BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QBTB.065K11F020919.3.1
(383 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CB644311.1|CB644311 OSJNEb05H09.r OSJNEb Oryza sativa (j... 119 1e-024
gb|CB646508.1|CB646508 OSJNEb09A17.r OSJNEb Oryza sativa (j... 119 1e-024
gb|CB648535.1|CB648535 OSJNEb11P09.r OSJNEb Oryza sativa (j... 119 1e-024
gb|CB652645.1|CB652645 OSJNEc02N19.r OSJNEc Oryza sativa (j... 119 1e-024
gb|CB652647.1|CB652647 OSJNEc02N20.r OSJNEc Oryza sativa (j... 119 1e-024
gb|CB653704.1|CB653704 OSJNEc04P21.r OSJNEc Oryza sativa (j... 119 1e-024
gb|CB654662.1|CB654662 OSJNEc07F22.r OSJNEc Oryza sativa (j... 119 1e-024
gb|CB655647.1|CB655647 OSJNEc09E07.r OSJNEc Oryza sativa (j... 119 1e-024
gb|CB655946.1|CB655946 OSJNEc09M07.r OSJNEc Oryza sativa (j... 119 1e-024
gb|CB656189.1|CB656189 OSJNEc10D24.r OSJNEc Oryza sativa (j... 119 1e-024
gb|CB656853.1|CB656853 OSJNEc11K09.r OSJNEc Oryza sativa (j... 119 1e-024
gb|CB658949.1|CB658949 OSJNEc15G24.r OSJNEc Oryza sativa (j... 119 1e-024
gb|CB659249.1|CB659249 OSJNEc16B06.r OSJNEc Oryza sativa (j... 119 1e-024
gb|CB659585.1|CB659585 OSJNEc16L02.f OSJNEc Oryza sativa (j... 119 1e-024
gb|CB674573.1|CB674573 OSJNEe09K22.r OSJNEe Oryza sativa (j... 119 1e-024
gb|CB677918.1|CB677918 OSJNEe15F21.r OSJNEe Oryza sativa (j... 119 1e-024
gb|CB684668.1|CB684668 OSJNEf14G16.r OSJNEf Oryza sativa (j... 119 1e-024
dbj|AB000801.2| Oryza sativa mRNA for chalcone synthase, co... 119 1e-024
dbj|AB058397.1| Oryza sativa (japonica cultivar-group) CHS ... 119 1e-024
gb|AC136925.1| Oryza sativa (japonica cultivar-group) chrom... 119 1e-024
dbj|AK067810.1| Oryza sativa (japonica cultivar-group) cDNA... 119 1e-024
gb|AC134256.4| Oryza sativa (japonica cultivar-group), comp... 119 1e-024
ref|NT_107091.1| Oryza sativa (japonica cultivar-group), co... 119 1e-024
gb|AACV01023282.1| Oryza sativa (japonica cultivar-group) c... 119 1e-024
gb|CH401264.1| Oryza sativa (japonica cultivar-group) chrom... 119 1e-024
gb|CM000148.1| Oryza sativa (japonica cultivar-group) chrom... 119 1e-024
dbj|AP008217.1| Oryza sativa (japonica cultivar-group) geno... 119 1e-024
gb|DP000010.1| Oryza sativa (japonica cultivar-group) chrom... 119 1e-024
gb|C23616.1|C23616 C23616 Rice green shoot Oryza sativa (ja... 111 3e-022
gb|CB652672.1|CB652672 OSJNEc02O19.r OSJNEc Oryza sativa (j... 111 3e-022
gb|CF326068.1|CF326068 JMT1--05-A08.g1 AtJMT-overexpressing... 111 3e-022
gb|CB645690.1|CB645690 OSJNEb07J04.r OSJNEb Oryza sativa (j... 103 7e-020
gb|CB650192.1|CB650192 OSJNEb14I06.r OSJNEb Oryza sativa (j... 101 3e-019
dbj|AP004002.3| Oryza sativa (japonica cultivar-group) geno... 101 3e-019
gb|AACV01015437.1| Oryza sativa (japonica cultivar-group) c... 101 3e-019
ref|NM_186515.1| Oryza sativa (japonica cultivar-group), mRNA 101 3e-019
ref|NT_079879.2| Oryza sativa (japonica cultivar-group) 101 3e-019
gb|CH401221.1| Oryza sativa (japonica cultivar-group) chrom... 101 3e-019
gb|CM000144.1| Oryza sativa (japonica cultivar-group) chrom... 101 3e-019
dbj|AP008213.1| Oryza sativa (japonica cultivar-group) geno... 101 3e-019
gb|CB643205.1|CB643205 OSJNEb03M07.r OSJNEb Oryza sativa (j... 96 2e-017
gb|CB680850.1|CB680850 OSJNEf06E21.r OSJNEf Oryza sativa (j... 96 2e-017
gb|CB658978.1|CB658978 OSJNEc15H22.r OSJNEc Oryza sativa (j... 92 3e-016
gb|CB659024.1|CB659024 OSJNEc15J15.r OSJNEc Oryza sativa (j... 80 1e-012
dbj|AP003278.5| Oryza sativa (japonica cultivar-group) geno... 52 2e-004
gb|AACV01001773.1| Oryza sativa (japonica cultivar-group) c... 52 2e-004
dbj|BA000010.8| Oryza sativa (japonica cultivar-group) geno... 52 2e-004
ref|NM_192650.1| Oryza sativa (japonica cultivar-group), p... 52 2e-004
ref|NT_079926.2| Oryza sativa (japonica cultivar-group) 52 2e-004
dbj|AP003330.4| Oryza sativa (japonica cultivar-group) geno... 52 2e-004
gb|CH401166.1| Oryza sativa (japonica cultivar-group) chrom... 52 2e-004
gb|CM000138.1| Oryza sativa (japonica cultivar-group) chrom... 52 2e-004
dbj|AP008207.1| Oryza sativa (japonica cultivar-group) geno... 52 2e-004
>gb|CB644311.1|CB644311 OSJNEb05H09.r OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb05H09 3', mRNA sequence
Length = 829
Score = 119 bits (60), Expect = 1e-024
Identities = 75/80 (93%)
Strand = Plus / Minus
Query: 1 gactggggcgtcctcttcggtttcggcccgggcctcaccgtcgagaccgtcgtgctccac 60
|||||||||||||||||||| |||||||| ||||||||||| ||||||||||| ||||||
Sbjct: 537 gactggggcgtcctcttcggcttcggccccggcctcaccgttgagaccgtcgtcctccac 478
Query: 61 agcgtccccatcaccaccgg 80
||||||||||||||| ||||
Sbjct: 477 agcgtccccatcaccgccgg 458
>gb|CB646508.1|CB646508 OSJNEb09A17.r OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb09A17 3', mRNA sequence
Length = 716
Score = 119 bits (60), Expect = 1e-024
Identities = 75/80 (93%)
Strand = Plus / Minus
Query: 1 gactggggcgtcctcttcggtttcggcccgggcctcaccgtcgagaccgtcgtgctccac 60
|||||||||||||||||||| |||||||| ||||||||||| ||||||||||| ||||||
Sbjct: 489 gactggggcgtcctcttcggcttcggccccggcctcaccgttgagaccgtcgtcctccac 430
Query: 61 agcgtccccatcaccaccgg 80
||||||||||||||| ||||
Sbjct: 429 agcgtccccatcaccgccgg 410
>gb|CB648535.1|CB648535 OSJNEb11P09.r OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb11P09 3', mRNA sequence
Length = 718
Score = 119 bits (60), Expect = 1e-024
Identities = 75/80 (93%)
Strand = Plus / Minus
Query: 1 gactggggcgtcctcttcggtttcggcccgggcctcaccgtcgagaccgtcgtgctccac 60
|||||||||||||||||||| |||||||| ||||||||||| ||||||||||| ||||||
Sbjct: 524 gactggggcgtcctcttcggcttcggccccggcctcaccgttgagaccgtcgtcctccac 465
Query: 61 agcgtccccatcaccaccgg 80
||||||||||||||| ||||
Sbjct: 464 agcgtccccatcaccgccgg 445
>gb|CB652645.1|CB652645 OSJNEc02N19.r OSJNEc Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEc02N19 3', mRNA sequence
Length = 645
Score = 119 bits (60), Expect = 1e-024
Identities = 75/80 (93%)
Strand = Plus / Minus
Query: 1 gactggggcgtcctcttcggtttcggcccgggcctcaccgtcgagaccgtcgtgctccac 60
|||||||||||||||||||| |||||||| ||||||||||| ||||||||||| ||||||
Sbjct: 387 gactggggcgtcctcttcggcttcggccccggcctcaccgttgagaccgtcgtcctccac 328
Query: 61 agcgtccccatcaccaccgg 80
||||||||||||||| ||||
Sbjct: 327 agcgtccccatcaccgccgg 308
>gb|CB652647.1|CB652647 OSJNEc02N20.r OSJNEc Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEc02N20 3', mRNA sequence
Length = 735
Score = 119 bits (60), Expect = 1e-024
Identities = 75/80 (93%)
Strand = Plus / Minus
Query: 1 gactggggcgtcctcttcggtttcggcccgggcctcaccgtcgagaccgtcgtgctccac 60
|||||||||||||||||||| |||||||| ||||||||||| ||||||||||| ||||||
Sbjct: 477 gactggggcgtcctcttcggcttcggccccggcctcaccgttgagaccgtcgtcctccac 418
Query: 61 agcgtccccatcaccaccgg 80
||||||||||||||| ||||
Sbjct: 417 agcgtccccatcaccgccgg 398
>gb|CB653704.1|CB653704 OSJNEc04P21.r OSJNEc Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEc04P21 3', mRNA sequence
Length = 778
Score = 119 bits (60), Expect = 1e-024
Identities = 75/80 (93%)
Strand = Plus / Minus
Query: 1 gactggggcgtcctcttcggtttcggcccgggcctcaccgtcgagaccgtcgtgctccac 60
|||||||||||||||||||| |||||||| ||||||||||| ||||||||||| ||||||
Sbjct: 516 gactggggcgtcctcttcggcttcggccccggcctcaccgttgagaccgtcgtcctccac 457
Query: 61 agcgtccccatcaccaccgg 80
||||||||||||||| ||||
Sbjct: 456 agcgtccccatcaccgccgg 437
>gb|CB654662.1|CB654662 OSJNEc07F22.r OSJNEc Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEc07F22 3', mRNA sequence
Length = 751
Score = 119 bits (60), Expect = 1e-024
Identities = 75/80 (93%)
Strand = Plus / Minus
Query: 1 gactggggcgtcctcttcggtttcggcccgggcctcaccgtcgagaccgtcgtgctccac 60
|||||||||||||||||||| |||||||| ||||||||||| ||||||||||| ||||||
Sbjct: 490 gactggggcgtcctcttcggcttcggccccggcctcaccgttgagaccgtcgtcctccac 431
Query: 61 agcgtccccatcaccaccgg 80
||||||||||||||| ||||
Sbjct: 430 agcgtccccatcaccgccgg 411
>gb|CB655647.1|CB655647 OSJNEc09E07.r OSJNEc Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEc09E07 3', mRNA sequence
Length = 746
Score = 119 bits (60), Expect = 1e-024
Identities = 75/80 (93%)
Strand = Plus / Minus
Query: 1 gactggggcgtcctcttcggtttcggcccgggcctcaccgtcgagaccgtcgtgctccac 60
|||||||||||||||||||| |||||||| ||||||||||| ||||||||||| ||||||
Sbjct: 482 gactggggcgtcctcttcggcttcggccccggcctcaccgttgagaccgtcgtcctccac 423
Query: 61 agcgtccccatcaccaccgg 80
||||||||||||||| ||||
Sbjct: 422 agcgtccccatcaccgccgg 403
>gb|CB655946.1|CB655946 OSJNEc09M07.r OSJNEc Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEc09M07 3', mRNA sequence
Length = 749
Score = 119 bits (60), Expect = 1e-024
Identities = 75/80 (93%)
Strand = Plus / Minus
Query: 1 gactggggcgtcctcttcggtttcggcccgggcctcaccgtcgagaccgtcgtgctccac 60
|||||||||||||||||||| |||||||| ||||||||||| ||||||||||| ||||||
Sbjct: 482 gactggggcgtcctcttcggcttcggccccggcctcaccgttgagaccgtcgtcctccac 423
Query: 61 agcgtccccatcaccaccgg 80
||||||||||||||| ||||
Sbjct: 422 agcgtccccatcaccgccgg 403
>gb|CB656189.1|CB656189 OSJNEc10D24.r OSJNEc Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEc10D24 3', mRNA sequence
Length = 821
Score = 119 bits (60), Expect = 1e-024
Identities = 75/80 (93%)
Strand = Plus / Minus
Query: 1 gactggggcgtcctcttcggtttcggcccgggcctcaccgtcgagaccgtcgtgctccac 60
|||||||||||||||||||| |||||||| ||||||||||| ||||||||||| ||||||
Sbjct: 531 gactggggcgtcctcttcggcttcggccccggcctcaccgttgagaccgtcgtcctccac 472
Query: 61 agcgtccccatcaccaccgg 80
||||||||||||||| ||||
Sbjct: 471 agcgtccccatcaccgccgg 452
>gb|CB656853.1|CB656853 OSJNEc11K09.r OSJNEc Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEc11K09 3', mRNA sequence
Length = 794
Score = 119 bits (60), Expect = 1e-024
Identities = 75/80 (93%)
Strand = Plus / Minus
Query: 1 gactggggcgtcctcttcggtttcggcccgggcctcaccgtcgagaccgtcgtgctccac 60
|||||||||||||||||||| |||||||| ||||||||||| ||||||||||| ||||||
Sbjct: 537 gactggggcgtcctcttcggcttcggccccggcctcaccgttgagaccgtcgtcctccac 478
Query: 61 agcgtccccatcaccaccgg 80
||||||||||||||| ||||
Sbjct: 477 agcgtccccatcaccgccgg 458
>gb|CB658949.1|CB658949 OSJNEc15G24.r OSJNEc Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEc15G24 3', mRNA sequence
Length = 772
Score = 119 bits (60), Expect = 1e-024
Identities = 75/80 (93%)
Strand = Plus / Minus
Query: 1 gactggggcgtcctcttcggtttcggcccgggcctcaccgtcgagaccgtcgtgctccac 60
|||||||||||||||||||| |||||||| ||||||||||| ||||||||||| ||||||
Sbjct: 482 gactggggcgtcctcttcggcttcggccccggcctcaccgttgagaccgtcgtcctccac 423
Query: 61 agcgtccccatcaccaccgg 80
||||||||||||||| ||||
Sbjct: 422 agcgtccccatcaccgccgg 403
>gb|CB659249.1|CB659249 OSJNEc16B06.r OSJNEc Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEc16B06 3', mRNA sequence
Length = 729
Score = 119 bits (60), Expect = 1e-024
Identities = 75/80 (93%)
Strand = Plus / Minus
Query: 1 gactggggcgtcctcttcggtttcggcccgggcctcaccgtcgagaccgtcgtgctccac 60
|||||||||||||||||||| |||||||| ||||||||||| ||||||||||| ||||||
Sbjct: 464 gactggggcgtcctcttcggcttcggccccggcctcaccgttgagaccgtcgtcctccac 405
Query: 61 agcgtccccatcaccaccgg 80
||||||||||||||| ||||
Sbjct: 404 agcgtccccatcaccgccgg 385
>gb|CB659585.1|CB659585 OSJNEc16L02.f OSJNEc Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEc16L02 5', mRNA sequence
Length = 677
Score = 119 bits (60), Expect = 1e-024
Identities = 75/80 (93%)
Strand = Plus / Minus
Query: 1 gactggggcgtcctcttcggtttcggcccgggcctcaccgtcgagaccgtcgtgctccac 60
|||||||||||||||||||| |||||||| ||||||||||| ||||||||||| ||||||
Sbjct: 481 gactggggcgtcctcttcggcttcggccccggcctcaccgttgagaccgtcgtcctccac 422
Query: 61 agcgtccccatcaccaccgg 80
||||||||||||||| ||||
Sbjct: 421 agcgtccccatcaccgccgg 402
>gb|CB674573.1|CB674573 OSJNEe09K22.r OSJNEe Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEe09K22 3', mRNA sequence
Length = 739
Score = 119 bits (60), Expect = 1e-024
Identities = 75/80 (93%)
Strand = Plus / Minus
Query: 1 gactggggcgtcctcttcggtttcggcccgggcctcaccgtcgagaccgtcgtgctccac 60
|||||||||||||||||||| |||||||| ||||||||||| ||||||||||| ||||||
Sbjct: 482 gactggggcgtcctcttcggcttcggccccggcctcaccgttgagaccgtcgtcctccac 423
Query: 61 agcgtccccatcaccaccgg 80
||||||||||||||| ||||
Sbjct: 422 agcgtccccatcaccgccgg 403
>gb|CB677918.1|CB677918 OSJNEe15F21.r OSJNEe Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEe15F21 3', mRNA sequence
Length = 731
Score = 119 bits (60), Expect = 1e-024
Identities = 75/80 (93%)
Strand = Plus / Minus
Query: 1 gactggggcgtcctcttcggtttcggcccgggcctcaccgtcgagaccgtcgtgctccac 60
|||||||||||||||||||| |||||||| ||||||||||| ||||||||||| ||||||
Sbjct: 489 gactggggcgtcctcttcggcttcggccccggcctcaccgttgagaccgtcgtcctccac 430
Query: 61 agcgtccccatcaccaccgg 80
||||||||||||||| ||||
Sbjct: 429 agcgtccccatcaccgccgg 410
>gb|CB684668.1|CB684668 OSJNEf14G16.r OSJNEf Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEf14G16 3', mRNA sequence
Length = 795
Score = 119 bits (60), Expect = 1e-024
Identities = 75/80 (93%)
Strand = Plus / Minus
Query: 1 gactggggcgtcctcttcggtttcggcccgggcctcaccgtcgagaccgtcgtgctccac 60
|||||||||||||||||||| |||||||| ||||||||||| ||||||||||| ||||||
Sbjct: 491 gactggggcgtcctcttcggcttcggccccggcctcaccgttgagaccgtcgtcctccac 432
Query: 61 agcgtccccatcaccaccgg 80
||||||||||||||| ||||
Sbjct: 431 agcgtccccatcaccgccgg 412
>dbj|AB000801.2| Oryza sativa mRNA for chalcone synthase, complete cds
Length = 1782
Score = 119 bits (60), Expect = 1e-024
Identities = 75/80 (93%)
Strand = Plus / Plus
Query: 1 gactggggcgtcctcttcggtttcggcccgggcctcaccgtcgagaccgtcgtgctccac 60
|||||||||||||||||||| |||||||| ||||||||||| ||||||||||| ||||||
Sbjct: 1283 gactggggcgtcctcttcggcttcggccccggcctcaccgttgagaccgtcgtcctccac 1342
Query: 61 agcgtccccatcaccaccgg 80
||||||||||||||| ||||
Sbjct: 1343 agcgtccccatcaccgccgg 1362
>dbj|AB058397.1| Oryza sativa (japonica cultivar-group) CHS gene for chalcone
synthase, complete cds
Length = 8072
Score = 119 bits (60), Expect = 1e-024
Identities = 75/80 (93%)
Strand = Plus / Plus
Query: 1 gactggggcgtcctcttcggtttcggcccgggcctcaccgtcgagaccgtcgtgctccac 60
|||||||||||||||||||| |||||||| ||||||||||| ||||||||||| ||||||
Sbjct: 4668 gactggggcgtcctcttcggcttcggccccggcctcaccgttgagaccgtcgtcctccac 4727
Query: 61 agcgtccccatcaccaccgg 80
||||||||||||||| ||||
Sbjct: 4728 agcgtccccatcaccgccgg 4747
>gb|AC136925.1| Oryza sativa (japonica cultivar-group) chromosome 11 clone
OSJNBa0090B19, *** SEQUENCING IN PROGRESS ***, 7 ordered
pieces
Length = 113164
Score = 119 bits (60), Expect = 1e-024
Identities = 75/80 (93%)
Strand = Plus / Plus
Query: 1 gactggggcgtcctcttcggtttcggcccgggcctcaccgtcgagaccgtcgtgctccac 60
|||||||||||||||||||| |||||||| ||||||||||| ||||||||||| ||||||
Sbjct: 86665 gactggggcgtcctcttcggcttcggccccggcctcaccgttgagaccgtcgtcctccac 86724
Query: 61 agcgtccccatcaccaccgg 80
||||||||||||||| ||||
Sbjct: 86725 agcgtccccatcaccgccgg 86744
>dbj|AK067810.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013119K06, full
insert sequence
Length = 1755
Score = 119 bits (60), Expect = 1e-024
Identities = 75/80 (93%)
Strand = Plus / Plus
Query: 1 gactggggcgtcctcttcggtttcggcccgggcctcaccgtcgagaccgtcgtgctccac 60
|||||||||||||||||||| |||||||| ||||||||||| ||||||||||| ||||||
Sbjct: 1274 gactggggcgtcctcttcggcttcggccccggcctcaccgttgagaccgtcgtcctccac 1333
Query: 61 agcgtccccatcaccaccgg 80
||||||||||||||| ||||
Sbjct: 1334 agcgtccccatcaccgccgg 1353
>gb|AC134256.4| Oryza sativa (japonica cultivar-group), complete sequence
Length = 178233
Score = 119 bits (60), Expect = 1e-024
Identities = 75/80 (93%)
Strand = Plus / Minus
Query: 1 gactggggcgtcctcttcggtttcggcccgggcctcaccgtcgagaccgtcgtgctccac 60
|||||||||||||||||||| |||||||| ||||||||||| ||||||||||| ||||||
Sbjct: 26535 gactggggcgtcctcttcggcttcggccccggcctcaccgttgagaccgtcgtcctccac 26476
Query: 61 agcgtccccatcaccaccgg 80
||||||||||||||| ||||
Sbjct: 26475 agcgtccccatcaccgccgg 26456
>ref|NT_107091.1| Oryza sativa (japonica cultivar-group), complete sequence
Length = 178233
Score = 119 bits (60), Expect = 1e-024
Identities = 75/80 (93%)
Strand = Plus / Minus
Query: 1 gactggggcgtcctcttcggtttcggcccgggcctcaccgtcgagaccgtcgtgctccac 60
|||||||||||||||||||| |||||||| ||||||||||| ||||||||||| ||||||
Sbjct: 26535 gactggggcgtcctcttcggcttcggccccggcctcaccgttgagaccgtcgtcctccac 26476
Query: 61 agcgtccccatcaccaccgg 80
||||||||||||||| ||||
Sbjct: 26475 agcgtccccatcaccgccgg 26456
>gb|AACV01023282.1| Oryza sativa (japonica cultivar-group) chromosome 11 Ctg023282, whole
genome shotgun sequence
Length = 7438
Score = 119 bits (60), Expect = 1e-024
Identities = 75/80 (93%)
Strand = Plus / Minus
Query: 1 gactggggcgtcctcttcggtttcggcccgggcctcaccgtcgagaccgtcgtgctccac 60
|||||||||||||||||||| |||||||| ||||||||||| ||||||||||| ||||||
Sbjct: 1583 gactggggcgtcctcttcggcttcggccccggcctcaccgttgagaccgtcgtcctccac 1524
Query: 61 agcgtccccatcaccaccgg 80
||||||||||||||| ||||
Sbjct: 1523 agcgtccccatcaccgccgg 1504
>gb|CH401264.1| Oryza sativa (japonica cultivar-group) chromosome 11 scaffold000101 genomic
scaffold, whole genome shotgun sequence
Length = 5106408
Score = 119 bits (60), Expect = 1e-024
Identities = 75/80 (93%)
Strand = Plus / Minus
Query: 1 gactggggcgtcctcttcggtttcggcccgggcctcaccgtcgagaccgtcgtgctccac 60
|||||||||||||||||||| |||||||| ||||||||||| ||||||||||| ||||||
Sbjct: 1315644 gactggggcgtcctcttcggcttcggccccggcctcaccgttgagaccgtcgtcctccac 1315585
Query: 61 agcgtccccatcaccaccgg 80
||||||||||||||| ||||
Sbjct: 1315584 agcgtccccatcaccgccgg 1315565
>gb|CM000148.1| Oryza sativa (japonica cultivar-group) chromosome 11, whole genome shotgun
sequence
Length = 22593549
Score = 119 bits (60), Expect = 1e-024
Identities = 75/80 (93%)
Strand = Plus / Minus
Query: 1 gactggggcgtcctcttcggtttcggcccgggcctcaccgtcgagaccgtcgtgctccac 60
|||||||||||||||||||| |||||||| ||||||||||| ||||||||||| ||||||
Sbjct: 15480626 gactggggcgtcctcttcggcttcggccccggcctcaccgttgagaccgtcgtcctccac 15480567
Query: 61 agcgtccccatcaccaccgg 80
||||||||||||||| ||||
Sbjct: 15480566 agcgtccccatcaccgccgg 15480547
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
sequence
Length = 28386948
Score = 119 bits (60), Expect = 1e-024
Identities = 75/80 (93%)
Strand = Plus / Minus
Query: 1 gactggggcgtcctcttcggtttcggcccgggcctcaccgtcgagaccgtcgtgctccac 60
|||||||||||||||||||| |||||||| ||||||||||| ||||||||||| ||||||
Sbjct: 18612155 gactggggcgtcctcttcggcttcggccccggcctcaccgttgagaccgtcgtcctccac 18612096
Query: 61 agcgtccccatcaccaccgg 80
||||||||||||||| ||||
Sbjct: 18612095 agcgtccccatcaccgccgg 18612076
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
Length = 28369397
Score = 119 bits (60), Expect = 1e-024
Identities = 75/80 (93%)
Strand = Plus / Minus
Query: 1 gactggggcgtcctcttcggtttcggcccgggcctcaccgtcgagaccgtcgtgctccac 60
|||||||||||||||||||| |||||||| ||||||||||| ||||||||||| ||||||
Sbjct: 18771556 gactggggcgtcctcttcggcttcggccccggcctcaccgttgagaccgtcgtcctccac 18771497
Query: 61 agcgtccccatcaccaccgg 80
||||||||||||||| ||||
Sbjct: 18771496 agcgtccccatcaccgccgg 18771477
>gb|C23616.1|C23616 C23616 Rice green shoot Oryza sativa (japonica cultivar-group) cDNA
clone S16073_1Z, mRNA sequence
Length = 453
Score = 111 bits (56), Expect = 3e-022
Identities = 70/75 (93%)
Strand = Plus / Plus
Query: 1 gactggggcgtcctcttcggtttcggcccgggcctcaccgtcgagaccgtcgtgctccac 60
||||||| |||||||||||| |||||||| ||||||||||| ||||||||||| ||||||
Sbjct: 161 gactgggncgtcctcttcggcttcggccccggcctcaccgttgagaccgtcgtcctccac 220
Query: 61 agcgtccccatcacc 75
|||||||||||||||
Sbjct: 221 agcgtccccatcacc 235
>gb|CB652672.1|CB652672 OSJNEc02O19.r OSJNEc Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEc02O19 3', mRNA sequence
Length = 690
Score = 111 bits (56), Expect = 3e-022
Identities = 74/80 (92%)
Strand = Plus / Minus
Query: 1 gactggggcgtcctcttcggtttcggcccgggcctcaccgtcgagaccgtcgtgctccac 60
|||||||||||||||||||| |||||||| ||||||||||| ||||||||||| ||||||
Sbjct: 398 gactggggcgtcctcttcggcttcggccccggcctcaccgttgagaccgtcgtcctccac 339
Query: 61 agcgtccccatcaccaccgg 80
|| |||||||||||| ||||
Sbjct: 338 agggtccccatcaccgccgg 319
>gb|CF326068.1|CF326068 JMT1--05-A08.g1 AtJMT-overexpressing transgenic rice lambda phage
cDNA library (JMT1) Oryza sativa (japonica
cultivar-group) cDNA clone JMT1--05-A08, mRNA sequence
Length = 585
Score = 111 bits (56), Expect = 3e-022
Identities = 74/80 (92%)
Strand = Plus / Minus
Query: 1 gactggggcgtcctcttcggtttcggcccgggcctcaccgtcgagaccgtcgtgctccac 60
|||||||||||||||||||| |||||||| |||||||| |||||||| ||||| ||||||
Sbjct: 497 gactggggcgtcctcttcggcttcggccccggcctcactgtcgagacggtcgtcctccac 438
Query: 61 agcgtccccatcaccaccgg 80
||||||||||||||| ||||
Sbjct: 437 agcgtccccatcaccgccgg 418
>gb|CB645690.1|CB645690 OSJNEb07J04.r OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb07J04 3', mRNA sequence
Length = 737
Score = 103 bits (52), Expect = 7e-020
Identities = 73/80 (91%)
Strand = Plus / Minus
Query: 1 gactggggcgtcctcttcggtttcggcccgggcctcaccgtcgagaccgtcgtgctccac 60
|||||||||||||||||||| |||||||| |||||| |||| |||||||| || ||||||
Sbjct: 506 gactggggcgtcctcttcggcttcggccccggcctccccgttgagaccgttgtcctccac 447
Query: 61 agcgtccccatcaccaccgg 80
||||||||||||||| ||||
Sbjct: 446 agcgtccccatcaccgccgg 427
>gb|CB650192.1|CB650192 OSJNEb14I06.r OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb14I06 3', mRNA sequence
Length = 681
Score = 101 bits (51), Expect = 3e-019
Identities = 66/71 (92%)
Strand = Plus / Minus
Query: 4 tggggcgtcctcttcggtttcggcccgggcctcaccgtcgagaccgtcgtgctccacagc 63
||||||||||||||||| |||||||| ||||||||||| ||||| ||||| |||||||||
Sbjct: 467 tggggcgtcctcttcggcttcggccccggcctcaccgttgagacggtcgtcctccacagc 408
Query: 64 gtccccatcac 74
|||||||||||
Sbjct: 407 gtccccatcac 397
>dbj|AP004002.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
clone:OJ1116_C08
Length = 102317
Score = 101 bits (51), Expect = 3e-019
Identities = 69/75 (92%)
Strand = Plus / Minus
Query: 1 gactggggcgtcctcttcggtttcggcccgggcctcaccgtcgagaccgtcgtgctccac 60
|||||||||||||||||||| ||||| || ||||||||||||||||| |||| ||||||
Sbjct: 77428 gactggggcgtcctcttcggcttcggtcctggcctcaccgtcgagactatcgttctccac 77369
Query: 61 agcgtccccatcacc 75
|||||||||||||||
Sbjct: 77368 agcgtccccatcacc 77354
>gb|AACV01015437.1| Oryza sativa (japonica cultivar-group) chromosome 7 Ctg015437, whole
genome shotgun sequence
Length = 2098
Score = 101 bits (51), Expect = 3e-019
Identities = 69/75 (92%)
Strand = Plus / Minus
Query: 1 gactggggcgtcctcttcggtttcggcccgggcctcaccgtcgagaccgtcgtgctccac 60
|||||||||||||||||||| ||||| || ||||||||||||||||| |||| ||||||
Sbjct: 1143 gactggggcgtcctcttcggcttcggtcctggcctcaccgtcgagactatcgttctccac 1084
Query: 61 agcgtccccatcacc 75
|||||||||||||||
Sbjct: 1083 agcgtccccatcacc 1069
>ref|NM_186515.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 1212
Score = 101 bits (51), Expect = 3e-019
Identities = 69/75 (92%)
Strand = Plus / Plus
Query: 1 gactggggcgtcctcttcggtttcggcccgggcctcaccgtcgagaccgtcgtgctccac 60
|||||||||||||||||||| ||||| || ||||||||||||||||| |||| ||||||
Sbjct: 1111 gactggggcgtcctcttcggcttcggtcctggcctcaccgtcgagactatcgttctccac 1170
Query: 61 agcgtccccatcacc 75
|||||||||||||||
Sbjct: 1171 agcgtccccatcacc 1185
>ref|NT_079879.2| Oryza sativa (japonica cultivar-group)
Length = 11570172
Score = 101 bits (51), Expect = 3e-019
Identities = 69/75 (92%)
Strand = Plus / Minus
Query: 1 gactggggcgtcctcttcggtttcggcccgggcctcaccgtcgagaccgtcgtgctccac 60
|||||||||||||||||||| ||||| || ||||||||||||||||| |||| ||||||
Sbjct: 6282940 gactggggcgtcctcttcggcttcggtcctggcctcaccgtcgagactatcgttctccac 6282881
Query: 61 agcgtccccatcacc 75
|||||||||||||||
Sbjct: 6282880 agcgtccccatcacc 6282866
>gb|CH401221.1| Oryza sativa (japonica cultivar-group) chromosome 7 scaffold000058
genomic scaffold, whole genome shotgun sequence
Length = 3500188
Score = 101 bits (51), Expect = 3e-019
Identities = 69/75 (92%)
Strand = Plus / Minus
Query: 1 gactggggcgtcctcttcggtttcggcccgggcctcaccgtcgagaccgtcgtgctccac 60
|||||||||||||||||||| ||||| || ||||||||||||||||| |||| ||||||
Sbjct: 183914 gactggggcgtcctcttcggcttcggtcctggcctcaccgtcgagactatcgttctccac 183855
Query: 61 agcgtccccatcacc 75
|||||||||||||||
Sbjct: 183854 agcgtccccatcacc 183840
>gb|CM000144.1| Oryza sativa (japonica cultivar-group) chromosome 7, whole genome shotgun
sequence
Length = 28626509
Score = 101 bits (51), Expect = 3e-019
Identities = 69/75 (92%)
Strand = Plus / Minus
Query: 1 gactggggcgtcctcttcggtttcggcccgggcctcaccgtcgagaccgtcgtgctccac 60
|||||||||||||||||||| ||||| || ||||||||||||||||| |||| ||||||
Sbjct: 6237539 gactggggcgtcctcttcggcttcggtcctggcctcaccgtcgagactatcgttctccac 6237480
Query: 61 agcgtccccatcacc 75
|||||||||||||||
Sbjct: 6237479 agcgtccccatcacc 6237465
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
sequence
Length = 29644043
Score = 101 bits (51), Expect = 3e-019
Identities = 69/75 (92%)
Strand = Plus / Minus
Query: 1 gactggggcgtcctcttcggtttcggcccgggcctcaccgtcgagaccgtcgtgctccac 60
|||||||||||||||||||| ||||| || ||||||||||||||||| |||| ||||||
Sbjct: 6326868 gactggggcgtcctcttcggcttcggtcctggcctcaccgtcgagactatcgttctccac 6326809
Query: 61 agcgtccccatcacc 75
|||||||||||||||
Sbjct: 6326808 agcgtccccatcacc 6326794
>gb|CB643205.1|CB643205 OSJNEb03M07.r OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb03M07 3', mRNA sequence
Length = 583
Score = 95.6 bits (48), Expect = 2e-017
Identities = 72/80 (90%)
Strand = Plus / Minus
Query: 1 gactggggcgtcctcttcggtttcggcccgggcctcaccgtcgagaccgtcgtgctccac 60
|||||||||||||||||||| || ||||| ||||||||||| |||||||| || ||||||
Sbjct: 430 gactggggcgtcctcttcggatttggccccggcctcaccgttgagaccgtagtcctccac 371
Query: 61 agcgtccccatcaccaccgg 80
|| |||||||||||| ||||
Sbjct: 370 agagtccccatcaccgccgg 351
>gb|CB680850.1|CB680850 OSJNEf06E21.r OSJNEf Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEf06E21 3', mRNA sequence
Length = 646
Score = 95.6 bits (48), Expect = 2e-017
Identities = 72/80 (90%)
Strand = Plus / Minus
Query: 1 gactggggcgtcctcttcggtttcggcccgggcctcaccgtcgagaccgtcgtgctccac 60
|||||||| ||||| |||||||||||||| ||||||||||| |||||||| || ||||||
Sbjct: 482 gactggggggtccttttcggtttcggccccggcctcaccgttgagaccgttgtcctccac 423
Query: 61 agcgtccccatcaccaccgg 80
|| |||||||||||| ||||
Sbjct: 422 agggtccccatcaccgccgg 403
>gb|CB658978.1|CB658978 OSJNEc15H22.r OSJNEc Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEc15H22 3', mRNA sequence
Length = 483
Score = 91.7 bits (46), Expect = 3e-016
Identities = 64/70 (91%)
Strand = Plus / Minus
Query: 11 tcctcttcggtttcggcccgggcctcaccgtcgagaccgtcgtgctccacagcgtcccca 70
||||||| || |||||||| ||||||||||| ||||||||||| ||||||||||||||||
Sbjct: 483 tcctcttagggttcggccccggcctcaccgttgagaccgtcgtcctccacagcgtcccca 424
Query: 71 tcaccaccgg 80
||||| ||||
Sbjct: 423 tcaccgccgg 414
>gb|CB659024.1|CB659024 OSJNEc15J15.r OSJNEc Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEc15J15 3', mRNA sequence
Length = 556
Score = 79.8 bits (40), Expect = 1e-012
Identities = 70/80 (87%)
Strand = Plus / Minus
Query: 1 gactggggcgtcctcttcggtttcggcccgggcctcaccgtcgagaccgtcgtgctccac 60
|||||||||||| | || || || ||||| ||||||||||| ||||||||||| ||||||
Sbjct: 419 gactggggcgtcttttttggctttggccccggcctcaccgttgagaccgtcgtcctccac 360
Query: 61 agcgtccccatcaccaccgg 80
|| |||||||||||| ||||
Sbjct: 359 agggtccccatcaccgccgg 340
>dbj|AP003278.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
clone:P0518F01
Length = 154541
Score = 52.0 bits (26), Expect = 2e-004
Identities = 38/42 (90%)
Strand = Plus / Minus
Query: 17 tcggtttcggcccgggcctcaccgtcgagaccgtcgtgctcc 58
|||| |||||||| ||||||||||||||||| |||||||||
Sbjct: 147160 tcggcttcggcccaggcctcaccgtcgagacaatcgtgctcc 147119
>gb|AACV01001773.1| Oryza sativa (japonica cultivar-group) chromosome 1 Ctg001773, whole
genome shotgun sequence
Length = 63168
Score = 52.0 bits (26), Expect = 2e-004
Identities = 38/42 (90%)
Strand = Plus / Plus
Query: 17 tcggtttcggcccgggcctcaccgtcgagaccgtcgtgctcc 58
|||| |||||||| ||||||||||||||||| |||||||||
Sbjct: 12757 tcggcttcggcccaggcctcaccgtcgagacaatcgtgctcc 12798
>dbj|BA000010.8| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43342410
Score = 52.0 bits (26), Expect = 2e-004
Identities = 38/42 (90%)
Strand = Plus / Minus
Query: 17 tcggtttcggcccgggcctcaccgtcgagaccgtcgtgctcc 58
|||| |||||||| ||||||||||||||||| |||||||||
Sbjct: 23763178 tcggcttcggcccaggcctcaccgtcgagacaatcgtgctcc 23763137
>ref|NM_192650.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 1434
Score = 52.0 bits (26), Expect = 2e-004
Identities = 38/42 (90%)
Strand = Plus / Plus
Query: 17 tcggtttcggcccgggcctcaccgtcgagaccgtcgtgctcc 58
|||| |||||||| ||||||||||||||||| |||||||||
Sbjct: 1373 tcggcttcggcccaggcctcaccgtcgagacaatcgtgctcc 1414
>ref|NT_079926.2| Oryza sativa (japonica cultivar-group)
Length = 8469246
Score = 52.0 bits (26), Expect = 2e-004
Identities = 38/42 (90%)
Strand = Plus / Minus
Query: 17 tcggtttcggcccgggcctcaccgtcgagaccgtcgtgctcc 58
|||| |||||||| ||||||||||||||||| |||||||||
Sbjct: 6681410 tcggcttcggcccaggcctcaccgtcgagacaatcgtgctcc 6681369
>dbj|AP003330.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
clone:B1085F01
Length = 163671
Score = 52.0 bits (26), Expect = 2e-004
Identities = 38/42 (90%)
Strand = Plus / Minus
Query: 17 tcggtttcggcccgggcctcaccgtcgagaccgtcgtgctcc 58
|||| |||||||| ||||||||||||||||| |||||||||
Sbjct: 62165 tcggcttcggcccaggcctcaccgtcgagacaatcgtgctcc 62124
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 723,913
Number of Sequences: 438736
Number of extensions: 723913
Number of successful extensions: 18647
Number of sequences better than 0.5: 53
Number of HSP's better than 0.5 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 18131
Number of HSP's gapped (non-prelim): 516
length of query: 383
length of database: 2,800,419,916
effective HSP length: 20
effective length of query: 363
effective length of database: 2,791,645,196
effective search space: 1013367206148
effective search space used: 1013367206148
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)