
||||||||||| |||||||
Sbjct: 19428 gcaagggatgaaacactgc 19446
Score = 63.9 bits (32), Expect = 1e-007
Identities = 47/52 (90%)
Strand = Plus / Plus
Query: 17 gtactcgtggtgagtaacattgccttcacgcaatgtggaattgaatcctgca 68
|||||| || ||||| |||||||||||||||||||| |||||||| ||||||
Sbjct: 18282 gtactcatgatgagtgacattgccttcacgcaatgttgaattgaaacctgca 18333
>gb|AACV01014975.1| Oryza sativa (japonica cultivar-group) chromosome 6 Ctg014975, whole
genome shotgun sequence
Length = 9397
Score = 141 bits (71), Expect = 6e-031
Identities = 110/123 (89%)
Strand = Plus / Minus
Query: 376 cctgattcatatctatagtttggaggcattcgcctctggtgaatattattgcatggttct 435
||||||||||||||||||||||||||||||| || | || || || |||||||| ||||
Sbjct: 1973 cctgattcatatctatagtttggaggcattcaccacgagtaaaaataattgcatgattct 1914
Query: 436 gattttctggctttccttcacctaaaatggcattacctggtagctttatcttgtagatga 495
|||||||||| ||||||||||||||||| ||||||||||| || ||||||||||| ||||
Sbjct: 1913 gattttctggttttccttcacctaaaatagcattacctggaagttttatcttgtatatga 1854
Query: 496 cct 498
|||
Sbjct: 1853 cct 1851
Score = 121 bits (61), Expect = 6e-025
Identities = 100/113 (88%)
Strand = Plus / Minus
Query: 66 gcaaatatgtcctcactgagattgataattttggatgctttactcacaccacccctcgta 125
|||||||| || ||||| |||||||||||||||||||||||||| ||||||||||| ||
Sbjct: 3308 gcaaatatatcttcactaagattgataattttggatgctttacttacaccaccccttgtg 3249
Query: 126 atgtggaaaaggcgatcgaagatatcaggatgaccataatgaaaacgaaccct 178
| ||||||||| ||||| |||||||||||||| ||||| || || ||||||||
Sbjct: 3248 aggtggaaaagacgatcaaagatatcaggatggccatagtggaatcgaaccct 3196
Score = 119 bits (60), Expect = 2e-024
Identities = 107/122 (87%), Gaps = 3/122 (2%)
Strand = Plus / Minus
Query: 261 ctgcccgtaaatatgtgttctctgactccaagcatcgatggatatctcactccat---gt 317
||||| |||||||| || ||||| |||||||| || |||||||||||||| |||| ||
Sbjct: 2173 ctgccagtaaatatatgctctcttactccaagtattgatggatatctcacaccatcatgt 2114
Query: 318 ttcttctcaaactcttgcagcagatttctcattttcaaagcctcctccatatagtgctcc 377
|||||| |||||| | |||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 2113 ttcttcagaaactcatccagcagatttctcattttcaaagcctcctccatataatgctcc 2054
Query: 378 tg 379
||
Sbjct: 2053 tg 2052
Score = 99.6 bits (50), Expect = 2e-018
Identities = 105/125 (84%)
Strand = Plus / Minus
Query: 495 acctgatcaaggctctgaccaggctcatcaggttttgtaacagaagccttcaccaacact 554
||||||||||| || || || || |||| |||||||||||| ||||| |||||||| ||
Sbjct: 947 acctgatcaagactttgtcctggttcattaggttttgtaacggaagctttcaccaatgct 888
Query: 555 gagtagtaaaccttttcaatcttcttnnntctatcttgnctaggcgcntcaacttcatca 614
||||||||||| || ||| ||||||| ||||||||| ||||| || ||||| ||||||
Sbjct: 887 gagtagtaaactttgtcagtcttcttgtttctatcttggctaggtgcttcaacctcatca 828
Query: 615 atata 619
|||||
Sbjct: 827 atata 823
Score = 93.7 bits (47), Expect = 1e-016
Identities = 71/79 (89%)
Strand = Plus / Minus
Query: 186 ttggcaagcactcgttgtccaattgttacgaaactagtttcctgatttgacatgaaccat 245
||||||||||| || |||||||| || || ||||| || |||||||||||||||||||||
Sbjct: 2351 ttggcaagcacacgctgtccaatagtcacaaaactggtctcctgatttgacatgaaccat 2292
Query: 246 gcaagggatgacacactgc 264
||||||||||| |||||||
Sbjct: 2291 gcaagggatgaaacactgc 2273
Score = 63.9 bits (32), Expect = 1e-007
Identities = 47/52 (90%)
Strand = Plus / Minus
Query: 17 gtactcgtggtgagtaacattgccttcacgcaatgtggaattgaatcctgca 68
|||||| || ||||| |||||||||||||||||||| |||||||| ||||||
Sbjct: 3437 gtactcatgatgagtgacattgccttcacgcaatgttgaattgaaacctgca 3386
>gb|CH401216.1| Oryza sativa (japonica cultivar-group) chromosome 6 scaffold000053 genomic
scaffold, whole genome shotgun sequence
Length = 12033173
Score = 141 bits (71), Expect = 6e-031
Identities = 110/123 (89%)
Strand = Plus / Plus
Query: 376 cctgattcatatctatagtttggaggcattcgcctctggtgaatattattgcatggttct 435
||||||||||||||||||||||||||||||| || | || || || |||||||| ||||
Sbjct: 11853202 cctgattcatatctatagtttggaggcattcaccacgagtaaaaataattgcatgattct 11853261
Query: 436 gattttctggctttccttcacctaaaatggcattacctggtagctttatcttgtagatga 495
|||||||||| ||||||||||||||||| ||||||||||| || ||||||||||| ||||
Sbjct: 11853262 gattttctggttttccttcacctaaaatagcattacctggaagttttatcttgtatatga 11853321
Query: 496 cct 498
|||
Sbjct: 11853322 cct 11853324
Score = 121 bits (61), Expect = 6e-025
Identities = 100/113 (88%)
Strand = Plus / Plus
Query: 66 gcaaatatgtcctcactgagattgataattttggatgctttactcacaccacccctcgta 125
|||||||| || ||||| |||||||||||||||||||||||||| ||||||||||| ||
Sbjct: 11851867 gcaaatatatcttcactaagattgataattttggatgctttacttacaccaccccttgtg 11851926
Query: 126 atgtggaaaaggcgatcgaagatatcaggatgaccataatgaaaacgaaccct 178
| ||||||||| ||||| |||||||||||||| ||||| || || ||||||||
Sbjct: 11851927 aggtggaaaagacgatcaaagatatcaggatggccatagtggaatcgaaccct 11851979
Score = 119 bits (60), Expect = 2e-024
Identities = 107/122 (87%), Gaps = 3/122 (2%)
Strand = Plus / Plus
Query: 261 ctgcccgtaaatatgtgttctctgactccaagcatcgatggatatctcactccat---gt 317
||||| |||||||| || ||||| |||||||| || |||||||||||||| |||| ||
Sbjct: 11853002 ctgccagtaaatatatgctctcttactccaagtattgatggatatctcacaccatcatgt 11853061
Query: 318 ttcttctcaaactcttgcagcagatttctcattttcaaagcctcctccatatagtgctcc 377
|||||| |||||| | |||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 11853062 ttcttcagaaactcatccagcagatttctcattttcaaagcctcctccatataatgctcc 11853121
Query: 378 tg 379
||
Sbjct: 11853122 tg 11853123
Score = 99.6 bits (50), Expect = 2e-018
Identities = 105/125 (84%)
Strand = Plus / Plus
Query: 495 acctgatcaaggctctgaccaggctcatcaggttttgtaacagaagccttcaccaacact 554
||||||||||| || || || || |||| |||||||||||| ||||| |||||||| ||
Sbjct: 11855401 acctgatcaagactttgtcctggttcattaggttttgtaacggaagctttcaccaatgct 11855460
Query: 555 gagtagtaaaccttttcaatcttcttnnntctatcttgnctaggcgcntcaacttcatca 614
||||||||||| || ||| ||||||| ||||||||| ||||| || ||||| ||||||
Sbjct: 11855461 gagtagtaaactttgtcagtcttcttgtttctatcttggctaggtgcttcaacctcatca 11855520
Query: 615 atata 619
|||||
Sbjct: 11855521 atata 11855525
Score = 99.6 bits (50), Expect = 2e-018
Identities = 105/125 (84%)
Strand = Plus / Plus
Query: 495 acctgatcaaggctctgaccaggctcatcaggttttgtaacagaagccttcaccaacact 554
||||||||||| || || || || |||| |||||||||||| ||||| |||||||| ||
Sbjct: 11854228 acctgatcaagactttgtcctggttcattaggttttgtaacggaagctttcaccaatgct 11854287
Query: 555 gagtagtaaaccttttcaatcttcttnnntctatcttgnctaggcgcntcaacttcatca 614
||||||||||| || ||| ||||||| ||||||||| ||||| || ||||| ||||||
Sbjct: 11854288 gagtagtaaactttgtcagtcttcttgtttctatcttggctaggtgcttcaacctcatca 11854347
Query: 615 atata 619
|||||
Sbjct: 11854348 atata 11854352
Score = 93.7 bits (47), Expect = 1e-016
Identities = 71/79 (89%)
Strand = Plus / Plus
Query: 186 ttggcaagcactcgttgtccaattgttacgaaactagtttcctgatttgacatgaaccat 245
||||||||||| || |||||||| || || ||||| || |||||||||||||||||||||
Sbjct: 11852824 ttggcaagcacacgctgtccaatagtcacaaaactggtctcctgatttgacatgaaccat 11852883
Query: 246 gcaagggatgacacactgc 264
||||||||||| |||||||
Sbjct: 11852884 gcaagggatgaaacactgc 11852902
Score = 63.9 bits (32), Expect = 1e-007
Identities = 47/52 (90%)
Strand = Plus / Plus
Query: 17 gtactcgtggtgagtaacattgccttcacgcaatgtggaattgaatcctgca 68
|||||| || ||||| |||||||||||||||||||| |||||||| ||||||
Sbjct: 11851738 gtactcatgatgagtgacattgccttcacgcaatgttgaattgaaacctgca 11851789
>gb|CM000143.1| Oryza sativa (japonica cultivar-group) chromosome 6, whole genome shotgun
sequence
Length = 29740507
Score = 141 bits (71), Expect = 6e-031
Identities = 110/123 (89%)
Strand = Plus / Plus
Query: 376 cctgattcatatctatagtttggaggcattcgcctctggtgaatattattgcatggttct 435
||||||||||||||||||||||||||||||| || | || || || |||||||| ||||
Sbjct: 29551939 cctgattcatatctatagtttggaggcattcaccacgagtaaaaataattgcatgattct 29551998
Query: 436 gattttctggctttccttcacctaaaatggcattacctggtagctttatcttgtagatga 495
|||||||||| ||||||||||||||||| ||||||||||| || ||||||||||| ||||
Sbjct: 29551999 gattttctggttttccttcacctaaaatagcattacctggaagttttatcttgtatatga 29552058
Query: 496 cct 498
|||
Sbjct: 29552059 cct 29552061
Score = 121 bits (61), Expect = 6e-025
Identities = 100/113 (88%)
Strand = Plus / Plus
Query: 66 gcaaatatgtcctcactgagattgataattttggatgctttactcacaccacccctcgta 125
|||||||| || ||||| |||||||||||||||||||||||||| ||||||||||| ||
Sbjct: 29550604 gcaaatatatcttcactaagattgataattttggatgctttacttacaccaccccttgtg 29550663
Query: 126 atgtggaaaaggcgatcgaagatatcaggatgaccataatgaaaacgaaccct 178
| ||||||||| ||||| |||||||||||||| ||||| || || ||||||||
Sbjct: 29550664 aggtggaaaagacgatcaaagatatcaggatggccatagtggaatcgaaccct 29550716
Score = 119 bits (60), Expect = 2e-024
Identities = 107/122 (87%), Gaps = 3/122 (2%)
Strand = Plus / Plus
Query: 261 ctgcccgtaaatatgtgttctctgactccaagcatcgatggatatctcactccat---gt 317
||||| |||||||| || ||||| |||||||| || |||||||||||||| |||| ||
Sbjct: 29551739 ctgccagtaaatatatgctctcttactccaagtattgatggatatctcacaccatcatgt 29551798
Query: 318 ttcttctcaaactcttgcagcagatttctcattttcaaagcctcctccatatagtgctcc 377
|||||| |||||| | |||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 29551799 ttcttcagaaactcatccagcagatttctcattttcaaagcctcctccatataatgctcc 29551858
Query: 378 tg 379
||
Sbjct: 29551859 tg 29551860
Score = 99.6 bits (50), Expect = 2e-018
Identities = 105/125 (84%)
Strand = Plus / Plus
Query: 495 acctgatcaaggctctgaccaggctcatcaggttttgtaacagaagccttcaccaacact 554
||||||||||| || || || || |||| |||||||||||| ||||| |||||||| ||
Sbjct: 29554138 acctgatcaagactttgtcctggttcattaggttttgtaacggaagctttcaccaatgct 29554197
Query: 555 gagtagtaaaccttttcaatcttcttnnntctatcttgnctaggcgcntcaacttcatca 614
||||||||||| || ||| ||||||| ||||||||| ||||| || ||||| ||||||
Sbjct: 29554198 gagtagtaaactttgtcagtcttcttgtttctatcttggctaggtgcttcaacctcatca 29554257
Query: 615 atata 619
|||||
Sbjct: 29554258 atata 29554262
Score = 99.6 bits (50), Expect = 2e-018
Identities = 105/125 (84%)
Strand = Plus / Plus
Query: 495 acctgatcaaggctctgaccaggctcatcaggttttgtaacagaagccttcaccaacact 554
||||||||||| || || || || |||| |||||||||||| ||||| |||||||| ||
Sbjct: 29552965 acctgatcaagactttgtcctggttcattaggttttgtaacggaagctttcaccaatgct 29553024
Query: 555 gagtagtaaaccttttcaatcttcttnnntctatcttgnctaggcgcntcaacttcatca 614
||||||||||| || ||| ||||||| ||||||||| ||||| || ||||| ||||||
Sbjct: 29553025 gagtagtaaactttgtcagtcttcttgtttctatcttggctaggtgcttcaacctcatca 29553084
Query: 615 atata 619
|||||
Sbjct: 29553085 atata 29553089
Score = 93.7 bits (47), Expect = 1e-016
Identities = 71/79 (89%)
Strand = Plus / Plus
Query: 186 ttggcaagcactcgttgtccaattgttacgaaactagtttcctgatttgacatgaaccat 245
||||||||||| || |||||||| || || ||||| || |||||||||||||||||||||
Sbjct: 29551561 ttggcaagcacacgctgtccaatagtcacaaaactggtctcctgatttgacatgaaccat 29551620
Query: 246 gcaagggatgacacactgc 264
||||||||||| |||||||
Sbjct: 29551621 gcaagggatgaaacactgc 29551639
Score = 63.9 bits (32), Expect = 1e-007
Identities = 47/52 (90%)
Strand = Plus / Plus
Query: 17 gtactcgtggtgagtaacattgccttcacgcaatgtggaattgaatcctgca 68
|||||| || ||||| |||||||||||||||||||| |||||||| ||||||
Sbjct: 29550475 gtactcatgatgagtgacattgccttcacgcaatgttgaattgaaacctgca 29550526
Score = 44.1 bits (22), Expect = 0.11
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 423 attgcatggttctgattttctggctttccttcacctaa 460
|||||||| ||||| |||||||| || |||||||||||
Sbjct: 3914806 attgcatgattctggttttctggtttaccttcacctaa 3914843
Score = 44.1 bits (22), Expect = 0.11
Identities = 52/62 (83%)
Strand = Plus / Plus
Query: 201 tgtccaattgttacgaaactagtttcctgatttgacatgaaccatgcaagggatgacaca 260
||||||||||| || || || |||||||| |||||||| ||||| || || || ||||||
Sbjct: 3914409 tgtccaattgtcacaaagcttgtttcctggtttgacataaaccacgcgagagaggacaca 3914468
Query: 261 ct 262
||
Sbjct: 3914469 ct 3914470
Score = 44.1 bits (22), Expect = 0.11
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 414 gtgaatattattgcatggttctgattttctggctttcc 451
|||||||| || ||||||||||||||||| || |||||
Sbjct: 623219 gtgaatataatagcatggttctgattttcaggttttcc 623256
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
sequence
Length = 30731886
Score = 141 bits (71), Expect = 6e-031
Identities = 110/123 (89%)
Strand = Plus / Plus
Query: 376 cctgattcatatctatagtttggaggcattcgcctctggtgaatattattgcatggttct 435
||||||||||||||||||||||||||||||| || | || || || |||||||| ||||
Sbjct: 30521183 cctgattcatatctatagtttggaggcattcaccacgagtaaaaataattgcatgattct 30521242
Query: 436 gattttctggctttccttcacctaaaatggcattacctggtagctttatcttgtagatga 495
|||||||||| ||||||||||||||||| ||||||||||| || ||||||||||| ||||
Sbjct: 30521243 gattttctggttttccttcacctaaaatagcattacctggaagttttatcttgtatatga 30521302
Query: 496 cct 498
|||
Sbjct: 30521303 cct 30521305
Score = 121 bits (61), Expect = 6e-025
Identities = 100/113 (88%)
Strand = Plus / Plus
Query: 66 gcaaatatgtcctcactgagattgataattttggatgctttactcacaccacccctcgta 125
|||||||| || ||||| |||||||||||||||||||||||||| ||||||||||| ||
Sbjct: 30519848 gcaaatatatcttcactaagattgataattttggatgctttacttacaccaccccttgtg 30519907
Query: 126 atgtggaaaaggcgatcgaagatatcaggatgaccataatgaaaacgaaccct 178
| ||||||||| ||||| |||||||||||||| ||||| || || ||||||||
Sbjct: 30519908 aggtggaaaagacgatcaaagatatcaggatggccatagtggaatcgaaccct 30519960
Score = 119 bits (60), Expect = 2e-024
Identities = 107/122 (87%), Gaps = 3/122 (2%)
Strand = Plus / Plus
Query: 261 ctgcccgtaaatatgtgttctctgactccaagcatcgatggatatctcactccat---gt 317
||||| |||||||| || ||||| |||||||| || |||||||||||||| |||| ||
Sbjct: 30520983 ctgccagtaaatatatgctctcttactccaagtattgatggatatctcacaccatcatgt 30521042
Query: 318 ttcttctcaaactcttgcagcagatttctcattttcaaagcctcctccatatagtgctcc 377
|||||| |||||| | |||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 30521043 ttcttcagaaactcatccagcagatttctcattttcaaagcctcctccatataatgctcc 30521102
Query: 378 tg 379
||
Sbjct: 30521103 tg 30521104
Score = 99.6 bits (50), Expect = 2e-018
Identities = 105/125 (84%)
Strand = Plus / Plus
Query: 495 acctgatcaaggctctgaccaggctcatcaggttttgtaacagaagccttcaccaacact 554
||||||||||| || || || || |||| |||||||||||| ||||| |||||||| ||
Sbjct: 30522209 acctgatcaagactttgtcctggttcattaggttttgtaacggaagctttcaccaatgct 30522268
Query: 555 gagtagtaaaccttttcaatcttcttnnntctatcttgnctaggcgcntcaacttcatca 614
||||||||||| || ||| ||||||| ||||||||| ||||| || ||||| ||||||
Sbjct: 30522269 gagtagtaaactttgtcagtcttcttgtttctatcttggctaggtgcttcaacctcatca 30522328
Query: 615 atata 619
|||||
Sbjct: 30522329 atata 30522333
Score = 93.7 bits (47), Expect = 1e-016
Identities = 71/79 (89%)
Strand = Plus / Plus
Query: 186 ttggcaagcactcgttgtccaattgttacgaaactagtttcctgatttgacatgaaccat 245
||||||||||| || |||||||| || || ||||| || |||||||||||||||||||||
Sbjct: 30520805 ttggcaagcacacgctgtccaatagtcacaaaactggtctcctgatttgacatgaaccat 30520864
Query: 246 gcaagggatgacacactgc 264
||||||||||| |||||||
Sbjct: 30520865 gcaagggatgaaacactgc 30520883
Score = 63.9 bits (32), Expect = 1e-007
Identities = 47/52 (90%)
Strand = Plus / Plus
Query: 17 gtactcgtggtgagtaacattgccttcacgcaatgtggaattgaatcctgca 68
|||||| || ||||| |||||||||||||||||||| |||||||| ||||||
Sbjct: 30519719 gtactcatgatgagtgacattgccttcacgcaatgttgaattgaaacctgca 30519770
Score = 44.1 bits (22), Expect = 0.11
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 423 attgcatggttctgattttctggctttccttcacctaa 460
|||||||| ||||| |||||||| || |||||||||||
Sbjct: 4082227 attgcatgattctggttttctggtttaccttcacctaa 4082264
Score = 44.1 bits (22), Expect = 0.11
Identities = 52/62 (83%)
Strand = Plus / Plus
Query: 201 tgtccaattgttacgaaactagtttcctgatttgacatgaaccatgcaagggatgacaca 260
||||||||||| || || || |||||||| |||||||| ||||| || || || ||||||
Sbjct: 4081830 tgtccaattgtcacaaagcttgtttcctggtttgacataaaccacgcgagagaggacaca 4081889
Query: 261 ct 262
||
Sbjct: 4081890 ct 4081891
Score = 44.1 bits (22), Expect = 0.11
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 414 gtgaatattattgcatggttctgattttctggctttcc 451
|||||||| || ||||||||||||||||| || |||||
Sbjct: 730823 gtgaatataatagcatggttctgattttcaggttttcc 730860
>dbj|AP004082.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
clone:OJ1149_C12
Length = 120743
Score = 131 bits (66), Expect = 6e-028
Identities = 99/110 (90%)
Strand = Plus / Minus
Query: 66 gcaaatatgtcctcactgagattgataattttggatgctttactcacaccacccctcgta 125
||||||||||||||||| ||||||||||| ||||||||||| || ||||||||||||||
Sbjct: 91198 gcaaatatgtcctcactaagattgataatcttggatgctttgcttacaccacccctcgtg 91139
Query: 126 atgtggaaaaggcgatcgaagatatcaggatgaccataatgaaaacgaac 175
| ||||||||| ||||| || ||||||||||| ||||||||||| |||||
Sbjct: 91138 aggtggaaaagtcgatcaaaaatatcaggatgtccataatgaaatcgaac 91089
Score = 129 bits (65), Expect = 2e-027
Identities = 98/109 (89%)
Strand = Plus / Minus
Query: 376 cctgattcatatctatagtttggaggcattcgcctctggtgaatattattgcatggttct 435
|||||||||| ||||||||||| |||| ||| |||| || |||||||| ||||||||||
Sbjct: 90367 cctgattcatgtctatagtttgaaggccttcacctcgagtaaatattatcgcatggttct 90308
Query: 436 gattttctggctttccttcacctaaaatggcattacctggtagctttat 484
|||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct: 90307 gattttctggctttccttcacctagcattgcattacctggtagctttat 90259
Score = 97.6 bits (49), Expect = 8e-018
Identities = 107/128 (83%)
Strand = Plus / Minus
Query: 495 acctgatcaaggctctgaccaggctcatcaggttttgtaacagaagccttcaccaacact 554
||||||||||| |||||||||| || ||||| || || |||| |||||||||||| ||
Sbjct: 89716 acctgatcaagtttctgaccaggatcgtcaggcttggttacagctgccttcaccaacgct 89657
Query: 555 gagtagtaaaccttttcaatcttcttnnntctatcttgnctaggcgcntcaacttcatca 614
||||||||||||||||| |||||||| || |||| || ||| | ||||||||||||
Sbjct: 89656 gagtagtaaaccttttctatcttcttgttcctgtctttgcttggctcttcaacttcatca 89597
Query: 615 atataggc 622
||||||||
Sbjct: 89596 atataggc 89589
Score = 95.6 bits (48), Expect = 3e-017
Identities = 95/110 (86%), Gaps = 3/110 (2%)
Strand = Plus / Minus
Query: 261 ctgcccgtaaatatgtgttctctgactccaagcatcgatggatatctcactccat---gt 317
||||| || |||||||| ||||| || ||||| || |||||||| ||||| |||| ||
Sbjct: 90557 ctgccagtgaatatgtgctctctcacaccaagtattgatggatacctcacaccatcatgt 90498
Query: 318 ttcttctcaaactcttgcagcagatttctcattttcaaagcctcctccat 367
|||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct: 90497 ttcttcagaaactcttgcagcagatttctcattttcaaagtctcctccat 90448
Score = 73.8 bits (37), Expect = 1e-010
Identities = 76/89 (85%)
Strand = Plus / Minus
Query: 176 cctcaacggattggcaagcactcgttgtccaattgttacgaaactagtttcctgatttga 235
|||||| ||||||||||| || ||||||||||| || || ||||| || || ||||||||
Sbjct: 90736 cctcaaaggattggcaagtacccgttgtccaatagtgacaaaacttgtctcttgatttga 90677
Query: 236 catgaaccatgcaagggatgacacactgc 264
||||||||| ||||| || || |||||||
Sbjct: 90676 catgaaccacgcaagagaagaaacactgc 90648
>dbj|AP005290.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
clone:OJ1282_E10
Length = 107284
Score = 131 bits (66), Expect = 6e-028
Identities = 99/110 (90%)
Strand = Plus / Minus
Query: 66 gcaaatatgtcctcactgagattgataattttggatgctttactcacaccacccctcgta 125
||||||||||||||||| ||||||||||| ||||||||||| || ||||||||||||||
Sbjct: 11029 gcaaatatgtcctcactaagattgataatcttggatgctttgcttacaccacccctcgtg 10970
Query: 126 atgtggaaaaggcgatcgaagatatcaggatgaccataatgaaaacgaac 175
| ||||||||| ||||| || ||||||||||| ||||||||||| |||||
Sbjct: 10969 aggtggaaaagtcgatcaaaaatatcaggatgtccataatgaaatcgaac 10920
Score = 129 bits (65), Expect = 2e-027
Identities = 98/109 (89%)
Strand = Plus / Minus
Query: 376 cctgattcatatctatagtttggaggcattcgcctctggtgaatattattgcatggttct 435
|||||||||| ||||||||||| |||| ||| |||| || |||||||| ||||||||||
Sbjct: 10198 cctgattcatgtctatagtttgaaggccttcacctcgagtaaatattatcgcatggttct 10139
Query: 436 gattttctggctttccttcacctaaaatggcattacctggtagctttat 484
|||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct: 10138 gattttctggctttccttcacctagcattgcattacctggtagctttat 10090
Score = 97.6 bits (49), Expect = 8e-018
Identities = 107/128 (83%)
Strand = Plus / Minus
Query: 495 acctgatcaaggctctgaccaggctcatcaggttttgtaacagaagccttcaccaacact 554
||||||||||| |||||||||| || ||||| || || |||| |||||||||||| ||
Sbjct: 9547 acctgatcaagtttctgaccaggatcgtcaggcttggttacagctgccttcaccaacgct 9488
Query: 555 gagtagtaaaccttttcaatcttcttnnntctatcttgnctaggcgcntcaacttcatca 614
||||||||||||||||| |||||||| || |||| || ||| | ||||||||||||
Sbjct: 9487 gagtagtaaaccttttctatcttcttgttcctgtctttgcttggctcttcaacttcatca 9428
Query: 615 atataggc 622
||||||||
Sbjct: 9427 atataggc 9420
Score = 95.6 bits (48), Expect = 3e-017
Identities = 95/110 (86%), Gaps = 3/110 (2%)
Strand = Plus / Minus
Query: 261 ctgcccgtaaatatgtgttctctgactccaagcatcgatggatatctcactccat---gt 317
||||| || |||||||| ||||| || ||||| || |||||||| ||||| |||| ||
Sbjct: 10388 ctgccagtgaatatgtgctctctcacaccaagtattgatggatacctcacaccatcatgt 10329
Query: 318 ttcttctcaaactcttgcagcagatttctcattttcaaagcctcctccat 367
|||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct: 10328 ttcttcagaaactcttgcagcagatttctcattttcaaagtctcctccat 10279
Score = 73.8 bits (37), Expect = 1e-010
Identities = 76/89 (85%)
Strand = Plus / Minus
Query: 176 cctcaacggattggcaagcactcgttgtccaattgttacgaaactagtttcctgatttga 235
|||||| ||||||||||| || ||||||||||| || || ||||| || || ||||||||
Sbjct: 10567 cctcaaaggattggcaagtacccgttgtccaatagtgacaaaacttgtctcttgatttga 10508
Query: 236 catgaaccatgcaagggatgacacactgc 264
||||||||| ||||| || || |||||||
Sbjct: 10507 catgaaccacgcaagagaagaaacactgc 10479
>gb|AACV01005686.1| Oryza sativa (japonica cultivar-group) chromosome 2 Ctg005686, whole
genome shotgun sequence
Length = 38041
Score = 131 bits (66), Expect = 6e-028
Identities = 99/110 (90%)
Strand = Plus / Minus
Query: 66 gcaaatatgtcctcactgagattgataattttggatgctttactcacaccacccctcgta 125
||||||||||||||||| ||||||||||| ||||||||||| || ||||||||||||||
Sbjct: 5553 gcaaatatgtcctcactaagattgataatcttggatgctttgcttacaccacccctcgtg 5494
Query: 126 atgtggaaaaggcgatcgaagatatcaggatgaccataatgaaaacgaac 175
| ||||||||| ||||| || ||||||||||| ||||||||||| |||||
Sbjct: 5493 aggtggaaaagtcgatcaaaaatatcaggatgtccataatgaaatcgaac 5444
Score = 129 bits (65), Expect = 2e-027
Identities = 98/109 (89%)
Strand = Plus / Minus
Query: 376 cctgattcatatctatagtttggaggcattcgcctctggtgaatattattgcatggttct 435
|||||||||| ||||||||||| |||| ||| |||| || |||||||| ||||||||||
Sbjct: 4722 cctgattcatgtctatagtttgaaggccttcacctcgagtaaatattatcgcatggttct 4663
Query: 436 gattttctggctttccttcacctaaaatggcattacctggtagctttat 484
|||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct: 4662 gattttctggctttccttcacctagcattgcattacctggtagctttat 4614
Score = 97.6 bits (49), Expect = 8e-018
Identities = 107/128 (83%)
Strand = Plus / Minus
Query: 495 acctgatcaaggctctgaccaggctcatcaggttttgtaacagaagccttcaccaacact 554
||||||||||| |||||||||| || ||||| || || |||| |||||||||||| ||
Sbjct: 4071 acctgatcaagtttctgaccaggatcgtcaggcttggttacagctgccttcaccaacgct 4012
Query: 555 gagtagtaaaccttttcaatcttcttnnntctatcttgnctaggcgcntcaacttcatca 614
||||||||||||||||| |||||||| || |||| || ||| | ||||||||||||
Sbjct: 4011 gagtagtaaaccttttctatcttcttgttcctgtctttgcttggctcttcaacttcatca 3952
Query: 615 atataggc 622
||||||||
Sbjct: 3951 atataggc 3944
Score = 95.6 bits (48), Expect = 3e-017
Identities = 95/110 (86%), Gaps = 3/110 (2%)
Strand = Plus / Minus
Query: 261 ctgcccgtaaatatgtgttctctgactccaagcatcgatggatatctcactccat---gt 317
||||| || |||||||| ||||| || ||||| || |||||||| ||||| |||| ||
Sbjct: 4912 ctgccagtgaatatgtgctctctcacaccaagtattgatggatacctcacaccatcatgt 4853
Query: 318 ttcttctcaaactcttgcagcagatttctcattttcaaagcctcctccat 367
|||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct: 4852 ttcttcagaaactcttgcagcagatttctcattttcaaagtctcctccat 4803
Score = 73.8 bits (37), Expect = 1e-010
Identities = 76/89 (85%)
Strand = Plus / Minus
Query: 176 cctcaacggattggcaagcactcgttgtccaattgttacgaaactagtttcctgatttga 235
|||||| ||||||||||| || ||||||||||| || || ||||| || || ||||||||
Sbjct: 5091 cctcaaaggattggcaagtacccgttgtccaatagtgacaaaacttgtctcttgatttga 5032
Query: 236 catgaaccatgcaagggatgacacactgc 264
||||||||| ||||| || || |||||||
Sbjct: 5031 catgaaccacgcaagagaagaaacactgc 5003
>ref|NT_107182.1| Oryza sativa (japonica cultivar-group)
Length = 1785023
Score = 131 bits (66), Expect = 6e-028
Identities = 99/110 (90%)
Strand = Plus / Minus
Query: 66 gcaaatatgtcctcactgagattgataattttggatgctttactcacaccacccctcgta 125
||||||||||||||||| ||||||||||| ||||||||||| || ||||||||||||||
Sbjct: 1655756 gcaaatatgtcctcactaagattgataatcttggatgctttgcttacaccacccctcgtg 1655697
Query: 126 atgtggaaaaggcgatcgaagatatcaggatgaccataatgaaaacgaac 175
| ||||||||| ||||| || ||||||||||| ||||||||||| |||||
Sbjct: 1655696 aggtggaaaagtcgatcaaaaatatcaggatgtccataatgaaatcgaac 1655647
Score = 129 bits (65), Expect = 2e-027
Identities = 98/109 (89%)
Strand = Plus / Minus
Query: 376 cctgattcatatctatagtttggaggcattcgcctctggtgaatattattgcatggttct 435
|||||||||| ||||||||||| |||| ||| |||| || |||||||| ||||||||||
Sbjct: 1654925 cctgattcatgtctatagtttgaaggccttcacctcgagtaaatattatcgcatggttct 1654866
Query: 436 gattttctggctttccttcacctaaaatggcattacctggtagctttat 484
|||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct: 1654865 gattttctggctttccttcacctagcattgcattacctggtagctttat 1654817
Score = 97.6 bits (49), Expect = 8e-018
Identities = 107/128 (83%)
Strand = Plus / Minus
Query: 495 acctgatcaaggctctgaccaggctcatcaggttttgtaacagaagccttcaccaacact 554
||||||||||| |||||||||| || ||||| || || |||| |||||||||||| ||
Sbjct: 1654274 acctgatcaagtttctgaccaggatcgtcaggcttggttacagctgccttcaccaacgct 1654215
Query: 555 gagtagtaaaccttttcaatcttcttnnntctatcttgnctaggcgcntcaacttcatca 614
||||||||||||||||| |||||||| || |||| || ||| | ||||||||||||
Sbjct: 1654214 gagtagtaaaccttttctatcttcttgttcctgtctttgcttggctcttcaacttcatca 1654155
Query: 615 atataggc 622
||||||||
Sbjct: 1654154 atataggc 1654147
Score = 95.6 bits (48), Expect = 3e-017
Identities = 95/110 (86%), Gaps = 3/110 (2%)
Strand = Plus / Minus
Query: 261 ctgcccgtaaatatgtgttctctgactccaagcatcgatggatatctcactccat---gt 317
||||| || |||||||| ||||| || ||||| || |||||||| ||||| |||| ||
Sbjct: 1655115 ctgccagtgaatatgtgctctctcacaccaagtattgatggatacctcacaccatcatgt 1655056
Query: 318 ttcttctcaaactcttgcagcagatttctcattttcaaagcctcctccat 367
|||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct: 1655055 ttcttcagaaactcttgcagcagatttctcattttcaaagtctcctccat 1655006
Score = 73.8 bits (37), Expect = 1e-010
Identities = 76/89 (85%)
Strand = Plus / Minus
Query: 176 cctcaacggattggcaagcactcgttgtccaattgttacgaaactagtttcctgatttga 235
|||||| ||||||||||| || ||||||||||| || || ||||| || || ||||||||
Sbjct: 1655294 cctcaaaggattggcaagtacccgttgtccaatagtgacaaaacttgtctcttgatttga 1655235
Query: 236 catgaaccatgcaagggatgacacactgc 264
||||||||| ||||| || || |||||||
Sbjct: 1655234 catgaaccacgcaagagaagaaacactgc 1655206
>gb|CH401170.1| Oryza sativa (japonica cultivar-group) chromosome 2 scaffold000007 genomic
scaffold, whole genome shotgun sequence
Length = 22563205
Score = 131 bits (66), Expect = 6e-028
Identities = 99/110 (90%)
Strand = Plus / Minus
Query: 66 gcaaatatgtcctcactgagattgataattttggatgctttactcacaccacccctcgta 125
||||||||||||||||| ||||||||||| ||||||||||| || ||||||||||||||
Sbjct: 22449662 gcaaatatgtcctcactaagattgataatcttggatgctttgcttacaccacccctcgtg 22449603
Query: 126 atgtggaaaaggcgatcgaagatatcaggatgaccataatgaaaacgaac 175
| ||||||||| ||||| || ||||||||||| ||||||||||| |||||
Sbjct: 22449602 aggtggaaaagtcgatcaaaaatatcaggatgtccataatgaaatcgaac 22449553
Score = 129 bits (65), Expect = 2e-027
Identities = 98/109 (89%)
Strand = Plus / Minus
Query: 376 cctgattcatatctatagtttggaggcattcgcctctggtgaatattattgcatggttct 435
|||||||||| ||||||||||| |||| ||| |||| || |||||||| ||||||||||
Sbjct: 22448831 cctgattcatgtctatagtttgaaggccttcacctcgagtaaatattatcgcatggttct 22448772
Query: 436 gattttctggctttccttcacctaaaatggcattacctggtagctttat 484
|||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct: 22448771 gattttctggctttccttcacctagcattgcattacctggtagctttat 22448723
Score = 97.6 bits (49), Expect = 8e-018
Identities = 107/128 (83%)
Strand = Plus / Minus
Query: 495 acctgatcaaggctctgaccaggctcatcaggttttgtaacagaagccttcaccaacact 554
||||||||||| |||||||||| || ||||| || || |||| |||||||||||| ||
Sbjct: 22448180 acctgatcaagtttctgaccaggatcgtcaggcttggttacagctgccttcaccaacgct 22448121
Query: 555 gagtagtaaaccttttcaatcttcttnnntctatcttgnctaggcgcntcaacttcatca 614
||||||||||||||||| |||||||| || |||| || ||| | ||||||||||||
Sbjct: 22448120 gagtagtaaaccttttctatcttcttgttcctgtctttgcttggctcttcaacttcatca 22448061
Query: 615 atataggc 622
||||||||
Sbjct: 22448060 atataggc 22448053
Score = 95.6 bits (48), Expect = 3e-017
Identities = 95/110 (86%), Gaps = 3/110 (2%)
Strand = Plus / Minus
Query: 261 ctgcccgtaaatatgtgttctctgactccaagcatcgatggatatctcactccat---gt 317
||||| || |||||||| ||||| || ||||| || |||||||| ||||| |||| ||
Sbjct: 22449021 ctgccagtgaatatgtgctctctcacaccaagtattgatggatacctcacaccatcatgt 22448962
Query: 318 ttcttctcaaactcttgcagcagatttctcattttcaaagcctcctccat 367
|||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct: 22448961 ttcttcagaaactcttgcagcagatttctcattttcaaagtctcctccat 22448912
Score = 73.8 bits (37), Expect = 1e-010
Identities = 76/89 (85%)
Strand = Plus / Minus
Query: 176 cctcaacggattggcaagcactcgttgtccaattgttacgaaactagtttcctgatttga 235
|||||| ||||||||||| || ||||||||||| || || ||||| || || ||||||||
Sbjct: 22449200 cctcaaaggattggcaagtacccgttgtccaatagtgacaaaacttgtctcttgatttga 22449141
Query: 236 catgaaccatgcaagggatgacacactgc 264
||||||||| ||||| || || |||||||
Sbjct: 22449140 catgaaccacgcaagagaagaaacactgc 22449112
>gb|CM000139.1| Oryza sativa (japonica cultivar-group) chromosome 2, whole genome shotgun
sequence
Length = 36016269
Score = 131 bits (66), Expect = 6e-028
Identities = 99/110 (90%)
Strand = Plus / Minus
Query: 66 gcaaatatgtcctcactgagattgataattttggatgctttactcacaccacccctcgta 125
||||||||||||||||| ||||||||||| ||||||||||| || ||||||||||||||
Sbjct: 35902726 gcaaatatgtcctcactaagattgataatcttggatgctttgcttacaccacccctcgtg 35902667
Query: 126 atgtggaaaaggcgatcgaagatatcaggatgaccataatgaaaacgaac 175
| ||||||||| ||||| || ||||||||||| ||||||||||| |||||
Sbjct: 35902666 aggtggaaaagtcgatcaaaaatatcaggatgtccataatgaaatcgaac 35902617
Score = 129 bits (65), Expect = 2e-027
Identities = 98/109 (89%)
Strand = Plus / Minus
Query: 376 cctgattcatatctatagtttggaggcattcgcctctggtgaatattattgcatggttct 435
|||||||||| ||||||||||| |||| ||| |||| || |||||||| ||||||||||
Sbjct: 35901895 cctgattcatgtctatagtttgaaggccttcacctcgagtaaatattatcgcatggttct 35901836
Query: 436 gattttctggctttccttcacctaaaatggcattacctggtagctttat 484
|||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct: 35901835 gattttctggctttccttcacctagcattgcattacctggtagctttat 35901787
Score = 97.6 bits (49), Expect = 8e-018
Identities = 107/128 (83%)
Strand = Plus / Minus
Query: 495 acctgatcaaggctctgaccaggctcatcaggttttgtaacagaagccttcaccaacact 554
||||||||||| |||||||||| || ||||| || || |||| |||||||||||| ||
Sbjct: 35901244 acctgatcaagtttctgaccaggatcgtcaggcttggttacagctgccttcaccaacgct 35901185
Query: 555 gagtagtaaaccttttcaatcttcttnnntctatcttgnctaggcgcntcaacttcatca 614
||||||||||||||||| |||||||| || |||| || ||| | ||||||||||||
Sbjct: 35901184 gagtagtaaaccttttctatcttcttgttcctgtctttgcttggctcttcaacttcatca 35901125
Query: 615 atataggc 622
||||||||
Sbjct: 35901124 atataggc 35901117
Score = 95.6 bits (48), Expect = 3e-017
Identities = 95/110 (86%), Gaps = 3/110 (2%)
Strand = Plus / Minus
Query: 261 ctgcccgtaaatatgtgttctctgactccaagcatcgatggatatctcactccat---gt 317
||||| || |||||||| ||||| || ||||| || |||||||| ||||| |||| ||
Sbjct: 35902085 ctgccagtgaatatgtgctctctcacaccaagtattgatggatacctcacaccatcatgt 35902026
Query: 318 ttcttctcaaactcttgcagcagatttctcattttcaaagcctcctccat 367
|||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct: 35902025 ttcttcagaaactcttgcagcagatttctcattttcaaagtctcctccat 35901976
Score = 73.8 bits (37), Expect = 1e-010
Identities = 76/89 (85%)
Strand = Plus / Minus
Query: 176 cctcaacggattggcaagcactcgttgtccaattgttacgaaactagtttcctgatttga 235
|||||| ||||||||||| || ||||||||||| || || ||||| || || ||||||||
Sbjct: 35902264 cctcaaaggattggcaagtacccgttgtccaatagtgacaaaacttgtctcttgatttga 35902205
Query: 236 catgaaccatgcaagggatgacacactgc 264
||||||||| ||||| || || |||||||
Sbjct: 35902204 catgaaccacgcaagagaagaaacactgc 35902176
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
sequence
Length = 35954743
Score = 131 bits (66), Expect = 6e-028
Identities = 99/110 (90%)
Strand = Plus / Minus
Query: 66 gcaaatatgtcctcactgagattgataattttggatgctttactcacaccacccctcgta 125
||||||||||||||||| ||||||||||| ||||||||||| || ||||||||||||||
Sbjct: 35820483 gcaaatatgtcctcactaagattgataatcttggatgctttgcttacaccacccctcgtg 35820424
Query: 126 atgtggaaaaggcgatcgaagatatcaggatgaccataatgaaaacgaac 175
| ||||||||| ||||| || ||||||||||| ||||||||||| |||||
Sbjct: 35820423 aggtggaaaagtcgatcaaaaatatcaggatgtccataatgaaatcgaac 35820374
Score = 129 bits (65), Expect = 2e-027
Identities = 98/109 (89%)
Strand = Plus / Minus
Query: 376 cctgattcatatctatagtttggaggcattcgcctctggtgaatattattgcatggttct 435
|||||||||| ||||||||||| |||| ||| |||| || |||||||| ||||||||||
Sbjct: 35819652 cctgattcatgtctatagtttgaaggccttcacctcgagtaaatattatcgcatggttct 35819593
Query: 436 gattttctggctttccttcacctaaaatggcattacctggtagctttat 484
|||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct: 35819592 gattttctggctttccttcacctagcattgcattacctggtagctttat 35819544
Score = 97.6 bits (49), Expect = 8e-018
Identities = 107/128 (83%)
Strand = Plus / Minus
Query: 495 acctgatcaaggctctgaccaggctcatcaggttttgtaacagaagccttcaccaacact 554
||||||||||| |||||||||| || ||||| || || |||| |||||||||||| ||
Sbjct: 35819001 acctgatcaagtttctgaccaggatcgtcaggcttggttacagctgccttcaccaacgct 35818942
Query: 555 gagtagtaaaccttttcaatcttcttnnntctatcttgnctaggcgcntcaacttcatca 614
||||||||||||||||| |||||||| || |||| || ||| | ||||||||||||
Sbjct: 35818941 gagtagtaaaccttttctatcttcttgttcctgtctttgcttggctcttcaacttcatca 35818882
Query: 615 atataggc 622
||||||||
Sbjct: 35818881 atataggc 35818874
Score = 95.6 bits (48), Expect = 3e-017
Identities = 95/110 (86%), Gaps = 3/110 (2%)
Strand = Plus / Minus
Query: 261 ctgcccgtaaatatgtgttctctgactccaagcatcgatggatatctcactccat---gt 317
||||| || |||||||| ||||| || ||||| || |||||||| ||||| |||| ||
Sbjct: 35819842 ctgccagtgaatatgtgctctctcacaccaagtattgatggatacctcacaccatcatgt 35819783
Query: 318 ttcttctcaaactcttgcagcagatttctcattttcaaagcctcctccat 367
|||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct: 35819782 ttcttcagaaactcttgcagcagatttctcattttcaaagtctcctccat 35819733
Score = 73.8 bits (37), Expect = 1e-010
Identities = 76/89 (85%)
Strand = Plus / Minus
Query: 176 cctcaacggattggcaagcactcgttgtccaattgttacgaaactagtttcctgatttga 235
|||||| ||||||||||| || ||||||||||| || || ||||| || || ||||||||
Sbjct: 35820021 cctcaaaggattggcaagtacccgttgtccaatagtgacaaaacttgtctcttgatttga 35819962
Query: 236 catgaaccatgcaagggatgacacactgc 264
||||||||| ||||| || || |||||||
Sbjct: 35819961 catgaaccacgcaagagaagaaacactgc 35819933
>gb|AACV01014976.1| Oryza sativa (japonica cultivar-group) chromosome 6 Ctg014976, whole
genome shotgun sequence
Length = 21689
Score = 99.6 bits (50), Expect = 2e-018
Identities = 105/125 (84%)
Strand = Plus / Minus
Query: 495 acctgatcaaggctctgaccaggctcatcaggttttgtaacagaagccttcaccaacact 554
||||||||||| || || || || |||| |||||||||||| ||||| |||||||| ||
Sbjct: 21513 acctgatcaagactttgtcctggttcattaggttttgtaacggaagctttcaccaatgct 21454
Query: 555 gagtagtaaaccttttcaatcttcttnnntctatcttgnctaggcgcntcaacttcatca 614
||||||||||| || ||| ||||||| ||||||||| ||||| || ||||| ||||||
Sbjct: 21453 gagtagtaaactttgtcagtcttcttgtttctatcttggctaggtgcttcaacctcatca 21394
Query: 615 atata 619
|||||
Sbjct: 21393 atata 21389
>ref|NM_187591.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 4929
Score = 87.7 bits (44), Expect = 8e-015
Identities = 107/128 (83%)
Strand = Plus / Minus
Query: 327 aactcttgcagcagatttctcattttcaaagcctcctccatatagtgctcctgattcata 386
|||||||| |||| |||||||||||| | || || |||||||||| ||||| |||||
Sbjct: 3149 aactcttgaagcaaatttctcattttaagtgcttcttccatatagttatcctggttcatg 3090
Query: 387 tctatagtttggaggcattcgcctctggtgaatattattgcatggttctgattttctggc 446
||||| ||||| |||| ||| || | |||||| ||||||||||| || |||||||| |||
Sbjct: 3089 tctatggtttgcaggccttcaccacgggtgaagattattgcatgattttgattttcaggc 3030
Query: 447 tttccttc 454
||||||||
Sbjct: 3029 tttccttc 3022
>gb|AQ363486.2|AQ363486 nbxb0059C14r CUGI Rice BAC Library Oryza sativa (japonica
cultivar-group) genomic clone nbxb0059C14r, DNA sequence
Length = 439
Score = 67.9 bits (34), Expect = 7e-009
Identities = 64/74 (86%)
Strand = Plus / Plus
Query: 189 gcaagcactcgttgtccaattgttacgaaactagtttcctgatttgacatgaaccatgca 248
||||| || ||||||||||| || ||||||||||| || || |||||||| ||||| |||
Sbjct: 167 gcaagaacacgttgtccaatggtaacgaaactagtctcttggtttgacataaaccacgca 226
Query: 249 agggatgacacact 262
|||||||| |||||
Sbjct: 227 agggatgaaacact 240
>gb|AACV01001413.1| Oryza sativa (japonica cultivar-group) chromosome 1 Ctg001413, whole
genome shotgun sequence
Length = 32302
Score = 67.9 bits (34), Expect = 7e-009
Identities = 64/74 (86%)
Strand = Plus / Plus
Query: 189 gcaagcactcgttgtccaattgttacgaaactagtttcctgatttgacatgaaccatgca 248
||||| || ||||||||||| || ||||||||||| || || |||||||| ||||| |||
Sbjct: 10258 gcaagaacacgttgtccaatggtaacgaaactagtctcttggtttgacataaaccacgca 10317
Query: 249 agggatgacacact 262
|||||||| |||||
Sbjct: 10318 agggatgaaacact 10331
>dbj|BA000010.8| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43342410
Score = 67.9 bits (34), Expect = 7e-009
Identities = 64/74 (86%)
Strand = Plus / Plus
Query: 189 gcaagcactcgttgtccaattgttacgaaactagtttcctgatttgacatgaaccatgca 248
||||| || ||||||||||| || ||||||||||| || || |||||||| ||||| |||
Sbjct: 19382010 gcaagaacacgttgtccaatggtaacgaaactagtctcttggtttgacataaaccacgca 19382069
Query: 249 agggatgacacact 262
|||||||| |||||
Sbjct: 19382070 agggatgaaacact 19382083
Score = 63.9 bits (32), Expect = 1e-007
Identities = 95/116 (81%)
Strand = Plus / Plus
Query: 63 cctgcaaatatgtcctcactgagattgataattttggatgctttactcacaccacccctc 122
|||| |||||| || ||||| ||||| ||| | || || |||||||| | ||||| ||
Sbjct: 19335755 cctgaaaatatatcttcacttagatttatagtctttgaggctttacttatgccacctcta 19335814
Query: 123 gtaatgtggaaaaggcgatcgaagatatcaggatgaccataatgaaaacgaaccct 178
||||| ||||| || | |||||| |||||||||||||||||||| || ||||||||
Sbjct: 19335815 gtaatatggaagagtctatcgaaaatatcaggatgaccataatggaaccgaaccct 19335870
Score = 46.1 bits (23), Expect = 0.027
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 57 ttgaatcctgcaaatatgtcctcactgagattgat 91
||||| ||||||||||||||||| |||| ||||||
Sbjct: 31718186 ttgaaacctgcaaatatgtcctcgctgatattgat 31718220
Score = 44.1 bits (22), Expect = 0.11
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 414 gtgaatattattgcatggttctgattttctggctttcc 451
|||||||| || ||||||||||||||||| || |||||
Sbjct: 31718543 gtgaatatgatggcatggttctgattttcaggttttcc 31718580
>ref|NM_193203.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 1809
Score = 67.9 bits (34), Expect = 7e-009
Identities = 118/146 (80%)
Strand = Plus / Minus
Query: 33 acattgccttcacgcaatgtggaattgaatcctgcaaatatgtcctcactgagattgata 92
||||| ||||| | || ||| ||||| || |||| |||||| || ||||| ||||| |||
Sbjct: 191 acattcccttctctcattgttgaattaaaacctgaaaatatatcttcacttagatttata 132
Query: 93 attttggatgctttactcacaccacccctcgtaatgtggaaaaggcgatcgaagatatca 152
| || || |||||||| | ||||| || ||||| ||||| || | |||||| ||||||
Sbjct: 131 gtctttgaggctttacttatgccacctctagtaatatggaagagtctatcgaaaatatca 72
Query: 153 ggatgaccataatgaaaacgaaccct 178
|||||||||||||| || ||||||||
Sbjct: 71 ggatgaccataatggaaccgaaccct 46
>ref|NM_193211.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 5634
Score = 67.9 bits (34), Expect = 7e-009
Identities = 64/74 (86%)
Strand = Plus / Minus
Query: 189 gcaagcactcgttgtccaattgttacgaaactagtttcctgatttgacatgaaccatgca 248
||||| || ||||||||||| || ||||||||||| || || |||||||| ||||| |||
Sbjct: 3989 gcaagaacacgttgtccaatggtaacgaaactagtctcttggtttgacataaaccacgca 3930
Query: 249 agggatgacacact 262
|||||||| |||||
Sbjct: 3929 agggatgaaacact 3916
Score = 46.1 bits (23), Expect = 0.027
Identities = 56/67 (83%)
Strand = Plus / Minus
Query: 27 tgagtaacattgccttcacgcaatgtggaattgaatcctgcaaatatgtcctcactgaga 86
||||||||||| |||| |||| || ||||||||||||||||| || ||||| || ||
Sbjct: 4166 tgagtaacatttccttgccgcagggttgaattgaatcctgcaaagatatcctcgctaagg 4107
Query: 87 ttgataa 93
|||||||
Sbjct: 4106 ttgataa 4100
>ref|NT_079926.2| Oryza sativa (japonica cultivar-group)
Length = 8469246
Score = 67.9 bits (34), Expect = 7e-009
Identities = 64/74 (86%)
Strand = Plus / Plus
Query: 189 gcaagcactcgttgtccaattgttacgaaactagtttcctgatttgacatgaaccatgca 248
||||| || ||||||||||| || ||||||||||| || || |||||||| ||||| |||
Sbjct: 2300242 gcaagaacacgttgtccaatggtaacgaaactagtctcttggtttgacataaaccacgca 2300301
Query: 249 agggatgacacact 262
|||||||| |||||
Sbjct: 2300302 agggatgaaacact 2300315
Score = 63.9 bits (32), Expect = 1e-007
Identities = 95/116 (81%)
Strand = Plus / Plus
Query: 63 cctgcaaatatgtcctcactgagattgataattttggatgctttactcacaccacccctc 122
|||| |||||| || ||||| ||||| ||| | || || |||||||| | ||||| ||
Sbjct: 2253987 cctgaaaatatatcttcacttagatttatagtctttgaggctttacttatgccacctcta 2254046
Query: 123 gtaatgtggaaaaggcgatcgaagatatcaggatgaccataatgaaaacgaaccct 178
||||| ||||| || | |||||| |||||||||||||||||||| || ||||||||
Sbjct: 2254047 gtaatatggaagagtctatcgaaaatatcaggatgaccataatggaaccgaaccct 2254102
>dbj|AP003447.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
clone:OJ1619_F12
Length = 133028
Score = 67.9 bits (34), Expect = 7e-009
Identities = 64/74 (86%)
Strand = Plus / Plus
Query: 189 gcaagcactcgttgtccaattgttacgaaactagtttcctgatttgacatgaaccatgca 248
||||| || ||||||||||| || ||||||||||| || || |||||||| ||||| |||
Sbjct: 122914 gcaagaacacgttgtccaatggtaacgaaactagtctcttggtttgacataaaccacgca 122973
Query: 249 agggatgacacact 262
|||||||| |||||
Sbjct: 122974 agggatgaaacact 122987
Score = 63.9 bits (32), Expect = 1e-007
Identities = 95/116 (81%)
Strand = Plus / Plus
Query: 63 cctgcaaatatgtcctcactgagattgataattttggatgctttactcacaccacccctc 122
|||| |||||| || ||||| ||||| ||| | || || |||||||| | ||||| ||
Sbjct: 76659 cctgaaaatatatcttcacttagatttatagtctttgaggctttacttatgccacctcta 76718
Query: 123 gtaatgtggaaaaggcgatcgaagatatcaggatgaccataatgaaaacgaaccct 178
||||| ||||| || | |||||| |||||||||||||||||||| || ||||||||
Sbjct: 76719 gtaatatggaagagtctatcgaaaatatcaggatgaccataatggaaccgaaccct 76774
>dbj|AP003445.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
clone:OJ1029_F04
Length = 141834
Score = 67.9 bits (34), Expect = 7e-009
Identities = 64/74 (86%)
Strand = Plus / Plus
Query: 189 gcaagcactcgttgtccaattgttacgaaactagtttcctgatttgacatgaaccatgca 248
||||| || ||||||||||| || ||||||||||| || || |||||||| ||||| |||
Sbjct: 31298 gcaagaacacgttgtccaatggtaacgaaactagtctcttggtttgacataaaccacgca 31357
Query: 249 agggatgacacact 262
|||||||| |||||
Sbjct: 31358 agggatgaaacact 31371
>gb|CH401166.1| Oryza sativa (japonica cultivar-group) chromosome 1 scaffold000003 genomic
scaffold, whole genome shotgun sequence
Length = 8539496
Score = 67.9 bits (34), Expect = 7e-009
Identities = 64/74 (86%)
Strand = Plus / Plus
Query: 189 gcaagcactcgttgtccaattgttacgaaactagtttcctgatttgacatgaaccatgca 248
||||| || ||||||||||| || ||||||||||| || || |||||||| ||||| |||
Sbjct: 2433673 gcaagaacacgttgtccaatggtaacgaaactagtctcttggtttgacataaaccacgca 2433732
Query: 249 agggatgacacact 262
|||||||| |||||
Sbjct: 2433733 agggatgaaacact 2433746
Score = 63.9 bits (32), Expect = 1e-007
Identities = 95/116 (81%)
Strand = Plus / Plus
Query: 63 cctgcaaatatgtcctcactgagattgataattttggatgctttactcacaccacccctc 122
|||| |||||| || ||||| ||||| ||| | || || |||||||| | ||||| ||
Sbjct: 2386873 cctgaaaatatatcttcacttagatttatagtctttgaggctttacttatgccacctcta 2386932
Query: 123 gtaatgtggaaaaggcgatcgaagatatcaggatgaccataatgaaaacgaaccct 178
||||| ||||| || | |||||| |||||||||||||||||||| || ||||||||
Sbjct: 2386933 gtaatatggaagagtctatcgaaaatatcaggatgaccataatggaaccgaaccct 2386988
>gb|CM000138.1| Oryza sativa (japonica cultivar-group) chromosome 1, whole genome shotgun
sequence
Length = 42596331
Score = 67.9 bits (34), Expect = 7e-009
Identities = 64/74 (86%)
Strand = Plus / Plus
Query: 189 gcaagcactcgttgtccaattgttacgaaactagtttcctgatttgacatgaaccatgca 248
||||| || ||||||||||| || ||||||||||| || || |||||||| ||||| |||
Sbjct: 19058796 gcaagaacacgttgtccaatggtaacgaaactagtctcttggtttgacataaaccacgca 19058855
Query: 249 agggatgacacact 262
|||||||| |||||
Sbjct: 19058856 agggatgaaacact 19058869
Score = 63.9 bits (32), Expect = 1e-007
Identities = 95/116 (81%)
Strand = Plus / Plus
Query: 63 cctgcaaatatgtcctcactgagattgataattttggatgctttactcacaccacccctc 122
|||| |||||| || ||||| ||||| ||| | || || |||||||| | ||||| ||
Sbjct: 19011996 cctgaaaatatatcttcacttagatttatagtctttgaggctttacttatgccacctcta 19012055
Query: 123 gtaatgtggaaaaggcgatcgaagatatcaggatgaccataatgaaaacgaaccct 178
||||| ||||| || | |||||| |||||||||||||||||||| || ||||||||
Sbjct: 19012056 gtaatatggaagagtctatcgaaaatatcaggatgaccataatggaaccgaaccct 19012111
Score = 46.1 bits (23), Expect = 0.027
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 57 ttgaatcctgcaaatatgtcctcactgagattgat 91
||||| ||||||||||||||||| |||| ||||||
Sbjct: 31269933 ttgaaacctgcaaatatgtcctcgctgatattgat 31269967
Score = 44.1 bits (22), Expect = 0.11
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 414 gtgaatattattgcatggttctgattttctggctttcc 451
|||||||| || ||||||||||||||||| || |||||
Sbjct: 31270290 gtgaatatgatggcatggttctgattttcaggttttcc 31270327
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43261740
Score = 67.9 bits (34), Expect = 7e-009
Identities = 64/74 (86%)
Strand = Plus / Plus
Query: 189 gcaagcactcgttgtccaattgttacgaaactagtttcctgatttgacatgaaccatgca 248
||||| || ||||||||||| || ||||||||||| || || |||||||| ||||| |||
Sbjct: 19303293 gcaagaacacgttgtccaatggtaacgaaactagtctcttggtttgacataaaccacgca 19303352
Query: 249 agggatgacacact 262
|||||||| |||||
Sbjct: 19303353 agggatgaaacact 19303366
Score = 63.9 bits (32), Expect = 1e-007
Identities = 95/116 (81%)
Strand = Plus / Plus
Query: 63 cctgcaaatatgtcctcactgagattgataattttggatgctttactcacaccacccctc 122
|||| |||||| || ||||| ||||| ||| | || || |||||||| | ||||| ||
Sbjct: 19257038 cctgaaaatatatcttcacttagatttatagtctttgaggctttacttatgccacctcta 19257097
Query: 123 gtaatgtggaaaaggcgatcgaagatatcaggatgaccataatgaaaacgaaccct 178
||||| ||||| || | |||||| |||||||||||||||||||| || ||||||||
Sbjct: 19257098 gtaatatggaagagtctatcgaaaatatcaggatgaccataatggaaccgaaccct 19257153
Score = 46.1 bits (23), Expect = 0.027
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 57 ttgaatcctgcaaatatgtcctcactgagattgat 91
||||| ||||||||||||||||| |||| ||||||
Sbjct: 31637516 ttgaaacctgcaaatatgtcctcgctgatattgat 31637550
Score = 44.1 bits (22), Expect = 0.11
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 414 gtgaatattattgcatggttctgattttctggctttcc 451
|||||||| || ||||||||||||||||| || |||||
Sbjct: 31637873 gtgaatatgatggcatggttctgattttcaggttttcc 31637910
>dbj|AB157838.1| Oryza sativa (japonica cultivar-group) DNA, clone:T30153T, 3'
flanking sequence of Tos17 insertion in rice strain
NG2502, genomic survey sequence
Length = 485
Score = 63.9 bits (32), Expect = 1e-007
Identities = 95/116 (81%)
Strand = Plus / Minus
Query: 63 cctgcaaatatgtcctcactgagattgataattttggatgctttactcacaccacccctc 122
|||| |||||| || ||||| ||||| ||| | || || |||||||| | ||||| ||
Sbjct: 330 cctgaaaatatatcttcacttagatttatagtctttgaggctttacttatgccacctcta 271
Query: 123 gtaatgtggaaaaggcgatcgaagatatcaggatgaccataatgaaaacgaaccct 178
||||| ||||| || | |||||| |||||||||||||||||||| || ||||||||
Sbjct: 270 gtaatatggaagagtctatcgaaaatatcaggatgaccataatggaaccgaaccct 215
>gb|AACV01001409.1| Oryza sativa (japonica cultivar-group) chromosome 1 Ctg001409, whole
genome shotgun sequence
Length = 30879
Score = 63.9 bits (32), Expect = 1e-007
Identities = 95/116 (81%)
Strand = Plus / Plus
Query: 63 cctgcaaatatgtcctcactgagattgataattttggatgctttactcacaccacccctc 122
|||| |||||| || ||||| ||||| ||| | || || |||||||| | ||||| ||
Sbjct: 10073 cctgaaaatatatcttcacttagatttatagtctttgaggctttacttatgccacctcta 10132
Query: 123 gtaatgtggaaaaggcgatcgaagatatcaggatgaccataatgaaaacgaaccct 178
||||| ||||| || | |||||| |||||||||||||||||||| || ||||||||
Sbjct: 10133 gtaatatggaagagtctatcgaaaatatcaggatgaccataatggaaccgaaccct 10188
>dbj|AG022680.1| Oryza sativa (japonica cultivar-group) DNA, clone:T05193T, 3'
flanking sequence of Tos17 insertion in rice strain
NC2543, genomic survey sequence
Length = 486
Score = 61.9 bits (31), Expect = 5e-007
Identities = 67/79 (84%)
Strand = Plus / Plus
Query: 376 cctgattcatatctatagtttggaggcattcgcctctggtgaatattattgcatggttct 435
|||| ||||| ||||| ||||| |||| ||| || | |||||| ||||||||||| || |
Sbjct: 211 cctggttcatgtctatggtttgcaggccttcaccacgggtgaagattattgcatgatttt 270
Query: 436 gattttctggctttccttc 454
||||||| |||||||||||
Sbjct: 271 gattttcaggctttccttc 289
>gb|AC104427.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1015F07,
complete sequence
Length = 117612
Score = 61.9 bits (31), Expect = 5e-007
Identities = 67/79 (84%)
Strand = Plus / Plus
Query: 376 cctgattcatatctatagtttggaggcattcgcctctggtgaatattattgcatggttct 435
|||| ||||| ||||| ||||| |||| ||| || | |||||| ||||||||||| || |
Sbjct: 102532 cctggttcatgtctatggtttgcaggccttcaccacgggtgaagattattgcatgatttt 102591
Query: 436 gattttctggctttccttc 454
||||||| |||||||||||
Sbjct: 102592 gattttcaggctttccttc 102610
>gb|AC144426.1| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJA1015F07,
complete sequence
Length = 127098
Score = 61.9 bits (31), Expect = 5e-007
Identities = 67/79 (84%)
Strand = Plus / Plus
Query: 376 cctgattcatatctatagtttggaggcattcgcctctggtgaatattattgcatggttct 435
|||| ||||| ||||| ||||| |||| ||| || | |||||| ||||||||||| || |
Sbjct: 44920 cctggttcatgtctatggtttgcaggccttcaccacgggtgaagattattgcatgatttt 44979
Query: 436 gattttctggctttccttc 454
||||||| |||||||||||
Sbjct: 44980 gattttcaggctttccttc 44998
>gb|AACV01005795.1| Oryza sativa (japonica cultivar-group) chromosome 3 Ctg005795, whole
genome shotgun sequence
Length = 23395
Score = 61.9 bits (31), Expect = 5e-007
Identities = 67/79 (84%)
Strand = Plus / Minus
Query: 376 cctgattcatatctatagtttggaggcattcgcctctggtgaatattattgcatggttct 435
|||| ||||| ||||| ||||| |||| ||| || | |||||| ||||||||||| || |
Sbjct: 18514 cctggttcatgtctatggtttgcaggccttcaccacgggtgaagattattgcatgatttt 18455
Query: 436 gattttctggctttccttc 454
||||||| |||||||||||
Sbjct: 18454 gattttcaggctttccttc 18436
>ref|NT_107183.1| Oryza sativa (japonica cultivar-group)
Length = 1680144
Score = 61.9 bits (31), Expect = 5e-007
Identities = 67/79 (84%)
Strand = Plus / Plus
Query: 376 cctgattcatatctatagtttggaggcattcgcctctggtgaatattattgcatggttct 435
|||| ||||| ||||| ||||| |||| ||| || | |||||| ||||||||||| || |
Sbjct: 1565357 cctggttcatgtctatggtttgcaggccttcaccacgggtgaagattattgcatgatttt 1565416
Query: 436 gattttctggctttccttc 454
||||||| |||||||||||
Sbjct: 1565417 gattttcaggctttccttc 1565435
Score = 42.1 bits (21), Expect = 0.43
Identities = 39/45 (86%)
Strand = Plus / Minus
Query: 413 ggtgaatattattgcatggttctgattttctggctttccttcacc 457
|||||||||||| ||||| || || ||||||||||| || |||||
Sbjct: 1047026 ggtgaatattatggcatgattttggttttctggcttcccctcacc 1046982
>gb|CH401173.1| Oryza sativa (japonica cultivar-group) chromosome 3 scaffold000010 genomic
scaffold, whole genome shotgun sequence
Length = 13858245
Score = 61.9 bits (31), Expect = 5e-007
Identities = 67/79 (84%)
Strand = Plus / Plus
Query: 376 cctgattcatatctatagtttggaggcattcgcctctggtgaatattattgcatggttct 435
|||| ||||| ||||| ||||| |||| ||| || | |||||| ||||||||||| || |
Sbjct: 1571413 cctggttcatgtctatggtttgcaggccttcaccacgggtgaagattattgcatgatttt 1571472
Query: 436 gattttctggctttccttc 454
||||||| |||||||||||
Sbjct: 1571473 gattttcaggctttccttc 1571491
Score = 42.1 bits (21), Expect = 0.43
Identities = 39/45 (86%)
Strand = Plus / Minus
Query: 413 ggtgaatattattgcatggttctgattttctggctttccttcacc 457
|||||||||||| ||||| || || ||||||||||| || |||||
Sbjct: 1045205 ggtgaatattatggcatgattttggttttctggcttcccctcacc 1045161
>gb|CM000140.1| Oryza sativa (japonica cultivar-group) chromosome 3, whole genome shotgun
sequence
Length = 37803064
Score = 61.9 bits (31), Expect = 5e-007
Identities = 67/79 (84%)
Strand = Plus / Plus
Query: 376 cctgattcatatctatagtttggaggcattcgcctctggtgaatattattgcatggttct 435
|||| ||||| ||||| ||||| |||| ||| || | |||||| ||||||||||| || |
Sbjct: 1763775 cctggttcatgtctatggtttgcaggccttcaccacgggtgaagattattgcatgatttt 1763834
Query: 436 gattttctggctttccttc 454
||||||| |||||||||||
Sbjct: 1763835 gattttcaggctttccttc 1763853
Score = 42.1 bits (21), Expect = 0.43
Identities = 39/45 (86%)
Strand = Plus / Minus
Query: 413 ggtgaatattattgcatggttctgattttctggctttccttcacc 457
|||||||||||| ||||| || || ||||||||||| || |||||
Sbjct: 1237567 ggtgaatattatggcatgattttggttttctggcttcccctcacc 1237523
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
sequence
Length = 36192742
Score = 61.9 bits (31), Expect = 5e-007
Identities = 67/79 (84%)
Strand = Plus / Plus
Query: 376 cctgattcatatctatagtttggaggcattcgcctctggtgaatattattgcatggttct 435
|||| ||||| ||||| ||||| |||| ||| || | |||||| ||||||||||| || |
Sbjct: 1565357 cctggttcatgtctatggtttgcaggccttcaccacgggtgaagattattgcatgatttt 1565416
Query: 436 gattttctggctttccttc 454
||||||| |||||||||||
Sbjct: 1565417 gattttcaggctttccttc 1565435
Score = 42.1 bits (21), Expect = 0.43
Identities = 39/45 (86%)
Strand = Plus / Minus
Query: 413 ggtgaatattattgcatggttctgattttctggctttccttcacc 457
|||||||||||| ||||| || || ||||||||||| || |||||
Sbjct: 1047026 ggtgaatattatggcatgattttggttttctggcttcccctcacc 1046982
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
Length = 36102668
Score = 61.9 bits (31), Expect = 5e-007
Identities = 67/79 (84%)
Strand = Plus / Plus
Query: 376 cctgattcatatctatagtttggaggcattcgcctctggtgaatattattgcatggttct 435
|||| ||||| ||||| ||||| |||| ||| || | |||||| ||||||||||| || |
Sbjct: 1565359 cctggttcatgtctatggtttgcaggccttcaccacgggtgaagattattgcatgatttt 1565418
Query: 436 gattttctggctttccttc 454
||||||| |||||||||||
Sbjct: 1565419 gattttcaggctttccttc 1565437
Score = 42.1 bits (21), Expect = 0.43
Identities = 39/45 (86%)
Strand = Plus / Minus
Query: 413 ggtgaatattattgcatggttctgattttctggctttccttcacc 457
|||||||||||| ||||| || || ||||||||||| || |||||
Sbjct: 1047028 ggtgaatattatggcatgattttggttttctggcttcccctcacc 1046984
>dbj|AK062279.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-100-C02, full
insert sequence
Length = 2219
Score = 60.0 bits (30), Expect = 2e-006
Identities = 84/102 (82%)
Strand = Plus / Minus
Query: 327 aactcttgcagcagatttctcattttcaaagcctcctccatatagtgctcctgattcata 386
|||||||| |||| |||||||||||| | || || |||||||||| ||||| |||||
Sbjct: 102 aactcttgaagcaaatttctcattttaagtgcttcttccatatagttatcctggttcatg 43
Query: 387 tctatagtttggaggcattcgcctctggtgaatattattgca 428
||||| ||||| |||| ||| || | |||||| |||||||||
Sbjct: 42 tctatggtttgcaggccttcaccacgggtgaagattattgca 1
>dbj|AK100271.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023069L11, full
insert sequence
Length = 2442
Score = 60.0 bits (30), Expect = 2e-006
Identities = 93/114 (81%)
Strand = Plus / Minus
Query: 149 atcaggatgaccataatgaaaacgaaccctcaacggattggcaagcactcgttgtccaat 208
||||||||| || || |||||||| ||| |||| ||||| || || |||| ||||||||
Sbjct: 1757 atcaggatgcccgtagtgaaaacgtaccttcaatggattagctagtactctctgtccaat 1698
Query: 209 tgttacgaaactagtttcctgatttgacatgaaccatgcaagggatgacacact 262
||| || || || |||||||| |||||||| ||||| || || || ||||||||
Sbjct: 1697 tgtcacaaagcttgtttcctggtttgacataaaccacgcgagagaggacacact 1644
Score = 44.1 bits (22), Expect = 0.11
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 423 attgcatggttctgattttctggctttccttcacctaa 460
|||||||| ||||| |||||||| || |||||||||||
Sbjct: 1483 attgcatgattctggttttctggtttaccttcacctaa 1446
>gb|CG409152.1|CG409152 Ds848 Ds insertion lines Oryza sativa (japonica cultivar-group)
genomic, DNA sequence
Length = 301
Score = 52.0 bits (26), Expect = 4e-004
Identities = 38/42 (90%)
Strand = Plus / Plus
Query: 413 ggtgaatattattgcatggttctgattttctggctttccttc 454
|||||| ||||||||||| || |||||||| |||||||||||
Sbjct: 1 ggtgaagattattgcatgattttgattttcaggctttccttc 42
>gb|CG409286.1|CG409286 Ds982 Ds insertion lines Oryza sativa (japonica cultivar-group)
genomic, DNA sequence
Length = 301
Score = 52.0 bits (26), Expect = 4e-004
Identities = 38/42 (90%)
Strand = Plus / Plus
Query: 413 ggtgaatattattgcatggttctgattttctggctttccttc 454
|||||| ||||||||||| || |||||||| |||||||||||
Sbjct: 1 ggtgaagattattgcatgattttgattttcaggctttccttc 42
>dbj|AG213548.1| Oryza sativa (japonica cultivar-group) DNA, clone:T09682T, 3'
flanking sequence of Tos17 insertion in rice strain
ND4557, genomic survey sequence
Length = 353
Score = 46.1 bits (23), Expect = 0.027
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggtactcg 23
|||||||||||||||||||||||
Sbjct: 164 gcggccgcccgggcaggtactcg 142
>dbj|AG024555.1| Oryza sativa (japonica cultivar-group) DNA, clone:T00101T, 3'
flanking sequence of Tos17 insertion in rice strain
H0388, genomic survey sequence
Length = 222
Score = 46.1 bits (23), Expect = 0.027
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggtactcg 23
|||||||||||||||||||||||
Sbjct: 214 gcggccgcccgggcaggtactcg 192
>gb|CB671521.1|CB671521 OSJNEe05C09.f OSJNEe Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEe05C09 5', mRNA sequence
Length = 838
Score = 46.1 bits (23), Expect = 0.027
Identities = 100/123 (81%), Gaps = 2/123 (1%)
Strand = Plus / Minus
Query: 336 agcagatttctcattttcaaagcctcctccatatagtgctcctgattcatatctatagtt 395
||||| ||||||||||| | |||||||| | ||||| |||||||||||||| || |||
Sbjct: 279 agcaggtttctcattttgagtgcctcctcaaaatagttatcctgattcatatcaatggtt 220
Query: 396 tgga-ggcattcgcctctggtgaatattattgcatggttctgattttctggctttccttc 454
|| | ||||| || | |||||||||||| ||||| || || ||||||||||| || ||
Sbjct: 219 tgcactgcatt-tccacgggtgaatattatggcatgattttggttttctggcttcccctc 161
Query: 455 acc 457
|||
Sbjct: 160 acc 158
Score = 44.1 bits (22), Expect = 0.11
Identities = 88/110 (80%)
Strand = Plus / Minus
Query: 183 ggattggcaagcactcgttgtccaattgttacgaaactagtttcctgatttgacatgaac 242
|||||||| || || || ||||| | ||| || ||||||||||||||||| ||||| |||
Sbjct: 432 ggattggccagaacacgctgtcccaatgtgacaaaactagtttcctgattggacataaac 373
Query: 243 catgcaagggatgacacactgcccgtaaatatgtgttctctgactccaag 292
| || || || || ||||| ||||| || | ||||||||| || |||||
Sbjct: 372 gaggccagcgaagaaacacttcccgtgaacacgtgttctctaacaccaag 323
>dbj|AK099782.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013095O05, full
insert sequence
Length = 5774
Score = 46.1 bits (23), Expect = 0.027
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 57 ttgaatcctgcaaatatgtcctcactgagattgat 91
||||| ||||||||||||||||| |||| ||||||
Sbjct: 4016 ttgaaacctgcaaatatgtcctcgctgatattgat 3982
Score = 44.1 bits (22), Expect = 0.11
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 414 gtgaatattattgcatggttctgattttctggctttcc 451
|||||||| || ||||||||||||||||| || |||||
Sbjct: 3659 gtgaatatgatggcatggttctgattttcaggttttcc 3622
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 926,565
Number of Sequences: 438736
Number of extensions: 926565
Number of successful extensions: 4373
Number of sequences better than 0.5: 88
Number of HSP's better than 0.5 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 3954
Number of HSP's gapped (non-prelim): 391
length of query: 755
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 734
effective length of database: 2,791,206,460
effective search space: 2048745541640
effective search space used: 2048745541640
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)