BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QBTB.068P22F020924.3.1
(714 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BP184906.1|BP184906 BP184906 pNS rice callus cDNA Oryza ... 151 6e-034
dbj|AP002862.2| Oryza sativa (japonica cultivar-group) geno... 151 6e-034
gb|AACV01000709.1| Oryza sativa (japonica cultivar-group) c... 151 6e-034
dbj|BA000010.8| Oryza sativa (japonica cultivar-group) geno... 151 6e-034
ref|NT_036312.3| Oryza sativa (japonica cultivar-group) 151 6e-034
dbj|AP000815.1| Oryza sativa (japonica cultivar-group) geno... 151 6e-034
dbj|AP003103.2| Oryza sativa (japonica cultivar-group) geno... 151 6e-034
gb|CH401164.1| Oryza sativa (japonica cultivar-group) chrom... 151 6e-034
gb|CM000138.1| Oryza sativa (japonica cultivar-group) chrom... 151 6e-034
dbj|AP008207.1| Oryza sativa (japonica cultivar-group) geno... 151 6e-034
ref|NM_188133.1| Oryza sativa (japonica cultivar-group), Oz... 149 2e-033
gb|CF330500.1|CF330500 NACL--06-D21.g1 Rice callus plasmid ... 137 9e-030
dbj|AK069158.1| Oryza sativa (japonica cultivar-group) cDNA... 125 3e-026
gb|AY620415.1| Oryza sativa (japonica cultivar-group) clone... 125 3e-026
ref|NM_191013.1| Oryza sativa (japonica cultivar-group), p... 125 3e-026
gb|CF322658.1|CF322658 HDN--01-L06.g1 OsHDAC1-overexpressin... 86 3e-014
gb|CB644376.1|CB644376 OSJNEb05I24.f OSJNEb Oryza sativa (j... 68 7e-009
gb|CB668104.1|CB668104 OSJNEd15M18.f OSJNEd Oryza sativa (j... 68 7e-009
gb|CB676771.1|CB676771 OSJNEe13D11.f OSJNEe Oryza sativa (j... 68 7e-009
dbj|AK100440.1| Oryza sativa (japonica cultivar-group) cDNA... 68 7e-009
ref|XM_479605.1| Oryza sativa (japonica cultivar-group), mRNA 68 7e-009
gb|CB658983.1|CB658983 OSJNEc15I02.f OSJNEc Oryza sativa (j... 66 3e-008
gb|CB654949.1|CB654949 OSJNEc07O05.f OSJNEc Oryza sativa (j... 64 1e-007
gb|CB655035.1|CB655035 OSJNEc08A23.f OSJNEc Oryza sativa (j... 64 1e-007
gb|CB655356.1|CB655356 OSJNEc08K18.f OSJNEc Oryza sativa (j... 64 1e-007
gb|CB658954.1|CB658954 OSJNEc15H07.f OSJNEc Oryza sativa (j... 64 1e-007
gb|CB667999.1|CB667999 OSJNEd15K01.f OSJNEd Oryza sativa (j... 64 1e-007
gb|AY620414.1| Oryza sativa (japonica cultivar-group) clone... 64 1e-007
gb|CL520606.1|CL520606 MUL5E05 Flanking Sequence Tag of Ory... 58 7e-006
gb|CF324524.1|CF324524 HDN--06-M07.g1 OsHDAC1-overexpressin... 58 7e-006
gb|AC119748.1| Genomic sequence for Oryza sativa, Nipponbar... 56 3e-005
gb|AACV01002546.1| Oryza sativa (japonica cultivar-group) c... 56 3e-005
gb|AACV01006493.1| Oryza sativa (japonica cultivar-group) c... 56 3e-005
ref|NT_079927.2| Oryza sativa (japonica cultivar-group) 56 3e-005
ref|NT_107192.1| Oryza sativa (japonica cultivar-group) 56 3e-005
dbj|AP003073.2| Oryza sativa (japonica cultivar-group) geno... 56 3e-005
gb|CH401173.1| Oryza sativa (japonica cultivar-group) chrom... 56 3e-005
gb|CH401168.1| Oryza sativa (japonica cultivar-group) chrom... 56 3e-005
gb|CM000140.1| Oryza sativa (japonica cultivar-group) chrom... 56 3e-005
dbj|AP008209.1| Oryza sativa (japonica cultivar-group) geno... 56 3e-005
gb|DP000009.1| Oryza sativa (japonica cultivar-group) chrom... 56 3e-005
gb|AQ157293.1|AQ157293 nbxb0009A10r CUGI Rice BAC Library O... 48 0.007
gb|AQ272169.1|AQ272169 nbxb0027J07f CUGI Rice BAC Library O... 44 0.10
dbj|AK109719.1| Oryza sativa (japonica cultivar-group) cDNA... 44 0.10
dbj|AP003813.4| Oryza sativa (japonica cultivar-group) geno... 44 0.10
gb|AACV01017047.1| Oryza sativa (japonica cultivar-group) c... 44 0.10
dbj|AP003816.2| Oryza sativa (japonica cultivar-group) geno... 44 0.10
ref|NT_079899.2| Oryza sativa (japonica cultivar-group) 44 0.10
gb|CH401226.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.10
gb|CM000144.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.10
dbj|AP008213.1| Oryza sativa (japonica cultivar-group) geno... 44 0.10
>gb|BP184906.1|BP184906 BP184906 pNS rice callus cDNA Oryza sativa (japonica
cultivar-group) cDNA clone 23C4AB002, mRNA sequence
Length = 677
Score = 151 bits (76), Expect = 6e-034
Identities = 169/200 (84%)
Strand = Plus / Plus
Query: 515 ggggcatcggcctttgatatggagtatgcgaggtggttggaagagcacaatcggcaaatt 574
||||||| ||| ||||||||||||||||| | ||||||||||| |||||| ||||||||
Sbjct: 24 ggggcattggcttttgatatggagtatgcacgttggttggaagaacacaataggcaaatt 83
Query: 575 agtgaactaagggctggtgtcagtgctcatgcaagtgatactgatcttcgaagtgttgtt 634
| ||| |||||| ||| |||| |||||||||| |||||| ||| || || ||||||||
Sbjct: 84 aatgagctaaggtctgcagtcaatgctcatgcaggtgataatgagctccgtggtgttgtt 143
Query: 635 gataagatcatgtcacactatgatgagatttttaggctcaaaggcaatgcagccaaggca 694
|| |||||||||||||||||||| |||||||| | || ||||| ||||| ||||| |||
Sbjct: 144 gacaagatcatgtcacactatgaggagattttcaagcagaaaggaaatgcggccaaagca 203
Query: 695 gatgtttttcacgtcttatc 714
||||| ||||| || |||||
Sbjct: 204 gatgtctttcatgtgttatc 223
>dbj|AP002862.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
clone:OSJNBa0036E02
Length = 145931
Score = 151 bits (76), Expect = 6e-034
Identities = 169/200 (84%)
Strand = Plus / Plus
Query: 515 ggggcatcggcctttgatatggagtatgcgaggtggttggaagagcacaatcggcaaatt 574
||||||| ||| ||||||||||||||||| | ||||||||||| |||||| ||||||||
Sbjct: 27869 ggggcattggcttttgatatggagtatgcacgttggttggaagaacacaataggcaaatt 27928
Query: 575 agtgaactaagggctggtgtcagtgctcatgcaagtgatactgatcttcgaagtgttgtt 634
| ||| |||||| ||| |||| |||||||||| |||||| ||| || || ||||||||
Sbjct: 27929 aatgagctaaggtctgcagtcaatgctcatgcaggtgataatgagctccgtggtgttgtt 27988
Query: 635 gataagatcatgtcacactatgatgagatttttaggctcaaaggcaatgcagccaaggca 694
|| |||||||||||||||||||| |||||||| | || ||||| ||||| ||||| |||
Sbjct: 27989 gacaagatcatgtcacactatgaggagattttcaagcagaaaggaaatgcggccaaagca 28048
Query: 695 gatgtttttcacgtcttatc 714
||||| ||||| || |||||
Sbjct: 28049 gatgtctttcatgtgttatc 28068
Score = 105 bits (53), Expect = 3e-020
Identities = 74/81 (91%)
Strand = Plus / Plus
Query: 384 aggcatatgttcaacagttggagaatagcaggctaaaacttacccaactagagcaagagc 443
|||||||||||||||| |||||||||||||||||||| ||||| |||||||| |||||
Sbjct: 27509 aggcatatgttcaacaattggagaatagcaggctaaagcttacacaactagaacaagaat 27568
Query: 444 tgcaaagagctcgtcagcagg 464
||||| |||||||||||||||
Sbjct: 27569 tgcaacgagctcgtcagcagg 27589
Score = 58.0 bits (29), Expect = 7e-006
Identities = 44/49 (89%)
Strand = Plus / Plus
Query: 186 ttacaatggcagatgccagccctagaacagaaacatcaacagatgatac 234
|||||||||||||| |||||||| ||||| |||||||||||||||||
Sbjct: 23968 ttacaatggcagatatgagccctaggacagatacatcaacagatgatac 24016
Score = 56.0 bits (28), Expect = 3e-005
Identities = 49/56 (87%)
Strand = Plus / Plus
Query: 461 cagggcatttttatatctagttcagttgatcagtcacactccatgagtggaaatgg 516
||||||||||||||||| || ||||| || ||| | || |||||||||||||||||
Sbjct: 27667 cagggcatttttatatccagctcagtggaccagactcattccatgagtggaaatgg 27722
Score = 54.0 bits (27), Expect = 1e-004
Identities = 44/49 (89%), Gaps = 3/49 (6%)
Strand = Plus / Plus
Query: 277 tgcttctgactccagtgacagatccaaagacaaacatggagatcaaaag 325
|||||||||||| |||||||||||| |||||||||| ||||||||||
Sbjct: 25338 tgcttctgactc---tgacagatccaaggacaaacatgaagatcaaaag 25383
Score = 52.0 bits (26), Expect = 4e-004
Identities = 41/46 (89%)
Strand = Plus / Plus
Query: 324 agacattgcgccgccttgctcaaaatcgtgaggctgcaaggaagag 369
|||||||||| || || || |||||||| |||||||||||||||||
Sbjct: 25462 agacattgcgtcggctcgcccaaaatcgcgaggctgcaaggaagag 25507
>gb|AACV01000709.1| Oryza sativa (japonica cultivar-group) chromosome 1 Ctg000709, whole
genome shotgun sequence
Length = 25547
Score = 151 bits (76), Expect = 6e-034
Identities = 169/200 (84%)
Strand = Plus / Minus
Query: 515 ggggcatcggcctttgatatggagtatgcgaggtggttggaagagcacaatcggcaaatt 574
||||||| ||| ||||||||||||||||| | ||||||||||| |||||| ||||||||
Sbjct: 5167 ggggcattggcttttgatatggagtatgcacgttggttggaagaacacaataggcaaatt 5108
Query: 575 agtgaactaagggctggtgtcagtgctcatgcaagtgatactgatcttcgaagtgttgtt 634
| ||| |||||| ||| |||| |||||||||| |||||| ||| || || ||||||||
Sbjct: 5107 aatgagctaaggtctgcagtcaatgctcatgcaggtgataatgagctccgtggtgttgtt 5048
Query: 635 gataagatcatgtcacactatgatgagatttttaggctcaaaggcaatgcagccaaggca 694
|| |||||||||||||||||||| |||||||| | || ||||| ||||| ||||| |||
Sbjct: 5047 gacaagatcatgtcacactatgaggagattttcaagcagaaaggaaatgcggccaaagca 4988
Query: 695 gatgtttttcacgtcttatc 714
||||| ||||| || |||||
Sbjct: 4987 gatgtctttcatgtgttatc 4968
Score = 105 bits (53), Expect = 3e-020
Identities = 74/81 (91%)
Strand = Plus / Minus
Query: 384 aggcatatgttcaacagttggagaatagcaggctaaaacttacccaactagagcaagagc 443
|||||||||||||||| |||||||||||||||||||| ||||| |||||||| |||||
Sbjct: 5527 aggcatatgttcaacaattggagaatagcaggctaaagcttacacaactagaacaagaat 5468
Query: 444 tgcaaagagctcgtcagcagg 464
||||| |||||||||||||||
Sbjct: 5467 tgcaacgagctcgtcagcagg 5447
Score = 58.0 bits (29), Expect = 7e-006
Identities = 44/49 (89%)
Strand = Plus / Minus
Query: 186 ttacaatggcagatgccagccctagaacagaaacatcaacagatgatac 234
|||||||||||||| |||||||| ||||| |||||||||||||||||
Sbjct: 9068 ttacaatggcagatatgagccctaggacagatacatcaacagatgatac 9020
Score = 56.0 bits (28), Expect = 3e-005
Identities = 49/56 (87%)
Strand = Plus / Minus
Query: 461 cagggcatttttatatctagttcagttgatcagtcacactccatgagtggaaatgg 516
||||||||||||||||| || ||||| || ||| | || |||||||||||||||||
Sbjct: 5369 cagggcatttttatatccagctcagtggaccagactcattccatgagtggaaatgg 5314
Score = 54.0 bits (27), Expect = 1e-004
Identities = 44/49 (89%), Gaps = 3/49 (6%)
Strand = Plus / Minus
Query: 277 tgcttctgactccagtgacagatccaaagacaaacatggagatcaaaag 325
|||||||||||| |||||||||||| |||||||||| ||||||||||
Sbjct: 7698 tgcttctgactc---tgacagatccaaggacaaacatgaagatcaaaag 7653
Score = 52.0 bits (26), Expect = 4e-004
Identities = 41/46 (89%)
Strand = Plus / Minus
Query: 324 agacattgcgccgccttgctcaaaatcgtgaggctgcaaggaagag 369
|||||||||| || || || |||||||| |||||||||||||||||
Sbjct: 7574 agacattgcgtcggctcgcccaaaatcgcgaggctgcaaggaagag 7529
>dbj|BA000010.8| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43342410
Score = 151 bits (76), Expect = 6e-034
Identities = 169/200 (84%)
Strand = Plus / Plus
Query: 515 ggggcatcggcctttgatatggagtatgcgaggtggttggaagagcacaatcggcaaatt 574
||||||| ||| ||||||||||||||||| | ||||||||||| |||||| ||||||||
Sbjct: 9931158 ggggcattggcttttgatatggagtatgcacgttggttggaagaacacaataggcaaatt 9931217
Query: 575 agtgaactaagggctggtgtcagtgctcatgcaagtgatactgatcttcgaagtgttgtt 634
| ||| |||||| ||| |||| |||||||||| |||||| ||| || || ||||||||
Sbjct: 9931218 aatgagctaaggtctgcagtcaatgctcatgcaggtgataatgagctccgtggtgttgtt 9931277
Query: 635 gataagatcatgtcacactatgatgagatttttaggctcaaaggcaatgcagccaaggca 694
|| |||||||||||||||||||| |||||||| | || ||||| ||||| ||||| |||
Sbjct: 9931278 gacaagatcatgtcacactatgaggagattttcaagcagaaaggaaatgcggccaaagca 9931337
Query: 695 gatgtttttcacgtcttatc 714
||||| ||||| || |||||
Sbjct: 9931338 gatgtctttcatgtgttatc 9931357
Score = 105 bits (53), Expect = 3e-020
Identities = 74/81 (91%)
Strand = Plus / Plus
Query: 384 aggcatatgttcaacagttggagaatagcaggctaaaacttacccaactagagcaagagc 443
|||||||||||||||| |||||||||||||||||||| ||||| |||||||| |||||
Sbjct: 9930798 aggcatatgttcaacaattggagaatagcaggctaaagcttacacaactagaacaagaat 9930857
Query: 444 tgcaaagagctcgtcagcagg 464
||||| |||||||||||||||
Sbjct: 9930858 tgcaacgagctcgtcagcagg 9930878
Score = 58.0 bits (29), Expect = 7e-006
Identities = 44/49 (89%)
Strand = Plus / Plus
Query: 186 ttacaatggcagatgccagccctagaacagaaacatcaacagatgatac 234
|||||||||||||| |||||||| ||||| |||||||||||||||||
Sbjct: 9927257 ttacaatggcagatatgagccctaggacagatacatcaacagatgatac 9927305
Score = 56.0 bits (28), Expect = 3e-005
Identities = 58/68 (85%)
Strand = Plus / Minus
Query: 319 tcaaaagacattgcgccgccttgctcaaaatcgtgaggctgcaaggaagagccgactaag 378
|||| ||||| | ||||||||||| ||||||||||| ||||| ||||| ||||| ||||
Sbjct: 34384395 tcaacagacacttcgccgccttgcccaaaatcgtgaagctgctaggaaaagccgtttaag 34384336
Query: 379 gaagaagg 386
|||||||
Sbjct: 34384335 aaagaagg 34384328
Score = 56.0 bits (28), Expect = 3e-005
Identities = 49/56 (87%)
Strand = Plus / Plus
Query: 461 cagggcatttttatatctagttcagttgatcagtcacactccatgagtggaaatgg 516
||||||||||||||||| || ||||| || ||| | || |||||||||||||||||
Sbjct: 9930956 cagggcatttttatatccagctcagtggaccagactcattccatgagtggaaatgg 9931011
Score = 54.0 bits (27), Expect = 1e-004
Identities = 44/49 (89%), Gaps = 3/49 (6%)
Strand = Plus / Plus
Query: 277 tgcttctgactccagtgacagatccaaagacaaacatggagatcaaaag 325
|||||||||||| |||||||||||| |||||||||| ||||||||||
Sbjct: 9928627 tgcttctgactc---tgacagatccaaggacaaacatgaagatcaaaag 9928672
Score = 52.0 bits (26), Expect = 4e-004
Identities = 41/46 (89%)
Strand = Plus / Plus
Query: 324 agacattgcgccgccttgctcaaaatcgtgaggctgcaaggaagag 369
|||||||||| || || || |||||||| |||||||||||||||||
Sbjct: 9928751 agacattgcgtcggctcgcccaaaatcgcgaggctgcaaggaagag 9928796
>ref|NT_036312.3| Oryza sativa (japonica cultivar-group)
Length = 10050053
Score = 151 bits (76), Expect = 6e-034
Identities = 169/200 (84%)
Strand = Plus / Plus
Query: 515 ggggcatcggcctttgatatggagtatgcgaggtggttggaagagcacaatcggcaaatt 574
||||||| ||| ||||||||||||||||| | ||||||||||| |||||| ||||||||
Sbjct: 9930998 ggggcattggcttttgatatggagtatgcacgttggttggaagaacacaataggcaaatt 9931057
Query: 575 agtgaactaagggctggtgtcagtgctcatgcaagtgatactgatcttcgaagtgttgtt 634
| ||| |||||| ||| |||| |||||||||| |||||| ||| || || ||||||||
Sbjct: 9931058 aatgagctaaggtctgcagtcaatgctcatgcaggtgataatgagctccgtggtgttgtt 9931117
Query: 635 gataagatcatgtcacactatgatgagatttttaggctcaaaggcaatgcagccaaggca 694
|| |||||||||||||||||||| |||||||| | || ||||| ||||| ||||| |||
Sbjct: 9931118 gacaagatcatgtcacactatgaggagattttcaagcagaaaggaaatgcggccaaagca 9931177
Query: 695 gatgtttttcacgtcttatc 714
||||| ||||| || |||||
Sbjct: 9931178 gatgtctttcatgtgttatc 9931197
Score = 105 bits (53), Expect = 3e-020
Identities = 74/81 (91%)
Strand = Plus / Plus
Query: 384 aggcatatgttcaacagttggagaatagcaggctaaaacttacccaactagagcaagagc 443
|||||||||||||||| |||||||||||||||||||| ||||| |||||||| |||||
Sbjct: 9930638 aggcatatgttcaacaattggagaatagcaggctaaagcttacacaactagaacaagaat 9930697
Query: 444 tgcaaagagctcgtcagcagg 464
||||| |||||||||||||||
Sbjct: 9930698 tgcaacgagctcgtcagcagg 9930718
Score = 58.0 bits (29), Expect = 7e-006
Identities = 44/49 (89%)
Strand = Plus / Plus
Query: 186 ttacaatggcagatgccagccctagaacagaaacatcaacagatgatac 234
|||||||||||||| |||||||| ||||| |||||||||||||||||
Sbjct: 9927097 ttacaatggcagatatgagccctaggacagatacatcaacagatgatac 9927145
Score = 56.0 bits (28), Expect = 3e-005
Identities = 49/56 (87%)
Strand = Plus / Plus
Query: 461 cagggcatttttatatctagttcagttgatcagtcacactccatgagtggaaatgg 516
||||||||||||||||| || ||||| || ||| | || |||||||||||||||||
Sbjct: 9930796 cagggcatttttatatccagctcagtggaccagactcattccatgagtggaaatgg 9930851
Score = 54.0 bits (27), Expect = 1e-004
Identities = 44/49 (89%), Gaps = 3/49 (6%)
Strand = Plus / Plus
Query: 277 tgcttctgactccagtgacagatccaaagacaaacatggagatcaaaag 325
|||||||||||| |||||||||||| |||||||||| ||||||||||
Sbjct: 9928467 tgcttctgactc---tgacagatccaaggacaaacatgaagatcaaaag 9928512
Score = 52.0 bits (26), Expect = 4e-004
Identities = 41/46 (89%)
Strand = Plus / Plus
Query: 324 agacattgcgccgccttgctcaaaatcgtgaggctgcaaggaagag 369
|||||||||| || || || |||||||| |||||||||||||||||
Sbjct: 9928591 agacattgcgtcggctcgcccaaaatcgcgaggctgcaaggaagag 9928636
>dbj|AP000815.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1,
clone:P0003H10
Length = 142418
Score = 151 bits (76), Expect = 6e-034
Identities = 169/200 (84%)
Strand = Plus / Plus
Query: 515 ggggcatcggcctttgatatggagtatgcgaggtggttggaagagcacaatcggcaaatt 574
||||||| ||| ||||||||||||||||| | ||||||||||| |||||| ||||||||
Sbjct: 69142 ggggcattggcttttgatatggagtatgcacgttggttggaagaacacaataggcaaatt 69201
Query: 575 agtgaactaagggctggtgtcagtgctcatgcaagtgatactgatcttcgaagtgttgtt 634
| ||| |||||| ||| |||| |||||||||| |||||| ||| || || ||||||||
Sbjct: 69202 aatgagctaaggtctgcagtcaatgctcatgcaggtgataatgagctccgtggtgttgtt 69261
Query: 635 gataagatcatgtcacactatgatgagatttttaggctcaaaggcaatgcagccaaggca 694
|| |||||||||||||||||||| |||||||| | || ||||| ||||| ||||| |||
Sbjct: 69262 gacaagatcatgtcacactatgaggagattttcaagcagaaaggaaatgcggccaaagca 69321
Query: 695 gatgtttttcacgtcttatc 714
||||| ||||| || |||||
Sbjct: 69322 gatgtctttcatgtgttatc 69341
Score = 105 bits (53), Expect = 3e-020
Identities = 74/81 (91%)
Strand = Plus / Plus
Query: 384 aggcatatgttcaacagttggagaatagcaggctaaaacttacccaactagagcaagagc 443
|||||||||||||||| |||||||||||||||||||| ||||| |||||||| |||||
Sbjct: 68782 aggcatatgttcaacaattggagaatagcaggctaaagcttacacaactagaacaagaat 68841
Query: 444 tgcaaagagctcgtcagcagg 464
||||| |||||||||||||||
Sbjct: 68842 tgcaacgagctcgtcagcagg 68862
Score = 58.0 bits (29), Expect = 7e-006
Identities = 44/49 (89%)
Strand = Plus / Plus
Query: 186 ttacaatggcagatgccagccctagaacagaaacatcaacagatgatac 234
|||||||||||||| |||||||| ||||| |||||||||||||||||
Sbjct: 65241 ttacaatggcagatatgagccctaggacagatacatcaacagatgatac 65289
Score = 56.0 bits (28), Expect = 3e-005
Identities = 49/56 (87%)
Strand = Plus / Plus
Query: 461 cagggcatttttatatctagttcagttgatcagtcacactccatgagtggaaatgg 516
||||||||||||||||| || ||||| || ||| | || |||||||||||||||||
Sbjct: 68940 cagggcatttttatatccagctcagtggaccagactcattccatgagtggaaatgg 68995
Score = 54.0 bits (27), Expect = 1e-004
Identities = 44/49 (89%), Gaps = 3/49 (6%)
Strand = Plus / Plus
Query: 277 tgcttctgactccagtgacagatccaaagacaaacatggagatcaaaag 325
|||||||||||| |||||||||||| |||||||||| ||||||||||
Sbjct: 66611 tgcttctgactc---tgacagatccaaggacaaacatgaagatcaaaag 66656
Score = 52.0 bits (26), Expect = 4e-004
Identities = 41/46 (89%)
Strand = Plus / Plus
Query: 324 agacattgcgccgccttgctcaaaatcgtgaggctgcaaggaagag 369
|||||||||| || || || |||||||| |||||||||||||||||
Sbjct: 66735 agacattgcgtcggctcgcccaaaatcgcgaggctgcaaggaagag 66780
>dbj|AP003103.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
clone:B1085F09
Length = 132713
Score = 151 bits (76), Expect = 6e-034
Identities = 169/200 (84%)
Strand = Plus / Plus
Query: 515 ggggcatcggcctttgatatggagtatgcgaggtggttggaagagcacaatcggcaaatt 574
||||||| ||| ||||||||||||||||| | ||||||||||| |||||| ||||||||
Sbjct: 13658 ggggcattggcttttgatatggagtatgcacgttggttggaagaacacaataggcaaatt 13717
Query: 575 agtgaactaagggctggtgtcagtgctcatgcaagtgatactgatcttcgaagtgttgtt 634
| ||| |||||| ||| |||| |||||||||| |||||| ||| || || ||||||||
Sbjct: 13718 aatgagctaaggtctgcagtcaatgctcatgcaggtgataatgagctccgtggtgttgtt 13777
Query: 635 gataagatcatgtcacactatgatgagatttttaggctcaaaggcaatgcagccaaggca 694
|| |||||||||||||||||||| |||||||| | || ||||| ||||| ||||| |||
Sbjct: 13778 gacaagatcatgtcacactatgaggagattttcaagcagaaaggaaatgcggccaaagca 13837
Query: 695 gatgtttttcacgtcttatc 714
||||| ||||| || |||||
Sbjct: 13838 gatgtctttcatgtgttatc 13857
Score = 105 bits (53), Expect = 3e-020
Identities = 74/81 (91%)
Strand = Plus / Plus
Query: 384 aggcatatgttcaacagttggagaatagcaggctaaaacttacccaactagagcaagagc 443
|||||||||||||||| |||||||||||||||||||| ||||| |||||||| |||||
Sbjct: 13298 aggcatatgttcaacaattggagaatagcaggctaaagcttacacaactagaacaagaat 13357
Query: 444 tgcaaagagctcgtcagcagg 464
||||| |||||||||||||||
Sbjct: 13358 tgcaacgagctcgtcagcagg 13378
Score = 58.0 bits (29), Expect = 7e-006
Identities = 44/49 (89%)
Strand = Plus / Plus
Query: 186 ttacaatggcagatgccagccctagaacagaaacatcaacagatgatac 234
|||||||||||||| |||||||| ||||| |||||||||||||||||
Sbjct: 9757 ttacaatggcagatatgagccctaggacagatacatcaacagatgatac 9805
Score = 56.0 bits (28), Expect = 3e-005
Identities = 49/56 (87%)
Strand = Plus / Plus
Query: 461 cagggcatttttatatctagttcagttgatcagtcacactccatgagtggaaatgg 516
||||||||||||||||| || ||||| || ||| | || |||||||||||||||||
Sbjct: 13456 cagggcatttttatatccagctcagtggaccagactcattccatgagtggaaatgg 13511
Score = 54.0 bits (27), Expect = 1e-004
Identities = 44/49 (89%), Gaps = 3/49 (6%)
Strand = Plus / Plus
Query: 277 tgcttctgactccagtgacagatccaaagacaaacatggagatcaaaag 325
|||||||||||| |||||||||||| |||||||||| ||||||||||
Sbjct: 11127 tgcttctgactc---tgacagatccaaggacaaacatgaagatcaaaag 11172
Score = 52.0 bits (26), Expect = 4e-004
Identities = 41/46 (89%)
Strand = Plus / Plus
Query: 324 agacattgcgccgccttgctcaaaatcgtgaggctgcaaggaagag 369
|||||||||| || || || |||||||| |||||||||||||||||
Sbjct: 11251 agacattgcgtcggctcgcccaaaatcgcgaggctgcaaggaagag 11296
>gb|CH401164.1| Oryza sativa (japonica cultivar-group) chromosome 1 scaffold000001 genomic
scaffold, whole genome shotgun sequence
Length = 11616395
Score = 151 bits (76), Expect = 6e-034
Identities = 169/200 (84%)
Strand = Plus / Plus
Query: 515 ggggcatcggcctttgatatggagtatgcgaggtggttggaagagcacaatcggcaaatt 574
||||||| ||| ||||||||||||||||| | ||||||||||| |||||| ||||||||
Sbjct: 10046998 ggggcattggcttttgatatggagtatgcacgttggttggaagaacacaataggcaaatt 10047057
Query: 575 agtgaactaagggctggtgtcagtgctcatgcaagtgatactgatcttcgaagtgttgtt 634
| ||| |||||| ||| |||| |||||||||| |||||| ||| || || ||||||||
Sbjct: 10047058 aatgagctaaggtctgcagtcaatgctcatgcaggtgataatgagctccgtggtgttgtt 10047117
Query: 635 gataagatcatgtcacactatgatgagatttttaggctcaaaggcaatgcagccaaggca 694
|| |||||||||||||||||||| |||||||| | || ||||| ||||| ||||| |||
Sbjct: 10047118 gacaagatcatgtcacactatgaggagattttcaagcagaaaggaaatgcggccaaagca 10047177
Query: 695 gatgtttttcacgtcttatc 714
||||| ||||| || |||||
Sbjct: 10047178 gatgtctttcatgtgttatc 10047197
Score = 105 bits (53), Expect = 3e-020
Identities = 74/81 (91%)
Strand = Plus / Plus
Query: 384 aggcatatgttcaacagttggagaatagcaggctaaaacttacccaactagagcaagagc 443
|||||||||||||||| |||||||||||||||||||| ||||| |||||||| |||||
Sbjct: 10046638 aggcatatgttcaacaattggagaatagcaggctaaagcttacacaactagaacaagaat 10046697
Query: 444 tgcaaagagctcgtcagcagg 464
||||| |||||||||||||||
Sbjct: 10046698 tgcaacgagctcgtcagcagg 10046718
Score = 58.0 bits (29), Expect = 7e-006
Identities = 44/49 (89%)
Strand = Plus / Plus
Query: 186 ttacaatggcagatgccagccctagaacagaaacatcaacagatgatac 234
|||||||||||||| |||||||| ||||| |||||||||||||||||
Sbjct: 10043097 ttacaatggcagatatgagccctaggacagatacatcaacagatgatac 10043145
Score = 56.0 bits (28), Expect = 3e-005
Identities = 49/56 (87%)
Strand = Plus / Plus
Query: 461 cagggcatttttatatctagttcagttgatcagtcacactccatgagtggaaatgg 516
||||||||||||||||| || ||||| || ||| | || |||||||||||||||||
Sbjct: 10046796 cagggcatttttatatccagctcagtggaccagactcattccatgagtggaaatgg 10046851
Score = 54.0 bits (27), Expect = 1e-004
Identities = 44/49 (89%), Gaps = 3/49 (6%)
Strand = Plus / Plus
Query: 277 tgcttctgactccagtgacagatccaaagacaaacatggagatcaaaag 325
|||||||||||| |||||||||||| |||||||||| ||||||||||
Sbjct: 10044467 tgcttctgactc---tgacagatccaaggacaaacatgaagatcaaaag 10044512
Score = 52.0 bits (26), Expect = 4e-004
Identities = 41/46 (89%)
Strand = Plus / Plus
Query: 324 agacattgcgccgccttgctcaaaatcgtgaggctgcaaggaagag 369
|||||||||| || || || |||||||| |||||||||||||||||
Sbjct: 10044591 agacattgcgtcggctcgcccaaaatcgcgaggctgcaaggaagag 10044636
>gb|CM000138.1| Oryza sativa (japonica cultivar-group) chromosome 1, whole genome shotgun
sequence
Length = 42596331
Score = 151 bits (76), Expect = 6e-034
Identities = 169/200 (84%)
Strand = Plus / Plus
Query: 515 ggggcatcggcctttgatatggagtatgcgaggtggttggaagagcacaatcggcaaatt 574
||||||| ||| ||||||||||||||||| | ||||||||||| |||||| ||||||||
Sbjct: 10046998 ggggcattggcttttgatatggagtatgcacgttggttggaagaacacaataggcaaatt 10047057
Query: 575 agtgaactaagggctggtgtcagtgctcatgcaagtgatactgatcttcgaagtgttgtt 634
| ||| |||||| ||| |||| |||||||||| |||||| ||| || || ||||||||
Sbjct: 10047058 aatgagctaaggtctgcagtcaatgctcatgcaggtgataatgagctccgtggtgttgtt 10047117
Query: 635 gataagatcatgtcacactatgatgagatttttaggctcaaaggcaatgcagccaaggca 694
|| |||||||||||||||||||| |||||||| | || ||||| ||||| ||||| |||
Sbjct: 10047118 gacaagatcatgtcacactatgaggagattttcaagcagaaaggaaatgcggccaaagca 10047177
Query: 695 gatgtttttcacgtcttatc 714
||||| ||||| || |||||
Sbjct: 10047178 gatgtctttcatgtgttatc 10047197
Score = 105 bits (53), Expect = 3e-020
Identities = 74/81 (91%)
Strand = Plus / Plus
Query: 384 aggcatatgttcaacagttggagaatagcaggctaaaacttacccaactagagcaagagc 443
|||||||||||||||| |||||||||||||||||||| ||||| |||||||| |||||
Sbjct: 10046638 aggcatatgttcaacaattggagaatagcaggctaaagcttacacaactagaacaagaat 10046697
Query: 444 tgcaaagagctcgtcagcagg 464
||||| |||||||||||||||
Sbjct: 10046698 tgcaacgagctcgtcagcagg 10046718
Score = 58.0 bits (29), Expect = 7e-006
Identities = 44/49 (89%)
Strand = Plus / Plus
Query: 186 ttacaatggcagatgccagccctagaacagaaacatcaacagatgatac 234
|||||||||||||| |||||||| ||||| |||||||||||||||||
Sbjct: 10043097 ttacaatggcagatatgagccctaggacagatacatcaacagatgatac 10043145
Score = 56.0 bits (28), Expect = 3e-005
Identities = 58/68 (85%)
Strand = Plus / Minus
Query: 319 tcaaaagacattgcgccgccttgctcaaaatcgtgaggctgcaaggaagagccgactaag 378
|||| ||||| | ||||||||||| ||||||||||| ||||| ||||| ||||| ||||
Sbjct: 33872625 tcaacagacacttcgccgccttgcccaaaatcgtgaagctgctaggaaaagccgtttaag 33872566
Query: 379 gaagaagg 386
|||||||
Sbjct: 33872565 aaagaagg 33872558
Score = 56.0 bits (28), Expect = 3e-005
Identities = 49/56 (87%)
Strand = Plus / Plus
Query: 461 cagggcatttttatatctagttcagttgatcagtcacactccatgagtggaaatgg 516
||||||||||||||||| || ||||| || ||| | || |||||||||||||||||
Sbjct: 10046796 cagggcatttttatatccagctcagtggaccagactcattccatgagtggaaatgg 10046851
Score = 54.0 bits (27), Expect = 1e-004
Identities = 44/49 (89%), Gaps = 3/49 (6%)
Strand = Plus / Plus
Query: 277 tgcttctgactccagtgacagatccaaagacaaacatggagatcaaaag 325
|||||||||||| |||||||||||| |||||||||| ||||||||||
Sbjct: 10044467 tgcttctgactc---tgacagatccaaggacaaacatgaagatcaaaag 10044512
Score = 52.0 bits (26), Expect = 4e-004
Identities = 41/46 (89%)
Strand = Plus / Plus
Query: 324 agacattgcgccgccttgctcaaaatcgtgaggctgcaaggaagag 369
|||||||||| || || || |||||||| |||||||||||||||||
Sbjct: 10044591 agacattgcgtcggctcgcccaaaatcgcgaggctgcaaggaagag 10044636
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43261740
Score = 151 bits (76), Expect = 6e-034
Identities = 169/200 (84%)
Strand = Plus / Plus
Query: 515 ggggcatcggcctttgatatggagtatgcgaggtggttggaagagcacaatcggcaaatt 574
||||||| ||| ||||||||||||||||| | ||||||||||| |||||| ||||||||
Sbjct: 9933376 ggggcattggcttttgatatggagtatgcacgttggttggaagaacacaataggcaaatt 9933435
Query: 575 agtgaactaagggctggtgtcagtgctcatgcaagtgatactgatcttcgaagtgttgtt 634
| ||| |||||| ||| |||| |||||||||| |||||| ||| || || ||||||||
Sbjct: 9933436 aatgagctaaggtctgcagtcaatgctcatgcaggtgataatgagctccgtggtgttgtt 9933495
Query: 635 gataagatcatgtcacactatgatgagatttttaggctcaaaggcaatgcagccaaggca 694
|| |||||||||||||||||||| |||||||| | || ||||| ||||| ||||| |||
Sbjct: 9933496 gacaagatcatgtcacactatgaggagattttcaagcagaaaggaaatgcggccaaagca 9933555
Query: 695 gatgtttttcacgtcttatc 714
||||| ||||| || |||||
Sbjct: 9933556 gatgtctttcatgtgttatc 9933575
Score = 105 bits (53), Expect = 3e-020
Identities = 74/81 (91%)
Strand = Plus / Plus
Query: 384 aggcatatgttcaacagttggagaatagcaggctaaaacttacccaactagagcaagagc 443
|||||||||||||||| |||||||||||||||||||| ||||| |||||||| |||||
Sbjct: 9933016 aggcatatgttcaacaattggagaatagcaggctaaagcttacacaactagaacaagaat 9933075
Query: 444 tgcaaagagctcgtcagcagg 464
||||| |||||||||||||||
Sbjct: 9933076 tgcaacgagctcgtcagcagg 9933096
Score = 58.0 bits (29), Expect = 7e-006
Identities = 44/49 (89%)
Strand = Plus / Plus
Query: 186 ttacaatggcagatgccagccctagaacagaaacatcaacagatgatac 234
|||||||||||||| |||||||| ||||| |||||||||||||||||
Sbjct: 9929475 ttacaatggcagatatgagccctaggacagatacatcaacagatgatac 9929523
Score = 56.0 bits (28), Expect = 3e-005
Identities = 58/68 (85%)
Strand = Plus / Minus
Query: 319 tcaaaagacattgcgccgccttgctcaaaatcgtgaggctgcaaggaagagccgactaag 378
|||| ||||| | ||||||||||| ||||||||||| ||||| ||||| ||||| ||||
Sbjct: 34303725 tcaacagacacttcgccgccttgcccaaaatcgtgaagctgctaggaaaagccgtttaag 34303666
Query: 379 gaagaagg 386
|||||||
Sbjct: 34303665 aaagaagg 34303658
Score = 56.0 bits (28), Expect = 3e-005
Identities = 49/56 (87%)
Strand = Plus / Plus
Query: 461 cagggcatttttatatctagttcagttgatcagtcacactccatgagtggaaatgg 516
||||||||||||||||| || ||||| || ||| | || |||||||||||||||||
Sbjct: 9933174 cagggcatttttatatccagctcagtggaccagactcattccatgagtggaaatgg 9933229
Score = 54.0 bits (27), Expect = 1e-004
Identities = 44/49 (89%), Gaps = 3/49 (6%)
Strand = Plus / Plus
Query: 277 tgcttctgactccagtgacagatccaaagacaaacatggagatcaaaag 325
|||||||||||| |||||||||||| |||||||||| ||||||||||
Sbjct: 9930845 tgcttctgactc---tgacagatccaaggacaaacatgaagatcaaaag 9930890
Score = 52.0 bits (26), Expect = 4e-004
Identities = 41/46 (89%)
Strand = Plus / Plus
Query: 324 agacattgcgccgccttgctcaaaatcgtgaggctgcaaggaagag 369
|||||||||| || || || |||||||| |||||||||||||||||
Sbjct: 9930969 agacattgcgtcggctcgcccaaaatcgcgaggctgcaaggaagag 9931014
>ref|NM_188133.1| Oryza sativa (japonica cultivar-group), Ozsa8565 predicted mRNA
Length = 795
Score = 149 bits (75), Expect = 2e-033
Identities = 168/199 (84%)
Strand = Plus / Plus
Query: 516 gggcatcggcctttgatatggagtatgcgaggtggttggaagagcacaatcggcaaatta 575
|||||| ||| ||||||||||||||||| | ||||||||||| |||||| |||||||||
Sbjct: 77 gggcattggcttttgatatggagtatgcacgttggttggaagaacacaataggcaaatta 136
Query: 576 gtgaactaagggctggtgtcagtgctcatgcaagtgatactgatcttcgaagtgttgttg 635
||| |||||| ||| |||| |||||||||| |||||| ||| || || |||||||||
Sbjct: 137 atgagctaaggtctgcagtcaatgctcatgcaggtgataatgagctccgtggtgttgttg 196
Query: 636 ataagatcatgtcacactatgatgagatttttaggctcaaaggcaatgcagccaaggcag 695
| |||||||||||||||||||| |||||||| | || ||||| ||||| ||||| ||||
Sbjct: 197 acaagatcatgtcacactatgaggagattttcaagcagaaaggaaatgcggccaaagcag 256
Query: 696 atgtttttcacgtcttatc 714
|||| ||||| || |||||
Sbjct: 257 atgtctttcatgtgttatc 275
>gb|CF330500.1|CF330500 NACL--06-D21.g1 Rice callus plasmid cDNA library (NACL) Oryza
sativa (japonica cultivar-group) cDNA clone
NACL--06-D21, mRNA sequence
Length = 531
Score = 137 bits (69), Expect = 9e-030
Identities = 108/121 (89%)
Strand = Plus / Plus
Query: 344 caaaatcgtgaggctgcaaggaagagccgactaaggaagaaggcatatgttcaacagttg 403
|||||||| ||||||||||||||||| || | ||||| ||||||||||||||||| |||
Sbjct: 213 caaaatcgcgaggctgcaaggaagagtcgtttgaggaaaaaggcatatgttcaacaattg 272
Query: 404 gagaatagcaggctaaaacttacccaactagagcaagagctgcaaagagctcgtcagcag 463
||||||||||||||||| ||||| |||||||| ||||| ||||| ||||||||||||||
Sbjct: 273 gagaatagcaggctaaagcttacacaactagaacaagaattgcaacgagctcgtcagcag 332
Query: 464 g 464
|
Sbjct: 333 g 333
Score = 109 bits (55), Expect = 2e-021
Identities = 100/115 (86%)
Strand = Plus / Plus
Query: 461 cagggcatttttatatctagttcagttgatcagtcacactccatgagtggaaatggggca 520
||||||||||||||||| || ||||| || ||| || |||||||||||||||||||||
Sbjct: 411 cagggcatttttatatccagctcagtggaccagattcattccatgagtggaaatggggca 470
Query: 521 tcggcctttgatatggagtatgcgaggtggttggaagagcacaatcggcaaatta 575
| ||| ||||||||||||||||| | ||||||||||| |||||| |||||||||
Sbjct: 471 ttggcttttgatatggagtatgcacgttggttggaagaacacaataggcaaatta 525
Score = 54.0 bits (27), Expect = 1e-004
Identities = 44/49 (89%), Gaps = 3/49 (6%)
Strand = Plus / Plus
Query: 277 tgcttctgactccagtgacagatccaaagacaaacatggagatcaaaag 325
|||||||||||| |||||||||||| |||||||||| ||||||||||
Sbjct: 69 tgcttctgactc---tgacagatccaaggacaaacatgaagatcaaaag 114
>dbj|AK069158.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023008B01, full
insert sequence
Length = 3130
Score = 125 bits (63), Expect = 3e-026
Identities = 230/285 (80%), Gaps = 3/285 (1%)
Strand = Plus / Plus
Query: 277 tgcttctgactccagtgacagatccaaagacaaacatggagatcaaaagacattgcgccg 336
||||||||| || |||||||| || || ||||||| |||||| |||||| | |||||
Sbjct: 964 tgcttctgattctagtgacaggtcaaaggacaaact---agatcataagacacttcgccg 1020
Query: 337 ccttgctcaaaatcgtgaggctgcaaggaagagccgactaaggaagaaggcatatgttca 396
|||||| ||||||||||| ||||| ||||| ||||| |||| |||||||||||| | ||
Sbjct: 1021 ccttgcccaaaatcgtgaagctgctaggaaaagccgtttaagaaagaaggcatatatcca 1080
Query: 397 acagttggagaatagcaggctaaaacttacccaactagagcaagagctgcaaagagctcg 456
| | | |||| |||||| | |||||||| || ||||||||||||| || | |||||
Sbjct: 1081 aaaccttgagagtagcagattgaaacttactcagatagagcaagagcttcagcgggctcg 1140
Query: 457 tcagcagggcatttttatatctagttcagttgatcagtcacactccatgagtggaaatgg 516
||| ||||||||||||||||| | || ||||||||| ||||| ||||||||||||
Sbjct: 1141 tcaacagggcatttttatatcaacatcgagtgatcagtcccactcagcgagtggaaatgg 1200
Query: 517 ggcatcggcctttgatatggagtatgcgaggtggttggaagagca 561
|| | ||| ||||| ||||||||||| |||||||||| |||||
Sbjct: 1201 agctttggcatttgacatggagtatgcacggtggttggaggagca 1245
>gb|AY620415.1| Oryza sativa (japonica cultivar-group) clone P0702B09 bZIP
transcription factor mRNA, complete cds
Length = 1862
Score = 125 bits (63), Expect = 3e-026
Identities = 230/285 (80%), Gaps = 3/285 (1%)
Strand = Plus / Plus
Query: 277 tgcttctgactccagtgacagatccaaagacaaacatggagatcaaaagacattgcgccg 336
||||||||| || |||||||| || || ||||||| |||||| |||||| | |||||
Sbjct: 638 tgcttctgattctagtgacaggtcaaaggacaaact---agatcataagacacttcgccg 694
Query: 337 ccttgctcaaaatcgtgaggctgcaaggaagagccgactaaggaagaaggcatatgttca 396
|||||| ||||||||||| ||||| ||||| ||||| |||| |||||||||||| | ||
Sbjct: 695 ccttgcccaaaatcgtgaagctgctaggaaaagccgtttaagaaagaaggcatatatcca 754
Query: 397 acagttggagaatagcaggctaaaacttacccaactagagcaagagctgcaaagagctcg 456
| | | |||| |||||| | |||||||| || ||||||||||||| || | |||||
Sbjct: 755 aaaccttgagagtagcagattgaaacttactcagatagagcaagagcttcagcgggctcg 814
Query: 457 tcagcagggcatttttatatctagttcagttgatcagtcacactccatgagtggaaatgg 516
||| ||||||||||||||||| | || ||||||||| ||||| ||||||||||||
Sbjct: 815 tcaacagggcatttttatatcaacatcgagtgatcagtcccactcagcgagtggaaatgg 874
Query: 517 ggcatcggcctttgatatggagtatgcgaggtggttggaagagca 561
|| | ||| ||||| ||||||||||| |||||||||| |||||
Sbjct: 875 agctttggcatttgacatggagtatgcacggtggttggaggagca 919
>ref|NM_191013.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 1419
Score = 125 bits (63), Expect = 3e-026
Identities = 230/285 (80%), Gaps = 3/285 (1%)
Strand = Plus / Plus
Query: 277 tgcttctgactccagtgacagatccaaagacaaacatggagatcaaaagacattgcgccg 336
||||||||| || |||||||| || || ||||||| |||||| |||||| | |||||
Sbjct: 516 tgcttctgattctagtgacaggtcaaaggacaaact---agatcataagacacttcgccg 572
Query: 337 ccttgctcaaaatcgtgaggctgcaaggaagagccgactaaggaagaaggcatatgttca 396
|||||| ||||||||||| ||||| ||||| ||||| |||| |||||||||||| | ||
Sbjct: 573 ccttgcccaaaatcgtgaagctgctaggaaaagccgtttaagaaagaaggcatatatcca 632
Query: 397 acagttggagaatagcaggctaaaacttacccaactagagcaagagctgcaaagagctcg 456
| | | |||| |||||| | |||||||| || ||||||||||||| || | |||||
Sbjct: 633 aaaccttgagagtagcagattgaaacttactcagatagagcaagagcttcagcgggctcg 692
Query: 457 tcagcagggcatttttatatctagttcagttgatcagtcacactccatgagtggaaatgg 516
||| ||||||||||||||||| | || ||||||||| ||||| ||||||||||||
Sbjct: 693 tcaacagggcatttttatatcaacatcgagtgatcagtcccactcagcgagtggaaatgg 752
Query: 517 ggcatcggcctttgatatggagtatgcgaggtggttggaagagca 561
|| | ||| ||||| ||||||||||| |||||||||| |||||
Sbjct: 753 agctttggcatttgacatggagtatgcacggtggttggaggagca 797
>gb|CF322658.1|CF322658 HDN--01-L06.g1 OsHDAC1-overexpressing transgenic rice lambda phage
cDNA library II (HDN) Oryza sativa (japonica
cultivar-group) cDNA clone HDN--01-L06, mRNA sequence
Length = 658
Score = 85.7 bits (43), Expect = 3e-014
Identities = 156/193 (80%), Gaps = 3/193 (1%)
Strand = Plus / Plus
Query: 277 tgcttctgactccagtgacagatccaaagacaaacatggagatcaaaagacattgcgccg 336
||||||||| || |||||||| || || ||||||| |||||| |||||| | |||||
Sbjct: 469 tgcttctgattctagtgacaggtcaaaggacaaact---agatcataagacacttcgccg 525
Query: 337 ccttgctcaaaatcgtgaggctgcaaggaagagccgactaaggaagaaggcatatgttca 396
|||||| ||||||||||| ||||| ||||| ||||| |||| |||||||||||| | ||
Sbjct: 526 ccttgcccaaaatcgtgaagctgctaggaaaagccgtttaagaaagaaggcatatatcca 585
Query: 397 acagttggagaatagcaggctaaaacttacccaactagagcaagagctgcaaagagctcg 456
| | | |||| |||||| | |||||||| || ||||||||||||| || | |||||
Sbjct: 586 aaaccttgagagtagcagattgaaacttactcagatagagcaagagcttcagcgggctcg 645
Query: 457 tcagcagggcatt 469
||| |||||||||
Sbjct: 646 tcaacagggcatt 658
>gb|CB644376.1|CB644376 OSJNEb05I24.f OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb05I24 5', mRNA sequence
Length = 871
Score = 67.9 bits (34), Expect = 7e-009
Identities = 160/202 (79%)
Strand = Plus / Plus
Query: 320 caaaagacattgcgccgccttgctcaaaatcgtgaggctgcaaggaagagccgactaagg 379
||||||||| | || || |||||||||||||||||||| ||||| || || || || |||
Sbjct: 660 caaaagacaattcggcggcttgctcaaaatcgtgaggcagcaagaaaaagtcggctgagg 719
Query: 380 aagaaggcatatgttcaacagttggagaatagcaggctaaaacttacccaactagagcaa 439
|| ||||||||||| ||||| | |||| || | ||| || ||| | || ||||||||
Sbjct: 720 aaaaaggcatatgtgcaacaactagagagcagtaagctgaagcttgcacagctagagcag 779
Query: 440 gagctgcaaagagctcgtcagcagggcatttttatatctagttcagttgatcagtcacac 499
|| || || | ||||||||||||||| || || || ||||| || | || ||| | ||
Sbjct: 780 gaacttcagaaagctcgtcagcagggaatcttcatctctagctctggagaccagacccat 839
Query: 500 tccatgagtggaaatggggcat 521
|||||||||||||||||||||
Sbjct: 840 gccatgagtggaaatggggcat 861
>gb|CB668104.1|CB668104 OSJNEd15M18.f OSJNEd Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEd15M18 5', mRNA sequence
Length = 843
Score = 67.9 bits (34), Expect = 7e-009
Identities = 160/202 (79%)
Strand = Plus / Plus
Query: 320 caaaagacattgcgccgccttgctcaaaatcgtgaggctgcaaggaagagccgactaagg 379
||||||||| | || || |||||||||||||||||||| ||||| || || || || |||
Sbjct: 638 caaaagacaattcggcggcttgctcaaaatcgtgaggcagcaagaaaaagtcggctgagg 697
Query: 380 aagaaggcatatgttcaacagttggagaatagcaggctaaaacttacccaactagagcaa 439
|| ||||||||||| ||||| | |||| || | ||| || ||| | || ||||||||
Sbjct: 698 aaaaaggcatatgtgcaacaactagagagcagtaagctgaagcttgcacagctagagcag 757
Query: 440 gagctgcaaagagctcgtcagcagggcatttttatatctagttcagttgatcagtcacac 499
|| || || | ||||||||||||||| || || || ||||| || | || ||| | ||
Sbjct: 758 gaacttcagaaagctcgtcagcagggaatcttcatctctagctctggagaccagacccat 817
Query: 500 tccatgagtggaaatggggcat 521
|||||||||||||||||||||
Sbjct: 818 gccatgagtggaaatggggcat 839
>gb|CB676771.1|CB676771 OSJNEe13D11.f OSJNEe Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEe13D11 5', mRNA sequence
Length = 822
Score = 67.9 bits (34), Expect = 7e-009
Identities = 160/202 (79%)
Strand = Plus / Plus
Query: 320 caaaagacattgcgccgccttgctcaaaatcgtgaggctgcaaggaagagccgactaagg 379
||||||||| | || || |||||||||||||||||||| ||||| || || || || |||
Sbjct: 610 caaaagacaattcggcggcttgctcaaaatcgtgaggcagcaagaaaaagtcggctgagg 669
Query: 380 aagaaggcatatgttcaacagttggagaatagcaggctaaaacttacccaactagagcaa 439
|| ||||||||||| ||||| | |||| || | ||| || ||| | || ||||||||
Sbjct: 670 aaaaaggcatatgtgcaacaactagagagcagtaagctgaagcttgcacagctagagcag 729
Query: 440 gagctgcaaagagctcgtcagcagggcatttttatatctagttcagttgatcagtcacac 499
|| || || | ||||||||||||||| || || || ||||| || | || ||| | ||
Sbjct: 730 gaacttcagaaagctcgtcagcagggaatcttcatctctagctctggagaccagacccat 789
Query: 500 tccatgagtggaaatggggcat 521
|||||||||||||||||||||
Sbjct: 790 gccatgagtggaaatggggcat 811
>dbj|AK100440.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023089F16, full
insert sequence
Length = 2016
Score = 67.9 bits (34), Expect = 7e-009
Identities = 160/202 (79%)
Strand = Plus / Plus
Query: 320 caaaagacattgcgccgccttgctcaaaatcgtgaggctgcaaggaagagccgactaagg 379
||||||||| | || || |||||||||||||||||||| ||||| || || || || |||
Sbjct: 667 caaaagacaattcggcggcttgctcaaaatcgtgaggcagcaagaaaaagtcggctgagg 726
Query: 380 aagaaggcatatgttcaacagttggagaatagcaggctaaaacttacccaactagagcaa 439
|| ||||||||||| ||||| | |||| || | ||| || ||| | || ||||||||
Sbjct: 727 aaaaaggcatatgtgcaacaactagagagcagtaagctgaagcttgcacagctagagcag 786
Query: 440 gagctgcaaagagctcgtcagcagggcatttttatatctagttcagttgatcagtcacac 499
|| || || | ||||||||||||||| || || || ||||| || | || ||| | ||
Sbjct: 787 gaacttcagaaagctcgtcagcagggaatcttcatctctagctctggagaccagacccat 846
Query: 500 tccatgagtggaaatggggcat 521
|||||||||||||||||||||
Sbjct: 847 gccatgagtggaaatggggcat 868
>ref|XM_479605.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 1522
Score = 67.9 bits (34), Expect = 7e-009
Identities = 160/202 (79%)
Strand = Plus / Plus
Query: 320 caaaagacattgcgccgccttgctcaaaatcgtgaggctgcaaggaagagccgactaagg 379
||||||||| | || || |||||||||||||||||||| ||||| || || || || |||
Sbjct: 173 caaaagacaattcggcggcttgctcaaaatcgtgaggcagcaagaaaaagtcggctgagg 232
Query: 380 aagaaggcatatgttcaacagttggagaatagcaggctaaaacttacccaactagagcaa 439
|| ||||||||||| ||||| | |||| || | ||| || ||| | || ||||||||
Sbjct: 233 aaaaaggcatatgtgcaacaactagagagcagtaagctgaagcttgcacagctagagcag 292
Query: 440 gagctgcaaagagctcgtcagcagggcatttttatatctagttcagttgatcagtcacac 499
|| || || | ||||||||||||||| || || || ||||| || | || ||| | ||
Sbjct: 293 gaacttcagaaagctcgtcagcagggaatcttcatctctagctctggagaccagacccat 352
Query: 500 tccatgagtggaaatggggcat 521
|||||||||||||||||||||
Sbjct: 353 gccatgagtggaaatggggcat 374
>gb|CB658983.1|CB658983 OSJNEc15I02.f OSJNEc Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEc15I02 5', mRNA sequence
Length = 824
Score = 65.9 bits (33), Expect = 3e-008
Identities = 159/201 (79%)
Strand = Plus / Plus
Query: 320 caaaagacattgcgccgccttgctcaaaatcgtgaggctgcaaggaagagccgactaagg 379
||||||||| | || || |||||||||||||||||||| ||||| || || || || |||
Sbjct: 624 caaaagacaattcggcggcttgctcaaaatcgtgaggcagcaagaaaaagtcggctgagg 683
Query: 380 aagaaggcatatgttcaacagttggagaatagcaggctaaaacttacccaactagagcaa 439
|| ||||||||||| ||||| | |||| || | ||| || ||| | || ||||||||
Sbjct: 684 aaaaaggcatatgtgcaacaactagagagcagtaagctgaagcttgcacagctagagcag 743
Query: 440 gagctgcaaagagctcgtcagcagggcatttttatatctagttcagttgatcagtcacac 499
|| || || | ||||||||||||||| || || || ||||| || | || ||| | ||
Sbjct: 744 gaacttcagaaagctcgtcagcagggaatcttcatctctagctctggagaccagacccat 803
Query: 500 tccatgagtggaaatggggca 520
||||||||||||||||||||
Sbjct: 804 gccatgagtggaaatggggca 824
>gb|CB654949.1|CB654949 OSJNEc07O05.f OSJNEc Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEc07O05 5', mRNA sequence
Length = 722
Score = 63.9 bits (32), Expect = 1e-007
Identities = 59/68 (86%)
Strand = Plus / Plus
Query: 332 cgccgccttgctcaaaatcgtgaggctgcaaggaagagccgactaaggaagaaggcatat 391
||||| |||||||||||||||||||||||||| || || || || || || |||||||||
Sbjct: 449 cgccggcttgctcaaaatcgtgaggctgcaagaaaaagtcggctgagaaaaaaggcatat 508
Query: 392 gttcaaca 399
|| |||||
Sbjct: 509 gtacaaca 516
>gb|CB655035.1|CB655035 OSJNEc08A23.f OSJNEc Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEc08A23 5', mRNA sequence
Length = 726
Score = 63.9 bits (32), Expect = 1e-007
Identities = 59/68 (86%)
Strand = Plus / Plus
Query: 332 cgccgccttgctcaaaatcgtgaggctgcaaggaagagccgactaaggaagaaggcatat 391
||||| |||||||||||||||||||||||||| || || || || || || |||||||||
Sbjct: 430 cgccggcttgctcaaaatcgtgaggctgcaagaaaaagtcggctgagaaaaaaggcatat 489
Query: 392 gttcaaca 399
|| |||||
Sbjct: 490 gtacaaca 497
>gb|CB655356.1|CB655356 OSJNEc08K18.f OSJNEc Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEc08K18 5', mRNA sequence
Length = 726
Score = 63.9 bits (32), Expect = 1e-007
Identities = 68/80 (85%)
Strand = Plus / Plus
Query: 320 caaaagacattgcgccgccttgctcaaaatcgtgaggctgcaaggaagagccgactaagg 379
||||||||| | || || |||||||||||||||||||| ||||| || || || || |||
Sbjct: 603 caaaagacaattcggcggcttgctcaaaatcgtgaggcagcaagaaaaagtcggctgagg 662
Query: 380 aagaaggcatatgttcaaca 399
|| ||||||||||| |||||
Sbjct: 663 aaaaaggcatatgtgcaaca 682
>gb|CB658954.1|CB658954 OSJNEc15H07.f OSJNEc Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEc15H07 5', mRNA sequence
Length = 810
Score = 63.9 bits (32), Expect = 1e-007
Identities = 59/68 (86%)
Strand = Plus / Plus
Query: 332 cgccgccttgctcaaaatcgtgaggctgcaaggaagagccgactaaggaagaaggcatat 391
||||| |||||||||||||||||||||||||| || || || || || || |||||||||
Sbjct: 408 cgccggcttgctcaaaatcgtgaggctgcaagaaaaagtcggctgagaaaaaaggcatat 467
Query: 392 gttcaaca 399
|| |||||
Sbjct: 468 gtacaaca 475
>gb|CB667999.1|CB667999 OSJNEd15K01.f OSJNEd Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEd15K01 5', mRNA sequence
Length = 828
Score = 63.9 bits (32), Expect = 1e-007
Identities = 68/80 (85%)
Strand = Plus / Plus
Query: 320 caaaagacattgcgccgccttgctcaaaatcgtgaggctgcaaggaagagccgactaagg 379
||||||||| | || || |||||||||||||||||||| ||||| || || || || |||
Sbjct: 664 caaaagacaattcggcggcttgctcaaaatcgtgaggcagcaagaaaaagtcggctgagg 723
Query: 380 aagaaggcatatgttcaaca 399
|| ||||||||||| |||||
Sbjct: 724 aaaaaggcatatgtgcaaca 743
>gb|AY620414.1| Oryza sativa (japonica cultivar-group) clone OSJNBa0005J15 bZIP
transcription factor mRNA, complete cds
Length = 1611
Score = 63.9 bits (32), Expect = 1e-007
Identities = 59/68 (86%)
Strand = Plus / Plus
Query: 332 cgccgccttgctcaaaatcgtgaggctgcaaggaagagccgactaaggaagaaggcatat 391
||||| |||||||||||||||||||||||||| || || || || || || |||||||||
Sbjct: 491 cgccggcttgctcaaaatcgtgaggctgcaagaaaaagtcggctgagaaaaaaggcatat 550
Query: 392 gttcaaca 399
|| |||||
Sbjct: 551 gtacaaca 558
>gb|CL520606.1|CL520606 MUL5E05 Flanking Sequence Tag of Oryza sativa T-DNA insertion lines
Oryza sativa (japonica cultivar-group) genomic, DNA
sequence
Length = 597
Score = 58.0 bits (29), Expect = 7e-006
Identities = 44/49 (89%)
Strand = Plus / Plus
Query: 186 ttacaatggcagatgccagccctagaacagaaacatcaacagatgatac 234
|||||||||||||| |||||||| ||||| |||||||||||||||||
Sbjct: 50 ttacaatggcagatatgagccctaggacagatacatcaacagatgatac 98
>gb|CF324524.1|CF324524 HDN--06-M07.g1 OsHDAC1-overexpressing transgenic rice lambda phage
cDNA library II (HDN) Oryza sativa (japonica
cultivar-group) cDNA clone HDN--06-M07, mRNA sequence
Length = 533
Score = 58.0 bits (29), Expect = 7e-006
Identities = 44/49 (89%)
Strand = Plus / Plus
Query: 186 ttacaatggcagatgccagccctagaacagaaacatcaacagatgatac 234
|||||||||||||| |||||||| ||||| |||||||||||||||||
Sbjct: 274 ttacaatggcagatatgagccctaggacagatacatcaacagatgatac 322
Score = 54.0 bits (27), Expect = 1e-004
Identities = 44/49 (89%), Gaps = 3/49 (6%)
Strand = Plus / Plus
Query: 277 tgcttctgactccagtgacagatccaaagacaaacatggagatcaaaag 325
|||||||||||| |||||||||||| |||||||||| ||||||||||
Sbjct: 368 tgcttctgactc---tgacagatccaaggacaaacatgaagatcaaaag 413
Score = 44.1 bits (22), Expect = 0.10
Identities = 37/42 (88%)
Strand = Plus / Plus
Query: 324 agacattgcgccgccttgctcaaaatcgtgaggctgcaagga 365
|||||||||| || || || |||||||| |||||||||||||
Sbjct: 492 agacattgcgtcggctcgcccaaaatcgcgaggctgcaagga 533
>gb|AC119748.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone
OSJNBa0042L15, from chromosome 3, complete sequence
Length = 172475
Score = 56.0 bits (28), Expect = 3e-005
Identities = 31/32 (96%)
Strand = Plus / Minus
Query: 332 cgccgccttgctcaaaatcgtgaggctgcaag 363
||||| ||||||||||||||||||||||||||
Sbjct: 2722 cgccggcttgctcaaaatcgtgaggctgcaag 2691
>gb|AACV01002546.1| Oryza sativa (japonica cultivar-group) chromosome 1 Ctg002546, whole
genome shotgun sequence
Length = 31940
Score = 56.0 bits (28), Expect = 3e-005
Identities = 58/68 (85%)
Strand = Plus / Minus
Query: 319 tcaaaagacattgcgccgccttgctcaaaatcgtgaggctgcaaggaagagccgactaag 378
|||| ||||| | ||||||||||| ||||||||||| ||||| ||||| ||||| ||||
Sbjct: 29214 tcaacagacacttcgccgccttgcccaaaatcgtgaagctgctaggaaaagccgtttaag 29155
Query: 379 gaagaagg 386
|||||||
Sbjct: 29154 aaagaagg 29147
>gb|AACV01006493.1| Oryza sativa (japonica cultivar-group) chromosome 3 Ctg006493, whole
genome shotgun sequence
Length = 20640
Score = 56.0 bits (28), Expect = 3e-005
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 332 cgccgccttgctcaaaatcgtgaggctgcaag 363
||||| ||||||||||||||||||||||||||
Sbjct: 2813 cgccggcttgctcaaaatcgtgaggctgcaag 2844
>ref|NT_079927.2| Oryza sativa (japonica cultivar-group)
Length = 14818989
Score = 56.0 bits (28), Expect = 3e-005
Identities = 58/68 (85%)
Strand = Plus / Minus
Query: 319 tcaaaagacattgcgccgccttgctcaaaatcgtgaggctgcaaggaagagccgactaag 378
|||| ||||| | ||||||||||| ||||||||||| ||||| ||||| ||||| ||||
Sbjct: 8831778 tcaacagacacttcgccgccttgcccaaaatcgtgaagctgctaggaaaagccgtttaag 8831719
Query: 379 gaagaagg 386
|||||||
Sbjct: 8831718 aaagaagg 8831711
>ref|NT_107192.1| Oryza sativa (japonica cultivar-group)
Length = 4781381
Score = 56.0 bits (28), Expect = 3e-005
Identities = 31/32 (96%)
Strand = Plus / Minus
Query: 332 cgccgccttgctcaaaatcgtgaggctgcaag 363
||||| ||||||||||||||||||||||||||
Sbjct: 2794410 cgccggcttgctcaaaatcgtgaggctgcaag 2794379
>dbj|AP003073.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
clone:P0702B09
Length = 172541
Score = 56.0 bits (28), Expect = 3e-005
Identities = 58/68 (85%)
Strand = Plus / Minus
Query: 319 tcaaaagacattgcgccgccttgctcaaaatcgtgaggctgcaaggaagagccgactaag 378
|||| ||||| | ||||||||||| ||||||||||| ||||| ||||| ||||| ||||
Sbjct: 139411 tcaacagacacttcgccgccttgcccaaaatcgtgaagctgctaggaaaagccgtttaag 139352
Query: 379 gaagaagg 386
|||||||
Sbjct: 139351 aaagaagg 139344
>gb|CH401173.1| Oryza sativa (japonica cultivar-group) chromosome 3 scaffold000010 genomic
scaffold, whole genome shotgun sequence
Length = 13858245
Score = 56.0 bits (28), Expect = 3e-005
Identities = 31/32 (96%)
Strand = Plus / Minus
Query: 332 cgccgccttgctcaaaatcgtgaggctgcaag 363
||||| ||||||||||||||||||||||||||
Sbjct: 11573674 cgccggcttgctcaaaatcgtgaggctgcaag 11573643
>gb|CH401168.1| Oryza sativa (japonica cultivar-group) chromosome 1 scaffold000005 genomic
scaffold, whole genome shotgun sequence
Length = 17394610
Score = 56.0 bits (28), Expect = 3e-005
Identities = 58/68 (85%)
Strand = Plus / Minus
Query: 319 tcaaaagacattgcgccgccttgctcaaaatcgtgaggctgcaaggaagagccgactaag 378
|||| ||||| | ||||||||||| ||||||||||| ||||| ||||| ||||| ||||
Sbjct: 8670904 tcaacagacacttcgccgccttgcccaaaatcgtgaagctgctaggaaaagccgtttaag 8670845
Query: 379 gaagaagg 386
|||||||
Sbjct: 8670844 aaagaagg 8670837
>gb|CM000140.1| Oryza sativa (japonica cultivar-group) chromosome 3, whole genome shotgun
sequence
Length = 37803064
Score = 56.0 bits (28), Expect = 3e-005
Identities = 31/32 (96%)
Strand = Plus / Minus
Query: 332 cgccgccttgctcaaaatcgtgaggctgcaag 363
||||| ||||||||||||||||||||||||||
Sbjct: 11766036 cgccggcttgctcaaaatcgtgaggctgcaag 11766005
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
sequence
Length = 36192742
Score = 56.0 bits (28), Expect = 3e-005
Identities = 31/32 (96%)
Strand = Plus / Minus
Query: 332 cgccgccttgctcaaaatcgtgaggctgcaag 363
||||| ||||||||||||||||||||||||||
Sbjct: 11448913 cgccggcttgctcaaaatcgtgaggctgcaag 11448882
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
Length = 36102668
Score = 56.0 bits (28), Expect = 3e-005
Identities = 31/32 (96%)
Strand = Plus / Minus
Query: 332 cgccgccttgctcaaaatcgtgaggctgcaag 363
||||| ||||||||||||||||||||||||||
Sbjct: 11452150 cgccggcttgctcaaaatcgtgaggctgcaag 11452119
>gb|AQ157293.1|AQ157293 nbxb0009A10r CUGI Rice BAC Library Oryza sativa (japonica
cultivar-group) genomic clone nbxb0009A10r, DNA sequence
Length = 658
Score = 48.1 bits (24), Expect = 0.007
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 332 cgccgccttgctcaaaatcgtgaggctgcaag 363
||||| |||||||||||||||||||| |||||
Sbjct: 655 cgccggcttgctcaaaatcgtgaggcagcaag 624
>gb|AQ272169.1|AQ272169 nbxb0027J07f CUGI Rice BAC Library Oryza sativa (japonica
cultivar-group) genomic clone nbxb0027J07f, DNA sequence
Length = 735
Score = 44.1 bits (22), Expect = 0.10
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 338 cttgctcaaaatcgtgaggctgcaag 363
|||||||||||||||||||| |||||
Sbjct: 504 cttgctcaaaatcgtgaggcagcaag 479
>dbj|AK109719.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-146-A04, full
insert sequence
Length = 1565
Score = 44.1 bits (22), Expect = 0.10
Identities = 58/70 (82%)
Strand = Plus / Plus
Query: 338 cttgctcaaaatcgtgaggctgcaaggaagagccgactaaggaagaaggcatatgttcaa 397
||||| || ||||| ||||| || |||||||||| | |||||||||||||| ||||
Sbjct: 453 cttgcgcagaatcgcgaggcggcgcggaagagccggatgaggaagaaggcatacattcag 512
Query: 398 cagttggaga 407
||||||||||
Sbjct: 513 cagttggaga 522
>dbj|AP003813.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
clone:OJ1150_E04
Length = 130973
Score = 44.1 bits (22), Expect = 0.10
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 338 cttgctcaaaatcgtgaggctgcaag 363
|||||||||||||||||||| |||||
Sbjct: 96725 cttgctcaaaatcgtgaggcagcaag 96750
>gb|AACV01017047.1| Oryza sativa (japonica cultivar-group) chromosome 7 Ctg017047, whole
genome shotgun sequence
Length = 18370
Score = 44.1 bits (22), Expect = 0.10
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 338 cttgctcaaaatcgtgaggctgcaag 363
|||||||||||||||||||| |||||
Sbjct: 9458 cttgctcaaaatcgtgaggcagcaag 9483
>dbj|AP003816.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
clone:OJ1165_F02
Length = 125993
Score = 44.1 bits (22), Expect = 0.10
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 338 cttgctcaaaatcgtgaggctgcaag 363
|||||||||||||||||||| |||||
Sbjct: 1681 cttgctcaaaatcgtgaggcagcaag 1706
>ref|NT_079899.2| Oryza sativa (japonica cultivar-group)
Length = 17249721
Score = 44.1 bits (22), Expect = 0.10
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 338 cttgctcaaaatcgtgaggctgcaag 363
|||||||||||||||||||| |||||
Sbjct: 16774612 cttgctcaaaatcgtgaggcagcaag 16774637
>gb|CH401226.1| Oryza sativa (japonica cultivar-group) chromosome 7 scaffold000063 genomic
scaffold, whole genome shotgun sequence
Length = 15204090
Score = 44.1 bits (22), Expect = 0.10
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 338 cttgctcaaaatcgtgaggctgcaag 363
|||||||||||||||||||| |||||
Sbjct: 14760788 cttgctcaaaatcgtgaggcagcaag 14760813
>gb|CM000144.1| Oryza sativa (japonica cultivar-group) chromosome 7, whole genome shotgun
sequence
Length = 28626509
Score = 44.1 bits (22), Expect = 0.10
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 338 cttgctcaaaatcgtgaggctgcaag 363
|||||||||||||||||||| |||||
Sbjct: 28160227 cttgctcaaaatcgtgaggcagcaag 28160252
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 992,279
Number of Sequences: 438736
Number of extensions: 992279
Number of successful extensions: 6639
Number of sequences better than 0.5: 51
Number of HSP's better than 0.5 without gapping: 54
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 6298
Number of HSP's gapped (non-prelim): 334
length of query: 714
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 693
effective length of database: 2,791,206,460
effective search space: 1934306076780
effective search space used: 1934306076780
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)