BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QCA10g02.yg.2.1
(277 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|AG024164.1| Oryza sativa (japonica cultivar-group) DNA,... 234 2e-059
gb|AC091090.1|AC091090 Oryza sativa (japonica cultivar-grou... 234 2e-059
dbj|D45890.1|RICSPS1 Oryza sativa DNA for sucrose phosphate... 234 2e-059
gb|AACV01002933.1| Oryza sativa (japonica cultivar-group) c... 234 2e-059
dbj|BA000010.8| Oryza sativa (japonica cultivar-group) geno... 234 2e-059
ref|XM_463619.1| Oryza sativa (japonica cultivar-group), p... 234 2e-059
ref|NT_079927.2| Oryza sativa (japonica cultivar-group) 234 2e-059
dbj|AP003437.3| Oryza sativa (japonica cultivar-group) geno... 234 2e-059
gb|CH401168.1| Oryza sativa (japonica cultivar-group) chrom... 234 2e-059
gb|CM000138.1| Oryza sativa (japonica cultivar-group) chrom... 234 2e-059
dbj|AP008207.1| Oryza sativa (japonica cultivar-group) geno... 234 2e-059
dbj|AK121341.1| Oryza sativa (japonica cultivar-group) cDNA... 232 8e-059
dbj|AG023731.1| Oryza sativa (japonica cultivar-group) DNA,... 188 1e-045
dbj|AG205918.1| Oryza sativa (japonica cultivar-group) DNA,... 186 4e-045
dbj|AG213996.1| Oryza sativa (japonica cultivar-group) DNA,... 133 5e-029
>dbj|AG024164.1| Oryza sativa (japonica cultivar-group) DNA, clone:ND3060_0_102_1A,
3' flanking sequence of Tos17 insertion in rice strain
ND3060, genomic survey sequence
Length = 729
Score = 234 bits (118), Expect = 2e-059
Identities = 232/270 (85%)
Strand = Plus / Minus
Query: 8 tcccatttccaacctgttctcccagagccttggacatgttaaggatatgcgcaagagctc 67
||||||| | ||||||||| |||||||||||||||||||| ||||||||||| |||||||
Sbjct: 320 tcccattgctaacctgttcccccagagccttggacatgttcaggatatgcgcgagagctc 261
Query: 68 catcgacaaactcttggaggtaaggccacagtgcttccttcttgaggtatttatcccgtg 127
| ||||||||||||||||||||||||||||| || || || |||||| || |||| ||
Sbjct: 260 cgtcgacaaactcttggaggtaaggccacagggcctctttacggaggtacttgtcccttg 201
Query: 128 gtccacacggtatgcgcacaatgtaggctccggcactctcacccatcccctctccatcgt 187
| || ||||| |||||||||||||| || || ||||||||||| | |||||||| ||
Sbjct: 200 gaccgcacggaatgcgcacaatgtacgcaccagcactctcaccgcttccctctccgtcag 141
Query: 188 tggaaccggagcataacatctccgtcggctcaccatagctccagtccacgtcaggagatg 247
||||||||||| |||||| || || ||||| ||||||||||||||||| ||||||||||
Sbjct: 140 tggaaccggaggttaacatttcagtaggctccccatagctccagtccacttcaggagatg 81
Query: 248 acacttgacgagtgaagaggtccaccctgt 277
||||||||||||| || || ||||| ||||
Sbjct: 80 acacttgacgagtaaacagatccactctgt 51
>gb|AC091090.1|AC091090 Oryza sativa (japonica cultivar-group) chromosome 1 clone P0678F11, ***
SEQUENCING IN PROGRESS ***, 3 ordered pieces
Length = 155574
Score = 234 bits (118), Expect = 2e-059
Identities = 232/270 (85%)
Strand = Plus / Minus
Query: 8 tcccatttccaacctgttctcccagagccttggacatgttaaggatatgcgcaagagctc 67
||||||| | ||||||||| |||||||||||||||||||| ||||||||||| |||||||
Sbjct: 114185 tcccattgctaacctgttcccccagagccttggacatgttcaggatatgcgcgagagctc 114126
Query: 68 catcgacaaactcttggaggtaaggccacagtgcttccttcttgaggtatttatcccgtg 127
| ||||||||||||||||||||||||||||| || || || |||||| || |||| ||
Sbjct: 114125 cgtcgacaaactcttggaggtaaggccacagggcctctttacggaggtacttgtcccttg 114066
Query: 128 gtccacacggtatgcgcacaatgtaggctccggcactctcacccatcccctctccatcgt 187
| || ||||| |||||||||||||| || || ||||||||||| | |||||||| ||
Sbjct: 114065 gaccgcacggaatgcgcacaatgtacgcaccagcactctcaccgcttccctctccgtcag 114006
Query: 188 tggaaccggagcataacatctccgtcggctcaccatagctccagtccacgtcaggagatg 247
||||||||||| |||||| || || ||||| ||||||||||||||||| ||||||||||
Sbjct: 114005 tggaaccggaggttaacatttcagtaggctccccatagctccagtccacttcaggagatg 113946
Query: 248 acacttgacgagtgaagaggtccaccctgt 277
||||||||||||| || || ||||| ||||
Sbjct: 113945 acacttgacgagtaaacagatccactctgt 113916
>dbj|D45890.1|RICSPS1 Oryza sativa DNA for sucrose phosphate synthase, complete cds
Length = 9181
Score = 234 bits (118), Expect = 2e-059
Identities = 232/270 (85%)
Strand = Plus / Minus
Query: 8 tcccatttccaacctgttctcccagagccttggacatgttaaggatatgcgcaagagctc 67
||||||| | ||||||||| |||||||||||||||||||| ||||||||||| |||||||
Sbjct: 5024 tcccattgctaacctgttcccccagagccttggacatgttcaggatatgcgcgagagctc 4965
Query: 68 catcgacaaactcttggaggtaaggccacagtgcttccttcttgaggtatttatcccgtg 127
| ||||||||||||||||||||||||||||| || || || |||||| || |||| ||
Sbjct: 4964 cgtcgacaaactcttggaggtaaggccacagggcctctttacggaggtacttgtcccttg 4905
Query: 128 gtccacacggtatgcgcacaatgtaggctccggcactctcacccatcccctctccatcgt 187
| || ||||| |||||||||||||| || || ||||||||||| | |||||||| ||
Sbjct: 4904 gaccgcacggaatgcgcacaatgtacgcaccagcactctcaccgcttccctctccgtcag 4845
Query: 188 tggaaccggagcataacatctccgtcggctcaccatagctccagtccacgtcaggagatg 247
||||||||||| |||||| || || ||||| ||||||||||||||||| ||||||||||
Sbjct: 4844 tggaaccggaggttaacatttcagtaggctccccatagctccagtccacttcaggagatg 4785
Query: 248 acacttgacgagtgaagaggtccaccctgt 277
||||||||||||| || || ||||| ||||
Sbjct: 4784 acacttgacgagtaaacagatccactctgt 4755
>gb|AACV01002933.1| Oryza sativa (japonica cultivar-group) chromosome 1 Ctg002933, whole
genome shotgun sequence
Length = 31042
Score = 234 bits (118), Expect = 2e-059
Identities = 232/270 (85%)
Strand = Plus / Minus
Query: 8 tcccatttccaacctgttctcccagagccttggacatgttaaggatatgcgcaagagctc 67
||||||| | ||||||||| |||||||||||||||||||| ||||||||||| |||||||
Sbjct: 9437 tcccattgctaacctgttcccccagagccttggacatgttcaggatatgcgcgagagctc 9378
Query: 68 catcgacaaactcttggaggtaaggccacagtgcttccttcttgaggtatttatcccgtg 127
| ||||||||||||||||||||||||||||| || || || |||||| || |||| ||
Sbjct: 9377 cgtcgacaaactcttggaggtaaggccacagggcctctttacggaggtacttgtcccttg 9318
Query: 128 gtccacacggtatgcgcacaatgtaggctccggcactctcacccatcccctctccatcgt 187
| || ||||| |||||||||||||| || || ||||||||||| | |||||||| ||
Sbjct: 9317 gaccgcacggaatgcgcacaatgtacgcaccagcactctcaccgcttccctctccgtcag 9258
Query: 188 tggaaccggagcataacatctccgtcggctcaccatagctccagtccacgtcaggagatg 247
||||||||||| |||||| || || ||||| ||||||||||||||||| ||||||||||
Sbjct: 9257 tggaaccggaggttaacatttcagtaggctccccatagctccagtccacttcaggagatg 9198
Query: 248 acacttgacgagtgaagaggtccaccctgt 277
||||||||||||| || || ||||| ||||
Sbjct: 9197 acacttgacgagtaaacagatccactctgt 9168
>dbj|BA000010.8| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43342410
Score = 234 bits (118), Expect = 2e-059
Identities = 232/270 (85%)
Strand = Plus / Plus
Query: 8 tcccatttccaacctgttctcccagagccttggacatgttaaggatatgcgcaagagctc 67
||||||| | ||||||||| |||||||||||||||||||| ||||||||||| |||||||
Sbjct: 40178976 tcccattgctaacctgttcccccagagccttggacatgttcaggatatgcgcgagagctc 40179035
Query: 68 catcgacaaactcttggaggtaaggccacagtgcttccttcttgaggtatttatcccgtg 127
| ||||||||||||||||||||||||||||| || || || |||||| || |||| ||
Sbjct: 40179036 cgtcgacaaactcttggaggtaaggccacagggcctctttacggaggtacttgtcccttg 40179095
Query: 128 gtccacacggtatgcgcacaatgtaggctccggcactctcacccatcccctctccatcgt 187
| || ||||| |||||||||||||| || || ||||||||||| | |||||||| ||
Sbjct: 40179096 gaccgcacggaatgcgcacaatgtacgcaccagcactctcaccgcttccctctccgtcag 40179155
Query: 188 tggaaccggagcataacatctccgtcggctcaccatagctccagtccacgtcaggagatg 247
||||||||||| |||||| || || ||||| ||||||||||||||||| ||||||||||
Sbjct: 40179156 tggaaccggaggttaacatttcagtaggctccccatagctccagtccacttcaggagatg 40179215
Query: 248 acacttgacgagtgaagaggtccaccctgt 277
||||||||||||| || || ||||| ||||
Sbjct: 40179216 acacttgacgagtaaacagatccactctgt 40179245
>ref|XM_463619.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 3303
Score = 234 bits (118), Expect = 2e-059
Identities = 232/270 (85%)
Strand = Plus / Minus
Query: 8 tcccatttccaacctgttctcccagagccttggacatgttaaggatatgcgcaagagctc 67
||||||| | ||||||||| |||||||||||||||||||| ||||||||||| |||||||
Sbjct: 1033 tcccattgctaacctgttcccccagagccttggacatgttcaggatatgcgcgagagctc 974
Query: 68 catcgacaaactcttggaggtaaggccacagtgcttccttcttgaggtatttatcccgtg 127
| ||||||||||||||||||||||||||||| || || || |||||| || |||| ||
Sbjct: 973 cgtcgacaaactcttggaggtaaggccacagggcctctttacggaggtacttgtcccttg 914
Query: 128 gtccacacggtatgcgcacaatgtaggctccggcactctcacccatcccctctccatcgt 187
| || ||||| |||||||||||||| || || ||||||||||| | |||||||| ||
Sbjct: 913 gaccgcacggaatgcgcacaatgtacgcaccagcactctcaccgcttccctctccgtcag 854
Query: 188 tggaaccggagcataacatctccgtcggctcaccatagctccagtccacgtcaggagatg 247
||||||||||| |||||| || || ||||| ||||||||||||||||| ||||||||||
Sbjct: 853 tggaaccggaggttaacatttcagtaggctccccatagctccagtccacttcaggagatg 794
Query: 248 acacttgacgagtgaagaggtccaccctgt 277
||||||||||||| || || ||||| ||||
Sbjct: 793 acacttgacgagtaaacagatccactctgt 764
>ref|NT_079927.2| Oryza sativa (japonica cultivar-group)
Length = 14818989
Score = 234 bits (118), Expect = 2e-059
Identities = 232/270 (85%)
Strand = Plus / Plus
Query: 8 tcccatttccaacctgttctcccagagccttggacatgttaaggatatgcgcaagagctc 67
||||||| | ||||||||| |||||||||||||||||||| ||||||||||| |||||||
Sbjct: 14626359 tcccattgctaacctgttcccccagagccttggacatgttcaggatatgcgcgagagctc 14626418
Query: 68 catcgacaaactcttggaggtaaggccacagtgcttccttcttgaggtatttatcccgtg 127
| ||||||||||||||||||||||||||||| || || || |||||| || |||| ||
Sbjct: 14626419 cgtcgacaaactcttggaggtaaggccacagggcctctttacggaggtacttgtcccttg 14626478
Query: 128 gtccacacggtatgcgcacaatgtaggctccggcactctcacccatcccctctccatcgt 187
| || ||||| |||||||||||||| || || ||||||||||| | |||||||| ||
Sbjct: 14626479 gaccgcacggaatgcgcacaatgtacgcaccagcactctcaccgcttccctctccgtcag 14626538
Query: 188 tggaaccggagcataacatctccgtcggctcaccatagctccagtccacgtcaggagatg 247
||||||||||| |||||| || || ||||| ||||||||||||||||| ||||||||||
Sbjct: 14626539 tggaaccggaggttaacatttcagtaggctccccatagctccagtccacttcaggagatg 14626598
Query: 248 acacttgacgagtgaagaggtccaccctgt 277
||||||||||||| || || ||||| ||||
Sbjct: 14626599 acacttgacgagtaaacagatccactctgt 14626628
>dbj|AP003437.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
clone:P0678F11
Length = 154292
Score = 234 bits (118), Expect = 2e-059
Identities = 232/270 (85%)
Strand = Plus / Plus
Query: 8 tcccatttccaacctgttctcccagagccttggacatgttaaggatatgcgcaagagctc 67
||||||| | ||||||||| |||||||||||||||||||| ||||||||||| |||||||
Sbjct: 41390 tcccattgctaacctgttcccccagagccttggacatgttcaggatatgcgcgagagctc 41449
Query: 68 catcgacaaactcttggaggtaaggccacagtgcttccttcttgaggtatttatcccgtg 127
| ||||||||||||||||||||||||||||| || || || |||||| || |||| ||
Sbjct: 41450 cgtcgacaaactcttggaggtaaggccacagggcctctttacggaggtacttgtcccttg 41509
Query: 128 gtccacacggtatgcgcacaatgtaggctccggcactctcacccatcccctctccatcgt 187
| || ||||| |||||||||||||| || || ||||||||||| | |||||||| ||
Sbjct: 41510 gaccgcacggaatgcgcacaatgtacgcaccagcactctcaccgcttccctctccgtcag 41569
Query: 188 tggaaccggagcataacatctccgtcggctcaccatagctccagtccacgtcaggagatg 247
||||||||||| |||||| || || ||||| ||||||||||||||||| ||||||||||
Sbjct: 41570 tggaaccggaggttaacatttcagtaggctccccatagctccagtccacttcaggagatg 41629
Query: 248 acacttgacgagtgaagaggtccaccctgt 277
||||||||||||| || || ||||| ||||
Sbjct: 41630 acacttgacgagtaaacagatccactctgt 41659
>gb|CH401168.1| Oryza sativa (japonica cultivar-group) chromosome 1 scaffold000005 genomic
scaffold, whole genome shotgun sequence
Length = 17394610
Score = 234 bits (118), Expect = 2e-059
Identities = 232/270 (85%)
Strand = Plus / Plus
Query: 8 tcccatttccaacctgttctcccagagccttggacatgttaaggatatgcgcaagagctc 67
||||||| | ||||||||| |||||||||||||||||||| ||||||||||| |||||||
Sbjct: 14386597 tcccattgctaacctgttcccccagagccttggacatgttcaggatatgcgcgagagctc 14386656
Query: 68 catcgacaaactcttggaggtaaggccacagtgcttccttcttgaggtatttatcccgtg 127
| ||||||||||||||||||||||||||||| || || || |||||| || |||| ||
Sbjct: 14386657 cgtcgacaaactcttggaggtaaggccacagggcctctttacggaggtacttgtcccttg 14386716
Query: 128 gtccacacggtatgcgcacaatgtaggctccggcactctcacccatcccctctccatcgt 187
| || ||||| |||||||||||||| || || ||||||||||| | |||||||| ||
Sbjct: 14386717 gaccgcacggaatgcgcacaatgtacgcaccagcactctcaccgcttccctctccgtcag 14386776
Query: 188 tggaaccggagcataacatctccgtcggctcaccatagctccagtccacgtcaggagatg 247
||||||||||| |||||| || || ||||| ||||||||||||||||| ||||||||||
Sbjct: 14386777 tggaaccggaggttaacatttcagtaggctccccatagctccagtccacttcaggagatg 14386836
Query: 248 acacttgacgagtgaagaggtccaccctgt 277
||||||||||||| || || ||||| ||||
Sbjct: 14386837 acacttgacgagtaaacagatccactctgt 14386866
>gb|CM000138.1| Oryza sativa (japonica cultivar-group) chromosome 1, whole genome shotgun
sequence
Length = 42596331
Score = 234 bits (118), Expect = 2e-059
Identities = 232/270 (85%)
Strand = Plus / Plus
Query: 8 tcccatttccaacctgttctcccagagccttggacatgttaaggatatgcgcaagagctc 67
||||||| | ||||||||| |||||||||||||||||||| ||||||||||| |||||||
Sbjct: 39588318 tcccattgctaacctgttcccccagagccttggacatgttcaggatatgcgcgagagctc 39588377
Query: 68 catcgacaaactcttggaggtaaggccacagtgcttccttcttgaggtatttatcccgtg 127
| ||||||||||||||||||||||||||||| || || || |||||| || |||| ||
Sbjct: 39588378 cgtcgacaaactcttggaggtaaggccacagggcctctttacggaggtacttgtcccttg 39588437
Query: 128 gtccacacggtatgcgcacaatgtaggctccggcactctcacccatcccctctccatcgt 187
| || ||||| |||||||||||||| || || ||||||||||| | |||||||| ||
Sbjct: 39588438 gaccgcacggaatgcgcacaatgtacgcaccagcactctcaccgcttccctctccgtcag 39588497
Query: 188 tggaaccggagcataacatctccgtcggctcaccatagctccagtccacgtcaggagatg 247
||||||||||| |||||| || || ||||| ||||||||||||||||| ||||||||||
Sbjct: 39588498 tggaaccggaggttaacatttcagtaggctccccatagctccagtccacttcaggagatg 39588557
Query: 248 acacttgacgagtgaagaggtccaccctgt 277
||||||||||||| || || ||||| ||||
Sbjct: 39588558 acacttgacgagtaaacagatccactctgt 39588587
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43261740
Score = 234 bits (118), Expect = 2e-059
Identities = 232/270 (85%)
Strand = Plus / Plus
Query: 8 tcccatttccaacctgttctcccagagccttggacatgttaaggatatgcgcaagagctc 67
||||||| | ||||||||| |||||||||||||||||||| ||||||||||| |||||||
Sbjct: 40098306 tcccattgctaacctgttcccccagagccttggacatgttcaggatatgcgcgagagctc 40098365
Query: 68 catcgacaaactcttggaggtaaggccacagtgcttccttcttgaggtatttatcccgtg 127
| ||||||||||||||||||||||||||||| || || || |||||| || |||| ||
Sbjct: 40098366 cgtcgacaaactcttggaggtaaggccacagggcctctttacggaggtacttgtcccttg 40098425
Query: 128 gtccacacggtatgcgcacaatgtaggctccggcactctcacccatcccctctccatcgt 187
| || ||||| |||||||||||||| || || ||||||||||| | |||||||| ||
Sbjct: 40098426 gaccgcacggaatgcgcacaatgtacgcaccagcactctcaccgcttccctctccgtcag 40098485
Query: 188 tggaaccggagcataacatctccgtcggctcaccatagctccagtccacgtcaggagatg 247
||||||||||| |||||| || || ||||| ||||||||||||||||| ||||||||||
Sbjct: 40098486 tggaaccggaggttaacatttcagtaggctccccatagctccagtccacttcaggagatg 40098545
Query: 248 acacttgacgagtgaagaggtccaccctgt 277
||||||||||||| || || ||||| ||||
Sbjct: 40098546 acacttgacgagtaaacagatccactctgt 40098575
>dbj|AK121341.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023120M11, full
insert sequence
Length = 3825
Score = 232 bits (117), Expect = 8e-059
Identities = 219/253 (86%)
Strand = Plus / Minus
Query: 8 tcccatttccaacctgttctcccagagccttggacatgttaaggatatgcgcaagagctc 67
||||||| | ||||||||| |||||||||||||||||||| ||||||||||| |||||||
Sbjct: 1216 tcccattgctaacctgttcccccagagccttggacatgttcaggatatgcgcgagagctc 1157
Query: 68 catcgacaaactcttggaggtaaggccacagtgcttccttcttgaggtatttatcccgtg 127
| ||||||||||||||||||||||||||||| || || || |||||| || |||| ||
Sbjct: 1156 cgtcgacaaactcttggaggtaaggccacagggcctctttacggaggtacttgtcccttg 1097
Query: 128 gtccacacggtatgcgcacaatgtaggctccggcactctcacccatcccctctccatcgt 187
| || ||||| |||||||||||||| || || ||||||||||| | |||||||| ||
Sbjct: 1096 gaccgcacggaatgcgcacaatgtacgcaccagcactctcaccgcttccctctccgtcag 1037
Query: 188 tggaaccggagcataacatctccgtcggctcaccatagctccagtccacgtcaggagatg 247
||||||||||| |||||| || || ||||| ||||||||||||||||| ||||||||||
Sbjct: 1036 tggaaccggaggttaacatttcagtaggctccccatagctccagtccacttcaggagatg 977
Query: 248 acacttgacgagt 260
|||||||||||||
Sbjct: 976 acacttgacgagt 964
>dbj|AG023731.1| Oryza sativa (japonica cultivar-group) DNA, clone:ND2003_0_102_1A,
3' flanking sequence of Tos17 insertion in rice strain
ND2003, genomic survey sequence
Length = 481
Score = 188 bits (95), Expect = 1e-045
Identities = 193/226 (85%)
Strand = Plus / Minus
Query: 8 tcccatttccaacctgttctcccagagccttggacatgttaaggatatgcgcaagagctc 67
||||||| | ||||||||| |||||||||||||||||||| ||||||||||| |||||||
Sbjct: 226 tcccattgctaacctgttcccccagagccttggacatgttcaggatatgcgcgagagctc 167
Query: 68 catcgacaaactcttggaggtaaggccacagtgcttccttcttgaggtatttatcccgtg 127
| ||||||||||||||||||||||||||||| || || || |||||| || |||| ||
Sbjct: 166 cgtcgacaaactcttggaggtaaggccacagggcctctttacggaggtacttgtcccttg 107
Query: 128 gtccacacggtatgcgcacaatgtaggctccggcactctcacccatcccctctccatcgt 187
| || ||||| |||||||||||||| || || ||||||||||| | |||||||| ||
Sbjct: 106 gaccgcacggaatgcgcacaatgtacgcaccagcactctcaccgnttccctctccgtcag 47
Query: 188 tggaaccggagcataacatctccgtcggctcaccatagctccagtc 233
||||||||||| |||||| || || ||||| ||||||||||||||
Sbjct: 46 tggaaccggaggttaacatttcagtaggctccccatagctccagtc 1
>dbj|AG205918.1| Oryza sativa (japonica cultivar-group) DNA, clone:NE7015_0_103_1A,
3' flanking sequence of Tos17 insertion in rice strain
NE7015, genomic survey sequence
Length = 627
Score = 186 bits (94), Expect = 4e-045
Identities = 193/226 (85%)
Strand = Plus / Minus
Query: 8 tcccatttccaacctgttctcccagagccttggacatgttaaggatatgcgcaagagctc 67
||||||| | ||||||||| |||||||||||||||||||| ||||||||||| |||||||
Sbjct: 226 tcccattgctaacctgttcccccagagccttggacatgttcaggatatgcgcgagagctc 167
Query: 68 catcgacaaactcttggaggtaaggccacagtgcttccttcttgaggtatttatcccgtg 127
| ||||||||||||||||||||||||||||| || || || |||||| || |||| ||
Sbjct: 166 cgtcgacaaactcttggaggtaaggccacagggcctctttacggaggtacttgtcccttg 107
Query: 128 gtccacacggtatgcgcacaatgtaggctccggcactctcacccatcccctctccatcgt 187
| || ||||| |||||||||||||| || || ||||||||||| | |||||||| ||
Sbjct: 106 gaccgcacggaatgcgcacaatgtacgcaccagcactctcaccgcttccctctccgtcag 47
Query: 188 tggaaccggagcataacatctccgtcggctcaccatagctccagtc 233
||||||||||| |||||| || || ||||| ||||||||||||||
Sbjct: 46 tggaaccggaggttaacatttcagtaggctccccatagctccagtc 1
>dbj|AG213996.1| Oryza sativa (japonica cultivar-group) DNA, clone:T12049T, 3'
flanking sequence of Tos17 insertion in rice strain
ND9050, genomic survey sequence
Length = 513
Score = 133 bits (67), Expect = 5e-029
Identities = 85/91 (93%)
Strand = Plus / Minus
Query: 8 tcccatttccaacctgttctcccagagccttggacatgttaaggatatgcgcaagagctc 67
||||||| | ||||||||| |||||||||||||||||||| ||||||||||| |||||||
Sbjct: 114 tcccattgctaacctgttcccccagagccttggacatgttcaggatatgcgcgagagctc 55
Query: 68 catcgacaaactcttggaggtaaggccacag 98
| |||||||||||||||||||||||||||||
Sbjct: 54 cgtcgacaaactcttggaggtaaggccacag 24
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 276,700
Number of Sequences: 438736
Number of extensions: 276700
Number of successful extensions: 4458
Number of sequences better than 0.5: 15
Number of HSP's better than 0.5 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 4384
Number of HSP's gapped (non-prelim): 60
length of query: 277
length of database: 2,800,419,916
effective HSP length: 20
effective length of query: 257
effective length of database: 2,791,645,196
effective search space: 717452815372
effective search space used: 717452815372
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)