BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QBTB.068P15F020924.3.1
(625 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CB684623.1|CB684623 OSJNEf14F09.f OSJNEf Oryza sativa (j... 420 e-115
gb|CB685239.1|CB685239 OSJNEf15H22.f OSJNEf Oryza sativa (j... 420 e-115
dbj|AK061369.1| Oryza sativa (japonica cultivar-group) cDNA... 420 e-115
dbj|AK061406.1| Oryza sativa (japonica cultivar-group) cDNA... 420 e-115
dbj|AK104596.1| Oryza sativa (japonica cultivar-group) cDNA... 420 e-115
dbj|AK104611.1| Oryza sativa (japonica cultivar-group) cDNA... 420 e-115
ref|NM_184112.2| Oryza sativa (japonica cultivar-group), mRNA 420 e-115
gb|D41026.1|D41026 RICS3278A Rice shoot Oryza sativa (japon... 327 4e-087
gb|CF277122.1|CF277122 14ETL--02-I15.b1 Rice etiolated leaf... 327 4e-087
gb|D39891.2|D39891 RICS1543A Rice shoot Oryza sativa (japon... 321 3e-085
gb|D41071.1|D41071 RICS3336A Rice shoot Oryza sativa (japon... 287 4e-075
gb|D41098.1|D41098 RICS3368A Rice shoot Oryza sativa (japon... 283 6e-074
dbj|AK099425.1| Oryza sativa (japonica cultivar-group) cDNA... 242 2e-061
gb|D40164.1|D40164 RICS1944A Rice shoot Oryza sativa (japon... 234 5e-059
gb|D41005.1|D41005 RICS3247A Rice shoot Oryza sativa (japon... 232 2e-058
gb|D40172.1|D40172 RICS1956A Rice shoot Oryza sativa (japon... 212 2e-052
gb|D40389.1|D40389 RICS2334A Rice shoot Oryza sativa (japon... 208 3e-051
gb|D41717.1|D41717 RICS4395A Rice shoot Oryza sativa (japon... 202 2e-049
dbj|AP002747.2| Oryza sativa (japonica cultivar-group) geno... 182 2e-043
dbj|AP002541.2| Oryza sativa (japonica cultivar-group) geno... 182 2e-043
gb|AACV01000079.1| Oryza sativa (japonica cultivar-group) c... 182 2e-043
dbj|BA000010.8| Oryza sativa (japonica cultivar-group) geno... 182 2e-043
ref|NT_036312.3| Oryza sativa (japonica cultivar-group) 182 2e-043
gb|CH401164.1| Oryza sativa (japonica cultivar-group) chrom... 182 2e-043
gb|CM000138.1| Oryza sativa (japonica cultivar-group) chrom... 182 2e-043
dbj|AP008207.1| Oryza sativa (japonica cultivar-group) geno... 182 2e-043
dbj|AG212362.1| Oryza sativa (japonica cultivar-group) DNA,... 149 2e-033
gb|CB685030.1|CB685030 OSJNEf15B24.f OSJNEf Oryza sativa (j... 115 3e-023
dbj|AG212288.1| Oryza sativa (japonica cultivar-group) DNA,... 96 3e-017
dbj|AB155272.1| Oryza sativa (japonica cultivar-group) DNA,... 96 3e-017
dbj|AB156454.2| Oryza sativa (japonica cultivar-group) DNA,... 90 2e-015
gb|D46634.1|D46634 RICS11426A Rice green shoot Oryza sativa... 74 1e-010
dbj|AK071683.1| Oryza sativa (japonica cultivar-group) cDNA... 70 2e-009
dbj|AK099177.1| Oryza sativa (japonica cultivar-group) cDNA... 70 2e-009
dbj|AP005544.3| Oryza sativa (japonica cultivar-group) geno... 70 2e-009
gb|AACV01002223.1| Oryza sativa (japonica cultivar-group) c... 70 2e-009
ref|XM_483787.1| Oryza sativa (japonica cultivar-group), mRNA 70 2e-009
ref|XM_507340.1| PREDICTED Oryza sativa (japonica cultivar-... 70 2e-009
ref|NT_107239.1| Oryza sativa (japonica cultivar-group) 70 2e-009
gb|CH401168.1| Oryza sativa (japonica cultivar-group) chrom... 70 2e-009
dbj|AP008214.1| Oryza sativa (japonica cultivar-group) geno... 70 2e-009
dbj|AG212291.1| Oryza sativa (japonica cultivar-group) DNA,... 66 2e-008
gb|AU098334.1|AU098334 AU098334 Rice cDNA from immature lea... 66 2e-008
dbj|AP004177.3| Oryza sativa (japonica cultivar-group) geno... 66 2e-008
dbj|AP005865.3| Oryza sativa (japonica cultivar-group) geno... 66 2e-008
gb|AACV01004106.1| Oryza sativa (japonica cultivar-group) c... 66 2e-008
ref|XM_465336.1| Oryza sativa (japonica cultivar-group), mRNA 66 2e-008
ref|NT_107178.1| Oryza sativa (japonica cultivar-group) 66 2e-008
gb|CH401169.1| Oryza sativa (japonica cultivar-group) chrom... 66 2e-008
gb|CM000139.1| Oryza sativa (japonica cultivar-group) chrom... 66 2e-008
dbj|AP008208.1| Oryza sativa (japonica cultivar-group) geno... 66 2e-008
gb|CL517486.1|CL517486 DAA4E05 Flanking Sequence Tag of Ory... 60 1e-006
dbj|AK106679.1| Oryza sativa (japonica cultivar-group) cDNA... 54 9e-005
dbj|AP004090.3| Oryza sativa (japonica cultivar-group) geno... 54 9e-005
gb|AACV01003203.1| Oryza sativa (japonica cultivar-group) c... 54 9e-005
ref|XM_463858.1| Oryza sativa (japonica cultivar-group), mRNA 54 9e-005
dbj|AP004867.2| Oryza sativa (japonica cultivar-group) geno... 54 9e-005
ref|NT_107175.1| Oryza sativa (japonica cultivar-group) 54 9e-005
gb|AACV01004780.1| Oryza sativa (japonica cultivar-group) c... 48 0.006
dbj|AP005800.3| Oryza sativa (japonica cultivar-group) geno... 48 0.006
ref|NT_107180.1| Oryza sativa (japonica cultivar-group) 48 0.006
gb|CH401170.1| Oryza sativa (japonica cultivar-group) chrom... 48 0.006
>gb|CB684623.1|CB684623 OSJNEf14F09.f OSJNEf Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEf14F09 5', mRNA sequence
Length = 780
Score = 420 bits (212), Expect = e-115
Identities = 392/452 (86%)
Strand = Plus / Plus
Query: 141 tgagaagctgaagctgctcgtcggagtgctggccctgcagttccttctggcagggttcca 200
||||||| |||||||| || | ||||||||||||||||||||||| || ||||| |||||
Sbjct: 105 tgagaaggtgaagctgttcataggagtgctggccctgcagttcctgcttgcaggattcca 164
Query: 201 catcgtctccagggcggcgctcaacatgggcatcagcgagatcgtgttcatggtgtacag 260
||| || |||||| || |||||||||||||||||| |||| |||||||| || || ||
Sbjct: 165 cattgtgagcagggcagcactcaacatgggcatcagcaagattgtgttcatcgtctatag 224
Query: 261 gaacctcatctccctcgccttgctcgctccgttcgcctacttcctcgagaagaaagacag 320
||||||||||||||||||||||||||| || |||||||||||||||||||||||||| ||
Sbjct: 225 gaacctcatctccctcgccttgctcgcgcccttcgcctacttcctcgagaagaaagatag 284
Query: 321 gccgccactcaccttctctttgctggtggagttcttcctgctagcgctgtgtgggataac 380
|| ||||| ||||||||||||||||||||||| || || ||||| ||||||||||||||
Sbjct: 285 accaccactgaccttctctttgctggtggagttttttcttctagcactgtgtgggataac 344
Query: 381 tgcgaaccagggcttctacctcctgggcctgtatcacctgtcaccaacctacgcctctgc 440
||| ||||| || ||||||||||| || ||||||||||| |||||||| || || |||||
Sbjct: 345 tgcaaaccaaggtttctacctcctagggctgtatcacctttcaccaacttatgcttctgc 404
Query: 441 gatacagaacaccgtccccgcgatcaccttcgtcatggccgctgtcctcaggctagagca 500
||||||||||| || || || |||||||| | |||||| || ||||||||||| |||||
Sbjct: 405 aatacagaacacagttcctgccatcacctttgccatggctgccgtcctcaggcttgagca 464
Query: 501 ggtggacctgagcaggaggcatgggctggccaaggtggtgggcacggtggtgagcatcgg 560
|| ||||| ||| |||||||||| ||||||||||||||||||||||||||||||| ||
Sbjct: 465 agtagacctaggcaagaggcatggggtggccaaggtggtgggcacggtggtgagcatagg 524
Query: 561 aggggccaccgtcataaccctgtacaagggcc 592
|| ||||| || ||||| || ||||||||||
Sbjct: 525 tggtgccacagtgataactctctacaagggcc 556
>gb|CB685239.1|CB685239 OSJNEf15H22.f OSJNEf Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEf15H22 5', mRNA sequence
Length = 692
Score = 420 bits (212), Expect = e-115
Identities = 392/452 (86%)
Strand = Plus / Plus
Query: 141 tgagaagctgaagctgctcgtcggagtgctggccctgcagttccttctggcagggttcca 200
||||||| |||||||| || | ||||||||||||||||||||||| || ||||| |||||
Sbjct: 122 tgagaaggtgaagctgttcataggagtgctggccctgcagttcctgcttgcaggattcca 181
Query: 201 catcgtctccagggcggcgctcaacatgggcatcagcgagatcgtgttcatggtgtacag 260
||| || |||||| || |||||||||||||||||| |||| |||||||| || || ||
Sbjct: 182 cattgtgagcagggcagcactcaacatgggcatcagcaagattgtgttcatcgtctatag 241
Query: 261 gaacctcatctccctcgccttgctcgctccgttcgcctacttcctcgagaagaaagacag 320
||||||||||||||||||||||||||| || |||||||||||||||||||||||||| ||
Sbjct: 242 gaacctcatctccctcgccttgctcgcgcccttcgcctacttcctcgagaagaaagatag 301
Query: 321 gccgccactcaccttctctttgctggtggagttcttcctgctagcgctgtgtgggataac 380
|| ||||| ||||||||||||||||||||||| || || ||||| ||||||||||||||
Sbjct: 302 accaccactgaccttctctttgctggtggagttttttcttctagcactgtgtgggataac 361
Query: 381 tgcgaaccagggcttctacctcctgggcctgtatcacctgtcaccaacctacgcctctgc 440
||| ||||| || ||||||||||| || ||||||||||| |||||||| || || |||||
Sbjct: 362 tgcaaaccaaggtttctacctcctagggctgtatcacctttcaccaacttatgcttctgc 421
Query: 441 gatacagaacaccgtccccgcgatcaccttcgtcatggccgctgtcctcaggctagagca 500
||||||||||| || || || |||||||| | |||||| || ||||||||||| |||||
Sbjct: 422 aatacagaacacagttcctgccatcacctttgccatggctgccgtcctcaggcttgagca 481
Query: 501 ggtggacctgagcaggaggcatgggctggccaaggtggtgggcacggtggtgagcatcgg 560
|| ||||| ||| |||||||||| ||||||||||||||||||||||||||||||| ||
Sbjct: 482 agtagacctaggcaagaggcatggggtggccaaggtggtgggcacggtggtgagcatagg 541
Query: 561 aggggccaccgtcataaccctgtacaagggcc 592
|| ||||| || ||||| || ||||||||||
Sbjct: 542 tggtgccacagtgataactctctacaagggcc 573
>dbj|AK061369.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-304-D10, full
insert sequence
Length = 1039
Score = 420 bits (212), Expect = e-115
Identities = 392/452 (86%)
Strand = Plus / Plus
Query: 141 tgagaagctgaagctgctcgtcggagtgctggccctgcagttccttctggcagggttcca 200
||||||| |||||||| || | ||||||||||||||||||||||| || ||||| |||||
Sbjct: 139 tgagaaggtgaagctgttcataggagtgctggccctgcagttcctgcttgcaggattcca 198
Query: 201 catcgtctccagggcggcgctcaacatgggcatcagcgagatcgtgttcatggtgtacag 260
||| || |||||| || |||||||||||||||||| |||| |||||||| || || ||
Sbjct: 199 cattgtgagcagggcagcactcaacatgggcatcagcaagattgtgttcatcgtctatag 258
Query: 261 gaacctcatctccctcgccttgctcgctccgttcgcctacttcctcgagaagaaagacag 320
||||||||||||||||||||||||||| || |||||||||||||||||||||||||| ||
Sbjct: 259 gaacctcatctccctcgccttgctcgcgcccttcgcctacttcctcgagaagaaagatag 318
Query: 321 gccgccactcaccttctctttgctggtggagttcttcctgctagcgctgtgtgggataac 380
|| ||||| ||||||||||||||||||||||| || || ||||| ||||||||||||||
Sbjct: 319 accaccactgaccttctctttgctggtggagttttttcttctagcactgtgtgggataac 378
Query: 381 tgcgaaccagggcttctacctcctgggcctgtatcacctgtcaccaacctacgcctctgc 440
||| ||||| || ||||||||||| || ||||||||||| |||||||| || || |||||
Sbjct: 379 tgcaaaccaaggtttctacctcctagggctgtatcacctttcaccaacttatgcttctgc 438
Query: 441 gatacagaacaccgtccccgcgatcaccttcgtcatggccgctgtcctcaggctagagca 500
||||||||||| || || || |||||||| | |||||| || ||||||||||| |||||
Sbjct: 439 aatacagaacacagttcctgccatcacctttgccatggctgccgtcctcaggcttgagca 498
Query: 501 ggtggacctgagcaggaggcatgggctggccaaggtggtgggcacggtggtgagcatcgg 560
|| ||||| ||| |||||||||| ||||||||||||||||||||||||||||||| ||
Sbjct: 499 agtagacctaggcaagaggcatggggtggccaaggtggtgggcacggtggtgagcatagg 558
Query: 561 aggggccaccgtcataaccctgtacaagggcc 592
|| ||||| || ||||| || ||||||||||
Sbjct: 559 tggtgccacagtgataactctctacaagggcc 590
>dbj|AK061406.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-306-A04, full
insert sequence
Length = 1488
Score = 420 bits (212), Expect = e-115
Identities = 392/452 (86%)
Strand = Plus / Plus
Query: 141 tgagaagctgaagctgctcgtcggagtgctggccctgcagttccttctggcagggttcca 200
||||||| |||||||| || | ||||||||||||||||||||||| || ||||| |||||
Sbjct: 131 tgagaaggtgaagctgttcataggagtgctggccctgcagttcctgcttgcaggattcca 190
Query: 201 catcgtctccagggcggcgctcaacatgggcatcagcgagatcgtgttcatggtgtacag 260
||| || |||||| || |||||||||||||||||| |||| |||||||| || || ||
Sbjct: 191 cattgtgagcagggcagcactcaacatgggcatcagcaagattgtgttcatcgtctatag 250
Query: 261 gaacctcatctccctcgccttgctcgctccgttcgcctacttcctcgagaagaaagacag 320
||||||||||||||||||||||||||| || |||||||||||||||||||||||||| ||
Sbjct: 251 gaacctcatctccctcgccttgctcgcgcccttcgcctacttcctcgagaagaaagatag 310
Query: 321 gccgccactcaccttctctttgctggtggagttcttcctgctagcgctgtgtgggataac 380
|| ||||| ||||||||||||||||||||||| || || ||||| ||||||||||||||
Sbjct: 311 accaccactgaccttctctttgctggtggagttttttcttctagcactgtgtgggataac 370
Query: 381 tgcgaaccagggcttctacctcctgggcctgtatcacctgtcaccaacctacgcctctgc 440
||| ||||| || ||||||||||| || ||||||||||| |||||||| || || |||||
Sbjct: 371 tgcaaaccaaggtttctacctcctagggctgtatcacctttcaccaacttatgcttctgc 430
Query: 441 gatacagaacaccgtccccgcgatcaccttcgtcatggccgctgtcctcaggctagagca 500
||||||||||| || || || |||||||| | |||||| || ||||||||||| |||||
Sbjct: 431 aatacagaacacagttcctgccatcacctttgccatggctgccgtcctcaggcttgagca 490
Query: 501 ggtggacctgagcaggaggcatgggctggccaaggtggtgggcacggtggtgagcatcgg 560
|| ||||| ||| |||||||||| ||||||||||||||||||||||||||||||| ||
Sbjct: 491 agtagacctaggcaagaggcatggggtggccaaggtggtgggcacggtggtgagcatagg 550
Query: 561 aggggccaccgtcataaccctgtacaagggcc 592
|| ||||| || ||||| || ||||||||||
Sbjct: 551 tggtgccacagtgataactctctacaagggcc 582
>dbj|AK104596.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-308-E02, full
insert sequence
Length = 1353
Score = 420 bits (212), Expect = e-115
Identities = 392/452 (86%)
Strand = Plus / Plus
Query: 141 tgagaagctgaagctgctcgtcggagtgctggccctgcagttccttctggcagggttcca 200
||||||| |||||||| || | ||||||||||||||||||||||| || ||||| |||||
Sbjct: 134 tgagaaggtgaagctgttcataggagtgctggccctgcagttcctgcttgcaggattcca 193
Query: 201 catcgtctccagggcggcgctcaacatgggcatcagcgagatcgtgttcatggtgtacag 260
||| || |||||| || |||||||||||||||||| |||| |||||||| || || ||
Sbjct: 194 cattgtgagcagggcagcactcaacatgggcatcagcaagattgtgttcatcgtctatag 253
Query: 261 gaacctcatctccctcgccttgctcgctccgttcgcctacttcctcgagaagaaagacag 320
||||||||||||||||||||||||||| || |||||||||||||||||||||||||| ||
Sbjct: 254 gaacctcatctccctcgccttgctcgcgcccttcgcctacttcctcgagaagaaagatag 313
Query: 321 gccgccactcaccttctctttgctggtggagttcttcctgctagcgctgtgtgggataac 380
|| ||||| ||||||||||||||||||||||| || || ||||| ||||||||||||||
Sbjct: 314 accaccactgaccttctctttgctggtggagttttttcttctagcactgtgtgggataac 373
Query: 381 tgcgaaccagggcttctacctcctgggcctgtatcacctgtcaccaacctacgcctctgc 440
||| ||||| || ||||||||||| || ||||||||||| |||||||| || || |||||
Sbjct: 374 tgcaaaccaaggtttctacctcctagggctgtatcacctttcaccaacttatgcttctgc 433
Query: 441 gatacagaacaccgtccccgcgatcaccttcgtcatggccgctgtcctcaggctagagca 500
||||||||||| || || || |||||||| | |||||| || ||||||||||| |||||
Sbjct: 434 aatacagaacacagttcctgccatcacctttgccatggctgccgtcctcaggcttgagca 493
Query: 501 ggtggacctgagcaggaggcatgggctggccaaggtggtgggcacggtggtgagcatcgg 560
|| ||||| ||| |||||||||| ||||||||||||||||||||||||||||||| ||
Sbjct: 494 agtagacctaggcaagaggcatggggtggccaaggtggtgggcacggtggtgagcatagg 553
Query: 561 aggggccaccgtcataaccctgtacaagggcc 592
|| ||||| || ||||| || ||||||||||
Sbjct: 554 tggtgccacagtgataactctctacaagggcc 585
>dbj|AK104611.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-309-C11, full
insert sequence
Length = 1369
Score = 420 bits (212), Expect = e-115
Identities = 392/452 (86%)
Strand = Plus / Plus
Query: 141 tgagaagctgaagctgctcgtcggagtgctggccctgcagttccttctggcagggttcca 200
||||||| |||||||| || | ||||||||||||||||||||||| || ||||| |||||
Sbjct: 137 tgagaaggtgaagctgttcataggagtgctggccctgcagttcctgcttgcaggattcca 196
Query: 201 catcgtctccagggcggcgctcaacatgggcatcagcgagatcgtgttcatggtgtacag 260
||| || |||||| || |||||||||||||||||| |||| |||||||| || || ||
Sbjct: 197 cattgtgagcagggcagcactcaacatgggcatcagcaagattgtgttcatcgtctatag 256
Query: 261 gaacctcatctccctcgccttgctcgctccgttcgcctacttcctcgagaagaaagacag 320
||||||||||||||||||||||||||| || |||||||||||||||||||||||||| ||
Sbjct: 257 gaacctcatctccctcgccttgctcgcgcccttcgcctacttcctcgagaagaaagatag 316
Query: 321 gccgccactcaccttctctttgctggtggagttcttcctgctagcgctgtgtgggataac 380
|| ||||| ||||||||||||||||||||||| || || ||||| ||||||||||||||
Sbjct: 317 accaccactgaccttctctttgctggtggagttttttcttctagcactgtgtgggataac 376
Query: 381 tgcgaaccagggcttctacctcctgggcctgtatcacctgtcaccaacctacgcctctgc 440
||| ||||| || ||||||||||| || ||||||||||| |||||||| || || |||||
Sbjct: 377 tgcaaaccaaggtttctacctcctagggctgtatcacctttcaccaacttatgcttctgc 436
Query: 441 gatacagaacaccgtccccgcgatcaccttcgtcatggccgctgtcctcaggctagagca 500
||||||||||| || || || |||||||| | |||||| || ||||||||||| |||||
Sbjct: 437 aatacagaacacagttcctgccatcacctttgccatggctgccgtcctcaggcttgagca 496
Query: 501 ggtggacctgagcaggaggcatgggctggccaaggtggtgggcacggtggtgagcatcgg 560
|| ||||| ||| |||||||||| ||||||||||||||||||||||||||||||| ||
Sbjct: 497 agtagacctaggcaagaggcatggggtggccaaggtggtgggcacggtggtgagcatagg 556
Query: 561 aggggccaccgtcataaccctgtacaagggcc 592
|| ||||| || ||||| || ||||||||||
Sbjct: 557 tggtgccacagtgataactctctacaagggcc 588
>ref|NM_184112.2| Oryza sativa (japonica cultivar-group), mRNA
Length = 1353
Score = 420 bits (212), Expect = e-115
Identities = 392/452 (86%)
Strand = Plus / Plus
Query: 141 tgagaagctgaagctgctcgtcggagtgctggccctgcagttccttctggcagggttcca 200
||||||| |||||||| || | ||||||||||||||||||||||| || ||||| |||||
Sbjct: 134 tgagaaggtgaagctgttcataggagtgctggccctgcagttcctgcttgcaggattcca 193
Query: 201 catcgtctccagggcggcgctcaacatgggcatcagcgagatcgtgttcatggtgtacag 260
||| || |||||| || |||||||||||||||||| |||| |||||||| || || ||
Sbjct: 194 cattgtgagcagggcagcactcaacatgggcatcagcaagattgtgttcatcgtctatag 253
Query: 261 gaacctcatctccctcgccttgctcgctccgttcgcctacttcctcgagaagaaagacag 320
||||||||||||||||||||||||||| || |||||||||||||||||||||||||| ||
Sbjct: 254 gaacctcatctccctcgccttgctcgcgcccttcgcctacttcctcgagaagaaagatag 313
Query: 321 gccgccactcaccttctctttgctggtggagttcttcctgctagcgctgtgtgggataac 380
|| ||||| ||||||||||||||||||||||| || || ||||| ||||||||||||||
Sbjct: 314 accaccactgaccttctctttgctggtggagttttttcttctagcactgtgtgggataac 373
Query: 381 tgcgaaccagggcttctacctcctgggcctgtatcacctgtcaccaacctacgcctctgc 440
||| ||||| || ||||||||||| || ||||||||||| |||||||| || || |||||
Sbjct: 374 tgcaaaccaaggtttctacctcctagggctgtatcacctttcaccaacttatgcttctgc 433
Query: 441 gatacagaacaccgtccccgcgatcaccttcgtcatggccgctgtcctcaggctagagca 500
||||||||||| || || || |||||||| | |||||| || ||||||||||| |||||
Sbjct: 434 aatacagaacacagttcctgccatcacctttgccatggctgccgtcctcaggcttgagca 493
Query: 501 ggtggacctgagcaggaggcatgggctggccaaggtggtgggcacggtggtgagcatcgg 560
|| ||||| ||| |||||||||| ||||||||||||||||||||||||||||||| ||
Sbjct: 494 agtagacctaggcaagaggcatggggtggccaaggtggtgggcacggtggtgagcatagg 553
Query: 561 aggggccaccgtcataaccctgtacaagggcc 592
|| ||||| || ||||| || ||||||||||
Sbjct: 554 tggtgccacagtgataactctctacaagggcc 585
>gb|D41026.1|D41026 RICS3278A Rice shoot Oryza sativa (japonica cultivar-group) cDNA,
mRNA sequence
Length = 497
Score = 327 bits (165), Expect = 4e-087
Identities = 342/400 (85%), Gaps = 1/400 (0%)
Strand = Plus / Plus
Query: 141 tgagaagctgaagctgctcgtcggagtgctggccctgcagttccttctggcagggttcca 200
||||||| |||||||| || | ||||||||||||||||||||||| || ||||| |||||
Sbjct: 98 tgagaaggtgaagctgttcataggagtgctggccctgcagttcctgcttgcaggattcca 157
Query: 201 catcgtctccagggcggcgctcaacatgggcatcagcgagatcgtgttcatggtgtacag 260
||| || |||||| || |||||||||||||||||| |||| |||||||| || || ||
Sbjct: 158 cattgtgagcagggcagcactcaacatgggcatcagcaagattgtgttcatcgtctatag 217
Query: 261 gaacctcatctccctcgccttgctcgctccgttcgcctacttcctcgagaagaaagacag 320
||||||||||||||||||||||||||| || |||||||||||||||||||||||||| ||
Sbjct: 218 gaacctcatctccctcgccttgctcgcgcccttcgcctacttcctcgagaagaaagatag 277
Query: 321 gccgccactcaccttctctttgctggtggagttcttcctgctagcgctgtgtgggataac 380
|| ||||| ||||||||||||||||||||||| || || ||||| ||||||||||||||
Sbjct: 278 accaccactgaccttctctttgctggtggagttttttcttctagcactgtgtgggataac 337
Query: 381 tgcgaaccagggcttctacctcctgggcctgtatcacctgtcaccaacctacgcctctgc 440
||| ||||| || ||||||||||| || ||||||||||| |||||||| || | |||||
Sbjct: 338 tgcaaaccaaggtttctacctcctagggctgtatcacctttcaccaacttatggttctgc 397
Query: 441 gatac-agaacaccgtccccgcgatcaccttcgtcatggccgctgtcctcaggctagagc 499
|||| ||||||| || | || |||||||| | ||||| || ||||||||||| ||||
Sbjct: 398 aatacaagaacacagttnctgccatcacctttgccatggttgccgtcctcaggcttgagc 457
Query: 500 aggtggacctgagcaggaggcatgggctggccaaggtggt 539
| || | ||| ||| |||||||||| |||||||||||||
Sbjct: 458 aagtaggcctaggcaagaggcatggggtggccaaggtggt 497
>gb|CF277122.1|CF277122 14ETL--02-I15.b1 Rice etiolated leaf plasmid cDNA library (14ETL)
Oryza sativa (japonica cultivar-group) cDNA clone
14ETL--02-I15, mRNA sequence
Length = 506
Score = 327 bits (165), Expect = 4e-087
Identities = 319/369 (86%), Gaps = 1/369 (0%)
Strand = Plus / Plus
Query: 141 tgagaagctgaagctgctcgtcggagtgctggccctgcagttccttctggcagggttcca 200
||||||| |||||||| || | ||| ||||||||||||||||||| || ||||| |||||
Sbjct: 131 tgagaaggtgaagctgttc-taggaatgctggccctgcagttcctgcttgcaggattcca 189
Query: 201 catcgtctccagggcggcgctcaacatgggcatcagcgagatcgtgttcatggtgtacag 260
||| || |||||| || |||||||||||||||||| |||| |||||||| || || ||
Sbjct: 190 cattgtgagcagggcagcactcaacatgggcatcagcaagattgtgttcatcgtctatag 249
Query: 261 gaacctcatctccctcgccttgctcgctccgttcgcctacttcctcgagaagaaagacag 320
||||||||||||||||||||||||||| || |||||||||||||||||||||||||| ||
Sbjct: 250 gaacctcatctccctcgccttgctcgcgcccttcgcctacttcctcgagaagaaagatag 309
Query: 321 gccgccactcaccttctctttgctggtggagttcttcctgctagcgctgtgtgggataac 380
|| ||||| ||||||||||||||||||||||| || || ||||| ||||||||||||||
Sbjct: 310 accaccactgaccttctctttgctggtggagttttttcttctagcactgtgtgggataac 369
Query: 381 tgcgaaccagggcttctacctcctgggcctgtatcacctgtcaccaacctacgcctctgc 440
||| ||||| || ||||||||||| || ||||||||||| |||||||| || || |||||
Sbjct: 370 tgcaaaccaaggtttctacctcctagggctgtatcacctttcaccaacttatgcttctgc 429
Query: 441 gatacagaacaccgtccccgcgatcaccttcgtcatggccgctgtcctcaggctagagca 500
||||||||||| || || || |||||||| | |||||| || ||||||||||| |||||
Sbjct: 430 aatacagaacacagttcctgccatcacctttgccatggctgccgtcctcaggcttgagca 489
Query: 501 ggtggacct 509
|| |||||
Sbjct: 490 agtagacct 498
>gb|D39891.2|D39891 RICS1543A Rice shoot Oryza sativa (japonica cultivar-group) cDNA
clone S1543, mRNA sequence
Length = 463
Score = 321 bits (162), Expect = 3e-085
Identities = 288/330 (87%)
Strand = Plus / Plus
Query: 141 tgagaagctgaagctgctcgtcggagtgctggccctgcagttccttctggcagggttcca 200
||||||| |||||||| || | ||||||||||||||||||||||| || ||||| |||||
Sbjct: 126 tgagaaggtgaagctgttcataggagtgctggccctgcagttcctgcttgcaggattcca 185
Query: 201 catcgtctccagggcggcgctcaacatgggcatcagcgagatcgtgttcatggtgtacag 260
||| || |||||| || |||||||||||||||||| |||| |||||||| || || ||
Sbjct: 186 cattgtgagcagggcagcactcaacatgggcatcagcaagattgtgttcatcgtctatag 245
Query: 261 gaacctcatctccctcgccttgctcgctccgttcgcctacttcctcgagaagaaagacag 320
||||||||||||||||||||||||||| || |||||||||||||||||||||||||| ||
Sbjct: 246 gaacctcatctccctcgccttgctcgcgcccttcgcctacttcctcgagaagaaagatag 305
Query: 321 gccgccactcaccttctctttgctggtggagttcttcctgctagcgctgtgtgggataac 380
|| ||||| ||||||||||||||||||||||| || || ||||| ||||||||||||||
Sbjct: 306 accaccactgaccttctctttgctggtggagttttttcttctagcactgtgtgggataac 365
Query: 381 tgcgaaccagggcttctacctcctgggcctgtatcacctgtcaccaacctacgcctctgc 440
||| ||||| || ||||||||||| || ||||||||||| |||||||| || || |||||
Sbjct: 366 tgcaaaccaaggtttctacctcctagggctgtatcacctttcaccaacttatgcttctgc 425
Query: 441 gatacagaacaccgtccccgcgatcacctt 470
||||||||||| || || || ||||||||
Sbjct: 426 aatacagaacacagttcctgccatcacctt 455
>gb|D41071.1|D41071 RICS3336A Rice shoot Oryza sativa (japonica cultivar-group) cDNA,
mRNA sequence
Length = 459
Score = 287 bits (145), Expect = 4e-075
Identities = 254/289 (87%), Gaps = 1/289 (0%)
Strand = Plus / Plus
Query: 141 tgagaagctgaagctgctcgtcggagtgctggccctgcagttccttctggcagggttcca 200
||||||| |||||||| || | ||||||||||||||||||||||| || ||||| |||||
Sbjct: 124 tgagaaggtgaagctgttcataggagtgctggccctgcagttcctgcttgcaggattcca 183
Query: 201 catcgtctccagggcggcgctcaacatgggcatcagcgagatcgtgttcatggtgtacag 260
||| || |||||| || |||||||||||||||||| |||| |||||||| || || ||
Sbjct: 184 cattgtgagcagggcagcactcaacatgggcatcagcaagattgtgttcatcgtctatag 243
Query: 261 gaacctcatctccctcgccttgctcgctccgttcgcctacttcctcgagaagaaagacag 320
||||||||||||||||||||||||||| || |||||||||||||||||||||||||| ||
Sbjct: 244 gaacctcatctccctcgccttgctcgcgcccttcgcctacttcctcgagaagaaagatag 303
Query: 321 gccgccactcaccttctctttgctggtggagttcttcctgctagcgctgtgtgggataac 380
|| ||||| ||||||||||||||||||||||| || || ||||| ||||||||||||||
Sbjct: 304 accaccactgaccttctctttgctggtggagttttttcttctagcactgtgtgggataac 363
Query: 381 tgcgaaccagggcttctacct-cctgggcctgtatcacctgtcaccaac 428
||| ||||| || |||||||| ||| || ||||||||||| ||||||||
Sbjct: 364 tgcaaaccaaggtttctacctncctagggctgtatcacctttcaccaac 412
>gb|D41098.1|D41098 RICS3368A Rice shoot Oryza sativa (japonica cultivar-group) cDNA,
mRNA sequence
Length = 406
Score = 283 bits (143), Expect = 6e-074
Identities = 251/288 (87%)
Strand = Plus / Plus
Query: 141 tgagaagctgaagctgctcgtcggagtgctggccctgcagttccttctggcagggttcca 200
||||||| |||||||| || | ||||||||||||||||||||||| || ||||| |||||
Sbjct: 98 tgagaaggtgaagctgttcataggagtgctggccctgcagttcctgcttgcaggattcca 157
Query: 201 catcgtctccagggcggcgctcaacatgggcatcagcgagatcgtgttcatggtgtacag 260
||| || || ||| || |||||||||||||||||| |||| |||||||| || || ||
Sbjct: 158 cattgtgagcanggcagcactcaacatgggcatcagcaagattgtgttcatcgtctatag 217
Query: 261 gaacctcatctccctcgccttgctcgctccgttcgcctacttcctcgagaagaaagacag 320
||||||||||||||||||||||||||| | |||||||||||||||||||||||||| ||
Sbjct: 218 gaacctcatctccctcgccttgctcgcgnccttcgcctacttcctcgagaagaaagatag 277
Query: 321 gccgccactcaccttctctttgctggtggagttcttcctgctagcgctgtgtgggataac 380
|| ||||| ||||||||||||||||||||||| || || ||||| ||||||||||||||
Sbjct: 278 accaccactgaccttctctttgctggtggagttttttcttctagcactgtgtgggataac 337
Query: 381 tgcgaaccagggcttctacctcctgggcctgtatcacctgtcaccaac 428
||| ||||| || ||||||||||| || |||||||| || ||||||||
Sbjct: 338 tgcaaaccaaggtttctacctcctagggctgtatcanctttcaccaac 385
>dbj|AK099425.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013010E01, full
insert sequence
Length = 1185
Score = 242 bits (122), Expect = 2e-061
Identities = 242/282 (85%)
Strand = Plus / Plus
Query: 311 agaaagacaggccgccactcaccttctctttgctggtggagttcttcctgctagcgctgt 370
||||||| || || ||||| ||||||||||||||||||||||| || || ||||| ||||
Sbjct: 1 agaaagatagaccaccactgaccttctctttgctggtggagttttttcttctagcactgt 60
Query: 371 gtgggataactgcgaaccagggcttctacctcctgggcctgtatcacctgtcaccaacct 430
||||||||||||| ||||| || ||||||||||| || ||||||||||| |||||||| |
Sbjct: 61 gtgggataactgcaaaccaaggtttctacctcctagggctgtatcacctttcaccaactt 120
Query: 431 acgcctctgcgatacagaacaccgtccccgcgatcaccttcgtcatggccgctgtcctca 490
| || ||||| ||||||||||| || || || |||||||| | |||||| || |||||||
Sbjct: 121 atgcttctgcaatacagaacacagttcctgccatcacctttgccatggctgccgtcctca 180
Query: 491 ggctagagcaggtggacctgagcaggaggcatgggctggccaaggtggtgggcacggtgg 550
|||| ||||| || ||||| ||| |||||||||| ||||||||||||||||||||||||
Sbjct: 181 ggcttgagcaagtagacctaggcaagaggcatggggtggccaaggtggtgggcacggtgg 240
Query: 551 tgagcatcggaggggccaccgtcataaccctgtacaagggcc 592
||||||| || || ||||| || ||||| || ||||||||||
Sbjct: 241 tgagcataggtggtgccacagtgataactctctacaagggcc 282
>gb|D40164.1|D40164 RICS1944A Rice shoot Oryza sativa (japonica cultivar-group) cDNA,
mRNA sequence
Length = 407
Score = 234 bits (118), Expect = 5e-059
Identities = 228/263 (86%), Gaps = 2/263 (0%)
Strand = Plus / Plus
Query: 141 tgagaagctgaagctgctcgtcggagtgctggccctgcagttccttctggcagggttcca 200
||||||| |||||||| || | || |||||||||||||||||||| || |||| |||||
Sbjct: 124 tgagaaggtgaagctgttcataggngtgctggccctgcagttcctgcttgcagaattcca 183
Query: 201 catcgtctccagggcggcgctcaacatgggcatcagcgagatcgtgttcatggtgtacag 260
||| || |||||| || |||||||||||||||||| |||| |||||||| || || ||
Sbjct: 184 cattgtgagcagggcagcactcaacatgggcatcagcaagattgtgttcatcgtctatag 243
Query: 261 gaacctcatctccctcgccttgctcgctccgttcgcctacttcctcgagaagaaagacag 320
||||||||||||||||||||||||||| || |||||||||||||||||||||||||| ||
Sbjct: 244 gaacctcatctccctcgccttgctcgcgcccttcgcctacttcctcgagaagaaagatag 303
Query: 321 gccgccactcaccttctctttgctggtggagttcttcctgctagcgctgtgtgggataac 380
|| ||||| ||||||||||||||||||||||| || || ||||| || |||||||||||
Sbjct: 304 accaccactgaccttctctttgctggtggagtt-tttcttctagcactntgtgggataac 362
Query: 381 tgcgaaccagggcttctacctcc 403
| | ||||| || ||||||||||
Sbjct: 363 tncaaaccaagg-ttctacctcc 384
>gb|D41005.1|D41005 RICS3247A Rice shoot Oryza sativa (japonica cultivar-group) cDNA,
mRNA sequence
Length = 358
Score = 232 bits (117), Expect = 2e-058
Identities = 207/236 (87%), Gaps = 1/236 (0%)
Strand = Plus / Plus
Query: 141 tgagaagctgaagctgctcgtcggagtgctggccctgcagttccttctggcagggttcca 200
||||||| |||||||| || | || |||||||||||||||||||| || ||||| |||||
Sbjct: 98 tgagaaggtgaagctgttcataggngtgctggccctgcagttcctgcttgcaggattcca 157
Query: 201 catcgtctccagggcggcgctcaacatgggcatcagcgagatcgtgttcatggtgtacag 260
||| || |||||| || |||||||||||||||||| |||| |||||||| || || ||
Sbjct: 158 cattgtgagcagggcagcactcaacatgggcatcagcaagattgtgttcatcgtctatag 217
Query: 261 gaacctcatctccctcgccttgctcgctccgttcgcctac-ttcctcgagaagaaagaca 319
||||||||||||||||||||||||||| || ||||||||| ||||||||||||||||| |
Sbjct: 218 gaacctcatctccctcgccttgctcgcgcccttcgcctactttcctcgagaagaaagata 277
Query: 320 ggccgccactcaccttctctttgctggtggagttcttcctgctagcgctgtgtggg 375
| || ||||| ||||||||||||||||||||||| ||||| ||||| |||||||||
Sbjct: 278 gaccaccactgaccttctctttgctggtggagtttttccttctagcactgtgtggg 333
>gb|D40172.1|D40172 RICS1956A Rice shoot Oryza sativa (japonica cultivar-group) cDNA,
mRNA sequence
Length = 337
Score = 212 bits (107), Expect = 2e-052
Identities = 188/214 (87%), Gaps = 1/214 (0%)
Strand = Plus / Plus
Query: 141 tgagaagctgaagctgctcgtcggagtgctggccctgcagttccttctggcagggttcca 200
||||||| |||||||| || | || |||||||||||||||||||| || ||||| |||||
Sbjct: 123 tgagaaggtgaagctgttcataggngtgctggccctgcagttcctgcttgcaggattcca 182
Query: 201 catcgtctccagggcggcgctcaacatgggcatcagcgagatcgtgttcatggtgtacag 260
||| || |||||| || |||||||||||||||||| |||| |||||||| || || ||
Sbjct: 183 cattgtgagcagggcagcactcaacatgggcatcagcaagattgtgttcatcgtctatag 242
Query: 261 gaacctcatctccctcgccttgctcgctccgttcgcctacttcctcgagaagaaagacag 320
||||||||||||||||||||||||||| || |||||||||||||||||||||||||| ||
Sbjct: 243 gaacctcatctccctcgccttgctcgcgcccttcgcctacttcctcgagaagaaagatag 302
Query: 321 gccgccactcaccttctc-tttgctggtggagtt 353
|| ||||| |||||||| |||||||||||||||
Sbjct: 303 accaccactgaccttctcttttgctggtggagtt 336
>gb|D40389.1|D40389 RICS2334A Rice shoot Oryza sativa (japonica cultivar-group) cDNA,
mRNA sequence
Length = 334
Score = 208 bits (105), Expect = 3e-051
Identities = 186/212 (87%), Gaps = 1/212 (0%)
Strand = Plus / Plus
Query: 141 tgagaagctgaagctgctcgtcggagtgctggccctgcagttccttctggcagggttcca 200
||||||| |||||||| || | || |||||||||||||||||||| || ||||| |||||
Sbjct: 123 tgagaaggtgaagctgttcataggngtgctggccctgcagttcctgcttgcaggattcca 182
Query: 201 catcgtctccagggcggcgctcaacatgggcatcagcgagatcgtgttcatggtgtacag 260
||| || |||||| || |||||||||||||||||| |||| |||||||| || || ||
Sbjct: 183 cattgtgagcagggcagcactcaacatgggcatcagcaagattgtgttcatcgtctatag 242
Query: 261 gaacctcatctccctcgccttgctcgctccgttcgcctacttcctcgagaagaaagacag 320
||||||||||||||||||||||||||| || |||||||||||||||||||||||||| ||
Sbjct: 243 gaacctcatctccctcgccttgctcgcgcccttcgcctacttcctcgagaagaaagatag 302
Query: 321 gccgccac-tcaccttctctttgctggtggag 351
|| |||| | |||||||||||||||||||||
Sbjct: 303 accaccacttgaccttctctttgctggtggag 334
>gb|D41717.1|D41717 RICS4395A Rice shoot Oryza sativa (japonica cultivar-group) cDNA,
mRNA sequence
Length = 460
Score = 202 bits (102), Expect = 2e-049
Identities = 210/246 (85%)
Strand = Plus / Plus
Query: 347 tggagttcttcctgctagcgctgtgtgggataactgcgaaccagggcttctacctcctgg 406
||||||| || || ||||| ||||||||||||||||| ||||| || ||||||||||| |
Sbjct: 1 tggagttttttcttctagcactgtgtgggataactgcaaaccaaggtttctacctcctag 60
Query: 407 gcctgtatcacctgtcaccaacctacgcctctgcgatacagaacaccgtccccgcgatca 466
| ||||||||||| |||||||| || || ||||| ||||||||||| || || || ||||
Sbjct: 61 ggctgtatcacctttcaccaacttatgcttctgcaatacagaacacagttcctgccatca 120
Query: 467 ccttcgtcatggccgctgtcctcaggctagagcaggtggacctgagcaggaggcatgggc 526
|||| | |||||| || ||||||||||| ||||| || ||||| ||| ||||||||||
Sbjct: 121 cctttgccatggctgccgtcctcaggcttgagcaagtagacctaggcaagaggcatgggg 180
Query: 527 tggccaaggtggtgggcacggtggtgagcatcggaggggccaccgtcataaccctgtaca 586
||||||||||||||||||||||||||||||| || || ||||| || ||||| || ||||
Sbjct: 181 tggccaaggtggtgggcacggtggtgagcataggtggtgccacagtgataactctctaca 240
Query: 587 agggcc 592
||||||
Sbjct: 241 agggcc 246
>dbj|AP002747.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
clone:P0698G03
Length = 147857
Score = 182 bits (92), Expect = 2e-043
Identities = 152/172 (88%)
Strand = Plus / Plus
Query: 141 tgagaagctgaagctgctcgtcggagtgctggccctgcagttccttctggcagggttcca 200
||||||| |||||||| || | ||||||||||||||||||||||| || ||||| |||||
Sbjct: 144842 tgagaaggtgaagctgttcataggagtgctggccctgcagttcctgcttgcaggattcca 144901
Query: 201 catcgtctccagggcggcgctcaacatgggcatcagcgagatcgtgttcatggtgtacag 260
||| || |||||| || |||||||||||||||||| |||| |||||||| || || ||
Sbjct: 144902 cattgtgagcagggcagcactcaacatgggcatcagcaagattgtgttcatcgtctatag 144961
Query: 261 gaacctcatctccctcgccttgctcgctccgttcgcctacttcctcgagaag 312
||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct: 144962 gaacctcatctccctcgccttgctcgcgcccttcgcctacttcctcgagaag 145013
Score = 95.6 bits (48), Expect = 3e-017
Identities = 90/104 (86%)
Strand = Plus / Plus
Query: 489 caggctagagcaggtggacctgagcaggaggcatgggctggccaaggtggtgggcacggt 548
|||||| ||||| || ||||| ||| |||||||||| ||||||||||||||||||||||
Sbjct: 145531 caggcttgagcaagtagacctaggcaagaggcatggggtggccaaggtggtgggcacggt 145590
Query: 549 ggtgagcatcggaggggccaccgtcataaccctgtacaagggcc 592
||||||||| || || ||||| || ||||| || ||||||||||
Sbjct: 145591 ggtgagcataggtggtgccacagtgataactctctacaagggcc 145634
Score = 93.7 bits (47), Expect = 1e-016
Identities = 101/119 (84%)
Strand = Plus / Plus
Query: 374 ggataactgcgaaccagggcttctacctcctgggcctgtatcacctgtcaccaacctacg 433
|||||||||| ||||| || ||||||||||| || ||||||||||| |||||||| || |
Sbjct: 145287 ggataactgcaaaccaaggtttctacctcctagggctgtatcacctttcaccaacttatg 145346
Query: 434 cctctgcgatacagaacaccgtccccgcgatcaccttcgtcatggccgctgtcctcagg 492
| ||||| ||||||||||| || || || |||||||| | |||||| || |||||||||
Sbjct: 145347 cttctgcaatacagaacacagttcctgccatcacctttgccatggctgccgtcctcagg 145405
Score = 63.9 bits (32), Expect = 1e-007
Identities = 56/64 (87%)
Strand = Plus / Plus
Query: 312 gaaagacaggccgccactcaccttctctttgctggtggagttcttcctgctagcgctgtg 371
|||||| || || ||||| ||||||||||||||||||||||| || || ||||| |||||
Sbjct: 145131 gaaagatagaccaccactgaccttctctttgctggtggagttttttcttctagcactgtg 145190
Query: 372 tggg 375
||||
Sbjct: 145191 tggg 145194
>dbj|AP002541.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
clone:P0494A10
Length = 145576
Score = 182 bits (92), Expect = 2e-043
Identities = 152/172 (88%)
Strand = Plus / Plus
Query: 141 tgagaagctgaagctgctcgtcggagtgctggccctgcagttccttctggcagggttcca 200
||||||| |||||||| || | ||||||||||||||||||||||| || ||||| |||||
Sbjct: 47065 tgagaaggtgaagctgttcataggagtgctggccctgcagttcctgcttgcaggattcca 47124
Query: 201 catcgtctccagggcggcgctcaacatgggcatcagcgagatcgtgttcatggtgtacag 260
||| || |||||| || |||||||||||||||||| |||| |||||||| || || ||
Sbjct: 47125 cattgtgagcagggcagcactcaacatgggcatcagcaagattgtgttcatcgtctatag 47184
Query: 261 gaacctcatctccctcgccttgctcgctccgttcgcctacttcctcgagaag 312
||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct: 47185 gaacctcatctccctcgccttgctcgcgcccttcgcctacttcctcgagaag 47236
Score = 95.6 bits (48), Expect = 3e-017
Identities = 90/104 (86%)
Strand = Plus / Plus
Query: 489 caggctagagcaggtggacctgagcaggaggcatgggctggccaaggtggtgggcacggt 548
|||||| ||||| || ||||| ||| |||||||||| ||||||||||||||||||||||
Sbjct: 47754 caggcttgagcaagtagacctaggcaagaggcatggggtggccaaggtggtgggcacggt 47813
Query: 549 ggtgagcatcggaggggccaccgtcataaccctgtacaagggcc 592
||||||||| || || ||||| || ||||| || ||||||||||
Sbjct: 47814 ggtgagcataggtggtgccacagtgataactctctacaagggcc 47857
Score = 93.7 bits (47), Expect = 1e-016
Identities = 101/119 (84%)
Strand = Plus / Plus
Query: 374 ggataactgcgaaccagggcttctacctcctgggcctgtatcacctgtcaccaacctacg 433
|||||||||| ||||| || ||||||||||| || ||||||||||| |||||||| || |
Sbjct: 47510 ggataactgcaaaccaaggtttctacctcctagggctgtatcacctttcaccaacttatg 47569
Query: 434 cctctgcgatacagaacaccgtccccgcgatcaccttcgtcatggccgctgtcctcagg 492
| ||||| ||||||||||| || || || |||||||| | |||||| || |||||||||
Sbjct: 47570 cttctgcaatacagaacacagttcctgccatcacctttgccatggctgccgtcctcagg 47628
Score = 63.9 bits (32), Expect = 1e-007
Identities = 56/64 (87%)
Strand = Plus / Plus
Query: 312 gaaagacaggccgccactcaccttctctttgctggtggagttcttcctgctagcgctgtg 371
|||||| || || ||||| ||||||||||||||||||||||| || || ||||| |||||
Sbjct: 47354 gaaagatagaccaccactgaccttctctttgctggtggagttttttcttctagcactgtg 47413
Query: 372 tggg 375
||||
Sbjct: 47414 tggg 47417
>gb|AACV01000079.1| Oryza sativa (japonica cultivar-group) chromosome 1 Ctg000079, whole
genome shotgun sequence
Length = 67427
Score = 182 bits (92), Expect = 2e-043
Identities = 152/172 (88%)
Strand = Plus / Minus
Query: 141 tgagaagctgaagctgctcgtcggagtgctggccctgcagttccttctggcagggttcca 200
||||||| |||||||| || | ||||||||||||||||||||||| || ||||| |||||
Sbjct: 39087 tgagaaggtgaagctgttcataggagtgctggccctgcagttcctgcttgcaggattcca 39028
Query: 201 catcgtctccagggcggcgctcaacatgggcatcagcgagatcgtgttcatggtgtacag 260
||| || |||||| || |||||||||||||||||| |||| |||||||| || || ||
Sbjct: 39027 cattgtgagcagggcagcactcaacatgggcatcagcaagattgtgttcatcgtctatag 38968
Query: 261 gaacctcatctccctcgccttgctcgctccgttcgcctacttcctcgagaag 312
||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct: 38967 gaacctcatctccctcgccttgctcgcgcccttcgcctacttcctcgagaag 38916
Score = 95.6 bits (48), Expect = 3e-017
Identities = 90/104 (86%)
Strand = Plus / Minus
Query: 489 caggctagagcaggtggacctgagcaggaggcatgggctggccaaggtggtgggcacggt 548
|||||| ||||| || ||||| ||| |||||||||| ||||||||||||||||||||||
Sbjct: 38398 caggcttgagcaagtagacctaggcaagaggcatggggtggccaaggtggtgggcacggt 38339
Query: 549 ggtgagcatcggaggggccaccgtcataaccctgtacaagggcc 592
||||||||| || || ||||| || ||||| || ||||||||||
Sbjct: 38338 ggtgagcataggtggtgccacagtgataactctctacaagggcc 38295
Score = 93.7 bits (47), Expect = 1e-016
Identities = 101/119 (84%)
Strand = Plus / Minus
Query: 374 ggataactgcgaaccagggcttctacctcctgggcctgtatcacctgtcaccaacctacg 433
|||||||||| ||||| || ||||||||||| || ||||||||||| |||||||| || |
Sbjct: 38642 ggataactgcaaaccaaggtttctacctcctagggctgtatcacctttcaccaacttatg 38583
Query: 434 cctctgcgatacagaacaccgtccccgcgatcaccttcgtcatggccgctgtcctcagg 492
| ||||| ||||||||||| || || || |||||||| | |||||| || |||||||||
Sbjct: 38582 cttctgcaatacagaacacagttcctgccatcacctttgccatggctgccgtcctcagg 38524
Score = 63.9 bits (32), Expect = 1e-007
Identities = 56/64 (87%)
Strand = Plus / Minus
Query: 312 gaaagacaggccgccactcaccttctctttgctggtggagttcttcctgctagcgctgtg 371
|||||| || || ||||| ||||||||||||||||||||||| || || ||||| |||||
Sbjct: 38798 gaaagatagaccaccactgaccttctctttgctggtggagttttttcttctagcactgtg 38739
Query: 372 tggg 375
||||
Sbjct: 38738 tggg 38735
>dbj|BA000010.8| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43342410
Score = 182 bits (92), Expect = 2e-043
Identities = 152/172 (88%)
Strand = Plus / Plus
Query: 141 tgagaagctgaagctgctcgtcggagtgctggccctgcagttccttctggcagggttcca 200
||||||| |||||||| || | ||||||||||||||||||||||| || ||||| |||||
Sbjct: 1007199 tgagaaggtgaagctgttcataggagtgctggccctgcagttcctgcttgcaggattcca 1007258
Query: 201 catcgtctccagggcggcgctcaacatgggcatcagcgagatcgtgttcatggtgtacag 260
||| || |||||| || |||||||||||||||||| |||| |||||||| || || ||
Sbjct: 1007259 cattgtgagcagggcagcactcaacatgggcatcagcaagattgtgttcatcgtctatag 1007318
Query: 261 gaacctcatctccctcgccttgctcgctccgttcgcctacttcctcgagaag 312
||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct: 1007319 gaacctcatctccctcgccttgctcgcgcccttcgcctacttcctcgagaag 1007370
Score = 95.6 bits (48), Expect = 3e-017
Identities = 90/104 (86%)
Strand = Plus / Plus
Query: 489 caggctagagcaggtggacctgagcaggaggcatgggctggccaaggtggtgggcacggt 548
|||||| ||||| || ||||| ||| |||||||||| ||||||||||||||||||||||
Sbjct: 1007888 caggcttgagcaagtagacctaggcaagaggcatggggtggccaaggtggtgggcacggt 1007947
Query: 549 ggtgagcatcggaggggccaccgtcataaccctgtacaagggcc 592
||||||||| || || ||||| || ||||| || ||||||||||
Sbjct: 1007948 ggtgagcataggtggtgccacagtgataactctctacaagggcc 1007991
Score = 93.7 bits (47), Expect = 1e-016
Identities = 101/119 (84%)
Strand = Plus / Plus
Query: 374 ggataactgcgaaccagggcttctacctcctgggcctgtatcacctgtcaccaacctacg 433
|||||||||| ||||| || ||||||||||| || ||||||||||| |||||||| || |
Sbjct: 1007644 ggataactgcaaaccaaggtttctacctcctagggctgtatcacctttcaccaacttatg 1007703
Query: 434 cctctgcgatacagaacaccgtccccgcgatcaccttcgtcatggccgctgtcctcagg 492
| ||||| ||||||||||| || || || |||||||| | |||||| || |||||||||
Sbjct: 1007704 cttctgcaatacagaacacagttcctgccatcacctttgccatggctgccgtcctcagg 1007762
Score = 63.9 bits (32), Expect = 1e-007
Identities = 56/64 (87%)
Strand = Plus / Plus
Query: 312 gaaagacaggccgccactcaccttctctttgctggtggagttcttcctgctagcgctgtg 371
|||||| || || ||||| ||||||||||||||||||||||| || || ||||| |||||
Sbjct: 1007488 gaaagatagaccaccactgaccttctctttgctggtggagttttttcttctagcactgtg 1007547
Query: 372 tggg 375
||||
Sbjct: 1007548 tggg 1007551
>ref|NT_036312.3| Oryza sativa (japonica cultivar-group)
Length = 10050053
Score = 182 bits (92), Expect = 2e-043
Identities = 152/172 (88%)
Strand = Plus / Plus
Query: 141 tgagaagctgaagctgctcgtcggagtgctggccctgcagttccttctggcagggttcca 200
||||||| |||||||| || | ||||||||||||||||||||||| || ||||| |||||
Sbjct: 1007199 tgagaaggtgaagctgttcataggagtgctggccctgcagttcctgcttgcaggattcca 1007258
Query: 201 catcgtctccagggcggcgctcaacatgggcatcagcgagatcgtgttcatggtgtacag 260
||| || |||||| || |||||||||||||||||| |||| |||||||| || || ||
Sbjct: 1007259 cattgtgagcagggcagcactcaacatgggcatcagcaagattgtgttcatcgtctatag 1007318
Query: 261 gaacctcatctccctcgccttgctcgctccgttcgcctacttcctcgagaag 312
||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct: 1007319 gaacctcatctccctcgccttgctcgcgcccttcgcctacttcctcgagaag 1007370
Score = 95.6 bits (48), Expect = 3e-017
Identities = 90/104 (86%)
Strand = Plus / Plus
Query: 489 caggctagagcaggtggacctgagcaggaggcatgggctggccaaggtggtgggcacggt 548
|||||| ||||| || ||||| ||| |||||||||| ||||||||||||||||||||||
Sbjct: 1007888 caggcttgagcaagtagacctaggcaagaggcatggggtggccaaggtggtgggcacggt 1007947
Query: 549 ggtgagcatcggaggggccaccgtcataaccctgtacaagggcc 592
||||||||| || || ||||| || ||||| || ||||||||||
Sbjct: 1007948 ggtgagcataggtggtgccacagtgataactctctacaagggcc 1007991
Score = 93.7 bits (47), Expect = 1e-016
Identities = 101/119 (84%)
Strand = Plus / Plus
Query: 374 ggataactgcgaaccagggcttctacctcctgggcctgtatcacctgtcaccaacctacg 433
|||||||||| ||||| || ||||||||||| || ||||||||||| |||||||| || |
Sbjct: 1007644 ggataactgcaaaccaaggtttctacctcctagggctgtatcacctttcaccaacttatg 1007703
Query: 434 cctctgcgatacagaacaccgtccccgcgatcaccttcgtcatggccgctgtcctcagg 492
| ||||| ||||||||||| || || || |||||||| | |||||| || |||||||||
Sbjct: 1007704 cttctgcaatacagaacacagttcctgccatcacctttgccatggctgccgtcctcagg 1007762
Score = 63.9 bits (32), Expect = 1e-007
Identities = 56/64 (87%)
Strand = Plus / Plus
Query: 312 gaaagacaggccgccactcaccttctctttgctggtggagttcttcctgctagcgctgtg 371
|||||| || || ||||| ||||||||||||||||||||||| || || ||||| |||||
Sbjct: 1007488 gaaagatagaccaccactgaccttctctttgctggtggagttttttcttctagcactgtg 1007547
Query: 372 tggg 375
||||
Sbjct: 1007548 tggg 1007551
>gb|CH401164.1| Oryza sativa (japonica cultivar-group) chromosome 1 scaffold000001 genomic
scaffold, whole genome shotgun sequence
Length = 11616395
Score = 182 bits (92), Expect = 2e-043
Identities = 152/172 (88%)
Strand = Plus / Plus
Query: 141 tgagaagctgaagctgctcgtcggagtgctggccctgcagttccttctggcagggttcca 200
||||||| |||||||| || | ||||||||||||||||||||||| || ||||| |||||
Sbjct: 1027679 tgagaaggtgaagctgttcataggagtgctggccctgcagttcctgcttgcaggattcca 1027738
Query: 201 catcgtctccagggcggcgctcaacatgggcatcagcgagatcgtgttcatggtgtacag 260
||| || |||||| || |||||||||||||||||| |||| |||||||| || || ||
Sbjct: 1027739 cattgtgagcagggcagcactcaacatgggcatcagcaagattgtgttcatcgtctatag 1027798
Query: 261 gaacctcatctccctcgccttgctcgctccgttcgcctacttcctcgagaag 312
||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct: 1027799 gaacctcatctccctcgccttgctcgcgcccttcgcctacttcctcgagaag 1027850
Score = 95.6 bits (48), Expect = 3e-017
Identities = 90/104 (86%)
Strand = Plus / Plus
Query: 489 caggctagagcaggtggacctgagcaggaggcatgggctggccaaggtggtgggcacggt 548
|||||| ||||| || ||||| ||| |||||||||| ||||||||||||||||||||||
Sbjct: 1028368 caggcttgagcaagtagacctaggcaagaggcatggggtggccaaggtggtgggcacggt 1028427
Query: 549 ggtgagcatcggaggggccaccgtcataaccctgtacaagggcc 592
||||||||| || || ||||| || ||||| || ||||||||||
Sbjct: 1028428 ggtgagcataggtggtgccacagtgataactctctacaagggcc 1028471
Score = 93.7 bits (47), Expect = 1e-016
Identities = 101/119 (84%)
Strand = Plus / Plus
Query: 374 ggataactgcgaaccagggcttctacctcctgggcctgtatcacctgtcaccaacctacg 433
|||||||||| ||||| || ||||||||||| || ||||||||||| |||||||| || |
Sbjct: 1028124 ggataactgcaaaccaaggtttctacctcctagggctgtatcacctttcaccaacttatg 1028183
Query: 434 cctctgcgatacagaacaccgtccccgcgatcaccttcgtcatggccgctgtcctcagg 492
| ||||| ||||||||||| || || || |||||||| | |||||| || |||||||||
Sbjct: 1028184 cttctgcaatacagaacacagttcctgccatcacctttgccatggctgccgtcctcagg 1028242
Score = 63.9 bits (32), Expect = 1e-007
Identities = 56/64 (87%)
Strand = Plus / Plus
Query: 312 gaaagacaggccgccactcaccttctctttgctggtggagttcttcctgctagcgctgtg 371
|||||| || || ||||| ||||||||||||||||||||||| || || ||||| |||||
Sbjct: 1027968 gaaagatagaccaccactgaccttctctttgctggtggagttttttcttctagcactgtg 1028027
Query: 372 tggg 375
||||
Sbjct: 1028028 tggg 1028031
>gb|CM000138.1| Oryza sativa (japonica cultivar-group) chromosome 1, whole genome shotgun
sequence
Length = 42596331
Score = 182 bits (92), Expect = 2e-043
Identities = 152/172 (88%)
Strand = Plus / Plus
Query: 141 tgagaagctgaagctgctcgtcggagtgctggccctgcagttccttctggcagggttcca 200
||||||| |||||||| || | ||||||||||||||||||||||| || ||||| |||||
Sbjct: 1027679 tgagaaggtgaagctgttcataggagtgctggccctgcagttcctgcttgcaggattcca 1027738
Query: 201 catcgtctccagggcggcgctcaacatgggcatcagcgagatcgtgttcatggtgtacag 260
||| || |||||| || |||||||||||||||||| |||| |||||||| || || ||
Sbjct: 1027739 cattgtgagcagggcagcactcaacatgggcatcagcaagattgtgttcatcgtctatag 1027798
Query: 261 gaacctcatctccctcgccttgctcgctccgttcgcctacttcctcgagaag 312
||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct: 1027799 gaacctcatctccctcgccttgctcgcgcccttcgcctacttcctcgagaag 1027850
Score = 95.6 bits (48), Expect = 3e-017
Identities = 90/104 (86%)
Strand = Plus / Plus
Query: 489 caggctagagcaggtggacctgagcaggaggcatgggctggccaaggtggtgggcacggt 548
|||||| ||||| || ||||| ||| |||||||||| ||||||||||||||||||||||
Sbjct: 1028368 caggcttgagcaagtagacctaggcaagaggcatggggtggccaaggtggtgggcacggt 1028427
Query: 549 ggtgagcatcggaggggccaccgtcataaccctgtacaagggcc 592
||||||||| || || ||||| || ||||| || ||||||||||
Sbjct: 1028428 ggtgagcataggtggtgccacagtgataactctctacaagggcc 1028471
Score = 93.7 bits (47), Expect = 1e-016
Identities = 101/119 (84%)
Strand = Plus / Plus
Query: 374 ggataactgcgaaccagggcttctacctcctgggcctgtatcacctgtcaccaacctacg 433
|||||||||| ||||| || ||||||||||| || ||||||||||| |||||||| || |
Sbjct: 1028124 ggataactgcaaaccaaggtttctacctcctagggctgtatcacctttcaccaacttatg 1028183
Query: 434 cctctgcgatacagaacaccgtccccgcgatcaccttcgtcatggccgctgtcctcagg 492
| ||||| ||||||||||| || || || |||||||| | |||||| || |||||||||
Sbjct: 1028184 cttctgcaatacagaacacagttcctgccatcacctttgccatggctgccgtcctcagg 1028242
Score = 69.9 bits (35), Expect = 2e-009
Identities = 113/139 (81%)
Strand = Plus / Plus
Query: 344 tggtggagttcttcctgctagcgctgtgtgggataactgcgaaccagggcttctacctcc 403
||||| ||||||||||||| |||||||| || || || || |||||||||||||||||||
Sbjct: 29333858 tggtgcagttcttcctgctggcgctgtgcggcatcaccgccaaccagggcttctacctcc 29333917
Query: 404 tgggcctgtatcacctgtcaccaacctacgcctctgcgatacagaacaccgtccccgcga 463
| || || | || || || |||| |||||| || || |||||| ||||||| || |
Sbjct: 29333918 tcggactcgacaacacctccccgaccttcgcctccgccatccagaactccgtcccggcca 29333977
Query: 464 tcaccttcgtcatggccgc 482
||||||||| |||||||||
Sbjct: 29333978 tcaccttcgccatggccgc 29333996
Score = 63.9 bits (32), Expect = 1e-007
Identities = 56/64 (87%)
Strand = Plus / Plus
Query: 312 gaaagacaggccgccactcaccttctctttgctggtggagttcttcctgctagcgctgtg 371
|||||| || || ||||| ||||||||||||||||||||||| || || ||||| |||||
Sbjct: 1027968 gaaagatagaccaccactgaccttctctttgctggtggagttttttcttctagcactgtg 1028027
Query: 372 tggg 375
||||
Sbjct: 1028028 tggg 1028031
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43261740
Score = 182 bits (92), Expect = 2e-043
Identities = 152/172 (88%)
Strand = Plus / Plus
Query: 141 tgagaagctgaagctgctcgtcggagtgctggccctgcagttccttctggcagggttcca 200
||||||| |||||||| || | ||||||||||||||||||||||| || ||||| |||||
Sbjct: 1009397 tgagaaggtgaagctgttcataggagtgctggccctgcagttcctgcttgcaggattcca 1009456
Query: 201 catcgtctccagggcggcgctcaacatgggcatcagcgagatcgtgttcatggtgtacag 260
||| || |||||| || |||||||||||||||||| |||| |||||||| || || ||
Sbjct: 1009457 cattgtgagcagggcagcactcaacatgggcatcagcaagattgtgttcatcgtctatag 1009516
Query: 261 gaacctcatctccctcgccttgctcgctccgttcgcctacttcctcgagaag 312
||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct: 1009517 gaacctcatctccctcgccttgctcgcgcccttcgcctacttcctcgagaag 1009568
Score = 95.6 bits (48), Expect = 3e-017
Identities = 90/104 (86%)
Strand = Plus / Plus
Query: 489 caggctagagcaggtggacctgagcaggaggcatgggctggccaaggtggtgggcacggt 548
|||||| ||||| || ||||| ||| |||||||||| ||||||||||||||||||||||
Sbjct: 1010086 caggcttgagcaagtagacctaggcaagaggcatggggtggccaaggtggtgggcacggt 1010145
Query: 549 ggtgagcatcggaggggccaccgtcataaccctgtacaagggcc 592
||||||||| || || ||||| || ||||| || ||||||||||
Sbjct: 1010146 ggtgagcataggtggtgccacagtgataactctctacaagggcc 1010189
Score = 93.7 bits (47), Expect = 1e-016
Identities = 101/119 (84%)
Strand = Plus / Plus
Query: 374 ggataactgcgaaccagggcttctacctcctgggcctgtatcacctgtcaccaacctacg 433
|||||||||| ||||| || ||||||||||| || ||||||||||| |||||||| || |
Sbjct: 1009842 ggataactgcaaaccaaggtttctacctcctagggctgtatcacctttcaccaacttatg 1009901
Query: 434 cctctgcgatacagaacaccgtccccgcgatcaccttcgtcatggccgctgtcctcagg 492
| ||||| ||||||||||| || || || |||||||| | |||||| || |||||||||
Sbjct: 1009902 cttctgcaatacagaacacagttcctgccatcacctttgccatggctgccgtcctcagg 1009960
Score = 63.9 bits (32), Expect = 1e-007
Identities = 56/64 (87%)
Strand = Plus / Plus
Query: 312 gaaagacaggccgccactcaccttctctttgctggtggagttcttcctgctagcgctgtg 371
|||||| || || ||||| ||||||||||||||||||||||| || || ||||| |||||
Sbjct: 1009686 gaaagatagaccaccactgaccttctctttgctggtggagttttttcttctagcactgtg 1009745
Query: 372 tggg 375
||||
Sbjct: 1009746 tggg 1009749
>dbj|AG212362.1| Oryza sativa (japonica cultivar-group) DNA, clone:NF9876_0_502_1A,
3' flanking sequence of Tos17 insertion in rice strain
NF9876, genomic survey sequence
Length = 602
Score = 149 bits (75), Expect = 2e-033
Identities = 129/147 (87%)
Strand = Plus / Plus
Query: 141 tgagaagctgaagctgctcgtcggagtgctggccctgcagttccttctggcagggttcca 200
||||||| |||||||| || | ||||||||||||||||||||||| || ||||| |||||
Sbjct: 448 tgagaaggtgaagctgttcataggagtgctggccctgcagttcctgcttgcaggattcca 507
Query: 201 catcgtctccagggcggcgctcaacatgggcatcagcgagatcgtgttcatggtgtacag 260
||| || |||||| || |||||||||||||||||| |||| |||||||| || || ||
Sbjct: 508 cattgtgagcagggcagcactcaacatgggcatcagcaagattgtgttcatcgtctatag 567
Query: 261 gaacctcatctccctcgccttgctcgc 287
|||||||||||||||||||||||||||
Sbjct: 568 gaacctcatctccctcgccttgctcgc 594
>gb|CB685030.1|CB685030 OSJNEf15B24.f OSJNEf Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEf15B24 5', mRNA sequence
Length = 697
Score = 115 bits (58), Expect = 3e-023
Identities = 112/130 (86%)
Strand = Plus / Plus
Query: 463 atcaccttcgtcatggccgctgtcctcaggctagagcaggtggacctgagcaggaggcat 522
|||||||| | |||||| || ||||||||||| ||||| || ||||| ||| |||||||
Sbjct: 27 atcacctttgccatggctgccgtcctcaggcttgagcaagtagacctaggcaagaggcat 86
Query: 523 gggctggccaaggtggtgggcacggtggtgagcatcggaggggccaccgtcataaccctg 582
||| ||||||||||||||||||||||||||||||| || || ||||| || ||||| ||
Sbjct: 87 ggggtggccaaggtggtgggcacggtggtgagcataggtggtgccacagtgataactctc 146
Query: 583 tacaagggcc 592
||||||||||
Sbjct: 147 tacaagggcc 156
>dbj|AG212288.1| Oryza sativa (japonica cultivar-group) DNA, clone:NF7043_0_104_1A,
3' flanking sequence of Tos17 insertion in rice strain
NF7043, genomic survey sequence
Length = 285
Score = 95.6 bits (48), Expect = 3e-017
Identities = 90/104 (86%)
Strand = Plus / Plus
Query: 489 caggctagagcaggtggacctgagcaggaggcatgggctggccaaggtggtgggcacggt 548
|||||| ||||| || ||||| ||| |||||||||| ||||||||||||||||||||||
Sbjct: 124 caggcttgagcaagtagacctaggcaagaggcatggggtggccaaggtggtgggcacggt 183
Query: 549 ggtgagcatcggaggggccaccgtcataaccctgtacaagggcc 592
||||||||| || || ||||| || ||||| || ||||||||||
Sbjct: 184 ggtgagcataggtggtgccacagtgataactctctacaagggcc 227
>dbj|AB155272.1| Oryza sativa (japonica cultivar-group) DNA, clone:T33171T, 3'
flanking sequence of Tos17 insertion in rice strain
NG4560, genomic survey sequence
Length = 309
Score = 95.6 bits (48), Expect = 3e-017
Identities = 90/104 (86%)
Strand = Plus / Plus
Query: 489 caggctagagcaggtggacctgagcaggaggcatgggctggccaaggtggtgggcacggt 548
|||||| ||||| || ||||| ||| |||||||||| ||||||||||||||||||||||
Sbjct: 124 caggcttgagcaagtagacctaggcaagaggcatggggtggccaaggtggtgggcacggt 183
Query: 549 ggtgagcatcggaggggccaccgtcataaccctgtacaagggcc 592
||||||||| || || ||||| || ||||| || ||||||||||
Sbjct: 184 ggtgagcataggtggtgccacagtgataactctctacaagggcc 227
>dbj|AB156454.2| Oryza sativa (japonica cultivar-group) DNA, clone:T24005T, 3'
flanking sequence of Tos17 insertion in rice strain
NF7043, genomic survey sequence
Length = 464
Score = 89.7 bits (45), Expect = 2e-015
Identities = 89/104 (85%)
Strand = Plus / Plus
Query: 489 caggctagagcaggtggacctgagcaggaggcatgggctggccaaggtggtgggcacggt 548
|||||| ||||| || ||||| ||| ||||| |||| ||||||||||||||||||||||
Sbjct: 88 caggcttgagcaagtagacctaggcaagaggcntggggtggccaaggtggtgggcacggt 147
Query: 549 ggtgagcatcggaggggccaccgtcataaccctgtacaagggcc 592
||||||||| || || ||||| || ||||| || ||||||||||
Sbjct: 148 ggtgagcataggtggtgccacagtgataactctctacaagggcc 191
>gb|D46634.1|D46634 RICS11426A Rice green shoot Oryza sativa (japonica cultivar-group)
cDNA, mRNA sequence
Length = 233
Score = 73.8 bits (37), Expect = 1e-010
Identities = 91/110 (82%)
Strand = Plus / Plus
Query: 141 tgagaagctgaagctgctcgtcggagtgctggccctgcagttccttctggcagggttcca 200
||||||| |||||||| || | || || ||||||||||||||||| || ||||| |||||
Sbjct: 124 tgagaaggtgaagctgttcataggngttctggccctgcagttcctgcttgcaggattcca 183
Query: 201 catcgtctccagggcggcgctcaacatgggcatcagcgagatcgtgttca 250
||| | |||||| || |||||||||||||||||| || | |||||||
Sbjct: 184 cattntgagcagggcagcactcaacatgggcatcagcaagnttgtgttca 233
>dbj|AK071683.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023109M16, full
insert sequence
Length = 1601
Score = 69.9 bits (35), Expect = 2e-009
Identities = 113/139 (81%)
Strand = Plus / Plus
Query: 344 tggtggagttcttcctgctagcgctgtgtgggataactgcgaaccagggcttctacctcc 403
||||| ||||||||||||| |||||||| || || || || |||||||||||||||||||
Sbjct: 378 tggtgcagttcttcctgctggcgctgtgcggcatcaccgccaaccagggcttctacctcc 437
Query: 404 tgggcctgtatcacctgtcaccaacctacgcctctgcgatacagaacaccgtccccgcga 463
| || || | || || || |||| |||||| || || |||||| ||||||| || |
Sbjct: 438 tcggactcgacaacacctccccgaccttcgcctccgccatccagaactccgtcccggcca 497
Query: 464 tcaccttcgtcatggccgc 482
||||||||| |||||||||
Sbjct: 498 tcaccttcgccatggccgc 516
>dbj|AK099177.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023096J12, full
insert sequence
Length = 1595
Score = 69.9 bits (35), Expect = 2e-009
Identities = 113/139 (81%)
Strand = Plus / Plus
Query: 344 tggtggagttcttcctgctagcgctgtgtgggataactgcgaaccagggcttctacctcc 403
||||| ||||||||||||| |||||||| || || || || |||||||||||||||||||
Sbjct: 372 tggtgcagttcttcctgctggcgctgtgcggcatcaccgccaaccagggcttctacctcc 431
Query: 404 tgggcctgtatcacctgtcaccaacctacgcctctgcgatacagaacaccgtccccgcga 463
| || || | || || || |||| |||||| || || |||||| ||||||| || |
Sbjct: 432 tcggactcgacaacacctccccgaccttcgcctccgccatccagaactccgtcccggcca 491
Query: 464 tcaccttcgtcatggccgc 482
||||||||| |||||||||
Sbjct: 492 tcaccttcgccatggccgc 510
>dbj|AP005544.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
clone:P0604E01
Length = 159049
Score = 69.9 bits (35), Expect = 2e-009
Identities = 113/139 (81%)
Strand = Plus / Plus
Query: 344 tggtggagttcttcctgctagcgctgtgtgggataactgcgaaccagggcttctacctcc 403
||||| ||||||||||||| |||||||| || || || || |||||||||||||||||||
Sbjct: 109506 tggtgcagttcttcctgctggcgctgtgcggcatcaccgccaaccagggcttctacctcc 109565
Query: 404 tgggcctgtatcacctgtcaccaacctacgcctctgcgatacagaacaccgtccccgcga 463
| || || | || || || |||| |||||| || || |||||| ||||||| || |
Sbjct: 109566 tcggactcgacaacacctccccgaccttcgcctccgccatccagaactccgtcccggcca 109625
Query: 464 tcaccttcgtcatggccgc 482
||||||||| |||||||||
Sbjct: 109626 tcaccttcgccatggccgc 109644
>gb|AACV01002223.1| Oryza sativa (japonica cultivar-group) chromosome 1 Ctg002223, whole
genome shotgun sequence
Length = 13972
Score = 69.9 bits (35), Expect = 2e-009
Identities = 113/139 (81%)
Strand = Plus / Minus
Query: 344 tggtggagttcttcctgctagcgctgtgtgggataactgcgaaccagggcttctacctcc 403
||||| ||||||||||||| |||||||| || || || || |||||||||||||||||||
Sbjct: 9822 tggtgcagttcttcctgctggcgctgtgcggcatcaccgccaaccagggcttctacctcc 9763
Query: 404 tgggcctgtatcacctgtcaccaacctacgcctctgcgatacagaacaccgtccccgcga 463
| || || | || || || |||| |||||| || || |||||| ||||||| || |
Sbjct: 9762 tcggactcgacaacacctccccgaccttcgcctccgccatccagaactccgtcccggcca 9703
Query: 464 tcaccttcgtcatggccgc 482
||||||||| |||||||||
Sbjct: 9702 tcaccttcgccatggccgc 9684
>ref|XM_483787.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 1595
Score = 69.9 bits (35), Expect = 2e-009
Identities = 113/139 (81%)
Strand = Plus / Plus
Query: 344 tggtggagttcttcctgctagcgctgtgtgggataactgcgaaccagggcttctacctcc 403
||||| ||||||||||||| |||||||| || || || || |||||||||||||||||||
Sbjct: 372 tggtgcagttcttcctgctggcgctgtgcggcatcaccgccaaccagggcttctacctcc 431
Query: 404 tgggcctgtatcacctgtcaccaacctacgcctctgcgatacagaacaccgtccccgcga 463
| || || | || || || |||| |||||| || || |||||| ||||||| || |
Sbjct: 432 tcggactcgacaacacctccccgaccttcgcctccgccatccagaactccgtcccggcca 491
Query: 464 tcaccttcgtcatggccgc 482
||||||||| |||||||||
Sbjct: 492 tcaccttcgccatggccgc 510
>ref|XM_507340.1| PREDICTED Oryza sativa (japonica cultivar-group), P0604E01.39 mRNA
Length = 1601
Score = 69.9 bits (35), Expect = 2e-009
Identities = 113/139 (81%)
Strand = Plus / Plus
Query: 344 tggtggagttcttcctgctagcgctgtgtgggataactgcgaaccagggcttctacctcc 403
||||| ||||||||||||| |||||||| || || || || |||||||||||||||||||
Sbjct: 378 tggtgcagttcttcctgctggcgctgtgcggcatcaccgccaaccagggcttctacctcc 437
Query: 404 tgggcctgtatcacctgtcaccaacctacgcctctgcgatacagaacaccgtccccgcga 463
| || || | || || || |||| |||||| || || |||||| ||||||| || |
Sbjct: 438 tcggactcgacaacacctccccgaccttcgcctccgccatccagaactccgtcccggcca 497
Query: 464 tcaccttcgtcatggccgc 482
||||||||| |||||||||
Sbjct: 498 tcaccttcgccatggccgc 516
>ref|NT_107239.1| Oryza sativa (japonica cultivar-group)
Length = 28196693
Score = 69.9 bits (35), Expect = 2e-009
Identities = 113/139 (81%)
Strand = Plus / Plus
Query: 344 tggtggagttcttcctgctagcgctgtgtgggataactgcgaaccagggcttctacctcc 403
||||| ||||||||||||| |||||||| || || || || |||||||||||||||||||
Sbjct: 27873924 tggtgcagttcttcctgctggcgctgtgcggcatcaccgccaaccagggcttctacctcc 27873983
Query: 404 tgggcctgtatcacctgtcaccaacctacgcctctgcgatacagaacaccgtccccgcga 463
| || || | || || || |||| |||||| || || |||||| ||||||| || |
Sbjct: 27873984 tcggactcgacaacacctccccgaccttcgcctccgccatccagaactccgtcccggcca 27874043
Query: 464 tcaccttcgtcatggccgc 482
||||||||| |||||||||
Sbjct: 27874044 tcaccttcgccatggccgc 27874062
>gb|CH401168.1| Oryza sativa (japonica cultivar-group) chromosome 1 scaffold000005 genomic
scaffold, whole genome shotgun sequence
Length = 17394610
Score = 69.9 bits (35), Expect = 2e-009
Identities = 113/139 (81%)
Strand = Plus / Plus
Query: 344 tggtggagttcttcctgctagcgctgtgtgggataactgcgaaccagggcttctacctcc 403
||||| ||||||||||||| |||||||| || || || || |||||||||||||||||||
Sbjct: 4132137 tggtgcagttcttcctgctggcgctgtgcggcatcaccgccaaccagggcttctacctcc 4132196
Query: 404 tgggcctgtatcacctgtcaccaacctacgcctctgcgatacagaacaccgtccccgcga 463
| || || | || || || |||| |||||| || || |||||| ||||||| || |
Sbjct: 4132197 tcggactcgacaacacctccccgaccttcgcctccgccatccagaactccgtcccggcca 4132256
Query: 464 tcaccttcgtcatggccgc 482
||||||||| |||||||||
Sbjct: 4132257 tcaccttcgccatggccgc 4132275
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
sequence
Length = 28434780
Score = 69.9 bits (35), Expect = 2e-009
Identities = 113/139 (81%)
Strand = Plus / Plus
Query: 344 tggtggagttcttcctgctagcgctgtgtgggataactgcgaaccagggcttctacctcc 403
||||| ||||||||||||| |||||||| || || || || |||||||||||||||||||
Sbjct: 28112011 tggtgcagttcttcctgctggcgctgtgcggcatcaccgccaaccagggcttctacctcc 28112070
Query: 404 tgggcctgtatcacctgtcaccaacctacgcctctgcgatacagaacaccgtccccgcga 463
| || || | || || || |||| |||||| || || |||||| ||||||| || |
Sbjct: 28112071 tcggactcgacaacacctccccgaccttcgcctccgccatccagaactccgtcccggcca 28112130
Query: 464 tcaccttcgtcatggccgc 482
||||||||| |||||||||
Sbjct: 28112131 tcaccttcgccatggccgc 28112149
>dbj|AG212291.1| Oryza sativa (japonica cultivar-group) DNA, clone:NF7043_0_504_1A,
3' flanking sequence of Tos17 insertion in rice strain
NF7043, genomic survey sequence
Length = 582
Score = 65.9 bits (33), Expect = 2e-008
Identities = 85/104 (81%)
Strand = Plus / Plus
Query: 489 caggctagagcaggtggacctgagcaggaggcatgggctggccaaggtggtgggcacggt 548
|||||| ||||| || ||||| ||| |||||||||| ||| ||||||||||||||
Sbjct: 124 caggcttgagcaagtagacctaggcaagaggcatggggtggnnnnngtggtgggcacggt 183
Query: 549 ggtgagcatcggaggggccaccgtcataaccctgtacaagggcc 592
||||||||| || || ||||| || ||||| || ||||||||||
Sbjct: 184 ggtgagcataggtggtgccacagtgataactctctacaagggcc 227
>gb|AU098334.1|AU098334 AU098334 Rice cDNA from immature leaf including apical meristem
(under short day condition) Oryza sativa (japonica
cultivar-group) cDNA clone E60334, mRNA sequence
Length = 250
Score = 65.9 bits (33), Expect = 2e-008
Identities = 54/61 (88%)
Strand = Plus / Plus
Query: 344 tggtggagttcttcctgctagcgctgtgtgggataactgcgaaccagggcttctacctcc 403
||||| ||||||||||||| |||||||| || || || || |||||||||||||||||||
Sbjct: 88 tggtgcagttcttcctgctggcgctgtgcggcatcaccgccaaccagggcttctacctcc 147
Query: 404 t 404
|
Sbjct: 148 t 148
>dbj|AP004177.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
clone:OJ1116_E03
Length = 126845
Score = 65.9 bits (33), Expect = 2e-008
Identities = 90/109 (82%)
Strand = Plus / Minus
Query: 142 gagaagctgaagctgctcgtcggagtgctggccctgcagttccttctggcagggttccac 201
|||||| |||||||||| | || |||||||| ||||||| | || || ||||||||
Sbjct: 92446 gagaagttgaagctgctgctgggggtgctggcgctgcagtgctgcctcgcggggttccat 92387
Query: 202 atcgtctccagggcggcgctcaacatgggcatcagcgagatcgtgttca 250
|| || |||||||| || |||||||||||||||||| ||||||| ||||
Sbjct: 92386 attgtgtccagggcagccctcaacatgggcatcagcaagatcgtcttca 92338
>dbj|AP005865.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
clone:OSJNBb0037J12
Length = 118553
Score = 65.9 bits (33), Expect = 2e-008
Identities = 90/109 (82%)
Strand = Plus / Minus
Query: 142 gagaagctgaagctgctcgtcggagtgctggccctgcagttccttctggcagggttccac 201
|||||| |||||||||| | || |||||||| ||||||| | || || ||||||||
Sbjct: 21822 gagaagttgaagctgctgctgggggtgctggcgctgcagtgctgcctcgcggggttccat 21763
Query: 202 atcgtctccagggcggcgctcaacatgggcatcagcgagatcgtgttca 250
|| || |||||||| || |||||||||||||||||| ||||||| ||||
Sbjct: 21762 attgtgtccagggcagccctcaacatgggcatcagcaagatcgtcttca 21714
>gb|AACV01004106.1| Oryza sativa (japonica cultivar-group) chromosome 2 Ctg004106, whole
genome shotgun sequence
Length = 51014
Score = 65.9 bits (33), Expect = 2e-008
Identities = 90/109 (82%)
Strand = Plus / Minus
Query: 142 gagaagctgaagctgctcgtcggagtgctggccctgcagttccttctggcagggttccac 201
|||||| |||||||||| | || |||||||| ||||||| | || || ||||||||
Sbjct: 48717 gagaagttgaagctgctgctgggggtgctggcgctgcagtgctgcctcgcggggttccat 48658
Query: 202 atcgtctccagggcggcgctcaacatgggcatcagcgagatcgtgttca 250
|| || |||||||| || |||||||||||||||||| ||||||| ||||
Sbjct: 48657 attgtgtccagggcagccctcaacatgggcatcagcaagatcgtcttca 48609
>ref|XM_465336.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 1071
Score = 65.9 bits (33), Expect = 2e-008
Identities = 162/205 (79%)
Strand = Plus / Plus
Query: 142 gagaagctgaagctgctcgtcggagtgctggccctgcagttccttctggcagggttccac 201
|||||| |||||||||| | || |||||||| ||||||| | || || ||||||||
Sbjct: 16 gagaagttgaagctgctgctgggggtgctggcgctgcagtgctgcctcgcggggttccat 75
Query: 202 atcgtctccagggcggcgctcaacatgggcatcagcgagatcgtgttcatggtgtacagg 261
|| || |||||||| || |||||||||||||||||| ||||||| |||| || ||| |
Sbjct: 76 attgtgtccagggcagccctcaacatgggcatcagcaagatcgtcttcaccgtctaccgc 135
Query: 262 aacctcatctccctcgccttgctcgctccgttcgcctacttcctcgagaagaaagacagg 321
||| |||| || | || |||||| || || || |||||||| || |||||| | ||
Sbjct: 136 aactgcatcgccttggcattgctcataccttttgcatacttccttgaaaagaaaaataga 195
Query: 322 ccgccactcaccttctctttgctgg 346
|| || |||||||||||||||||||
Sbjct: 196 ccacccctcaccttctctttgctgg 220
>ref|NT_107178.1| Oryza sativa (japonica cultivar-group)
Length = 7645238
Score = 65.9 bits (33), Expect = 2e-008
Identities = 90/109 (82%)
Strand = Plus / Minus
Query: 142 gagaagctgaagctgctcgtcggagtgctggccctgcagttccttctggcagggttccac 201
|||||| |||||||||| | || |||||||| ||||||| | || || ||||||||
Sbjct: 7539469 gagaagttgaagctgctgctgggggtgctggcgctgcagtgctgcctcgcggggttccat 7539410
Query: 202 atcgtctccagggcggcgctcaacatgggcatcagcgagatcgtgttca 250
|| || |||||||| || |||||||||||||||||| ||||||| ||||
Sbjct: 7539409 attgtgtccagggcagccctcaacatgggcatcagcaagatcgtcttca 7539361
>gb|CH401169.1| Oryza sativa (japonica cultivar-group) chromosome 2 scaffold000006 genomic
scaffold, whole genome shotgun sequence
Length = 13452964
Score = 65.9 bits (33), Expect = 2e-008
Identities = 90/109 (82%)
Strand = Plus / Minus
Query: 142 gagaagctgaagctgctcgtcggagtgctggccctgcagttccttctggcagggttccac 201
|||||| |||||||||| | || |||||||| ||||||| | || || ||||||||
Sbjct: 13447232 gagaagttgaagctgctgctgggggtgctggcgctgcagtgctgcctcgcggggttccat 13447173
Query: 202 atcgtctccagggcggcgctcaacatgggcatcagcgagatcgtgttca 250
|| || |||||||| || |||||||||||||||||| ||||||| ||||
Sbjct: 13447172 attgtgtccagggcagccctcaacatgggcatcagcaagatcgtcttca 13447124
Score = 54.0 bits (27), Expect = 9e-005
Identities = 54/63 (85%)
Strand = Plus / Minus
Query: 345 ggtggagttcttcctgctagcgctgtgtgggataactgcgaaccagggcttctacctcct 404
|||| |||||||| | || |||||||| ||||| || || ||||||||||||||||| ||
Sbjct: 777354 ggtgcagttcttcttcctggcgctgtgcgggatcaccgccaaccagggcttctacctgct 777295
Query: 405 ggg 407
|||
Sbjct: 777294 ggg 777292
Score = 46.1 bits (23), Expect = 0.023
Identities = 44/51 (86%)
Strand = Plus / Minus
Query: 262 aacctcatctccctcgccttgctcgctccgttcgcctacttcctcgagaag 312
||||||||| ||||| | | ||||| || |||||||||||||||||||||
Sbjct: 777528 aacctcatcgccctcttcctcctcgcccccttcgcctacttcctcgagaag 777478
>gb|CM000139.1| Oryza sativa (japonica cultivar-group) chromosome 2, whole genome shotgun
sequence
Length = 36016269
Score = 65.9 bits (33), Expect = 2e-008
Identities = 90/109 (82%)
Strand = Plus / Minus
Query: 142 gagaagctgaagctgctcgtcggagtgctggccctgcagttccttctggcagggttccac 201
|||||| |||||||||| | || |||||||| ||||||| | || || ||||||||
Sbjct: 13447232 gagaagttgaagctgctgctgggggtgctggcgctgcagtgctgcctcgcggggttccat 13447173
Query: 202 atcgtctccagggcggcgctcaacatgggcatcagcgagatcgtgttca 250
|| || |||||||| || |||||||||||||||||| ||||||| ||||
Sbjct: 13447172 attgtgtccagggcagccctcaacatgggcatcagcaagatcgtcttca 13447124
Score = 54.0 bits (27), Expect = 9e-005
Identities = 54/63 (85%)
Strand = Plus / Minus
Query: 345 ggtggagttcttcctgctagcgctgtgtgggataactgcgaaccagggcttctacctcct 404
|||| |||||||| | || |||||||| ||||| || || ||||||||||||||||| ||
Sbjct: 777354 ggtgcagttcttcttcctggcgctgtgcgggatcaccgccaaccagggcttctacctgct 777295
Query: 405 ggg 407
|||
Sbjct: 777294 ggg 777292
Score = 48.1 bits (24), Expect = 0.006
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 71 acgtacgtgagctagctagctagc 94
||||||||||||||||||||||||
Sbjct: 22292685 acgtacgtgagctagctagctagc 22292662
Score = 46.1 bits (23), Expect = 0.023
Identities = 44/51 (86%)
Strand = Plus / Minus
Query: 262 aacctcatctccctcgccttgctcgctccgttcgcctacttcctcgagaag 312
||||||||| ||||| | | ||||| || |||||||||||||||||||||
Sbjct: 777528 aacctcatcgccctcttcctcctcgcccccttcgcctacttcctcgagaag 777478
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,006,364
Number of Sequences: 438736
Number of extensions: 1006364
Number of successful extensions: 15151
Number of sequences better than 0.5: 62
Number of HSP's better than 0.5 without gapping: 68
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 14380
Number of HSP's gapped (non-prelim): 765
length of query: 625
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 604
effective length of database: 2,791,206,460
effective search space: 1685888701840
effective search space used: 1685888701840
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)