BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QCF4h05.yg.2.1
(697 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CB671521.1|CB671521 OSJNEe05C09.f OSJNEe Oryza sativa (j... 543 e-152
dbj|AK069531.1| Oryza sativa (japonica cultivar-group) cDNA... 543 e-152
ref|NM_187562.1| Oryza sativa (japonica cultivar-group), p... 543 e-152
gb|CF307470.1|CF307470 HDA1--06-M20.g1 OsHDAC1-overexpressi... 371 e-100
gb|AC118980.2| Oryza sativa (japonica cultivar-group) chrom... 174 4e-041
gb|AACV01005773.1| Oryza sativa (japonica cultivar-group) c... 174 4e-041
ref|NT_107183.1| Oryza sativa (japonica cultivar-group) 174 4e-041
gb|CH401173.1| Oryza sativa (japonica cultivar-group) chrom... 174 4e-041
gb|CM000140.1| Oryza sativa (japonica cultivar-group) chrom... 174 4e-041
dbj|AP008209.1| Oryza sativa (japonica cultivar-group) geno... 174 4e-041
gb|DP000009.1| Oryza sativa (japonica cultivar-group) chrom... 174 4e-041
ref|XM_550490.1| Oryza sativa (japonica cultivar-group), mRNA 151 6e-034
gb|CZ555992.1|CZ555992 M0029556 AS_TRIM_TDNA_B1 Oryza sativ... 78 7e-012
gb|AACV01012882.1| Oryza sativa (japonica cultivar-group) c... 62 4e-007
dbj|AP001552.1| Oryza sativa (japonica cultivar-group) gene... 62 4e-007
dbj|AP001389.1| Oryza sativa (japonica cultivar-group) geno... 62 4e-007
ref|NT_107230.2| Oryza sativa (japonica cultivar-group) 62 4e-007
gb|CH401209.1| Oryza sativa (japonica cultivar-group) chrom... 62 4e-007
gb|CM000143.1| Oryza sativa (japonica cultivar-group) chrom... 62 4e-007
dbj|AP008212.1| Oryza sativa (japonica cultivar-group) geno... 62 4e-007
ref|NT_107235.1| Oryza sativa (japonica cultivar-group) 58 7e-006
dbj|AP004685.3| Oryza sativa (japonica cultivar-group) geno... 58 7e-006
dbj|AP005750.3| Oryza sativa (japonica cultivar-group) geno... 58 7e-006
gb|AACV01014975.1| Oryza sativa (japonica cultivar-group) c... 58 7e-006
gb|CH401216.1| Oryza sativa (japonica cultivar-group) chrom... 58 7e-006
gb|AY324384.1| Oryza sativa (japonica cultivar-group) callo... 56 3e-005
ref|XM_468556.1| Oryza sativa (japonica cultivar-group), mRNA 56 3e-005
dbj|AK100271.1| Oryza sativa (japonica cultivar-group) cDNA... 52 4e-004
gb|AQ272832.1|AQ272832 nbxb0028B24r CUGI Rice BAC Library O... 50 0.002
gb|AQ687725.1|AQ687725 nbxb0075F07f CUGI Rice BAC Library O... 50 0.002
gb|AQ840847.1|AQ840847 nbxb0071P12r CUGI Rice BAC Library O... 50 0.002
dbj|AG208568.1| Oryza sativa (japonica cultivar-group) DNA,... 50 0.002
dbj|AG208570.1| Oryza sativa (japonica cultivar-group) DNA,... 50 0.002
dbj|AG210242.1| Oryza sativa (japonica cultivar-group) DNA,... 50 0.002
dbj|AG211136.1| Oryza sativa (japonica cultivar-group) DNA,... 50 0.002
dbj|AG020899.1| Oryza sativa (japonica cultivar-group) DNA,... 50 0.002
dbj|AP003454.1| Oryza sativa (japonica cultivar-group) chro... 50 0.002
dbj|AP005614.2| Oryza sativa (japonica cultivar-group) geno... 50 0.002
gb|AACV01003740.1| Oryza sativa (japonica cultivar-group) c... 50 0.002
gb|AACV01013162.1| Oryza sativa (japonica cultivar-group) c... 50 0.002
ref|NM_193211.1| Oryza sativa (japonica cultivar-group), p... 50 0.002
dbj|AP007226.1| Oryza sativa (japonica cultivar-group) geno... 50 0.002
dbj|AP007257.2| Oryza sativa (japonica cultivar-group) geno... 50 0.002
ref|NT_107178.1| Oryza sativa (japonica cultivar-group) 50 0.002
gb|CH401169.1| Oryza sativa (japonica cultivar-group) chrom... 50 0.002
gb|CM000139.1| Oryza sativa (japonica cultivar-group) chrom... 50 0.002
dbj|AP008208.1| Oryza sativa (japonica cultivar-group) geno... 50 0.002
dbj|AG206877.1| Oryza sativa (japonica cultivar-group) DNA,... 48 0.006
dbj|AP004082.3| Oryza sativa (japonica cultivar-group) geno... 46 0.025
dbj|AP005290.2| Oryza sativa (japonica cultivar-group) geno... 46 0.025
gb|AACV01005686.1| Oryza sativa (japonica cultivar-group) c... 46 0.025
ref|NT_107182.1| Oryza sativa (japonica cultivar-group) 46 0.025
gb|CH401170.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.025
gb|AACV01001413.1| Oryza sativa (japonica cultivar-group) c... 44 0.100
gb|AACV01002091.1| Oryza sativa (japonica cultivar-group) c... 44 0.100
dbj|BA000010.8| Oryza sativa (japonica cultivar-group) geno... 44 0.100
ref|NM_191973.1| Oryza sativa (japonica cultivar-group), p... 44 0.100
ref|NT_079926.2| Oryza sativa (japonica cultivar-group) 44 0.100
ref|NT_079927.2| Oryza sativa (japonica cultivar-group) 44 0.100
dbj|AP003223.3| Oryza sativa (japonica cultivar-group) geno... 44 0.100
dbj|AP003264.3| Oryza sativa (japonica cultivar-group) geno... 44 0.100
dbj|AP003447.2| Oryza sativa (japonica cultivar-group) geno... 44 0.100
dbj|AP003445.2| Oryza sativa (japonica cultivar-group) geno... 44 0.100
gb|CH401168.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.100
gb|CH401166.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.100
gb|CM000138.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.100
dbj|AP008207.1| Oryza sativa (japonica cultivar-group) geno... 44 0.100
gb|CB659583.1|CB659583 OSJNEc16L01.f OSJNEc Oryza sativa (j... 42 0.39
dbj|AK099782.1| Oryza sativa (japonica cultivar-group) cDNA... 42 0.39
dbj|AK120195.1| Oryza sativa (japonica cultivar-group) cDNA... 42 0.39
dbj|AK120402.1| Oryza sativa (japonica cultivar-group) cDNA... 42 0.39
gb|AACV01002367.1| Oryza sativa (japonica cultivar-group) c... 42 0.39
ref|NM_191270.1| Oryza sativa (japonica cultivar-group), p... 42 0.39
dbj|AP003249.3| Oryza sativa (japonica cultivar-group) geno... 42 0.39
dbj|AP003268.4| Oryza sativa (japonica cultivar-group) geno... 42 0.39
>gb|CB671521.1|CB671521 OSJNEe05C09.f OSJNEe Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEe05C09 5', mRNA sequence
Length = 838
Score = 543 bits (274), Expect = e-152
Identities = 480/551 (87%)
Strand = Plus / Minus
Query: 23 cagaagtagaatccaacagttgtcacgtagaaggataacatcctgaaaaagtcaaaaagt 82
||||||||||| |||| ||||||||| |||||||| |||||||||||||||||||||||
Sbjct: 774 cagaagtagaacccaatagttgtcacatagaaggacaacatcctgaaaaagtcaaaaagc 715
Query: 83 tgtccgagtctatatatgtctcggctaagaacttgttcaccatttccaccagcaactttt 142
||||| ||||| ||||| || ||||| || ||||| ||||||||||| ||||||||||||
Sbjct: 714 tgtccaagtctgtatatatcccggctgagcacttgctcaccatttcctccagcaactttt 655
Query: 143 ccttcaaatagtgcaatctgattaagtccaacatccctacctttgccaacctgaatatat 202
||||| || ||||||||||||||||| ||||| || || || || |||||||||||||||
Sbjct: 654 ccttcgaacagtgcaatctgattaagaccaacgtctcttccctttccaacctgaatatat 595
Query: 203 tcatgatgagttatgcatccttgacgcagagttgagttgaatcctgcatatatatcctca 262
||||||||||||||| ||| ||||||||||||||||| |||||||| |||||||||
Sbjct: 594 tcatgatgagttatgttccctaagcgcagagttgagttgaaccctgcataaatatcctca 535
Query: 263 ctgatattgatgctgcgagaggccttactaattccaccccttgttatatgaaaaattcta 322
|||||||||||| || ||||||||||| ||||||||||| ||||||||||||||||||
Sbjct: 534 ctgatattgatgacacgggaggccttacttattccacccctcgttatatgaaaaattcta 475
Query: 323 tcaaaaacatctggatgaccatagtgcattctcactttcagcgggttagcaagaacacgc 382
||||||||||||||||| ||||| |||||||| |||||||| || || || |||||||||
Sbjct: 474 tcaaaaacatctggatggccataatgcattcttactttcagtggattggccagaacacgc 415
Query: 383 tgtcctaatgtcacaaaacttgtctcctgattagacataaatgaggccagggaggaaaca 442
||||| ||||| |||||||| || |||||||| |||||||| |||||||| || ||||||
Sbjct: 414 tgtcccaatgtgacaaaactagtttcctgattggacataaacgaggccagcgaagaaaca 355
Query: 443 cttcccgtgaagacatgctccctaacaccaagaatagaagggtaatgcttgccacgcttc 502
||||||||||| || || || |||||||||||||| ||||| | ||||||||| | |||
Sbjct: 354 cttcccgtgaacacgtgttctctaacaccaagaattgaaggcttgtgcttgccatgattc 295
Query: 503 agagagaactcctcaagcaggtttctcattttaagtgcctnctcnnnntagnnatcctga 562
|| |||| ||||||||||||||||||||||| ||||||| ||| ||| |||||||
Sbjct: 294 tgatagaattcctcaagcaggtttctcattttgagtgcctcctcaaaatagttatcctga 235
Query: 563 ttcatatcaat 573
|||||||||||
Sbjct: 234 ttcatatcaat 224
>dbj|AK069531.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023020O14, full
insert sequence
Length = 2087
Score = 543 bits (274), Expect = e-152
Identities = 480/551 (87%)
Strand = Plus / Minus
Query: 23 cagaagtagaatccaacagttgtcacgtagaaggataacatcctgaaaaagtcaaaaagt 82
||||||||||| |||| ||||||||| |||||||| |||||||||||||||||||||||
Sbjct: 563 cagaagtagaacccaatagttgtcacatagaaggacaacatcctgaaaaagtcaaaaagc 504
Query: 83 tgtccgagtctatatatgtctcggctaagaacttgttcaccatttccaccagcaactttt 142
||||| ||||| ||||| || ||||| || ||||| ||||||||||| ||||||||||||
Sbjct: 503 tgtccaagtctgtatatatcccggctgagcacttgctcaccatttcctccagcaactttt 444
Query: 143 ccttcaaatagtgcaatctgattaagtccaacatccctacctttgccaacctgaatatat 202
||||| || ||||||||||||||||| ||||| || || || || |||||||||||||||
Sbjct: 443 ccttcgaacagtgcaatctgattaagaccaacgtctcttccctttccaacctgaatatat 384
Query: 203 tcatgatgagttatgcatccttgacgcagagttgagttgaatcctgcatatatatcctca 262
||||||||||||||| ||| ||||||||||||||||| |||||||| |||||||||
Sbjct: 383 tcatgatgagttatgttccctaagcgcagagttgagttgaaccctgcataaatatcctca 324
Query: 263 ctgatattgatgctgcgagaggccttactaattccaccccttgttatatgaaaaattcta 322
|||||||||||| || ||||||||||| ||||||||||| ||||||||||||||||||
Sbjct: 323 ctgatattgatgacacgggaggccttacttattccacccctcgttatatgaaaaattcta 264
Query: 323 tcaaaaacatctggatgaccatagtgcattctcactttcagcgggttagcaagaacacgc 382
||||||||||||||||| ||||| |||||||| |||||||| || || || |||||||||
Sbjct: 263 tcaaaaacatctggatggccataatgcattcttactttcagtggattggccagaacacgc 204
Query: 383 tgtcctaatgtcacaaaacttgtctcctgattagacataaatgaggccagggaggaaaca 442
||||| ||||| |||||||| || |||||||| |||||||| |||||||| || ||||||
Sbjct: 203 tgtcccaatgtgacaaaactagtttcctgattggacataaacgaggccagcgaagaaaca 144
Query: 443 cttcccgtgaagacatgctccctaacaccaagaatagaagggtaatgcttgccacgcttc 502
||||||||||| || || || |||||||||||||| ||||| | ||||||||| | |||
Sbjct: 143 cttcccgtgaacacgtgttctctaacaccaagaattgaaggcttgtgcttgccatgattc 84
Query: 503 agagagaactcctcaagcaggtttctcattttaagtgcctnctcnnnntagnnatcctga 562
|| |||| ||||||||||||||||||||||| ||||||| ||| ||| |||||||
Sbjct: 83 tgatagaattcctcaagcaggtttctcattttgagtgcctcctcaaaatagttatcctga 24
Query: 563 ttcatatcaat 573
|||||||||||
Sbjct: 23 ttcatatcaat 13
>ref|NM_187562.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 6168
Score = 543 bits (274), Expect = e-152
Identities = 480/551 (87%)
Strand = Plus / Minus
Query: 23 cagaagtagaatccaacagttgtcacgtagaaggataacatcctgaaaaagtcaaaaagt 82
||||||||||| |||| ||||||||| |||||||| |||||||||||||||||||||||
Sbjct: 3593 cagaagtagaacccaatagttgtcacatagaaggacaacatcctgaaaaagtcaaaaagc 3534
Query: 83 tgtccgagtctatatatgtctcggctaagaacttgttcaccatttccaccagcaactttt 142
||||| ||||| ||||| || ||||| || ||||| ||||||||||| ||||||||||||
Sbjct: 3533 tgtccaagtctgtatatatcccggctgagcacttgctcaccatttcctccagcaactttt 3474
Query: 143 ccttcaaatagtgcaatctgattaagtccaacatccctacctttgccaacctgaatatat 202
||||| || ||||||||||||||||| ||||| || || || || |||||||||||||||
Sbjct: 3473 ccttcgaacagtgcaatctgattaagaccaacgtctcttccctttccaacctgaatatat 3414
Query: 203 tcatgatgagttatgcatccttgacgcagagttgagttgaatcctgcatatatatcctca 262
||||||||||||||| ||| ||||||||||||||||| |||||||| |||||||||
Sbjct: 3413 tcatgatgagttatgttccctaagcgcagagttgagttgaaccctgcataaatatcctca 3354
Query: 263 ctgatattgatgctgcgagaggccttactaattccaccccttgttatatgaaaaattcta 322
|||||||||||| || ||||||||||| ||||||||||| ||||||||||||||||||
Sbjct: 3353 ctgatattgatgacacgggaggccttacttattccacccctcgttatatgaaaaattcta 3294
Query: 323 tcaaaaacatctggatgaccatagtgcattctcactttcagcgggttagcaagaacacgc 382
||||||||||||||||| ||||| |||||||| |||||||| || || || |||||||||
Sbjct: 3293 tcaaaaacatctggatggccataatgcattcttactttcagtggattggccagaacacgc 3234
Query: 383 tgtcctaatgtcacaaaacttgtctcctgattagacataaatgaggccagggaggaaaca 442
||||| ||||| |||||||| || |||||||| |||||||| |||||||| || ||||||
Sbjct: 3233 tgtcccaatgtgacaaaactagtttcctgattggacataaacgaggccagcgaagaaaca 3174
Query: 443 cttcccgtgaagacatgctccctaacaccaagaatagaagggtaatgcttgccacgcttc 502
||||||||||| || || || |||||||||||||| ||||| | ||||||||| | |||
Sbjct: 3173 cttcccgtgaacacgtgttctctaacaccaagaattgaaggcttgtgcttgccatgattc 3114
Query: 503 agagagaactcctcaagcaggtttctcattttaagtgcctnctcnnnntagnnatcctga 562
|| |||| ||||||||||||||||||||||| ||||||| ||| ||| |||||||
Sbjct: 3113 tgatagaattcctcaagcaggtttctcattttgagtgcctcctcaaaatagttatcctga 3054
Query: 563 ttcatatcaat 573
|||||||||||
Sbjct: 3053 ttcatatcaat 3043
>gb|CF307470.1|CF307470 HDA1--06-M20.g1 OsHDAC1-overexpressing transgenic rice lambda phage
cDNA library I (HDA1) Oryza sativa (japonica
cultivar-group) cDNA clone HDA1--06-M20, mRNA sequence
Length = 542
Score = 371 bits (187), Expect = e-100
Identities = 337/387 (87%), Gaps = 2/387 (0%)
Strand = Plus / Minus
Query: 188 ccaacctgaatatattcatgatgagttatgcatccttga-cgcagagttgagttgaatcc 246
|||||||||||||||||||||||||||||| ||| | | ||||||||||||||||| ||
Sbjct: 537 ccaacctgaatatattcatgatgagttatgt-tccntaagcgcagagttgagttgaaccc 479
Query: 247 tgcatatatatcctcactgatattgatgctgcgagaggccttactaattccaccccttgt 306
|||||| ||||||||||||||||||||| || ||||||||||| ||||||||||| ||
Sbjct: 478 tgcataaatatcctcactgatattgatgacacgggaggccttacttattccacccctcgt 419
Query: 307 tatatgaaaaattctatcaaaaacatctggatgaccatagtgcattctcactttcagcgg 366
||||||||||||||||||||||||||||||||| ||||| |||||||| |||||||| ||
Sbjct: 418 tatatgaaaaattctatcaaaaacatctggatggccataatgcattcttactttcagtgg 359
Query: 367 gttagcaagaacacgctgtcctaatgtcacaaaacttgtctcctgattagacataaatga 426
|| || |||||||||||||| ||||| |||||||| || |||||||| |||||||| ||
Sbjct: 358 attggccagaacacgctgtcccaatgtgacaaaactagtttcctgattggacataaacga 299
Query: 427 ggccagggaggaaacacttcccgtgaagacatgctccctaacaccaagaatagaagggta 486
|||||| || ||||||||||||||||| || || || |||||||||||||| ||||| |
Sbjct: 298 ggccagcgaagaaacacttcccgtgaacacgtgttctctaacaccaagaattgaaggctt 239
Query: 487 atgcttgccacgcttcagagagaactcctcaagcaggtttctcattttaagtgcctnctc 546
||||||||| | ||| || |||| ||||||||||||||||||||| | ||||||| |||
Sbjct: 238 gtgcttgccatgattctgatagaattcctcaagcaggtttctcattatgagtgcctcctc 179
Query: 547 nnnntagnnatcctgattcatatcaat 573
||| ||||||||||||||||||
Sbjct: 178 aaaatagttatcctgattcatatcaat 152
>gb|AC118980.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1263H11,
complete sequence
Length = 126827
Score = 174 bits (88), Expect = 4e-041
Identities = 136/152 (89%)
Strand = Plus / Minus
Query: 23 cagaagtagaatccaacagttgtcacgtagaaggataacatcctgaaaaagtcaaaaagt 82
||||||||||| |||| ||||||||| |||||||| |||||||||||||||||||||||
Sbjct: 69846 cagaagtagaacccaatagttgtcacatagaaggacaacatcctgaaaaagtcaaaaagc 69787
Query: 83 tgtccgagtctatatatgtctcggctaagaacttgttcaccatttccaccagcaactttt 142
||||| ||||| ||||| || ||||| || ||||| ||||||||||| ||||||||||||
Sbjct: 69786 tgtccaagtctgtatatatcccggctgagcacttgctcaccatttcctccagcaactttt 69727
Query: 143 ccttcaaatagtgcaatctgattaagtccaac 174
||||| || ||||||||||||||||| |||||
Sbjct: 69726 ccttcgaacagtgcaatctgattaagaccaac 69695
Score = 147 bits (74), Expect = 9e-033
Identities = 101/110 (91%)
Strand = Plus / Minus
Query: 245 cctgcatatatatcctcactgatattgatgctgcgagaggccttactaattccacccctt 304
|||||||| ||||||||||||||||||||| || ||||||||||| |||||||||||
Sbjct: 68212 cctgcataaatatcctcactgatattgatgacacgggaggccttacttattccacccctc 68153
Query: 305 gttatatgaaaaattctatcaaaaacatctggatgaccatagtgcattct 354
||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct: 68152 gttatatgaaaaattctatcaaaaacatctggatggccataatgcattct 68103
Score = 89.7 bits (45), Expect = 2e-015
Identities = 89/104 (85%)
Strand = Plus / Minus
Query: 443 cttcccgtgaagacatgctccctaacaccaagaatagaagggtaatgcttgccacgcttc 502
||||||||||| || || || |||||||||||||| ||||| | ||||||||| | |||
Sbjct: 67839 cttcccgtgaacacgtgttctctaacaccaagaattgaaggcttgtgcttgccatgattc 67780
Query: 503 agagagaactcctcaagcaggtttctcattttaagtgcctnctc 546
|| |||| ||||||||||||||||||||||| ||||||| |||
Sbjct: 67779 tgatagaattcctcaagcaggtttctcattttgagtgcctcctc 67736
Score = 77.8 bits (39), Expect = 7e-012
Identities = 63/71 (88%)
Strand = Plus / Minus
Query: 374 agaacacgctgtcctaatgtcacaaaacttgtctcctgattagacataaatgaggccagg 433
|||||||||||||| ||||| |||||||| || |||||||| |||||||| ||||||||
Sbjct: 67999 agaacacgctgtcccaatgtgacaaaactagtttcctgattggacataaacgaggccagc 67940
Query: 434 gaggaaacact 444
|| ||||||||
Sbjct: 67939 gaagaaacact 67929
Score = 60.0 bits (30), Expect = 2e-006
Identities = 51/58 (87%)
Strand = Plus / Minus
Query: 191 acctgaatatattcatgatgagttatgcatccttgacgcagagttgagttgaatcctg 248
||||||||||||||||||||||||||| ||| ||||||||||||||||| ||||
Sbjct: 68816 acctgaatatattcatgatgagttatgttccctaagcgcagagttgagttgaaccctg 68759
>gb|AACV01005773.1| Oryza sativa (japonica cultivar-group) chromosome 3 Ctg005773, whole
genome shotgun sequence
Length = 82514
Score = 174 bits (88), Expect = 4e-041
Identities = 136/152 (89%)
Strand = Plus / Minus
Query: 23 cagaagtagaatccaacagttgtcacgtagaaggataacatcctgaaaaagtcaaaaagt 82
||||||||||| |||| ||||||||| |||||||| |||||||||||||||||||||||
Sbjct: 21873 cagaagtagaacccaatagttgtcacatagaaggacaacatcctgaaaaagtcaaaaagc 21814
Query: 83 tgtccgagtctatatatgtctcggctaagaacttgttcaccatttccaccagcaactttt 142
||||| ||||| ||||| || ||||| || ||||| ||||||||||| ||||||||||||
Sbjct: 21813 tgtccaagtctgtatatatcccggctgagcacttgctcaccatttcctccagcaactttt 21754
Query: 143 ccttcaaatagtgcaatctgattaagtccaac 174
||||| || ||||||||||||||||| |||||
Sbjct: 21753 ccttcgaacagtgcaatctgattaagaccaac 21722
Score = 147 bits (74), Expect = 9e-033
Identities = 101/110 (91%)
Strand = Plus / Minus
Query: 245 cctgcatatatatcctcactgatattgatgctgcgagaggccttactaattccacccctt 304
|||||||| ||||||||||||||||||||| || ||||||||||| |||||||||||
Sbjct: 20239 cctgcataaatatcctcactgatattgatgacacgggaggccttacttattccacccctc 20180
Query: 305 gttatatgaaaaattctatcaaaaacatctggatgaccatagtgcattct 354
||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct: 20179 gttatatgaaaaattctatcaaaaacatctggatggccataatgcattct 20130
Score = 89.7 bits (45), Expect = 2e-015
Identities = 89/104 (85%)
Strand = Plus / Minus
Query: 443 cttcccgtgaagacatgctccctaacaccaagaatagaagggtaatgcttgccacgcttc 502
||||||||||| || || || |||||||||||||| ||||| | ||||||||| | |||
Sbjct: 19866 cttcccgtgaacacgtgttctctaacaccaagaattgaaggcttgtgcttgccatgattc 19807
Query: 503 agagagaactcctcaagcaggtttctcattttaagtgcctnctc 546
|| |||| ||||||||||||||||||||||| ||||||| |||
Sbjct: 19806 tgatagaattcctcaagcaggtttctcattttgagtgcctcctc 19763
Score = 77.8 bits (39), Expect = 7e-012
Identities = 63/71 (88%)
Strand = Plus / Minus
Query: 374 agaacacgctgtcctaatgtcacaaaacttgtctcctgattagacataaatgaggccagg 433
|||||||||||||| ||||| |||||||| || |||||||| |||||||| ||||||||
Sbjct: 20026 agaacacgctgtcccaatgtgacaaaactagtttcctgattggacataaacgaggccagc 19967
Query: 434 gaggaaacact 444
|| ||||||||
Sbjct: 19966 gaagaaacact 19956
Score = 60.0 bits (30), Expect = 2e-006
Identities = 51/58 (87%)
Strand = Plus / Minus
Query: 191 acctgaatatattcatgatgagttatgcatccttgacgcagagttgagttgaatcctg 248
||||||||||||||||||||||||||| ||| ||||||||||||||||| ||||
Sbjct: 20843 acctgaatatattcatgatgagttatgttccctaagcgcagagttgagttgaaccctg 20786
>ref|NT_107183.1| Oryza sativa (japonica cultivar-group)
Length = 1680144
Score = 174 bits (88), Expect = 4e-041
Identities = 136/152 (89%)
Strand = Plus / Minus
Query: 23 cagaagtagaatccaacagttgtcacgtagaaggataacatcctgaaaaagtcaaaaagt 82
||||||||||| |||| ||||||||| |||||||| |||||||||||||||||||||||
Sbjct: 1049629 cagaagtagaacccaatagttgtcacatagaaggacaacatcctgaaaaagtcaaaaagc 1049570
Query: 83 tgtccgagtctatatatgtctcggctaagaacttgttcaccatttccaccagcaactttt 142
||||| ||||| ||||| || ||||| || ||||| ||||||||||| ||||||||||||
Sbjct: 1049569 tgtccaagtctgtatatatcccggctgagcacttgctcaccatttcctccagcaactttt 1049510
Query: 143 ccttcaaatagtgcaatctgattaagtccaac 174
||||| || ||||||||||||||||| |||||
Sbjct: 1049509 ccttcgaacagtgcaatctgattaagaccaac 1049478
Score = 147 bits (74), Expect = 9e-033
Identities = 101/110 (91%)
Strand = Plus / Minus
Query: 245 cctgcatatatatcctcactgatattgatgctgcgagaggccttactaattccacccctt 304
|||||||| ||||||||||||||||||||| || ||||||||||| |||||||||||
Sbjct: 1047995 cctgcataaatatcctcactgatattgatgacacgggaggccttacttattccacccctc 1047936
Query: 305 gttatatgaaaaattctatcaaaaacatctggatgaccatagtgcattct 354
||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct: 1047935 gttatatgaaaaattctatcaaaaacatctggatggccataatgcattct 1047886
Score = 89.7 bits (45), Expect = 2e-015
Identities = 89/104 (85%)
Strand = Plus / Minus
Query: 443 cttcccgtgaagacatgctccctaacaccaagaatagaagggtaatgcttgccacgcttc 502
||||||||||| || || || |||||||||||||| ||||| | ||||||||| | |||
Sbjct: 1047622 cttcccgtgaacacgtgttctctaacaccaagaattgaaggcttgtgcttgccatgattc 1047563
Query: 503 agagagaactcctcaagcaggtttctcattttaagtgcctnctc 546
|| |||| ||||||||||||||||||||||| ||||||| |||
Sbjct: 1047562 tgatagaattcctcaagcaggtttctcattttgagtgcctcctc 1047519
Score = 77.8 bits (39), Expect = 7e-012
Identities = 63/71 (88%)
Strand = Plus / Minus
Query: 374 agaacacgctgtcctaatgtcacaaaacttgtctcctgattagacataaatgaggccagg 433
|||||||||||||| ||||| |||||||| || |||||||| |||||||| ||||||||
Sbjct: 1047782 agaacacgctgtcccaatgtgacaaaactagtttcctgattggacataaacgaggccagc 1047723
Query: 434 gaggaaacact 444
|| ||||||||
Sbjct: 1047722 gaagaaacact 1047712
Score = 60.0 bits (30), Expect = 2e-006
Identities = 51/58 (87%)
Strand = Plus / Minus
Query: 191 acctgaatatattcatgatgagttatgcatccttgacgcagagttgagttgaatcctg 248
||||||||||||||||||||||||||| ||| ||||||||||||||||| ||||
Sbjct: 1048599 acctgaatatattcatgatgagttatgttccctaagcgcagagttgagttgaaccctg 1048542
>gb|CH401173.1| Oryza sativa (japonica cultivar-group) chromosome 3 scaffold000010 genomic
scaffold, whole genome shotgun sequence
Length = 13858245
Score = 174 bits (88), Expect = 4e-041
Identities = 136/152 (89%)
Strand = Plus / Minus
Query: 23 cagaagtagaatccaacagttgtcacgtagaaggataacatcctgaaaaagtcaaaaagt 82
||||||||||| |||| ||||||||| |||||||| |||||||||||||||||||||||
Sbjct: 1047808 cagaagtagaacccaatagttgtcacatagaaggacaacatcctgaaaaagtcaaaaagc 1047749
Query: 83 tgtccgagtctatatatgtctcggctaagaacttgttcaccatttccaccagcaactttt 142
||||| ||||| ||||| || ||||| || ||||| ||||||||||| ||||||||||||
Sbjct: 1047748 tgtccaagtctgtatatatcccggctgagcacttgctcaccatttcctccagcaactttt 1047689
Query: 143 ccttcaaatagtgcaatctgattaagtccaac 174
||||| || ||||||||||||||||| |||||
Sbjct: 1047688 ccttcgaacagtgcaatctgattaagaccaac 1047657
Score = 147 bits (74), Expect = 9e-033
Identities = 101/110 (91%)
Strand = Plus / Minus
Query: 245 cctgcatatatatcctcactgatattgatgctgcgagaggccttactaattccacccctt 304
|||||||| ||||||||||||||||||||| || ||||||||||| |||||||||||
Sbjct: 1046174 cctgcataaatatcctcactgatattgatgacacgggaggccttacttattccacccctc 1046115
Query: 305 gttatatgaaaaattctatcaaaaacatctggatgaccatagtgcattct 354
||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct: 1046114 gttatatgaaaaattctatcaaaaacatctggatggccataatgcattct 1046065
Score = 89.7 bits (45), Expect = 2e-015
Identities = 89/104 (85%)
Strand = Plus / Minus
Query: 443 cttcccgtgaagacatgctccctaacaccaagaatagaagggtaatgcttgccacgcttc 502
||||||||||| || || || |||||||||||||| ||||| | ||||||||| | |||
Sbjct: 1045801 cttcccgtgaacacgtgttctctaacaccaagaattgaaggcttgtgcttgccatgattc 1045742
Query: 503 agagagaactcctcaagcaggtttctcattttaagtgcctnctc 546
|| |||| ||||||||||||||||||||||| ||||||| |||
Sbjct: 1045741 tgatagaattcctcaagcaggtttctcattttgagtgcctcctc 1045698
Score = 77.8 bits (39), Expect = 7e-012
Identities = 63/71 (88%)
Strand = Plus / Minus
Query: 374 agaacacgctgtcctaatgtcacaaaacttgtctcctgattagacataaatgaggccagg 433
|||||||||||||| ||||| |||||||| || |||||||| |||||||| ||||||||
Sbjct: 1045961 agaacacgctgtcccaatgtgacaaaactagtttcctgattggacataaacgaggccagc 1045902
Query: 434 gaggaaacact 444
|| ||||||||
Sbjct: 1045901 gaagaaacact 1045891
Score = 60.0 bits (30), Expect = 2e-006
Identities = 51/58 (87%)
Strand = Plus / Minus
Query: 191 acctgaatatattcatgatgagttatgcatccttgacgcagagttgagttgaatcctg 248
||||||||||||||||||||||||||| ||| ||||||||||||||||| ||||
Sbjct: 1046778 acctgaatatattcatgatgagttatgttccctaagcgcagagttgagttgaaccctg 1046721
>gb|CM000140.1| Oryza sativa (japonica cultivar-group) chromosome 3, whole genome shotgun
sequence
Length = 37803064
Score = 174 bits (88), Expect = 4e-041
Identities = 136/152 (89%)
Strand = Plus / Minus
Query: 23 cagaagtagaatccaacagttgtcacgtagaaggataacatcctgaaaaagtcaaaaagt 82
||||||||||| |||| ||||||||| |||||||| |||||||||||||||||||||||
Sbjct: 1240170 cagaagtagaacccaatagttgtcacatagaaggacaacatcctgaaaaagtcaaaaagc 1240111
Query: 83 tgtccgagtctatatatgtctcggctaagaacttgttcaccatttccaccagcaactttt 142
||||| ||||| ||||| || ||||| || ||||| ||||||||||| ||||||||||||
Sbjct: 1240110 tgtccaagtctgtatatatcccggctgagcacttgctcaccatttcctccagcaactttt 1240051
Query: 143 ccttcaaatagtgcaatctgattaagtccaac 174
||||| || ||||||||||||||||| |||||
Sbjct: 1240050 ccttcgaacagtgcaatctgattaagaccaac 1240019
Score = 147 bits (74), Expect = 9e-033
Identities = 101/110 (91%)
Strand = Plus / Minus
Query: 245 cctgcatatatatcctcactgatattgatgctgcgagaggccttactaattccacccctt 304
|||||||| ||||||||||||||||||||| || ||||||||||| |||||||||||
Sbjct: 1238536 cctgcataaatatcctcactgatattgatgacacgggaggccttacttattccacccctc 1238477
Query: 305 gttatatgaaaaattctatcaaaaacatctggatgaccatagtgcattct 354
||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct: 1238476 gttatatgaaaaattctatcaaaaacatctggatggccataatgcattct 1238427
Score = 89.7 bits (45), Expect = 2e-015
Identities = 89/104 (85%)
Strand = Plus / Minus
Query: 443 cttcccgtgaagacatgctccctaacaccaagaatagaagggtaatgcttgccacgcttc 502
||||||||||| || || || |||||||||||||| ||||| | ||||||||| | |||
Sbjct: 1238163 cttcccgtgaacacgtgttctctaacaccaagaattgaaggcttgtgcttgccatgattc 1238104
Query: 503 agagagaactcctcaagcaggtttctcattttaagtgcctnctc 546
|| |||| ||||||||||||||||||||||| ||||||| |||
Sbjct: 1238103 tgatagaattcctcaagcaggtttctcattttgagtgcctcctc 1238060
Score = 77.8 bits (39), Expect = 7e-012
Identities = 63/71 (88%)
Strand = Plus / Minus
Query: 374 agaacacgctgtcctaatgtcacaaaacttgtctcctgattagacataaatgaggccagg 433
|||||||||||||| ||||| |||||||| || |||||||| |||||||| ||||||||
Sbjct: 1238323 agaacacgctgtcccaatgtgacaaaactagtttcctgattggacataaacgaggccagc 1238264
Query: 434 gaggaaacact 444
|| ||||||||
Sbjct: 1238263 gaagaaacact 1238253
Score = 60.0 bits (30), Expect = 2e-006
Identities = 51/58 (87%)
Strand = Plus / Minus
Query: 191 acctgaatatattcatgatgagttatgcatccttgacgcagagttgagttgaatcctg 248
||||||||||||||||||||||||||| ||| ||||||||||||||||| ||||
Sbjct: 1239140 acctgaatatattcatgatgagttatgttccctaagcgcagagttgagttgaaccctg 1239083
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
sequence
Length = 36192742
Score = 174 bits (88), Expect = 4e-041
Identities = 136/152 (89%)
Strand = Plus / Minus
Query: 23 cagaagtagaatccaacagttgtcacgtagaaggataacatcctgaaaaagtcaaaaagt 82
||||||||||| |||| ||||||||| |||||||| |||||||||||||||||||||||
Sbjct: 1049629 cagaagtagaacccaatagttgtcacatagaaggacaacatcctgaaaaagtcaaaaagc 1049570
Query: 83 tgtccgagtctatatatgtctcggctaagaacttgttcaccatttccaccagcaactttt 142
||||| ||||| ||||| || ||||| || ||||| ||||||||||| ||||||||||||
Sbjct: 1049569 tgtccaagtctgtatatatcccggctgagcacttgctcaccatttcctccagcaactttt 1049510
Query: 143 ccttcaaatagtgcaatctgattaagtccaac 174
||||| || ||||||||||||||||| |||||
Sbjct: 1049509 ccttcgaacagtgcaatctgattaagaccaac 1049478
Score = 147 bits (74), Expect = 9e-033
Identities = 101/110 (91%)
Strand = Plus / Minus
Query: 245 cctgcatatatatcctcactgatattgatgctgcgagaggccttactaattccacccctt 304
|||||||| ||||||||||||||||||||| || ||||||||||| |||||||||||
Sbjct: 1047995 cctgcataaatatcctcactgatattgatgacacgggaggccttacttattccacccctc 1047936
Query: 305 gttatatgaaaaattctatcaaaaacatctggatgaccatagtgcattct 354
||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct: 1047935 gttatatgaaaaattctatcaaaaacatctggatggccataatgcattct 1047886
Score = 89.7 bits (45), Expect = 2e-015
Identities = 89/104 (85%)
Strand = Plus / Minus
Query: 443 cttcccgtgaagacatgctccctaacaccaagaatagaagggtaatgcttgccacgcttc 502
||||||||||| || || || |||||||||||||| ||||| | ||||||||| | |||
Sbjct: 1047622 cttcccgtgaacacgtgttctctaacaccaagaattgaaggcttgtgcttgccatgattc 1047563
Query: 503 agagagaactcctcaagcaggtttctcattttaagtgcctnctc 546
|| |||| ||||||||||||||||||||||| ||||||| |||
Sbjct: 1047562 tgatagaattcctcaagcaggtttctcattttgagtgcctcctc 1047519
Score = 77.8 bits (39), Expect = 7e-012
Identities = 63/71 (88%)
Strand = Plus / Minus
Query: 374 agaacacgctgtcctaatgtcacaaaacttgtctcctgattagacataaatgaggccagg 433
|||||||||||||| ||||| |||||||| || |||||||| |||||||| ||||||||
Sbjct: 1047782 agaacacgctgtcccaatgtgacaaaactagtttcctgattggacataaacgaggccagc 1047723
Query: 434 gaggaaacact 444
|| ||||||||
Sbjct: 1047722 gaagaaacact 1047712
Score = 60.0 bits (30), Expect = 2e-006
Identities = 51/58 (87%)
Strand = Plus / Minus
Query: 191 acctgaatatattcatgatgagttatgcatccttgacgcagagttgagttgaatcctg 248
||||||||||||||||||||||||||| ||| ||||||||||||||||| ||||
Sbjct: 1048599 acctgaatatattcatgatgagttatgttccctaagcgcagagttgagttgaaccctg 1048542
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
Length = 36102668
Score = 174 bits (88), Expect = 4e-041
Identities = 136/152 (89%)
Strand = Plus / Minus
Query: 23 cagaagtagaatccaacagttgtcacgtagaaggataacatcctgaaaaagtcaaaaagt 82
||||||||||| |||| ||||||||| |||||||| |||||||||||||||||||||||
Sbjct: 1049631 cagaagtagaacccaatagttgtcacatagaaggacaacatcctgaaaaagtcaaaaagc 1049572
Query: 83 tgtccgagtctatatatgtctcggctaagaacttgttcaccatttccaccagcaactttt 142
||||| ||||| ||||| || ||||| || ||||| ||||||||||| ||||||||||||
Sbjct: 1049571 tgtccaagtctgtatatatcccggctgagcacttgctcaccatttcctccagcaactttt 1049512
Query: 143 ccttcaaatagtgcaatctgattaagtccaac 174
||||| || ||||||||||||||||| |||||
Sbjct: 1049511 ccttcgaacagtgcaatctgattaagaccaac 1049480
Score = 147 bits (74), Expect = 9e-033
Identities = 101/110 (91%)
Strand = Plus / Minus
Query: 245 cctgcatatatatcctcactgatattgatgctgcgagaggccttactaattccacccctt 304
|||||||| ||||||||||||||||||||| || ||||||||||| |||||||||||
Sbjct: 1047997 cctgcataaatatcctcactgatattgatgacacgggaggccttacttattccacccctc 1047938
Query: 305 gttatatgaaaaattctatcaaaaacatctggatgaccatagtgcattct 354
||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct: 1047937 gttatatgaaaaattctatcaaaaacatctggatggccataatgcattct 1047888
Score = 89.7 bits (45), Expect = 2e-015
Identities = 89/104 (85%)
Strand = Plus / Minus
Query: 443 cttcccgtgaagacatgctccctaacaccaagaatagaagggtaatgcttgccacgcttc 502
||||||||||| || || || |||||||||||||| ||||| | ||||||||| | |||
Sbjct: 1047624 cttcccgtgaacacgtgttctctaacaccaagaattgaaggcttgtgcttgccatgattc 1047565
Query: 503 agagagaactcctcaagcaggtttctcattttaagtgcctnctc 546
|| |||| ||||||||||||||||||||||| ||||||| |||
Sbjct: 1047564 tgatagaattcctcaagcaggtttctcattttgagtgcctcctc 1047521
Score = 77.8 bits (39), Expect = 7e-012
Identities = 63/71 (88%)
Strand = Plus / Minus
Query: 374 agaacacgctgtcctaatgtcacaaaacttgtctcctgattagacataaatgaggccagg 433
|||||||||||||| ||||| |||||||| || |||||||| |||||||| ||||||||
Sbjct: 1047784 agaacacgctgtcccaatgtgacaaaactagtttcctgattggacataaacgaggccagc 1047725
Query: 434 gaggaaacact 444
|| ||||||||
Sbjct: 1047724 gaagaaacact 1047714
Score = 60.0 bits (30), Expect = 2e-006
Identities = 51/58 (87%)
Strand = Plus / Minus
Query: 191 acctgaatatattcatgatgagttatgcatccttgacgcagagttgagttgaatcctg 248
||||||||||||||||||||||||||| ||| ||||||||||||||||| ||||
Sbjct: 1048601 acctgaatatattcatgatgagttatgttccctaagcgcagagttgagttgaaccctg 1048544
>ref|XM_550490.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 5316
Score = 151 bits (76), Expect = 6e-034
Identities = 294/366 (80%), Gaps = 3/366 (0%)
Strand = Plus / Minus
Query: 112 aacttgttcaccatttccaccagcaacttttccttcaaatagtgcaatctgattaagtcc 171
|||||||||||| || ||||| || ||||| ||||| || ||||| || || || | ||
Sbjct: 3957 aacttgttcaccgttaccaccggctactttcccttcgaaaagtgctatttggttcaaacc 3898
Query: 172 aacatccctacctttgccaacctgaatatattcatgatgagttatgcatccttgacgcag 231
|||||| | ||||| |||||||| ||||||||||| || || || ||| || |||||
Sbjct: 3897 aacatctcgtcctttcccaacctggatatattcatggtgtgtgatatttccctggcgcag 3838
Query: 232 agttgagttgaatcctgcatatatatcctcactgatattgatgctgcgagaggccttact 291
||| || |||||||| ||||||||||| ||||| ||||| || | || || || ||
Sbjct: 3837 agtcgaattgaatccagcatatatatcttcacttatattaatcaccccggatgctttgct 3778
Query: 292 aattccaccccttgttatatgaaaaattctatcaaaaacatctggatgaccatagtgcat 351
|| ||||| || ||||||||||| || | |||||||||||| ||||| ||||| |||||
Sbjct: 3777 tatgccacctctggttatatgaaatatgcgatcaaaaacatcaggatgtccataatgcat 3718
Query: 352 tctcactttcagcgggttagcaagaacacgctgtcctaatgtcacaaaacttgtctcctg 411
|| || || || || |||||||||||| || || || || ||||||||||| |||||
Sbjct: 3717 tcgaaccttgag---gtaagcaagaacacgttgccccaaagtaacaaaacttgtttcctg 3661
Query: 412 attagacataaatgaggccagggaggaaacacttcccgtgaagacatgctccctaacacc 471
|||||||||||||| || || || ||||||||||||||||| ||||| |||||||||||
Sbjct: 3660 gttagacataaatgatgcaagcgaagaaacacttcccgtgaacacatgttccctaacacc 3601
Query: 472 aagaat 477
||||||
Sbjct: 3600 aagaat 3595
>gb|CZ555992.1|CZ555992 M0029556 AS_TRIM_TDNA_B1 Oryza sativa (japonica cultivar-group)
genomic clone M0029556, DNA sequence
Length = 274
Score = 77.8 bits (39), Expect = 7e-012
Identities = 71/82 (86%)
Strand = Plus / Plus
Query: 465 taacaccaagaatagaagggtaatgcttgccacgcttcagagagaactcctcaagcaggt 524
||||||||||||| ||||| | ||||||||| | ||| || |||| |||||||||||||
Sbjct: 104 taacaccaagaattgaaggcttgtgcttgccatgattctgatagaattcctcaagcaggt 163
Query: 525 ttctcattttaagtgcctnctc 546
|||||||||| ||||||| |||
Sbjct: 164 ttctcattttgagtgcctcctc 185
>gb|AACV01012882.1| Oryza sativa (japonica cultivar-group) chromosome 6 Ctg012882, whole
genome shotgun sequence
Length = 24683
Score = 61.9 bits (31), Expect = 4e-007
Identities = 64/75 (85%)
Strand = Plus / Minus
Query: 370 agcaagaacacgctgtcctaatgtcacaaaacttgtctcctgattagacataaatgaggc 429
|||||||||||| || || || || ||||||||||| ||||| |||||||||||||| ||
Sbjct: 10124 agcaagaacacgttgccccaaagtaacaaaacttgtttcctggttagacataaatgatgc 10065
Query: 430 cagggaggaaacact 444
|| || ||||||||
Sbjct: 10064 aagcgaagaaacact 10050
Score = 54.0 bits (27), Expect = 1e-004
Identities = 33/35 (94%)
Strand = Plus / Minus
Query: 443 cttcccgtgaagacatgctccctaacaccaagaat 477
||||||||||| ||||| |||||||||||||||||
Sbjct: 9959 cttcccgtgaacacatgttccctaacaccaagaat 9925
Score = 52.0 bits (26), Expect = 4e-004
Identities = 50/58 (86%)
Strand = Plus / Minus
Query: 296 ccaccccttgttatatgaaaaattctatcaaaaacatctggatgaccatagtgcattc 353
||||| || ||||||||||| || | |||||||||||| ||||| ||||| |||||||
Sbjct: 10326 ccacctctggttatatgaaatatgcgatcaaaaacatcaggatgtccataatgcattc 10269
>dbj|AP001552.1| Oryza sativa (japonica cultivar-group) geneomic DNA, chromosome 6, PAC
clone:P0029D06
Length = 150120
Score = 61.9 bits (31), Expect = 4e-007
Identities = 64/75 (85%)
Strand = Plus / Plus
Query: 370 agcaagaacacgctgtcctaatgtcacaaaacttgtctcctgattagacataaatgaggc 429
|||||||||||| || || || || ||||||||||| ||||| |||||||||||||| ||
Sbjct: 136229 agcaagaacacgttgccccaaagtaacaaaacttgtttcctggttagacataaatgatgc 136288
Query: 430 cagggaggaaacact 444
|| || ||||||||
Sbjct: 136289 aagcgaagaaacact 136303
Score = 54.0 bits (27), Expect = 1e-004
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 443 cttcccgtgaagacatgctccctaacaccaagaat 477
||||||||||| ||||| |||||||||||||||||
Sbjct: 136394 cttcccgtgaacacatgttccctaacaccaagaat 136428
Score = 52.0 bits (26), Expect = 4e-004
Identities = 50/58 (86%)
Strand = Plus / Plus
Query: 296 ccaccccttgttatatgaaaaattctatcaaaaacatctggatgaccatagtgcattc 353
||||| || ||||||||||| || | |||||||||||| ||||| ||||| |||||||
Sbjct: 136027 ccacctctggttatatgaaatatgcgatcaaaaacatcaggatgtccataatgcattc 136084
>dbj|AP001389.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
clone:P0541H01
Length = 157519
Score = 61.9 bits (31), Expect = 4e-007
Identities = 64/75 (85%)
Strand = Plus / Plus
Query: 370 agcaagaacacgctgtcctaatgtcacaaaacttgtctcctgattagacataaatgaggc 429
|||||||||||| || || || || ||||||||||| ||||| |||||||||||||| ||
Sbjct: 12935 agcaagaacacgttgccccaaagtaacaaaacttgtttcctggttagacataaatgatgc 12994
Query: 430 cagggaggaaacact 444
|| || ||||||||
Sbjct: 12995 aagcgaagaaacact 13009
Score = 54.0 bits (27), Expect = 1e-004
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 443 cttcccgtgaagacatgctccctaacaccaagaat 477
||||||||||| ||||| |||||||||||||||||
Sbjct: 13100 cttcccgtgaacacatgttccctaacaccaagaat 13134
Score = 52.0 bits (26), Expect = 4e-004
Identities = 50/58 (86%)
Strand = Plus / Plus
Query: 296 ccaccccttgttatatgaaaaattctatcaaaaacatctggatgaccatagtgcattc 353
||||| || ||||||||||| || | |||||||||||| ||||| ||||| |||||||
Sbjct: 12733 ccacctctggttatatgaaatatgcgatcaaaaacatcaggatgtccataatgcattc 12790
>ref|NT_107230.2| Oryza sativa (japonica cultivar-group)
Length = 2805126
Score = 61.9 bits (31), Expect = 4e-007
Identities = 64/75 (85%)
Strand = Plus / Plus
Query: 370 agcaagaacacgctgtcctaatgtcacaaaacttgtctcctgattagacataaatgaggc 429
|||||||||||| || || || || ||||||||||| ||||| |||||||||||||| ||
Sbjct: 693378 agcaagaacacgttgccccaaagtaacaaaacttgtttcctggttagacataaatgatgc 693437
Query: 430 cagggaggaaacact 444
|| || ||||||||
Sbjct: 693438 aagcgaagaaacact 693452
Score = 54.0 bits (27), Expect = 1e-004
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 443 cttcccgtgaagacatgctccctaacaccaagaat 477
||||||||||| ||||| |||||||||||||||||
Sbjct: 693543 cttcccgtgaacacatgttccctaacaccaagaat 693577
Score = 52.0 bits (26), Expect = 4e-004
Identities = 50/58 (86%)
Strand = Plus / Plus
Query: 296 ccaccccttgttatatgaaaaattctatcaaaaacatctggatgaccatagtgcattc 353
||||| || ||||||||||| || | |||||||||||| ||||| ||||| |||||||
Sbjct: 693176 ccacctctggttatatgaaatatgcgatcaaaaacatcaggatgtccataatgcattc 693233
>gb|CH401209.1| Oryza sativa (japonica cultivar-group) chromosome 6 scaffold000046
genomic scaffold, whole genome shotgun sequence
Length = 8607552
Score = 61.9 bits (31), Expect = 4e-007
Identities = 64/75 (85%)
Strand = Plus / Plus
Query: 370 agcaagaacacgctgtcctaatgtcacaaaacttgtctcctgattagacataaatgaggc 429
|||||||||||| || || || || ||||||||||| ||||| |||||||||||||| ||
Sbjct: 622197 agcaagaacacgttgccccaaagtaacaaaacttgtttcctggttagacataaatgatgc 622256
Query: 430 cagggaggaaacact 444
|| || ||||||||
Sbjct: 622257 aagcgaagaaacact 622271
Score = 54.0 bits (27), Expect = 1e-004
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 443 cttcccgtgaagacatgctccctaacaccaagaat 477
||||||||||| ||||| |||||||||||||||||
Sbjct: 622362 cttcccgtgaacacatgttccctaacaccaagaat 622396
Score = 52.0 bits (26), Expect = 4e-004
Identities = 50/58 (86%)
Strand = Plus / Plus
Query: 296 ccaccccttgttatatgaaaaattctatcaaaaacatctggatgaccatagtgcattc 353
||||| || ||||||||||| || | |||||||||||| ||||| ||||| |||||||
Sbjct: 621995 ccacctctggttatatgaaatatgcgatcaaaaacatcaggatgtccataatgcattc 622052
Score = 50.1 bits (25), Expect = 0.002
Identities = 55/65 (84%)
Strand = Plus / Plus
Query: 284 gccttactaattccaccccttgttatatgaaaaattctatcaaaaacatctggatgacca 343
||||| ||||| ||||| | ||| || ||||||||||||||||| ||||| ||||| ||
Sbjct: 3913963 gccttgctaatgccacctcgtgtaatgtgaaaaattctatcaaatacatcaggatgcccg 3914022
Query: 344 tagtg 348
|||||
Sbjct: 3914023 tagtg 3914027
Score = 48.1 bits (24), Expect = 0.006
Identities = 54/64 (84%)
Strand = Plus / Plus
Query: 144 cttcaaatagtgcaatctgattaagtccaacatccctacctttgccaacctgaatatatt 203
||||||| || | ||| |||||||| |||||||| | ||||||||||| ||||| ||||
Sbjct: 3913748 cttcaaagagagaaatttgattaagaccaacatctcgtcctttgccaacttgaatgtatt 3913807
Query: 204 catg 207
||||
Sbjct: 3913808 catg 3913811
>gb|CM000143.1| Oryza sativa (japonica cultivar-group) chromosome 6, whole genome shotgun
sequence
Length = 29740507
Score = 61.9 bits (31), Expect = 4e-007
Identities = 64/75 (85%)
Strand = Plus / Plus
Query: 370 agcaagaacacgctgtcctaatgtcacaaaacttgtctcctgattagacataaatgaggc 429
|||||||||||| || || || || ||||||||||| ||||| |||||||||||||| ||
Sbjct: 622197 agcaagaacacgttgccccaaagtaacaaaacttgtttcctggttagacataaatgatgc 622256
Query: 430 cagggaggaaacact 444
|| || ||||||||
Sbjct: 622257 aagcgaagaaacact 622271
Score = 58.0 bits (29), Expect = 7e-006
Identities = 53/61 (86%)
Strand = Plus / Plus
Query: 360 tcagcgggttagcaagaacacgctgtcctaatgtcacaaaacttgtctcctgattagaca 419
|||| ||||| ||||| ||||||||||| | ||||||||||| ||||||||||| ||||
Sbjct: 29551553 tcagggggttggcaagcacacgctgtccaatagtcacaaaactggtctcctgatttgaca 29551612
Query: 420 t 420
|
Sbjct: 29551613 t 29551613
Score = 54.0 bits (27), Expect = 1e-004
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 443 cttcccgtgaagacatgctccctaacaccaagaat 477
||||||||||| ||||| |||||||||||||||||
Sbjct: 622362 cttcccgtgaacacatgttccctaacaccaagaat 622396
Score = 52.0 bits (26), Expect = 4e-004
Identities = 50/58 (86%)
Strand = Plus / Plus
Query: 296 ccaccccttgttatatgaaaaattctatcaaaaacatctggatgaccatagtgcattc 353
||||| || ||||||||||| || | |||||||||||| ||||| ||||| |||||||
Sbjct: 621995 ccacctctggttatatgaaatatgcgatcaaaaacatcaggatgtccataatgcattc 622052
Score = 50.1 bits (25), Expect = 0.002
Identities = 55/65 (84%)
Strand = Plus / Plus
Query: 284 gccttactaattccaccccttgttatatgaaaaattctatcaaaaacatctggatgacca 343
||||| ||||| ||||| | ||| || ||||||||||||||||| ||||| ||||| ||
Sbjct: 3913963 gccttgctaatgccacctcgtgtaatgtgaaaaattctatcaaatacatcaggatgcccg 3914022
Query: 344 tagtg 348
|||||
Sbjct: 3914023 tagtg 3914027
Score = 48.1 bits (24), Expect = 0.006
Identities = 54/64 (84%)
Strand = Plus / Plus
Query: 144 cttcaaatagtgcaatctgattaagtccaacatccctacctttgccaacctgaatatatt 203
||||||| || | ||| |||||||| |||||||| | ||||||||||| ||||| ||||
Sbjct: 3913748 cttcaaagagagaaatttgattaagaccaacatctcgtcctttgccaacttgaatgtatt 3913807
Query: 204 catg 207
||||
Sbjct: 3913808 catg 3913811
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6,
complete sequence
Length = 30731886
Score = 61.9 bits (31), Expect = 4e-007
Identities = 64/75 (85%)
Strand = Plus / Plus
Query: 370 agcaagaacacgctgtcctaatgtcacaaaacttgtctcctgattagacataaatgaggc 429
|||||||||||| || || || || ||||||||||| ||||| |||||||||||||| ||
Sbjct: 729801 agcaagaacacgttgccccaaagtaacaaaacttgtttcctggttagacataaatgatgc 729860
Query: 430 cagggaggaaacact 444
|| || ||||||||
Sbjct: 729861 aagcgaagaaacact 729875
Score = 58.0 bits (29), Expect = 7e-006
Identities = 53/61 (86%)
Strand = Plus / Plus
Query: 360 tcagcgggttagcaagaacacgctgtcctaatgtcacaaaacttgtctcctgattagaca 419
|||| ||||| ||||| ||||||||||| | ||||||||||| ||||||||||| ||||
Sbjct: 30520797 tcagggggttggcaagcacacgctgtccaatagtcacaaaactggtctcctgatttgaca 30520856
Query: 420 t 420
|
Sbjct: 30520857 t 30520857
Score = 54.0 bits (27), Expect = 1e-004
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 443 cttcccgtgaagacatgctccctaacaccaagaat 477
||||||||||| ||||| |||||||||||||||||
Sbjct: 729966 cttcccgtgaacacatgttccctaacaccaagaat 730000
Score = 52.0 bits (26), Expect = 4e-004
Identities = 50/58 (86%)
Strand = Plus / Plus
Query: 296 ccaccccttgttatatgaaaaattctatcaaaaacatctggatgaccatagtgcattc 353
||||| || ||||||||||| || | |||||||||||| ||||| ||||| |||||||
Sbjct: 729599 ccacctctggttatatgaaatatgcgatcaaaaacatcaggatgtccataatgcattc 729656
Score = 50.1 bits (25), Expect = 0.002
Identities = 55/65 (84%)
Strand = Plus / Plus
Query: 284 gccttactaattccaccccttgttatatgaaaaattctatcaaaaacatctggatgacca 343
||||| ||||| ||||| | ||| || ||||||||||||||||| ||||| ||||| ||
Sbjct: 4081384 gccttgctaatgccacctcgtgtaatgtgaaaaattctatcaaatacatcaggatgcccg 4081443
Query: 344 tagtg 348
|||||
Sbjct: 4081444 tagtg 4081448
Score = 48.1 bits (24), Expect = 0.006
Identities = 54/64 (84%)
Strand = Plus / Plus
Query: 144 cttcaaatagtgcaatctgattaagtccaacatccctacctttgccaacctgaatatatt 203
||||||| || | ||| |||||||| |||||||| | ||||||||||| ||||| ||||
Sbjct: 4081169 cttcaaagagagaaatttgattaagaccaacatctcgtcctttgccaacttgaatgtatt 4081228
Query: 204 catg 207
||||
Sbjct: 4081229 catg 4081232
>ref|NT_107235.1| Oryza sativa (japonica cultivar-group)
Length = 369247
Score = 58.0 bits (29), Expect = 7e-006
Identities = 53/61 (86%)
Strand = Plus / Plus
Query: 360 tcagcgggttagcaagaacacgctgtcctaatgtcacaaaacttgtctcctgattagaca 419
|||| ||||| ||||| ||||||||||| | ||||||||||| ||||||||||| ||||
Sbjct: 158158 tcagggggttggcaagcacacgctgtccaatagtcacaaaactggtctcctgatttgaca 158217
Query: 420 t 420
|
Sbjct: 158218 t 158218
>dbj|AP004685.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
clone:P0017G10
Length = 166700
Score = 58.0 bits (29), Expect = 7e-006
Identities = 53/61 (86%)
Strand = Plus / Plus
Query: 360 tcagcgggttagcaagaacacgctgtcctaatgtcacaaaacttgtctcctgattagaca 419
|||| ||||| ||||| ||||||||||| | ||||||||||| ||||||||||| ||||
Sbjct: 158158 tcagggggttggcaagcacacgctgtccaatagtcacaaaactggtctcctgatttgaca 158217
Query: 420 t 420
|
Sbjct: 158218 t 158218
>dbj|AP005750.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
clone:OSJNBa0069C14
Length = 150579
Score = 58.0 bits (29), Expect = 7e-006
Identities = 53/61 (86%)
Strand = Plus / Plus
Query: 360 tcagcgggttagcaagaacacgctgtcctaatgtcacaaaacttgtctcctgattagaca 419
|||| ||||| ||||| ||||||||||| | ||||||||||| ||||||||||| ||||
Sbjct: 19360 tcagggggttggcaagcacacgctgtccaatagtcacaaaactggtctcctgatttgaca 19419
Query: 420 t 420
|
Sbjct: 19420 t 19420
>gb|AACV01014975.1| Oryza sativa (japonica cultivar-group) chromosome 6 Ctg014975, whole
genome shotgun sequence
Length = 9397
Score = 58.0 bits (29), Expect = 7e-006
Identities = 53/61 (86%)
Strand = Plus / Minus
Query: 360 tcagcgggttagcaagaacacgctgtcctaatgtcacaaaacttgtctcctgattagaca 419
|||| ||||| ||||| ||||||||||| | ||||||||||| ||||||||||| ||||
Sbjct: 2359 tcagggggttggcaagcacacgctgtccaatagtcacaaaactggtctcctgatttgaca 2300
Query: 420 t 420
|
Sbjct: 2299 t 2299
>gb|CH401216.1| Oryza sativa (japonica cultivar-group) chromosome 6 scaffold000053 genomic
scaffold, whole genome shotgun sequence
Length = 12033173
Score = 58.0 bits (29), Expect = 7e-006
Identities = 53/61 (86%)
Strand = Plus / Plus
Query: 360 tcagcgggttagcaagaacacgctgtcctaatgtcacaaaacttgtctcctgattagaca 419
|||| ||||| ||||| ||||||||||| | ||||||||||| ||||||||||| ||||
Sbjct: 11852816 tcagggggttggcaagcacacgctgtccaatagtcacaaaactggtctcctgatttgaca 11852875
Query: 420 t 420
|
Sbjct: 11852876 t 11852876
>gb|AY324384.1| Oryza sativa (japonica cultivar-group) callose synthase-like protein
mRNA, partial cds
Length = 2727
Score = 56.0 bits (28), Expect = 3e-005
Identities = 103/128 (80%)
Strand = Plus / Minus
Query: 146 tcaaatagtgcaatctgattaagtccaacatccctacctttgccaacctgaatatattca 205
|||||||||| || ||||| || || ||||| || || |||||||| || || ||||||
Sbjct: 1313 tcaaatagtgagatttgattgagacccacatctctccccttgccaacttgcatgtattca 1254
Query: 206 tgatgagttatgcatccttgacgcagagttgagttgaatcctgcatatatatcctcactg 265
||||| || | ||||| |||||| |||||||||||||| ||| |||| ||||||||
Sbjct: 1253 tgatgcgtaacatttccttcacgcagtgttgagttgaatccagcaaatatgtcctcacta 1194
Query: 266 atattgat 273
| ||||||
Sbjct: 1193 agattgat 1186
>ref|XM_468556.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 5910
Score = 56.0 bits (28), Expect = 3e-005
Identities = 103/128 (80%)
Strand = Plus / Minus
Query: 146 tcaaatagtgcaatctgattaagtccaacatccctacctttgccaacctgaatatattca 205
|||||||||| || ||||| || || ||||| || || |||||||| || || ||||||
Sbjct: 4496 tcaaatagtgagatttgattgagacccacatctctccccttgccaacttgcatgtattca 4437
Query: 206 tgatgagttatgcatccttgacgcagagttgagttgaatcctgcatatatatcctcactg 265
||||| || | ||||| |||||| |||||||||||||| ||| |||| ||||||||
Sbjct: 4436 tgatgcgtaacatttccttcacgcagtgttgagttgaatccagcaaatatgtcctcacta 4377
Query: 266 atattgat 273
| ||||||
Sbjct: 4376 agattgat 4369
>dbj|AK100271.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023069L11, full
insert sequence
Length = 2442
Score = 52.0 bits (26), Expect = 4e-004
Identities = 134/170 (78%)
Strand = Plus / Minus
Query: 284 gccttactaattccaccccttgttatatgaaaaattctatcaaaaacatctggatgacca 343
||||| ||||| ||||| | ||| || ||||||||||||||||| ||||| ||||| ||
Sbjct: 1804 gccttgctaatgccacctcgtgtaatgtgaaaaattctatcaaatacatcaggatgcccg 1745
Query: 344 tagtgcattctcactttcagcgggttagcaagaacacgctgtcctaatgtcacaaaactt 403
||||| | | || |||| || ||||| || || | |||||| | ||||||||| |||
Sbjct: 1744 tagtgaaaacgtaccttcaatggattagctagtactctctgtccaattgtcacaaagctt 1685
Query: 404 gtctcctgattagacataaatgaggccagggaggaaacacttcccgtgaa 453
|| ||||| || |||||||| | || || ||||| |||||||| |||||
Sbjct: 1684 gtttcctggtttgacataaaccacgcgagagaggacacacttccagtgaa 1635
Score = 48.1 bits (24), Expect = 0.006
Identities = 54/64 (84%)
Strand = Plus / Minus
Query: 144 cttcaaatagtgcaatctgattaagtccaacatccctacctttgccaacctgaatatatt 203
||||||| || | ||| |||||||| |||||||| | ||||||||||| ||||| ||||
Sbjct: 1944 cttcaaagagagaaatttgattaagaccaacatctcgtcctttgccaacttgaatgtatt 1885
Query: 204 catg 207
||||
Sbjct: 1884 catg 1881
>gb|AQ272832.1|AQ272832 nbxb0028B24r CUGI Rice BAC Library Oryza sativa (japonica
cultivar-group) genomic clone nbxb0028B24r, DNA sequence
Length = 726
Score = 50.1 bits (25), Expect = 0.002
Identities = 91/113 (80%)
Strand = Plus / Plus
Query: 104 cggctaagaacttgttcaccatttccaccagcaacttttccttcaaatagtgcaatctga 163
||||||||| |||||||| ||| ||| |||||||| |||||||| || ||||||
Sbjct: 172 cggctaagagtttgttcactattcccatttgcaactttagcttcaaattttgatatctga 231
Query: 164 ttaagtccaacatccctacctttgccaacctgaatatattcatgatgagttat 216
||||| |||||||| | ||||||||||| ||||| || |||| || ||||||
Sbjct: 232 ttaagaccaacatcacgccctttgccaacttgaatgtactcattataagttat 284
>gb|AQ687725.1|AQ687725 nbxb0075F07f CUGI Rice BAC Library Oryza sativa (japonica
cultivar-group) genomic clone nbxb0075F07f, DNA sequence
Length = 817
Score = 50.1 bits (25), Expect = 0.002
Identities = 91/113 (80%)
Strand = Plus / Plus
Query: 104 cggctaagaacttgttcaccatttccaccagcaacttttccttcaaatagtgcaatctga 163
||||||||| |||||||| ||| ||| |||||||| |||||||| || ||||||
Sbjct: 176 cggctaagagtttgttcactattcccatttgcaactttagcttcaaattttgatatctga 235
Query: 164 ttaagtccaacatccctacctttgccaacctgaatatattcatgatgagttat 216
||||| |||||||| | ||||||||||| ||||| || |||| || ||||||
Sbjct: 236 ttaagaccaacatcacgccctttgccaacttgaatgtactcattataagttat 288
>gb|AQ840847.1|AQ840847 nbxb0071P12r CUGI Rice BAC Library Oryza sativa (japonica
cultivar-group) genomic clone nbxb0071P12r, DNA sequence
Length = 843
Score = 50.1 bits (25), Expect = 0.002
Identities = 91/113 (80%)
Strand = Plus / Plus
Query: 104 cggctaagaacttgttcaccatttccaccagcaacttttccttcaaatagtgcaatctga 163
||||||||| |||||||| ||| ||| |||||||| |||||||| || ||||||
Sbjct: 177 cggctaagagtttgttcactattcccatttgcaactttagcttcaaattttgatatctga 236
Query: 164 ttaagtccaacatccctacctttgccaacctgaatatattcatgatgagttat 216
||||| |||||||| | ||||||||||| ||||| || |||| || ||||||
Sbjct: 237 ttaagaccaacatcacgccctttgccaacttgaatgtactcattataagttat 289
>dbj|AG208568.1| Oryza sativa (japonica cultivar-group) DNA, clone:NE3534_0_403_1A,
3' flanking sequence of Tos17 insertion in rice strain
NE3534, genomic survey sequence
Length = 505
Score = 50.1 bits (25), Expect = 0.002
Identities = 55/65 (84%)
Strand = Plus / Plus
Query: 284 gccttactaattccaccccttgttatatgaaaaattctatcaaaaacatctggatgacca 343
||||| ||||| ||||| | ||| || ||||||||||||||||| ||||| ||||| ||
Sbjct: 364 gccttgctaatgccacctcgtgtaatgtgaaaaattctatcaaatacatcaggatgcccg 423
Query: 344 tagtg 348
|||||
Sbjct: 424 tagtg 428
Score = 48.1 bits (24), Expect = 0.006
Identities = 54/64 (84%)
Strand = Plus / Plus
Query: 144 cttcaaatagtgcaatctgattaagtccaacatccctacctttgccaacctgaatatatt 203
||||||| || | ||| |||||||| |||||||| | ||||||||||| ||||| ||||
Sbjct: 149 cttcaaagagagaaatttgattaagaccaacatctcgtcctttgccaacttgaatgtatt 208
Query: 204 catg 207
||||
Sbjct: 209 catg 212
>dbj|AG208570.1| Oryza sativa (japonica cultivar-group) DNA, clone:NE3516_0_402_1A,
3' flanking sequence of Tos17 insertion in rice strain
NE3516, genomic survey sequence
Length = 505
Score = 50.1 bits (25), Expect = 0.002
Identities = 55/65 (84%)
Strand = Plus / Plus
Query: 284 gccttactaattccaccccttgttatatgaaaaattctatcaaaaacatctggatgacca 343
||||| ||||| ||||| | ||| || ||||||||||||||||| ||||| ||||| ||
Sbjct: 364 gccttgctaatgccacctcgtgtaatgtgaaaaattctatcaaatacatcaggatgcccg 423
Query: 344 tagtg 348
|||||
Sbjct: 424 tagtg 428
Score = 48.1 bits (24), Expect = 0.006
Identities = 54/64 (84%)
Strand = Plus / Plus
Query: 144 cttcaaatagtgcaatctgattaagtccaacatccctacctttgccaacctgaatatatt 203
||||||| || | ||| |||||||| |||||||| | ||||||||||| ||||| ||||
Sbjct: 149 cttcaaagagagaaatttgattaagaccaacatctcgtcctttgccaacttgaatgtatt 208
Query: 204 catg 207
||||
Sbjct: 209 catg 212
>dbj|AG210242.1| Oryza sativa (japonica cultivar-group) DNA, clone:NF0030_0_131_1A,
3' flanking sequence of Tos17 insertion in rice strain
NF0030, genomic survey sequence
Length = 581
Score = 50.1 bits (25), Expect = 0.002
Identities = 55/65 (84%)
Strand = Plus / Plus
Query: 284 gccttactaattccaccccttgttatatgaaaaattctatcaaaaacatctggatgacca 343
||||| ||||| ||||| | ||| || ||||||||||||||||| ||||| ||||| ||
Sbjct: 377 gccttgctaatgccacctcgtgtaatgtgaaaaattctatcaaatacatcaggatgcccg 436
Query: 344 tagtg 348
|||||
Sbjct: 437 tagtg 441
Score = 46.1 bits (23), Expect = 0.025
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 161 tgattaagtccaacatccctacctttgccaacctgaatatattcatg 207
|||||||| |||||||| | ||||||||||| ||||| ||||||||
Sbjct: 179 tgattaagaccaacatctcgtcctttgccaacttgaatgtattcatg 225
>dbj|AG211136.1| Oryza sativa (japonica cultivar-group) DNA, clone:NF3711_0_102_1A,
3' flanking sequence of Tos17 insertion in rice strain
NF3711, genomic survey sequence
Length = 573
Score = 50.1 bits (25), Expect = 0.002
Identities = 55/65 (84%)
Strand = Plus / Plus
Query: 284 gccttactaattccaccccttgttatatgaaaaattctatcaaaaacatctggatgacca 343
||||| ||||| ||||| | ||| || ||||||||||||||||| ||||| ||||| ||
Sbjct: 175 gccttgctaatgccacctcgtgtaatgtgaaaaattctatcaaatacatcaggatgcccg 234
Query: 344 tagtg 348
|||||
Sbjct: 235 tagtg 239
>dbj|AG020899.1| Oryza sativa (japonica cultivar-group) DNA, clone:H0205_0_01_1A, 3'
flanking sequence of Tos17 insertion in rice strain
H0205, genomic survey sequence
Length = 799
Score = 50.1 bits (25), Expect = 0.002
Identities = 55/65 (84%)
Strand = Plus / Plus
Query: 284 gccttactaattccaccccttgttatatgaaaaattctatcaaaaacatctggatgacca 343
||||| ||||| ||||| | ||| || ||||||||||||||||| ||||| ||||| ||
Sbjct: 508 gccttgctaatgccacctcgtgtaatgtgaaaaattctatcaaatacatcaggatgcccg 567
Query: 344 tagtg 348
|||||
Sbjct: 568 tagtg 572
Score = 48.1 bits (24), Expect = 0.006
Identities = 54/64 (84%)
Strand = Plus / Plus
Query: 144 cttcaaatagtgcaatctgattaagtccaacatccctacctttgccaacctgaatatatt 203
||||||| || | ||| |||||||| |||||||| | ||||||||||| ||||| ||||
Sbjct: 293 cttcaaagagagaaatttgattaagaccaacatctcgtcctttgccaacttgaatgtatt 352
Query: 204 catg 207
||||
Sbjct: 353 catg 356
>dbj|AP003454.1| Oryza sativa (japonica cultivar-group) chromosome 6 clone P0499E08, ***
SEQUENCING IN PROGRESS ***
Length = 85150
Score = 50.1 bits (25), Expect = 0.002
Identities = 55/65 (84%)
Strand = Plus / Plus
Query: 284 gccttactaattccaccccttgttatatgaaaaattctatcaaaaacatctggatgacca 343
||||| ||||| ||||| | ||| || ||||||||||||||||| ||||| ||||| ||
Sbjct: 42174 gccttgctaatgccacctcgtgtaatgtgaaaaattctatcaaatacatcaggatgcccg 42233
Query: 344 tagtg 348
|||||
Sbjct: 42234 tagtg 42238
Score = 48.1 bits (24), Expect = 0.006
Identities = 54/64 (84%)
Strand = Plus / Plus
Query: 144 cttcaaatagtgcaatctgattaagtccaacatccctacctttgccaacctgaatatatt 203
||||||| || | ||| |||||||| |||||||| | ||||||||||| ||||| ||||
Sbjct: 41959 cttcaaagagagaaatttgattaagaccaacatctcgtcctttgccaacttgaatgtatt 42018
Query: 204 catg 207
||||
Sbjct: 42019 catg 42022
>dbj|AP005614.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
clone:OSJNBa0090H18
Length = 174842
Score = 50.1 bits (25), Expect = 0.002
Identities = 91/113 (80%)
Strand = Plus / Minus
Query: 104 cggctaagaacttgttcaccatttccaccagcaacttttccttcaaatagtgcaatctga 163
||||||||| |||||||| ||| ||| |||||||| |||||||| || ||||||
Sbjct: 89783 cggctaagagtttgttcactattcccatttgcaactttagcttcaaattttgatatctga 89724
Query: 164 ttaagtccaacatccctacctttgccaacctgaatatattcatgatgagttat 216
||||| |||||||| | ||||||||||| ||||| || |||| || ||||||
Sbjct: 89723 ttaagaccaacatcacgccctttgccaacttgaatgtactcattataagttat 89671
>gb|AACV01003740.1| Oryza sativa (japonica cultivar-group) chromosome 2 Ctg003740, whole
genome shotgun sequence
Length = 20856
Score = 50.1 bits (25), Expect = 0.002
Identities = 91/113 (80%)
Strand = Plus / Minus
Query: 104 cggctaagaacttgttcaccatttccaccagcaacttttccttcaaatagtgcaatctga 163
||||||||| |||||||| ||| ||| |||||||| |||||||| || ||||||
Sbjct: 13804 cggctaagagtttgttcactattcccatttgcaactttagcttcaaattttgatatctga 13745
Query: 164 ttaagtccaacatccctacctttgccaacctgaatatattcatgatgagttat 216
||||| |||||||| | ||||||||||| ||||| || |||| || ||||||
Sbjct: 13744 ttaagaccaacatcacgccctttgccaacttgaatgtactcattataagttat 13692
>gb|AACV01013162.1| Oryza sativa (japonica cultivar-group) chromosome 6 Ctg013162, whole
genome shotgun sequence
Length = 37554
Score = 50.1 bits (25), Expect = 0.002
Identities = 55/65 (84%)
Strand = Plus / Minus
Query: 284 gccttactaattccaccccttgttatatgaaaaattctatcaaaaacatctggatgacca 343
||||| ||||| ||||| | ||| || ||||||||||||||||| ||||| ||||| ||
Sbjct: 35684 gccttgctaatgccacctcgtgtaatgtgaaaaattctatcaaatacatcaggatgcccg 35625
Query: 344 tagtg 348
|||||
Sbjct: 35624 tagtg 35620
Score = 48.1 bits (24), Expect = 0.006
Identities = 54/64 (84%)
Strand = Plus / Minus
Query: 144 cttcaaatagtgcaatctgattaagtccaacatccctacctttgccaacctgaatatatt 203
||||||| || | ||| |||||||| |||||||| | ||||||||||| ||||| ||||
Sbjct: 35899 cttcaaagagagaaatttgattaagaccaacatctcgtcctttgccaacttgaatgtatt 35840
Query: 204 catg 207
||||
Sbjct: 35839 catg 35836
>ref|NM_193211.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 5634
Score = 50.1 bits (25), Expect = 0.002
Identities = 55/65 (84%)
Strand = Plus / Minus
Query: 197 atatattcatgatgagttatgcatccttgacgcagagttgagttgaatcctgcatatata 256
||||||||||||||||| | |||||| ||||| ||||| |||||||||||| | |||
Sbjct: 4178 atatattcatgatgagtaacatttccttgccgcagggttgaattgaatcctgcaaagata 4119
Query: 257 tcctc 261
|||||
Sbjct: 4118 tcctc 4114
Score = 44.1 bits (22), Expect = 0.100
Identities = 43/50 (86%)
Strand = Plus / Minus
Query: 296 ccaccccttgttatatgaaaaattctatcaaaaacatctggatgaccata 345
||||||||||| | ||||| |||||||| |||||||| || ||||||||
Sbjct: 4079 ccaccccttgtgaggtgaaagattctatcgaaaacatcagggtgaccata 4030
>dbj|AP007226.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
clone:OSJNBb0036B04
Length = 136159
Score = 50.1 bits (25), Expect = 0.002
Identities = 55/65 (84%)
Strand = Plus / Plus
Query: 284 gccttactaattccaccccttgttatatgaaaaattctatcaaaaacatctggatgacca 343
||||| ||||| ||||| | ||| || ||||||||||||||||| ||||| ||||| ||
Sbjct: 14643 gccttgctaatgccacctcgtgtaatgtgaaaaattctatcaaatacatcaggatgcccg 14702
Query: 344 tagtg 348
|||||
Sbjct: 14703 tagtg 14707
Score = 48.1 bits (24), Expect = 0.006
Identities = 54/64 (84%)
Strand = Plus / Plus
Query: 144 cttcaaatagtgcaatctgattaagtccaacatccctacctttgccaacctgaatatatt 203
||||||| || | ||| |||||||| |||||||| | ||||||||||| ||||| ||||
Sbjct: 14428 cttcaaagagagaaatttgattaagaccaacatctcgtcctttgccaacttgaatgtatt 14487
Query: 204 catg 207
||||
Sbjct: 14488 catg 14491
>dbj|AP007257.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
clone:OSJNBb0019L07
Length = 131650
Score = 50.1 bits (25), Expect = 0.002
Identities = 55/65 (84%)
Strand = Plus / Plus
Query: 284 gccttactaattccaccccttgttatatgaaaaattctatcaaaaacatctggatgacca 343
||||| ||||| ||||| | ||| || ||||||||||||||||| ||||| ||||| ||
Sbjct: 125037 gccttgctaatgccacctcgtgtaatgtgaaaaattctatcaaatacatcaggatgcccg 125096
Query: 344 tagtg 348
|||||
Sbjct: 125097 tagtg 125101
Score = 48.1 bits (24), Expect = 0.006
Identities = 54/64 (84%)
Strand = Plus / Plus
Query: 144 cttcaaatagtgcaatctgattaagtccaacatccctacctttgccaacctgaatatatt 203
||||||| || | ||| |||||||| |||||||| | ||||||||||| ||||| ||||
Sbjct: 124822 cttcaaagagagaaatttgattaagaccaacatctcgtcctttgccaacttgaatgtatt 124881
Query: 204 catg 207
||||
Sbjct: 124882 catg 124885
>ref|NT_107178.1| Oryza sativa (japonica cultivar-group)
Length = 7645238
Score = 50.1 bits (25), Expect = 0.002
Identities = 91/113 (80%)
Strand = Plus / Minus
Query: 104 cggctaagaacttgttcaccatttccaccagcaacttttccttcaaatagtgcaatctga 163
||||||||| |||||||| ||| ||| |||||||| |||||||| || ||||||
Sbjct: 2343494 cggctaagagtttgttcactattcccatttgcaactttagcttcaaattttgatatctga 2343435
Query: 164 ttaagtccaacatccctacctttgccaacctgaatatattcatgatgagttat 216
||||| |||||||| | ||||||||||| ||||| || |||| || ||||||
Sbjct: 2343434 ttaagaccaacatcacgccctttgccaacttgaatgtactcattataagttat 2343382
>gb|CH401169.1| Oryza sativa (japonica cultivar-group) chromosome 2 scaffold000006 genomic
scaffold, whole genome shotgun sequence
Length = 13452964
Score = 50.1 bits (25), Expect = 0.002
Identities = 91/113 (80%)
Strand = Plus / Minus
Query: 104 cggctaagaacttgttcaccatttccaccagcaacttttccttcaaatagtgcaatctga 163
||||||||| |||||||| ||| ||| |||||||| |||||||| || ||||||
Sbjct: 8446451 cggctaagagtttgttcactattcccatttgcaactttagcttcaaattttgatatctga 8446392
Query: 164 ttaagtccaacatccctacctttgccaacctgaatatattcatgatgagttat 216
||||| |||||||| | ||||||||||| ||||| || |||| || ||||||
Sbjct: 8446391 ttaagaccaacatcacgccctttgccaacttgaatgtactcattataagttat 8446339
>gb|CM000139.1| Oryza sativa (japonica cultivar-group) chromosome 2, whole genome shotgun
sequence
Length = 36016269
Score = 50.1 bits (25), Expect = 0.002
Identities = 91/113 (80%)
Strand = Plus / Minus
Query: 104 cggctaagaacttgttcaccatttccaccagcaacttttccttcaaatagtgcaatctga 163
||||||||| |||||||| ||| ||| |||||||| |||||||| || ||||||
Sbjct: 8446451 cggctaagagtttgttcactattcccatttgcaactttagcttcaaattttgatatctga 8446392
Query: 164 ttaagtccaacatccctacctttgccaacctgaatatattcatgatgagttat 216
||||| |||||||| | ||||||||||| ||||| || |||| || ||||||
Sbjct: 8446391 ttaagaccaacatcacgccctttgccaacttgaatgtactcattataagttat 8446339
Score = 46.1 bits (23), Expect = 0.025
Identities = 83/103 (80%)
Strand = Plus / Minus
Query: 146 tcaaatagtgcaatctgattaagtccaacatccctacctttgccaacctgaatatattca 205
|||||||||| || ||||| || || ||||| || || |||||||| || || ||||||
Sbjct: 35902910 tcaaatagtgagatttgattgagacccacatctctccccttgccaacttgcatgtattca 35902851
Query: 206 tgatgagttatgcatccttgacgcagagttgagttgaatcctg 248
||||| || | ||||| |||||| ||||||||||||||||
Sbjct: 35902850 tgatgcgtaacatttccttcacgcagtgttgagttgaatcctg 35902808
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
sequence
Length = 35954743
Score = 50.1 bits (25), Expect = 0.002
Identities = 91/113 (80%)
Strand = Plus / Minus
Query: 104 cggctaagaacttgttcaccatttccaccagcaacttttccttcaaatagtgcaatctga 163
||||||||| |||||||| ||| ||| |||||||| |||||||| || ||||||
Sbjct: 8313112 cggctaagagtttgttcactattcccatttgcaactttagcttcaaattttgatatctga 8313053
Query: 164 ttaagtccaacatccctacctttgccaacctgaatatattcatgatgagttat 216
||||| |||||||| | ||||||||||| ||||| || |||| || ||||||
Sbjct: 8313052 ttaagaccaacatcacgccctttgccaacttgaatgtactcattataagttat 8313000
Score = 46.1 bits (23), Expect = 0.025
Identities = 83/103 (80%)
Strand = Plus / Minus
Query: 146 tcaaatagtgcaatctgattaagtccaacatccctacctttgccaacctgaatatattca 205
|||||||||| || ||||| || || ||||| || || |||||||| || || ||||||
Sbjct: 35820667 tcaaatagtgagatttgattgagacccacatctctccccttgccaacttgcatgtattca 35820608
Query: 206 tgatgagttatgcatccttgacgcagagttgagttgaatcctg 248
||||| || | ||||| |||||| ||||||||||||||||
Sbjct: 35820607 tgatgcgtaacatttccttcacgcagtgttgagttgaatcctg 35820565
>dbj|AG206877.1| Oryza sativa (japonica cultivar-group) DNA, clone:ND6041_0_104_1A,
3' flanking sequence of Tos17 insertion in rice strain
ND6041, genomic survey sequence
Length = 307
Score = 48.1 bits (24), Expect = 0.006
Identities = 54/64 (84%)
Strand = Plus / Plus
Query: 144 cttcaaatagtgcaatctgattaagtccaacatccctacctttgccaacctgaatatatt 203
||||||| || | ||| |||||||| |||||||| | ||||||||||| ||||| ||||
Sbjct: 208 cttcaaagagagaaatttgattaagaccaacatctcgtcctttgccaacttgaatgtatt 267
Query: 204 catg 207
||||
Sbjct: 268 catg 271
>dbj|AP004082.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
clone:OJ1149_C12
Length = 120743
Score = 46.1 bits (23), Expect = 0.025
Identities = 83/103 (80%)
Strand = Plus / Minus
Query: 146 tcaaatagtgcaatctgattaagtccaacatccctacctttgccaacctgaatatattca 205
|||||||||| || ||||| || || ||||| || || |||||||| || || ||||||
Sbjct: 91382 tcaaatagtgagatttgattgagacccacatctctccccttgccaacttgcatgtattca 91323
Query: 206 tgatgagttatgcatccttgacgcagagttgagttgaatcctg 248
||||| || | ||||| |||||| ||||||||||||||||
Sbjct: 91322 tgatgcgtaacatttccttcacgcagtgttgagttgaatcctg 91280
>dbj|AP005290.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
clone:OJ1282_E10
Length = 107284
Score = 46.1 bits (23), Expect = 0.025
Identities = 83/103 (80%)
Strand = Plus / Minus
Query: 146 tcaaatagtgcaatctgattaagtccaacatccctacctttgccaacctgaatatattca 205
|||||||||| || ||||| || || ||||| || || |||||||| || || ||||||
Sbjct: 11213 tcaaatagtgagatttgattgagacccacatctctccccttgccaacttgcatgtattca 11154
Query: 206 tgatgagttatgcatccttgacgcagagttgagttgaatcctg 248
||||| || | ||||| |||||| ||||||||||||||||
Sbjct: 11153 tgatgcgtaacatttccttcacgcagtgttgagttgaatcctg 11111
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 881,823
Number of Sequences: 438736
Number of extensions: 881823
Number of successful extensions: 5024
Number of sequences better than 0.5: 75
Number of HSP's better than 0.5 without gapping: 77
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 4438
Number of HSP's gapped (non-prelim): 574
length of query: 697
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 676
effective length of database: 2,791,206,460
effective search space: 1886855566960
effective search space used: 1886855566960
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)