BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QBTB.064D08F020918.3.1
(559 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|AK120913.1| Oryza sativa (japonica cultivar-group) cDNA... 60 1e-006
emb|AJ495789.1|OSA495789 Oryza sativa (japonica cultivar-gr... 52 3e-004
gb|AQ256495.1|AQ256495 nbxb0016K12f CUGI Rice BAC Library O... 38 4.9
gb|AQ272243.1|AQ272243 nbxb0027P11f CUGI Rice BAC Library O... 38 4.9
gb|AQ287814.1|AQ287814 nbxb0031K16f CUGI Rice BAC Library O... 38 4.9
gb|AQ690153.1|AQ690153 nbxb0081O08f CUGI Rice BAC Library O... 38 4.9
emb|AL713944.3|CNS07YPN Oryza sativa chromosome 12, . BAC O... 38 4.9
dbj|AP005408.2| Oryza sativa (japonica cultivar-group) geno... 38 4.9
gb|AC135595.5| Oryza sativa chromosome 3 BAC OSJNBa0028F23 ... 38 4.9
ref|NT_079837.2| Oryza sativa (japonica cultivar-group) 38 4.9
gb|AACV01000643.1| Oryza sativa (japonica cultivar-group) c... 38 4.9
gb|AACV01001451.1| Oryza sativa (japonica cultivar-group) c... 38 4.9
gb|AACV01004139.1| Oryza sativa (japonica cultivar-group) c... 38 4.9
gb|AACV01008141.1| Oryza sativa (japonica cultivar-group) c... 38 4.9
gb|AACV01009035.1| Oryza sativa (japonica cultivar-group) c... 38 4.9
gb|AACV01009263.1| Oryza sativa (japonica cultivar-group) c... 38 4.9
gb|AACV01019708.1| Oryza sativa (japonica cultivar-group) c... 38 4.9
gb|AACV01025055.1| Oryza sativa (japonica cultivar-group) c... 38 4.9
dbj|BA000010.8| Oryza sativa (japonica cultivar-group) geno... 38 4.9
ref|NT_079855.2| Oryza sativa (japonica cultivar-group) 38 4.9
ref|NT_079856.2| Oryza sativa (japonica cultivar-group) 38 4.9
ref|NT_079926.2| Oryza sativa (japonica cultivar-group) 38 4.9
ref|NT_107081.1| Oryza sativa (japonica cultivar-group) 38 4.9
ref|NT_107179.1| Oryza sativa (japonica cultivar-group) 38 4.9
ref|NT_107188.1| Oryza sativa (japonica cultivar-group) 38 4.9
dbj|AP005881.3| Oryza sativa (japonica cultivar-group) geno... 38 4.9
ref|NT_036312.3| Oryza sativa (japonica cultivar-group) 38 4.9
dbj|AP000969.1| Oryza sativa (japonica cultivar-group) geno... 38 4.9
dbj|AP001073.1| Oryza sativa (japonica cultivar-group) geno... 38 4.9
dbj|AP004360.3| Oryza sativa (japonica cultivar-group) geno... 38 4.9
gb|CH401281.1| Oryza sativa (japonica cultivar-group) chrom... 38 4.9
gb|CH401242.1| Oryza sativa (japonica cultivar-group) chrom... 38 4.9
gb|CH401189.1| Oryza sativa (japonica cultivar-group) chrom... 38 4.9
gb|CH401176.1| Oryza sativa (japonica cultivar-group) chrom... 38 4.9
gb|CH401170.1| Oryza sativa (japonica cultivar-group) chrom... 38 4.9
gb|CH401166.1| Oryza sativa (japonica cultivar-group) chrom... 38 4.9
gb|CH401164.1| Oryza sativa (japonica cultivar-group) chrom... 38 4.9
gb|CM000149.1| Oryza sativa (japonica cultivar-group) chrom... 38 4.9
gb|CM000146.1| Oryza sativa (japonica cultivar-group) chrom... 38 4.9
gb|CM000141.1| Oryza sativa (japonica cultivar-group) chrom... 38 4.9
gb|CM000140.1| Oryza sativa (japonica cultivar-group) chrom... 38 4.9
gb|CM000139.1| Oryza sativa (japonica cultivar-group) chrom... 38 4.9
gb|CM000138.1| Oryza sativa (japonica cultivar-group) chrom... 38 4.9
emb|AL663007.2|OSJN00206 Oryza sativa genomic DNA, chromoso... 38 4.9
emb|AL731604.3|OSJN00247 Oryza sativa genomic DNA, chromoso... 38 4.9
emb|AL662942.4|OSJN00135 Oryza sativa genomic DNA, chromoso... 38 4.9
dbj|AP008207.1| Oryza sativa (japonica cultivar-group) geno... 38 4.9
dbj|AP008208.1| Oryza sativa (japonica cultivar-group) geno... 38 4.9
dbj|AP008209.1| Oryza sativa (japonica cultivar-group) geno... 38 4.9
dbj|AP008210.1| Oryza sativa (japonica cultivar-group) geno... 38 4.9
dbj|AP008215.1| Oryza sativa (japonica cultivar-group) geno... 38 4.9
dbj|AP008218.1| Oryza sativa (japonica cultivar-group) geno... 38 4.9
gb|DP000009.1| Oryza sativa (japonica cultivar-group) chrom... 38 4.9
gb|DP000011.1| Oryza sativa (japonica cultivar-group) chrom... 38 4.9
>dbj|AK120913.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023034G08, full
insert sequence
Length = 1966
Score = 60.0 bits (30), Expect = 1e-006
Identities = 117/146 (80%)
Strand = Plus / Plus
Query: 411 tctagacccagcaataaacaaagagccttggtcgcaacaggaggaactaagattgatccg 470
||||||||| ||||| | |||| || | ||||| | | ||||||| ||||||||||| |
Sbjct: 398 tctagaccctgcaatcagcaaacaggcgtggtcacgagaggaggagctaagattgattca 457
Query: 471 tgcgcagcaagtttatggaaacaaatggtgtaaaatggtcaaacatttcccaggcaggac 530
|| || ||| ||| |||||| || ||||||| ||||| |||||||| |||| |||||
Sbjct: 458 tgtccaacaaatttttggaaataagtggtgtagaatggctgaacatttcacagggaggac 517
Query: 531 aaatgatgcactcaaagaacattgga 556
|| || |||| |||||||||| ||||
Sbjct: 518 aagtgctgcaatcaaagaacactgga 543
>emb|AJ495789.1|OSA495789 Oryza sativa (japonica cultivar-group) partial mRNA for MYB20
protein
Length = 1600
Score = 52.0 bits (26), Expect = 3e-004
Identities = 116/146 (79%)
Strand = Plus / Plus
Query: 411 tctagacccagcaataaacaaagagccttggtcgcaacaggaggaactaagattgatccg 470
||||||||| ||||| | |||| || | ||||| | | ||| ||| ||||||||||| |
Sbjct: 116 tctagaccctgcaatcagcaaacaggcgtggtcacgagagggggagctaagattgattca 175
Query: 471 tgcgcagcaagtttatggaaacaaatggtgtaaaatggtcaaacatttcccaggcaggac 530
|| || ||| ||| |||||| || ||||||| ||||| |||||||| |||| |||||
Sbjct: 176 tgtccaacaaatttttggaaataagtggtgtagaatggctgaacatttcacagggaggac 235
Query: 531 aaatgatgcactcaaagaacattgga 556
|| || |||| |||||||||| ||||
Sbjct: 236 aagtgctgcaatcaaagaacactgga 261
>gb|AQ256495.1|AQ256495 nbxb0016K12f CUGI Rice BAC Library Oryza sativa (japonica
cultivar-group) genomic clone nbxb0016K12f, DNA sequence
Length = 692
Score = 38.2 bits (19), Expect = 4.9
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 212 agggacctcctcacaagaa 230
|||||||||||||||||||
Sbjct: 41 agggacctcctcacaagaa 59
>gb|AQ272243.1|AQ272243 nbxb0027P11f CUGI Rice BAC Library Oryza sativa (japonica
cultivar-group) genomic clone nbxb0027P11f, DNA sequence
Length = 569
Score = 38.2 bits (19), Expect = 4.9
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 212 agggacctcctcacaagaa 230
|||||||||||||||||||
Sbjct: 41 agggacctcctcacaagaa 59
>gb|AQ287814.1|AQ287814 nbxb0031K16f CUGI Rice BAC Library Oryza sativa (japonica
cultivar-group) genomic clone nbxb0031K16f, DNA sequence
Length = 654
Score = 38.2 bits (19), Expect = 4.9
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 212 agggacctcctcacaagaa 230
|||||||||||||||||||
Sbjct: 42 agggacctcctcacaagaa 60
>gb|AQ690153.1|AQ690153 nbxb0081O08f CUGI Rice BAC Library Oryza sativa (japonica
cultivar-group) genomic clone nbxb0081O08f, DNA sequence
Length = 461
Score = 38.2 bits (19), Expect = 4.9
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 212 agggacctcctcacaagaa 230
|||||||||||||||||||
Sbjct: 41 agggacctcctcacaagaa 59
>emb|AL713944.3|CNS07YPN Oryza sativa chromosome 12, . BAC OJ1116_G12 of library Monsanto from
chromosome 12 of cultivar Nipponbare of ssp. japonica of
Oryza sativa (rice), complete sequence
Length = 152862
Score = 38.2 bits (19), Expect = 4.9
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 212 agggacctcctcacaagaa 230
|||||||||||||||||||
Sbjct: 17068 agggacctcctcacaagaa 17086
>dbj|AP005408.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
clone:OSJNBa0022A24
Length = 148347
Score = 38.2 bits (19), Expect = 4.9
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 212 agggacctcctcacaagaa 230
|||||||||||||||||||
Sbjct: 42683 agggacctcctcacaagaa 42701
>gb|AC135595.5| Oryza sativa chromosome 3 BAC OSJNBa0028F23 genomic sequence, complete
sequence
Length = 166888
Score = 38.2 bits (19), Expect = 4.9
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 212 agggacctcctcacaagaa 230
|||||||||||||||||||
Sbjct: 88669 agggacctcctcacaagaa 88651
>ref|NT_079837.2| Oryza sativa (japonica cultivar-group)
Length = 3671013
Score = 38.2 bits (19), Expect = 4.9
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 212 agggacctcctcacaagaa 230
|||||||||||||||||||
Sbjct: 2462563 agggacctcctcacaagaa 2462581
>gb|AACV01000643.1| Oryza sativa (japonica cultivar-group) chromosome 1 Ctg000643,
whole genome shotgun sequence
Length = 18449
Score = 38.2 bits (19), Expect = 4.9
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 15 ttgtggtggaatcggagct 33
|||||||||||||||||||
Sbjct: 626 ttgtggtggaatcggagct 608
>gb|AACV01001451.1| Oryza sativa (japonica cultivar-group) chromosome 1 Ctg001451, whole
genome shotgun sequence
Length = 15240
Score = 38.2 bits (19), Expect = 4.9
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 212 agggacctcctcacaagaa 230
|||||||||||||||||||
Sbjct: 3773 agggacctcctcacaagaa 3791
>gb|AACV01004139.1| Oryza sativa (japonica cultivar-group) chromosome 2 Ctg004139, whole
genome shotgun sequence
Length = 14228
Score = 38.2 bits (19), Expect = 4.9
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 212 agggacctcctcacaagaa 230
|||||||||||||||||||
Sbjct: 10884 agggacctcctcacaagaa 10902
>gb|AACV01008141.1| Oryza sativa (japonica cultivar-group) chromosome 3 Ctg008141, whole
genome shotgun sequence
Length = 26453
Score = 38.2 bits (19), Expect = 4.9
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 212 agggacctcctcacaagaa 230
|||||||||||||||||||
Sbjct: 4721 agggacctcctcacaagaa 4739
>gb|AACV01009035.1| Oryza sativa (japonica cultivar-group) chromosome 4 Ctg009035, whole
genome shotgun sequence
Length = 23259
Score = 38.2 bits (19), Expect = 4.9
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 212 agggacctcctcacaagaa 230
|||||||||||||||||||
Sbjct: 16035 agggacctcctcacaagaa 16017
>gb|AACV01009263.1| Oryza sativa (japonica cultivar-group) chromosome 4 Ctg009263, whole
genome shotgun sequence
Length = 7788
Score = 38.2 bits (19), Expect = 4.9
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 212 agggacctcctcacaagaa 230
|||||||||||||||||||
Sbjct: 1825 agggacctcctcacaagaa 1843
>gb|AACV01019708.1| Oryza sativa (japonica cultivar-group) chromosome 9 Ctg019708, whole
genome shotgun sequence
Length = 61228
Score = 38.2 bits (19), Expect = 4.9
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 212 agggacctcctcacaagaa 230
|||||||||||||||||||
Sbjct: 3117 agggacctcctcacaagaa 3135
>gb|AACV01025055.1| Oryza sativa (japonica cultivar-group) chromosome 12 Ctg025055, whole
genome shotgun sequence
Length = 27177
Score = 38.2 bits (19), Expect = 4.9
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 212 agggacctcctcacaagaa 230
|||||||||||||||||||
Sbjct: 21620 agggacctcctcacaagaa 21638
>dbj|BA000010.8| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43342410
Score = 38.2 bits (19), Expect = 4.9
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 212 agggacctcctcacaagaa 230
|||||||||||||||||||
Sbjct: 19784408 agggacctcctcacaagaa 19784390
Score = 38.2 bits (19), Expect = 4.9
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 15 ttgtggtggaatcggagct 33
|||||||||||||||||||
Sbjct: 9252687 ttgtggtggaatcggagct 9252669
>ref|NT_079855.2| Oryza sativa (japonica cultivar-group)
Length = 2354488
Score = 38.2 bits (19), Expect = 4.9
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 212 agggacctcctcacaagaa 230
|||||||||||||||||||
Sbjct: 1257398 agggacctcctcacaagaa 1257380
>ref|NT_079856.2| Oryza sativa (japonica cultivar-group)
Length = 961627
Score = 38.2 bits (19), Expect = 4.9
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 212 agggacctcctcacaagaa 230
|||||||||||||||||||
Sbjct: 693274 agggacctcctcacaagaa 693292
>ref|NT_079926.2| Oryza sativa (japonica cultivar-group)
Length = 8469246
Score = 38.2 bits (19), Expect = 4.9
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 212 agggacctcctcacaagaa 230
|||||||||||||||||||
Sbjct: 2702640 agggacctcctcacaagaa 2702622
>ref|NT_107081.1| Oryza sativa (japonica cultivar-group)
Length = 2169725
Score = 38.2 bits (19), Expect = 4.9
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 212 agggacctcctcacaagaa 230
|||||||||||||||||||
Sbjct: 1465622 agggacctcctcacaagaa 1465640
>ref|NT_107179.1| Oryza sativa (japonica cultivar-group)
Length = 4877845
Score = 38.2 bits (19), Expect = 4.9
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 212 agggacctcctcacaagaa 230
|||||||||||||||||||
Sbjct: 390399 agggacctcctcacaagaa 390417
>ref|NT_107188.1| Oryza sativa (japonica cultivar-group)
Length = 1363716
Score = 38.2 bits (19), Expect = 4.9
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 212 agggacctcctcacaagaa 230
|||||||||||||||||||
Sbjct: 232818 agggacctcctcacaagaa 232836
>dbj|AP005881.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
clone:OSJNBb0057I13
Length = 156330
Score = 38.2 bits (19), Expect = 4.9
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 212 agggacctcctcacaagaa 230
|||||||||||||||||||
Sbjct: 114421 agggacctcctcacaagaa 114439
>ref|NT_036312.3| Oryza sativa (japonica cultivar-group)
Length = 10050053
Score = 38.2 bits (19), Expect = 4.9
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 15 ttgtggtggaatcggagct 33
|||||||||||||||||||
Sbjct: 9252527 ttgtggtggaatcggagct 9252509
>dbj|AP000969.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1,
clone:P0011D01
Length = 168655
Score = 38.2 bits (19), Expect = 4.9
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 15 ttgtggtggaatcggagct 33
|||||||||||||||||||
Sbjct: 155287 ttgtggtggaatcggagct 155269
>dbj|AP001073.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
clone:P0667A10
Length = 152237
Score = 38.2 bits (19), Expect = 4.9
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 15 ttgtggtggaatcggagct 33
|||||||||||||||||||
Sbjct: 31499 ttgtggtggaatcggagct 31481
>dbj|AP004360.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
clone:B1166B08
Length = 147667
Score = 38.2 bits (19), Expect = 4.9
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 212 agggacctcctcacaagaa 230
|||||||||||||||||||
Sbjct: 54313 agggacctcctcacaagaa 54295
>gb|CH401281.1| Oryza sativa (japonica cultivar-group) chromosome 12 scaffold000118 genomic
scaffold, whole genome shotgun sequence
Length = 3660441
Score = 38.2 bits (19), Expect = 4.9
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 212 agggacctcctcacaagaa 230
|||||||||||||||||||
Sbjct: 1274147 agggacctcctcacaagaa 1274165
>gb|CH401242.1| Oryza sativa (japonica cultivar-group) chromosome 9 scaffold000079
genomic scaffold, whole genome shotgun sequence
Length = 12069826
Score = 38.2 bits (19), Expect = 4.9
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 212 agggacctcctcacaagaa 230
|||||||||||||||||||
Sbjct: 117361 agggacctcctcacaagaa 117379
>gb|CH401189.1| Oryza sativa (japonica cultivar-group) chromosome 4 scaffold000026 genomic
scaffold, whole genome shotgun sequence
Length = 11796637
Score = 38.2 bits (19), Expect = 4.9
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 212 agggacctcctcacaagaa 230
|||||||||||||||||||
Sbjct: 4371225 agggacctcctcacaagaa 4371243
Score = 38.2 bits (19), Expect = 4.9
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 212 agggacctcctcacaagaa 230
|||||||||||||||||||
Sbjct: 1037489 agggacctcctcacaagaa 1037471
>gb|CH401176.1| Oryza sativa (japonica cultivar-group) chromosome 3 scaffold000013 genomic
scaffold, whole genome shotgun sequence
Length = 9810738
Score = 38.2 bits (19), Expect = 4.9
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 212 agggacctcctcacaagaa 230
|||||||||||||||||||
Sbjct: 7268826 agggacctcctcacaagaa 7268844
>gb|CH401170.1| Oryza sativa (japonica cultivar-group) chromosome 2 scaffold000007
genomic scaffold, whole genome shotgun sequence
Length = 22563205
Score = 38.2 bits (19), Expect = 4.9
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 212 agggacctcctcacaagaa 230
|||||||||||||||||||
Sbjct: 499543 agggacctcctcacaagaa 499561
>gb|CH401166.1| Oryza sativa (japonica cultivar-group) chromosome 1 scaffold000003 genomic
scaffold, whole genome shotgun sequence
Length = 8539496
Score = 38.2 bits (19), Expect = 4.9
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 212 agggacctcctcacaagaa 230
|||||||||||||||||||
Sbjct: 2801307 agggacctcctcacaagaa 2801289
>gb|CH401164.1| Oryza sativa (japonica cultivar-group) chromosome 1 scaffold000001 genomic
scaffold, whole genome shotgun sequence
Length = 11616395
Score = 38.2 bits (19), Expect = 4.9
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 15 ttgtggtggaatcggagct 33
|||||||||||||||||||
Sbjct: 9274999 ttgtggtggaatcggagct 9274981
>gb|CM000149.1| Oryza sativa (japonica cultivar-group) chromosome 12, whole genome shotgun
sequence
Length = 23730396
Score = 38.2 bits (19), Expect = 4.9
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 212 agggacctcctcacaagaa 230
|||||||||||||||||||
Sbjct: 16797252 agggacctcctcacaagaa 16797270
>gb|CM000146.1| Oryza sativa (japonica cultivar-group) chromosome 9, whole genome shotgun
sequence
Length = 21543637
Score = 38.2 bits (19), Expect = 4.9
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 212 agggacctcctcacaagaa 230
|||||||||||||||||||
Sbjct: 9591172 agggacctcctcacaagaa 9591190
>gb|CM000141.1| Oryza sativa (japonica cultivar-group) chromosome 4, whole genome shotgun
sequence
Length = 32311234
Score = 38.2 bits (19), Expect = 4.9
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 212 agggacctcctcacaagaa 230
|||||||||||||||||||
Sbjct: 11718587 agggacctcctcacaagaa 11718605
Score = 38.2 bits (19), Expect = 4.9
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 212 agggacctcctcacaagaa 230
|||||||||||||||||||
Sbjct: 8384851 agggacctcctcacaagaa 8384833
>gb|CM000140.1| Oryza sativa (japonica cultivar-group) chromosome 3, whole genome shotgun
sequence
Length = 37803064
Score = 38.2 bits (19), Expect = 4.9
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 212 agggacctcctcacaagaa 230
|||||||||||||||||||
Sbjct: 34534989 agggacctcctcacaagaa 34535007
>gb|CM000139.1| Oryza sativa (japonica cultivar-group) chromosome 2, whole genome shotgun
sequence
Length = 36016269
Score = 38.2 bits (19), Expect = 4.9
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 212 agggacctcctcacaagaa 230
|||||||||||||||||||
Sbjct: 13952607 agggacctcctcacaagaa 13952625
>gb|CM000138.1| Oryza sativa (japonica cultivar-group) chromosome 1, whole genome shotgun
sequence
Length = 42596331
Score = 38.2 bits (19), Expect = 4.9
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 212 agggacctcctcacaagaa 230
|||||||||||||||||||
Sbjct: 19426430 agggacctcctcacaagaa 19426412
Score = 38.2 bits (19), Expect = 4.9
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 15 ttgtggtggaatcggagct 33
|||||||||||||||||||
Sbjct: 9274999 ttgtggtggaatcggagct 9274981
>emb|AL663007.2|OSJN00206 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0054B09,
complete sequence
Length = 146506
Score = 38.2 bits (19), Expect = 4.9
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 212 agggacctcctcacaagaa 230
|||||||||||||||||||
Sbjct: 3399 agggacctcctcacaagaa 3417
>emb|AL731604.3|OSJN00247 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0042D13,
complete sequence
Length = 163429
Score = 38.2 bits (19), Expect = 4.9
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 212 agggacctcctcacaagaa 230
|||||||||||||||||||
Sbjct: 84147 agggacctcctcacaagaa 84129
>emb|AL662942.4|OSJN00135 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0033H08,
complete sequence
Length = 141899
Score = 38.2 bits (19), Expect = 4.9
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 212 agggacctcctcacaagaa 230
|||||||||||||||||||
Sbjct: 7315 agggacctcctcacaagaa 7297
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43261740
Score = 38.2 bits (19), Expect = 4.9
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 212 agggacctcctcacaagaa 230
|||||||||||||||||||
Sbjct: 19705691 agggacctcctcacaagaa 19705673
Score = 38.2 bits (19), Expect = 4.9
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 15 ttgtggtggaatcggagct 33
|||||||||||||||||||
Sbjct: 9254905 ttgtggtggaatcggagct 9254887
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
sequence
Length = 35954743
Score = 38.2 bits (19), Expect = 4.9
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 212 agggacctcctcacaagaa 230
|||||||||||||||||||
Sbjct: 14320761 agggacctcctcacaagaa 14320779
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
sequence
Length = 36192742
Score = 38.2 bits (19), Expect = 4.9
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 212 agggacctcctcacaagaa 230
|||||||||||||||||||
Sbjct: 33666883 agggacctcctcacaagaa 33666901
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
sequence
Length = 35498469
Score = 38.2 bits (19), Expect = 4.9
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 212 agggacctcctcacaagaa 230
|||||||||||||||||||
Sbjct: 14165632 agggacctcctcacaagaa 14165650
Score = 38.2 bits (19), Expect = 4.9
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 212 agggacctcctcacaagaa 230
|||||||||||||||||||
Sbjct: 10584810 agggacctcctcacaagaa 10584792
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
sequence
Length = 22696651
Score = 38.2 bits (19), Expect = 4.9
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 212 agggacctcctcacaagaa 230
|||||||||||||||||||
Sbjct: 10662109 agggacctcctcacaagaa 10662127
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
sequence
Length = 27566993
Score = 38.2 bits (19), Expect = 4.9
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 212 agggacctcctcacaagaa 230
|||||||||||||||||||
Sbjct: 20152834 agggacctcctcacaagaa 20152852
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
Length = 36102668
Score = 38.2 bits (19), Expect = 4.9
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 212 agggacctcctcacaagaa 230
|||||||||||||||||||
Sbjct: 33576411 agggacctcctcacaagaa 33576429
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
Length = 27492551
Score = 38.2 bits (19), Expect = 4.9
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 212 agggacctcctcacaagaa 230
|||||||||||||||||||
Sbjct: 20079048 agggacctcctcacaagaa 20079066
Database: Oryza_nucl_with_EST.fasta
Posted date: May 2, 2006 3:04 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 773,471
Number of Sequences: 438736
Number of extensions: 773471
Number of successful extensions: 18838
Number of sequences better than 10.0: 54
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 17710
Number of HSP's gapped (non-prelim): 1128
length of query: 559
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 538
effective length of database: 2,791,206,460
effective search space: 1501669075480
effective search space used: 1501669075480
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)