BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QBTB.063F13F020916.3.1
(668 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AACV01020974.1| Oryza sativa (japonica cultivar-group) c... 74 1e-010
ref|NM_195134.1| Oryza sativa (japonica cultivar-group) put... 74 1e-010
ref|NT_080061.1| Oryza sativa (japonica cultivar-group) chr... 74 1e-010
gb|CH401245.1| Oryza sativa (japonica cultivar-group) chrom... 74 1e-010
gb|CM000147.1| Oryza sativa (japonica cultivar-group) chrom... 74 1e-010
dbj|AP008216.1| Oryza sativa (japonica cultivar-group) geno... 74 1e-010
gb|AE016959.3| Oryza sativa (japonica cultivar-group) chrom... 74 1e-010
dbj|AK108554.1| Oryza sativa (japonica cultivar-group) cDNA... 72 4e-010
dbj|AP003996.3| Oryza sativa (japonica cultivar-group) geno... 72 4e-010
dbj|AP004064.3| Oryza sativa (japonica cultivar-group) geno... 72 4e-010
gb|AACV01005620.1| Oryza sativa (japonica cultivar-group) c... 72 4e-010
ref|XM_468310.1| Oryza sativa (japonica cultivar-group), mRNA 72 4e-010
ref|NT_107182.1| Oryza sativa (japonica cultivar-group) 72 4e-010
gb|CH401170.1| Oryza sativa (japonica cultivar-group) chrom... 72 4e-010
gb|CM000139.1| Oryza sativa (japonica cultivar-group) chrom... 72 4e-010
dbj|AP008208.1| Oryza sativa (japonica cultivar-group) geno... 72 4e-010
gb|AACV01005617.1| Oryza sativa (japonica cultivar-group) c... 68 7e-009
ref|XM_468307.1| Oryza sativa (japonica cultivar-group), mRNA 68 7e-009
gb|CZ593793.1|CZ593793 UCDRGT705_5.1 UCD RGT Rice Insertion... 60 2e-006
dbj|AK103831.1| Oryza sativa (japonica cultivar-group) cDNA... 60 2e-006
gb|AC069158.6| Genomic Sequence for Oryza sativa, Nipponbar... 60 2e-006
gb|AACV01005615.1| Oryza sativa (japonica cultivar-group) c... 60 2e-006
gb|AACV01005618.1| Oryza sativa (japonica cultivar-group) c... 60 2e-006
ref|XM_468303.1| Oryza sativa (japonica cultivar-group), mRNA 60 2e-006
ref|XM_468308.1| Oryza sativa (japonica cultivar-group), mRNA 60 2e-006
gb|CB655346.1|CB655346 OSJNEc08K11.f OSJNEc Oryza sativa (j... 56 3e-005
dbj|AK119304.1| Oryza sativa (japonica cultivar-group) cDNA... 56 3e-005
dbj|AK119448.1| Oryza sativa (japonica cultivar-group) cDNA... 56 3e-005
emb|BX000457.2|CNS08CDE Oryza sativa chromosome 12, . BAC O... 56 3e-005
ref|NT_107152.1| Oryza sativa (japonica cultivar-group) 56 3e-005
gb|AACV01025524.1| Oryza sativa (japonica cultivar-group) c... 56 3e-005
gb|CH401282.1| Oryza sativa (japonica cultivar-group) chrom... 56 3e-005
gb|CM000149.1| Oryza sativa (japonica cultivar-group) chrom... 56 3e-005
dbj|AP008218.1| Oryza sativa (japonica cultivar-group) geno... 56 3e-005
gb|DP000011.1| Oryza sativa (japonica cultivar-group) chrom... 56 3e-005
gb|AC113336.2| Genomic sequence for Oryza sativa, Nipponbar... 54 1e-004
gb|AACV01020971.1| Oryza sativa (japonica cultivar-group) c... 54 1e-004
ref|NM_195127.1| Oryza sativa (japonica cultivar-group) put... 54 1e-004
gb|CB641176.1|CB641176 OSJNEa18C13.f OSJNEa Oryza sativa (j... 52 4e-004
gb|CB641200.1|CB641200 OSJNEa18D21.f OSJNEa Oryza sativa (j... 52 4e-004
dbj|AK058435.1| Oryza sativa (japonica cultivar-group) cDNA... 52 4e-004
dbj|AK119341.1| Oryza sativa (japonica cultivar-group) cDNA... 52 4e-004
dbj|AP005840.4| Oryza sativa (japonica cultivar-group) geno... 52 4e-004
gb|AACV01008791.1| Oryza sativa (japonica cultivar-group) c... 52 4e-004
gb|AACV01015252.1| Oryza sativa (japonica cultivar-group) c... 52 4e-004
ref|XM_474920.1| Oryza sativa (japonica cultivar-group), p... 52 4e-004
ref|NT_107204.1| Oryza sativa (japonica cultivar-group) 52 4e-004
ref|NT_079879.2| Oryza sativa (japonica cultivar-group) 52 4e-004
gb|CH401220.1| Oryza sativa (japonica cultivar-group) chrom... 52 4e-004
gb|CH401185.1| Oryza sativa (japonica cultivar-group) chrom... 52 4e-004
gb|CM000144.1| Oryza sativa (japonica cultivar-group) chrom... 52 4e-004
gb|CM000141.1| Oryza sativa (japonica cultivar-group) chrom... 52 4e-004
emb|AL606601.3|OSJN00029 Oryza sativa genomic DNA, chromoso... 52 4e-004
dbj|AP008210.1| Oryza sativa (japonica cultivar-group) geno... 52 4e-004
dbj|AP008213.1| Oryza sativa (japonica cultivar-group) geno... 52 4e-004
emb|AL732379.5|CNS08C92 Oryza sativa chromosome 3, . BAC OS... 48 0.006
ref|NT_107107.1| Oryza sativa chromosome 3, . BAC OSJNBa002... 48 0.006
gb|AC145383.3| Oryza sativa chromosome 3 BAC OSJNBa0038E17 ... 48 0.006
gb|AACV01007452.1| Oryza sativa (japonica cultivar-group) c... 48 0.006
gb|CH401174.1| Oryza sativa (japonica cultivar-group) chrom... 48 0.006
gb|CM000140.1| Oryza sativa (japonica cultivar-group) chrom... 48 0.006
dbj|AP008209.1| Oryza sativa (japonica cultivar-group) geno... 48 0.006
gb|DP000009.1| Oryza sativa (japonica cultivar-group) chrom... 48 0.006
ref|NT_107078.1| Oryza sativa (japonica cultivar-group) 46 0.024
dbj|AP005396.3| Oryza sativa (japonica cultivar-group) geno... 46 0.024
gb|AACV01020538.1| Oryza sativa (japonica cultivar-group) c... 46 0.024
gb|CH401242.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.024
gb|CM000146.1| Oryza sativa (japonica cultivar-group) chrom... 46 0.024
dbj|AP008215.1| Oryza sativa (japonica cultivar-group) geno... 46 0.024
gb|AACV01007449.1| Oryza sativa (japonica cultivar-group) c... 44 0.095
gb|AU182475.1|AU182475 AU182475 Rice panicle at flowering s... 42 0.38
dbj|AK107296.1| Oryza sativa (japonica cultivar-group) cDNA... 42 0.38
gb|AC092781.6| Oryza sativa chromosome 3 BAC OSJNBb0094O03 ... 42 0.38
gb|AC133450.6| Oryza sativa chromosome 3 BAC OSJNBa0072F13 ... 42 0.38
gb|AACV01008001.1| Oryza sativa (japonica cultivar-group) c... 42 0.38
gb|AACV01008003.1| Oryza sativa (japonica cultivar-group) c... 42 0.38
ref|NM_184889.1| Oryza sativa (japonica cultivar-group), mRNA 42 0.38
ref|NT_107187.1| Oryza sativa (japonica cultivar-group) 42 0.38
gb|CH401176.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.38
>gb|AACV01020974.1| Oryza sativa (japonica cultivar-group) chromosome 10 Ctg020974,
whole genome shotgun sequence
Length = 14017
Score = 73.8 bits (37), Expect = 1e-010
Identities = 55/61 (90%)
Strand = Plus / Plus
Query: 147 cactcccagggtgccccgacaagtgcggcaacataagcatcccctaccctttcggcacca 206
||||||| || |||||||||||||||||| |||| |||||||| ||||| ||||||||||
Sbjct: 677 cactccccggatgccccgacaagtgcggcgacatcagcatcccttacccgttcggcacca 736
Query: 207 a 207
|
Sbjct: 737 a 737
>ref|NM_195134.1| Oryza sativa (japonica cultivar-group) putative wall-associated
protein kinase (OSJNBa0051J07.6), mRNA
Length = 1017
Score = 73.8 bits (37), Expect = 1e-010
Identities = 55/61 (90%)
Strand = Plus / Plus
Query: 147 cactcccagggtgccccgacaagtgcggcaacataagcatcccctaccctttcggcacca 206
||||||| || |||||||||||||||||| |||| |||||||| ||||| ||||||||||
Sbjct: 119 cactccccggatgccccgacaagtgcggcgacatcagcatcccttacccgttcggcacca 178
Query: 207 a 207
|
Sbjct: 179 a 179
>ref|NT_080061.1| Oryza sativa (japonica cultivar-group) chromosome 10
Length = 2697502
Score = 73.8 bits (37), Expect = 1e-010
Identities = 55/61 (90%)
Strand = Plus / Plus
Query: 147 cactcccagggtgccccgacaagtgcggcaacataagcatcccctaccctttcggcacca 206
||||||| || |||||||||||||||||| |||| |||||||| ||||| ||||||||||
Sbjct: 885218 cactccccggatgccccgacaagtgcggcgacatcagcatcccttacccgttcggcacca 885277
Query: 207 a 207
|
Sbjct: 885278 a 885278
Score = 54.0 bits (27), Expect = 1e-004
Identities = 51/59 (86%)
Strand = Plus / Minus
Query: 146 acactcccagggtgccccgacaagtgcggcaacataagcatcccctaccctttcggcac 204
||||| ||||| ||| |||||||||||||||||| ||||| |||| ||| ||||||||
Sbjct: 852062 acacttccaggctgcatcgacaagtgcggcaacatcagcatacccttcccgttcggcac 852004
>gb|CH401245.1| Oryza sativa (japonica cultivar-group) chromosome 10 scaffold000082 genomic
scaffold, whole genome shotgun sequence
Length = 3323203
Score = 73.8 bits (37), Expect = 1e-010
Identities = 55/61 (90%)
Strand = Plus / Plus
Query: 147 cactcccagggtgccccgacaagtgcggcaacataagcatcccctaccctttcggcacca 206
||||||| || |||||||||||||||||| |||| |||||||| ||||| ||||||||||
Sbjct: 1658155 cactccccggatgccccgacaagtgcggcgacatcagcatcccttacccgttcggcacca 1658214
Query: 207 a 207
|
Sbjct: 1658215 a 1658215
Score = 54.0 bits (27), Expect = 1e-004
Identities = 51/59 (86%)
Strand = Plus / Minus
Query: 146 acactcccagggtgccccgacaagtgcggcaacataagcatcccctaccctttcggcac 204
||||| ||||| ||| |||||||||||||||||| ||||| |||| ||| ||||||||
Sbjct: 1628195 acacttccaggctgcatcgacaagtgcggcaacatcagcatacccttcccgttcggcac 1628137
>gb|CM000147.1| Oryza sativa (japonica cultivar-group) chromosome 10, whole genome shotgun
sequence
Length = 21480893
Score = 73.8 bits (37), Expect = 1e-010
Identities = 55/61 (90%)
Strand = Plus / Plus
Query: 147 cactcccagggtgccccgacaagtgcggcaacataagcatcccctaccctttcggcacca 206
||||||| || |||||||||||||||||| |||| |||||||| ||||| ||||||||||
Sbjct: 4926606 cactccccggatgccccgacaagtgcggcgacatcagcatcccttacccgttcggcacca 4926665
Query: 207 a 207
|
Sbjct: 4926666 a 4926666
Score = 54.0 bits (27), Expect = 1e-004
Identities = 51/59 (86%)
Strand = Plus / Minus
Query: 146 acactcccagggtgccccgacaagtgcggcaacataagcatcccctaccctttcggcac 204
||||| ||||| ||| |||||||||||||||||| ||||| |||| ||| ||||||||
Sbjct: 4896646 acacttccaggctgcatcgacaagtgcggcaacatcagcatacccttcccgttcggcac 4896588
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
sequence
Length = 22685906
Score = 73.8 bits (37), Expect = 1e-010
Identities = 55/61 (90%)
Strand = Plus / Plus
Query: 147 cactcccagggtgccccgacaagtgcggcaacataagcatcccctaccctttcggcacca 206
||||||| || |||||||||||||||||| |||| |||||||| ||||| ||||||||||
Sbjct: 4888391 cactccccggatgccccgacaagtgcggcgacatcagcatcccttacccgttcggcacca 4888450
Query: 207 a 207
|
Sbjct: 4888451 a 4888451
Score = 54.0 bits (27), Expect = 1e-004
Identities = 51/59 (86%)
Strand = Plus / Minus
Query: 146 acactcccagggtgccccgacaagtgcggcaacataagcatcccctaccctttcggcac 204
||||| ||||| ||| |||||||||||||||||| ||||| |||| ||| ||||||||
Sbjct: 4855235 acacttccaggctgcatcgacaagtgcggcaacatcagcatacccttcccgttcggcac 4855177
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
Length = 22698374
Score = 73.8 bits (37), Expect = 1e-010
Identities = 55/61 (90%)
Strand = Plus / Plus
Query: 147 cactcccagggtgccccgacaagtgcggcaacataagcatcccctaccctttcggcacca 206
||||||| || |||||||||||||||||| |||| |||||||| ||||| ||||||||||
Sbjct: 4889178 cactccccggatgccccgacaagtgcggcgacatcagcatcccttacccgttcggcacca 4889237
Query: 207 a 207
|
Sbjct: 4889238 a 4889238
Score = 54.0 bits (27), Expect = 1e-004
Identities = 51/59 (86%)
Strand = Plus / Minus
Query: 146 acactcccagggtgccccgacaagtgcggcaacataagcatcccctaccctttcggcac 204
||||| ||||| ||| |||||||||||||||||| ||||| |||| ||| ||||||||
Sbjct: 4856056 acacttccaggctgcatcgacaagtgcggcaacatcagcatacccttcccgttcggcac 4855998
>dbj|AK108554.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-144-E09, full
insert sequence
Length = 1364
Score = 71.9 bits (36), Expect = 4e-010
Identities = 42/44 (95%)
Strand = Plus / Plus
Query: 158 tgccccgacaagtgcggcaacataagcatcccctaccctttcgg 201
|||||||||||||||||| |||| ||||||||||||||||||||
Sbjct: 119 tgccccgacaagtgcggcgacatcagcatcccctaccctttcgg 162
>dbj|AP003996.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
clone:OJ1112_G06
Length = 122580
Score = 71.9 bits (36), Expect = 4e-010
Identities = 42/44 (95%)
Strand = Plus / Plus
Query: 158 tgccccgacaagtgcggcaacataagcatcccctaccctttcgg 201
|||||||||||||||||| |||| ||||||||||||||||||||
Sbjct: 30502 tgccccgacaagtgcggcgacatcagcatcccctaccctttcgg 30545
Score = 60.0 bits (30), Expect = 2e-006
Identities = 42/46 (91%)
Strand = Plus / Minus
Query: 158 tgccccgacaagtgcggcaacataagcatcccctaccctttcggca 203
||||||||||||||||| |||| |||||||||||||| |||||||
Sbjct: 19288 tgccccgacaagtgcgggaacaccagcatcccctacccattcggca 19243
Score = 52.0 bits (26), Expect = 4e-004
Identities = 41/46 (89%)
Strand = Plus / Minus
Query: 158 tgccccgacaagtgcggcaacataagcatcccctaccctttcggca 203
|||||||||| |||||||||||| ||| | |||||||| |||||||
Sbjct: 4457 tgccccgacaggtgcggcaacatcagcgttccctaccccttcggca 4412
>dbj|AP004064.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
clone:OJ1520_C09
Length = 145553
Score = 71.9 bits (36), Expect = 4e-010
Identities = 42/44 (95%)
Strand = Plus / Plus
Query: 158 tgccccgacaagtgcggcaacataagcatcccctaccctttcgg 201
|||||||||||||||||| |||| ||||||||||||||||||||
Sbjct: 74827 tgccccgacaagtgcggcgacatcagcatcccctaccctttcgg 74870
Score = 67.9 bits (34), Expect = 7e-009
Identities = 43/46 (93%)
Strand = Plus / Minus
Query: 158 tgccccgacaagtgcggcaacataagcatcccctaccctttcggca 203
||||| ||||||||||||||||| |||||||||||||| |||||||
Sbjct: 41964 tgccctgacaagtgcggcaacatcagcatcccctaccccttcggca 41919
Score = 60.0 bits (30), Expect = 2e-006
Identities = 42/46 (91%)
Strand = Plus / Minus
Query: 158 tgccccgacaagtgcggcaacataagcatcccctaccctttcggca 203
||||||||||||||||| |||| |||||||||||||| |||||||
Sbjct: 63613 tgccccgacaagtgcgggaacaccagcatcccctacccattcggca 63568
Score = 60.0 bits (30), Expect = 2e-006
Identities = 42/46 (91%)
Strand = Plus / Minus
Query: 158 tgccccgacaagtgcggcaacataagcatcccctaccctttcggca 203
||||||||||||||||| ||||| |||||| ||||||| |||||||
Sbjct: 15098 tgccccgacaagtgcgggaacatcagcatctcctaccccttcggca 15053
Score = 52.0 bits (26), Expect = 4e-004
Identities = 41/46 (89%)
Strand = Plus / Minus
Query: 158 tgccccgacaagtgcggcaacataagcatcccctaccctttcggca 203
|||||||||| |||||||||||| ||| | |||||||| |||||||
Sbjct: 48782 tgccccgacaggtgcggcaacatcagcgttccctaccccttcggca 48737
>gb|AACV01005620.1| Oryza sativa (japonica cultivar-group) chromosome 2 Ctg005620, whole
genome shotgun sequence
Length = 25089
Score = 71.9 bits (36), Expect = 4e-010
Identities = 42/44 (95%)
Strand = Plus / Minus
Query: 158 tgccccgacaagtgcggcaacataagcatcccctaccctttcgg 201
|||||||||||||||||| |||| ||||||||||||||||||||
Sbjct: 22994 tgccccgacaagtgcggcgacatcagcatcccctaccctttcgg 22951
>ref|XM_468310.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 1365
Score = 71.9 bits (36), Expect = 4e-010
Identities = 42/44 (95%)
Strand = Plus / Plus
Query: 158 tgccccgacaagtgcggcaacataagcatcccctaccctttcgg 201
|||||||||||||||||| |||| ||||||||||||||||||||
Sbjct: 119 tgccccgacaagtgcggcgacatcagcatcccctaccctttcgg 162
>ref|NT_107182.1| Oryza sativa (japonica cultivar-group)
Length = 1785023
Score = 71.9 bits (36), Expect = 4e-010
Identities = 42/44 (95%)
Strand = Plus / Plus
Query: 158 tgccccgacaagtgcggcaacataagcatcccctaccctttcgg 201
|||||||||||||||||| |||| ||||||||||||||||||||
Sbjct: 399160 tgccccgacaagtgcggcgacatcagcatcccctaccctttcgg 399203
Score = 67.9 bits (34), Expect = 7e-009
Identities = 43/46 (93%)
Strand = Plus / Minus
Query: 158 tgccccgacaagtgcggcaacataagcatcccctaccctttcggca 203
||||| ||||||||||||||||| |||||||||||||| |||||||
Sbjct: 366297 tgccctgacaagtgcggcaacatcagcatcccctaccccttcggca 366252
Score = 60.0 bits (30), Expect = 2e-006
Identities = 42/46 (91%)
Strand = Plus / Minus
Query: 158 tgccccgacaagtgcggcaacataagcatcccctaccctttcggca 203
||||||||||||||||| |||| |||||||||||||| |||||||
Sbjct: 387946 tgccccgacaagtgcgggaacaccagcatcccctacccattcggca 387901
Score = 60.0 bits (30), Expect = 2e-006
Identities = 42/46 (91%)
Strand = Plus / Minus
Query: 158 tgccccgacaagtgcggcaacataagcatcccctaccctttcggca 203
||||||||||||||||| ||||| |||||| ||||||| |||||||
Sbjct: 339431 tgccccgacaagtgcgggaacatcagcatctcctaccccttcggca 339386
Score = 52.0 bits (26), Expect = 4e-004
Identities = 41/46 (89%)
Strand = Plus / Minus
Query: 158 tgccccgacaagtgcggcaacataagcatcccctaccctttcggca 203
|||||||||| |||||||||||| ||| | |||||||| |||||||
Sbjct: 373115 tgccccgacaggtgcggcaacatcagcgttccctaccccttcggca 373070
>gb|CH401170.1| Oryza sativa (japonica cultivar-group) chromosome 2 scaffold000007 genomic
scaffold, whole genome shotgun sequence
Length = 22563205
Score = 71.9 bits (36), Expect = 4e-010
Identities = 42/44 (95%)
Strand = Plus / Plus
Query: 158 tgccccgacaagtgcggcaacataagcatcccctaccctttcgg 201
|||||||||||||||||| |||| ||||||||||||||||||||
Sbjct: 21197220 tgccccgacaagtgcggcgacatcagcatcccctaccctttcgg 21197263
Score = 67.9 bits (34), Expect = 7e-009
Identities = 43/46 (93%)
Strand = Plus / Minus
Query: 158 tgccccgacaagtgcggcaacataagcatcccctaccctttcggca 203
||||| ||||||||||||||||| |||||||||||||| |||||||
Sbjct: 21168146 tgccctgacaagtgcggcaacatcagcatcccctaccccttcggca 21168101
Score = 60.0 bits (30), Expect = 2e-006
Identities = 42/46 (91%)
Strand = Plus / Minus
Query: 158 tgccccgacaagtgcggcaacataagcatcccctaccctttcggca 203
||||||||||||||||| |||| |||||||||||||| |||||||
Sbjct: 21184867 tgccccgacaagtgcgggaacaccagcatcccctacccattcggca 21184822
Score = 60.0 bits (30), Expect = 2e-006
Identities = 42/46 (91%)
Strand = Plus / Minus
Query: 158 tgccccgacaagtgcggcaacataagcatcccctaccctttcggca 203
||||||||||||||||| ||||| |||||| ||||||| |||||||
Sbjct: 21140004 tgccccgacaagtgcgggaacatcagcatctcctaccccttcggca 21139959
Score = 52.0 bits (26), Expect = 4e-004
Identities = 41/46 (89%)
Strand = Plus / Minus
Query: 158 tgccccgacaagtgcggcaacataagcatcccctaccctttcggca 203
|||||||||| |||||||||||| ||| | |||||||| |||||||
Sbjct: 21174964 tgccccgacaggtgcggcaacatcagcgttccctaccccttcggca 21174919
>gb|CM000139.1| Oryza sativa (japonica cultivar-group) chromosome 2, whole genome shotgun
sequence
Length = 36016269
Score = 71.9 bits (36), Expect = 4e-010
Identities = 42/44 (95%)
Strand = Plus / Plus
Query: 158 tgccccgacaagtgcggcaacataagcatcccctaccctttcgg 201
|||||||||||||||||| |||| ||||||||||||||||||||
Sbjct: 34650284 tgccccgacaagtgcggcgacatcagcatcccctaccctttcgg 34650327
Score = 67.9 bits (34), Expect = 7e-009
Identities = 43/46 (93%)
Strand = Plus / Minus
Query: 158 tgccccgacaagtgcggcaacataagcatcccctaccctttcggca 203
||||| ||||||||||||||||| |||||||||||||| |||||||
Sbjct: 34621210 tgccctgacaagtgcggcaacatcagcatcccctaccccttcggca 34621165
Score = 60.0 bits (30), Expect = 2e-006
Identities = 42/46 (91%)
Strand = Plus / Minus
Query: 158 tgccccgacaagtgcggcaacataagcatcccctaccctttcggca 203
||||||||||||||||| |||| |||||||||||||| |||||||
Sbjct: 34637931 tgccccgacaagtgcgggaacaccagcatcccctacccattcggca 34637886
Score = 60.0 bits (30), Expect = 2e-006
Identities = 42/46 (91%)
Strand = Plus / Minus
Query: 158 tgccccgacaagtgcggcaacataagcatcccctaccctttcggca 203
||||||||||||||||| ||||| |||||| ||||||| |||||||
Sbjct: 34593068 tgccccgacaagtgcgggaacatcagcatctcctaccccttcggca 34593023
Score = 52.0 bits (26), Expect = 4e-004
Identities = 41/46 (89%)
Strand = Plus / Minus
Query: 158 tgccccgacaagtgcggcaacataagcatcccctaccctttcggca 203
|||||||||| |||||||||||| ||| | |||||||| |||||||
Sbjct: 34628028 tgccccgacaggtgcggcaacatcagcgttccctaccccttcggca 34627983
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
sequence
Length = 35954743
Score = 71.9 bits (36), Expect = 4e-010
Identities = 42/44 (95%)
Strand = Plus / Plus
Query: 158 tgccccgacaagtgcggcaacataagcatcccctaccctttcgg 201
|||||||||||||||||| |||| ||||||||||||||||||||
Sbjct: 34563887 tgccccgacaagtgcggcgacatcagcatcccctaccctttcgg 34563930
Score = 67.9 bits (34), Expect = 7e-009
Identities = 43/46 (93%)
Strand = Plus / Minus
Query: 158 tgccccgacaagtgcggcaacataagcatcccctaccctttcggca 203
||||| ||||||||||||||||| |||||||||||||| |||||||
Sbjct: 34531024 tgccctgacaagtgcggcaacatcagcatcccctaccccttcggca 34530979
Score = 60.0 bits (30), Expect = 2e-006
Identities = 42/46 (91%)
Strand = Plus / Minus
Query: 158 tgccccgacaagtgcggcaacataagcatcccctaccctttcggca 203
||||||||||||||||| |||| |||||||||||||| |||||||
Sbjct: 34552673 tgccccgacaagtgcgggaacaccagcatcccctacccattcggca 34552628
Score = 60.0 bits (30), Expect = 2e-006
Identities = 42/46 (91%)
Strand = Plus / Minus
Query: 158 tgccccgacaagtgcggcaacataagcatcccctaccctttcggca 203
||||||||||||||||| ||||| |||||| ||||||| |||||||
Sbjct: 34504158 tgccccgacaagtgcgggaacatcagcatctcctaccccttcggca 34504113
Score = 52.0 bits (26), Expect = 4e-004
Identities = 41/46 (89%)
Strand = Plus / Minus
Query: 158 tgccccgacaagtgcggcaacataagcatcccctaccctttcggca 203
|||||||||| |||||||||||| ||| | |||||||| |||||||
Sbjct: 34537842 tgccccgacaggtgcggcaacatcagcgttccctaccccttcggca 34537797
>gb|AACV01005617.1| Oryza sativa (japonica cultivar-group) chromosome 2 Ctg005617, whole
genome shotgun sequence
Length = 29110
Score = 67.9 bits (34), Expect = 7e-009
Identities = 43/46 (93%)
Strand = Plus / Plus
Query: 158 tgccccgacaagtgcggcaacataagcatcccctaccctttcggca 203
||||| ||||||||||||||||| |||||||||||||| |||||||
Sbjct: 9928 tgccctgacaagtgcggcaacatcagcatcccctaccccttcggca 9973
Score = 52.0 bits (26), Expect = 4e-004
Identities = 41/46 (89%)
Strand = Plus / Plus
Query: 158 tgccccgacaagtgcggcaacataagcatcccctaccctttcggca 203
|||||||||| |||||||||||| ||| | |||||||| |||||||
Sbjct: 3110 tgccccgacaggtgcggcaacatcagcgttccctaccccttcggca 3155
>ref|XM_468307.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 2271
Score = 67.9 bits (34), Expect = 7e-009
Identities = 43/46 (93%)
Strand = Plus / Plus
Query: 158 tgccccgacaagtgcggcaacataagcatcccctaccctttcggca 203
||||| ||||||||||||||||| |||||||||||||| |||||||
Sbjct: 112 tgccctgacaagtgcggcaacatcagcatcccctaccccttcggca 157
>gb|CZ593793.1|CZ593793 UCDRGT705_5.1 UCD RGT Rice Insertions Oryza sativa (japonica
cultivar-group) genomic clone RGT705_5.1, DNA sequence
Length = 325
Score = 60.0 bits (30), Expect = 2e-006
Identities = 42/46 (91%)
Strand = Plus / Minus
Query: 158 tgccccgacaagtgcggcaacataagcatcccctaccctttcggca 203
||||||||||||||||| ||||| |||||| ||||||| |||||||
Sbjct: 121 tgccccgacaagtgcgggaacatcagcatctcctaccccttcggca 76
>dbj|AK103831.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033148A20, full
insert sequence
Length = 2101
Score = 60.0 bits (30), Expect = 2e-006
Identities = 42/46 (91%)
Strand = Plus / Minus
Query: 158 tgccccgacaagtgcggcaacataagcatcccctaccctttcggca 203
||||||||||||||||| ||||| |||||| ||||||| |||||||
Sbjct: 1671 tgccccgacaagtgcgggaacatcagcatctcctaccccttcggca 1626
>gb|AC069158.6| Genomic Sequence for Oryza sativa, Nipponbare strain, clone
OSJNBa0049O12, from chromosome 2, complete sequence
Length = 155154
Score = 60.0 bits (30), Expect = 2e-006
Identities = 42/46 (91%)
Strand = Plus / Plus
Query: 158 tgccccgacaagtgcggcaacataagcatcccctaccctttcggca 203
||||||||||||||||| ||||| |||||| ||||||| |||||||
Sbjct: 1041 tgccccgacaagtgcgggaacatcagcatctcctaccccttcggca 1086
>gb|AACV01005615.1| Oryza sativa (japonica cultivar-group) chromosome 2 Ctg005615, whole
genome shotgun sequence
Length = 28875
Score = 60.0 bits (30), Expect = 2e-006
Identities = 42/46 (91%)
Strand = Plus / Plus
Query: 158 tgccccgacaagtgcggcaacataagcatcccctaccctttcggca 203
||||||||||||||||| ||||| |||||| ||||||| |||||||
Sbjct: 5122 tgccccgacaagtgcgggaacatcagcatctcctaccccttcggca 5167
>gb|AACV01005618.1| Oryza sativa (japonica cultivar-group) chromosome 2 Ctg005618, whole
genome shotgun sequence
Length = 12800
Score = 60.0 bits (30), Expect = 2e-006
Identities = 42/46 (91%)
Strand = Plus / Plus
Query: 158 tgccccgacaagtgcggcaacataagcatcccctaccctttcggca 203
||||||||||||||||| |||| |||||||||||||| |||||||
Sbjct: 7007 tgccccgacaagtgcgggaacaccagcatcccctacccattcggca 7052
>ref|XM_468303.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 2310
Score = 60.0 bits (30), Expect = 2e-006
Identities = 42/46 (91%)
Strand = Plus / Plus
Query: 158 tgccccgacaagtgcggcaacataagcatcccctaccctttcggca 203
||||||||||||||||| ||||| |||||| ||||||| |||||||
Sbjct: 106 tgccccgacaagtgcgggaacatcagcatctcctaccccttcggca 151
>ref|XM_468308.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 2196
Score = 60.0 bits (30), Expect = 2e-006
Identities = 42/46 (91%)
Strand = Plus / Plus
Query: 158 tgccccgacaagtgcggcaacataagcatcccctaccctttcggca 203
||||||||||||||||| |||| |||||||||||||| |||||||
Sbjct: 100 tgccccgacaagtgcgggaacaccagcatcccctacccattcggca 145
>gb|CB655346.1|CB655346 OSJNEc08K11.f OSJNEc Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEc08K11 5', mRNA sequence
Length = 709
Score = 56.0 bits (28), Expect = 3e-005
Identities = 46/52 (88%)
Strand = Plus / Plus
Query: 152 ccagggtgccccgacaagtgcggcaacataagcatcccctaccctttcggca 203
||||| ||||| ||||||||||| ||||| ||||||||||||||||||||
Sbjct: 134 ccaggttgccctgacaagtgcggaaacatttccatcccctaccctttcggca 185
>dbj|AK119304.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-130-F05, full
insert sequence
Length = 2969
Score = 56.0 bits (28), Expect = 3e-005
Identities = 46/52 (88%)
Strand = Plus / Minus
Query: 152 ccagggtgccccgacaagtgcggcaacataagcatcccctaccctttcggca 203
||||| ||||| ||||||||||| ||||| ||||||||||||||||||||
Sbjct: 1586 ccaggttgccctgacaagtgcggaaacatttccatcccctaccctttcggca 1535
>dbj|AK119448.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-133-D05, full
insert sequence
Length = 2824
Score = 56.0 bits (28), Expect = 3e-005
Identities = 46/52 (88%)
Strand = Plus / Plus
Query: 152 ccagggtgccccgacaagtgcggcaacataagcatcccctaccctttcggca 203
||||| ||||| ||||||||||| ||||| ||||||||||||||||||||
Sbjct: 461 ccaggttgccctgacaagtgcggaaacatttccatcccctaccctttcggca 512
>emb|BX000457.2|CNS08CDE Oryza sativa chromosome 12, . BAC OJ1388_B05 of library Monsanto from
chromosome 12 of cultivar Nipponbare of ssp. japonica of
Oryza sativa (rice), complete sequence
Length = 144241
Score = 56.0 bits (28), Expect = 3e-005
Identities = 46/52 (88%)
Strand = Plus / Plus
Query: 152 ccagggtgccccgacaagtgcggcaacataagcatcccctaccctttcggca 203
||||| ||||| ||||||||||| ||||| ||||||||||||||||||||
Sbjct: 18448 ccaggttgccctgacaagtgcggaaacatttccatcccctaccctttcggca 18499
>ref|NT_107152.1| Oryza sativa (japonica cultivar-group)
Length = 2853905
Score = 56.0 bits (28), Expect = 3e-005
Identities = 46/52 (88%)
Strand = Plus / Plus
Query: 152 ccagggtgccccgacaagtgcggcaacataagcatcccctaccctttcggca 203
||||| ||||| ||||||||||| ||||| ||||||||||||||||||||
Sbjct: 2299808 ccaggttgccctgacaagtgcggaaacatttccatcccctaccctttcggca 2299859
>gb|AACV01025524.1| Oryza sativa (japonica cultivar-group) chromosome 12 Ctg025524, whole
genome shotgun sequence
Length = 82845
Score = 56.0 bits (28), Expect = 3e-005
Identities = 46/52 (88%)
Strand = Plus / Plus
Query: 152 ccagggtgccccgacaagtgcggcaacataagcatcccctaccctttcggca 203
||||| ||||| ||||||||||| ||||| ||||||||||||||||||||
Sbjct: 39036 ccaggttgccctgacaagtgcggaaacatttccatcccctaccctttcggca 39087
>gb|CH401282.1| Oryza sativa (japonica cultivar-group) chromosome 12 scaffold000119 genomic
scaffold, whole genome shotgun sequence
Length = 4546750
Score = 56.0 bits (28), Expect = 3e-005
Identities = 46/52 (88%)
Strand = Plus / Plus
Query: 152 ccagggtgccccgacaagtgcggcaacataagcatcccctaccctttcggca 203
||||| ||||| ||||||||||| ||||| ||||||||||||||||||||
Sbjct: 3161513 ccaggttgccctgacaagtgcggaaacatttccatcccctaccctttcggca 3161564
>gb|CM000149.1| Oryza sativa (japonica cultivar-group) chromosome 12, whole genome shotgun
sequence
Length = 23730396
Score = 56.0 bits (28), Expect = 3e-005
Identities = 46/52 (88%)
Strand = Plus / Plus
Query: 152 ccagggtgccccgacaagtgcggcaacataagcatcccctaccctttcggca 203
||||| ||||| ||||||||||| ||||| ||||||||||||||||||||
Sbjct: 22345159 ccaggttgccctgacaagtgcggaaacatttccatcccctaccctttcggca 22345210
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
sequence
Length = 27566993
Score = 56.0 bits (28), Expect = 3e-005
Identities = 46/52 (88%)
Strand = Plus / Plus
Query: 152 ccagggtgccccgacaagtgcggcaacataagcatcccctaccctttcggca 203
||||| ||||| ||||||||||| ||||| ||||||||||||||||||||
Sbjct: 26128210 ccaggttgccctgacaagtgcggaaacatttccatcccctaccctttcggca 26128261
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
Length = 27492551
Score = 56.0 bits (28), Expect = 3e-005
Identities = 46/52 (88%)
Strand = Plus / Plus
Query: 152 ccagggtgccccgacaagtgcggcaacataagcatcccctaccctttcggca 203
||||| ||||| ||||||||||| ||||| ||||||||||||||||||||
Sbjct: 26056386 ccaggttgccctgacaagtgcggaaacatttccatcccctaccctttcggca 26056437
>gb|AC113336.2| Genomic sequence for Oryza sativa, Nipponbare strain, clone
OSJNBa0011A24, from chromosome 10, complete sequence
Length = 176832
Score = 54.0 bits (27), Expect = 1e-004
Identities = 51/59 (86%)
Strand = Plus / Minus
Query: 146 acactcccagggtgccccgacaagtgcggcaacataagcatcccctaccctttcggcac 204
||||| ||||| ||| |||||||||||||||||| ||||| |||| ||| ||||||||
Sbjct: 160515 acacttccaggctgcatcgacaagtgcggcaacatcagcatacccttcccgttcggcac 160457
>gb|AACV01020971.1| Oryza sativa (japonica cultivar-group) chromosome 10 Ctg020971, whole
genome shotgun sequence
Length = 19487
Score = 54.0 bits (27), Expect = 1e-004
Identities = 51/59 (86%)
Strand = Plus / Minus
Query: 146 acactcccagggtgccccgacaagtgcggcaacataagcatcccctaccctttcggcac 204
||||| ||||| ||| |||||||||||||||||| ||||| |||| ||| ||||||||
Sbjct: 17498 acacttccaggctgcatcgacaagtgcggcaacatcagcatacccttcccgttcggcac 17440
>ref|NM_195127.1| Oryza sativa (japonica cultivar-group) putative wall-associated
protein kinase (OSJNBa0011A24.33), mRNA
Length = 2121
Score = 54.0 bits (27), Expect = 1e-004
Identities = 51/59 (86%)
Strand = Plus / Plus
Query: 146 acactcccagggtgccccgacaagtgcggcaacataagcatcccctaccctttcggcac 204
||||| ||||| ||| |||||||||||||||||| ||||| |||| ||| ||||||||
Sbjct: 106 acacttccaggctgcatcgacaagtgcggcaacatcagcatacccttcccgttcggcac 164
>gb|CB641176.1|CB641176 OSJNEa18C13.f OSJNEa Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEa18C13 5', mRNA sequence
Length = 596
Score = 52.0 bits (26), Expect = 4e-004
Identities = 41/46 (89%)
Strand = Plus / Plus
Query: 158 tgccccgacaagtgcggcaacataagcatcccctaccctttcggca 203
||||| ||||||||||||||| || |||||||||||| |||||||
Sbjct: 86 tgcccagacaagtgcggcaacgtatccatcccctacccgttcggca 131
>gb|CB641200.1|CB641200 OSJNEa18D21.f OSJNEa Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEa18D21 5', mRNA sequence
Length = 658
Score = 52.0 bits (26), Expect = 4e-004
Identities = 41/46 (89%)
Strand = Plus / Plus
Query: 158 tgccccgacaagtgcggcaacataagcatcccctaccctttcggca 203
||||| ||||||||||||||| || |||||||||||| |||||||
Sbjct: 86 tgcccagacaagtgcggcaacgtatccatcccctacccgttcggca 131
>dbj|AK058435.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-015-F06, full
insert sequence
Length = 1604
Score = 52.0 bits (26), Expect = 4e-004
Identities = 41/46 (89%)
Strand = Plus / Plus
Query: 158 tgccccgacaagtgcggcaacataagcatcccctaccctttcggca 203
||||| ||||||||||||||| || |||||||||||| |||||||
Sbjct: 133 tgcccagacaagtgcggcaacgtatccatcccctacccgttcggca 178
>dbj|AK119341.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-131-D09, full
insert sequence
Length = 2853
Score = 52.0 bits (26), Expect = 4e-004
Identities = 41/46 (89%)
Strand = Plus / Plus
Query: 158 tgccccgacaagtgcggcaacataagcatcccctaccctttcggca 203
|||||||||| |||||||||||| ||| | |||||||| |||||||
Sbjct: 126 tgccccgacaggtgcggcaacatcagcgttccctaccccttcggca 171
>dbj|AP005840.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
clone:OSJNBa0050F10
Length = 151986
Score = 52.0 bits (26), Expect = 4e-004
Identities = 41/46 (89%)
Strand = Plus / Plus
Query: 158 tgccccgacaagtgcggcaacataagcatcccctaccctttcggca 203
||||| |||| |||||| ||||| |||||||||||||| |||||||
Sbjct: 64971 tgccctgacaggtgcgggaacatcagcatcccctaccccttcggca 65016
>gb|AACV01008791.1| Oryza sativa (japonica cultivar-group) chromosome 4 Ctg008791, whole
genome shotgun sequence
Length = 13685
Score = 52.0 bits (26), Expect = 4e-004
Identities = 41/46 (89%)
Strand = Plus / Minus
Query: 158 tgccccgacaagtgcggcaacataagcatcccctaccctttcggca 203
||||| ||||||||||||||| || |||||||||||| |||||||
Sbjct: 1637 tgcccagacaagtgcggcaacgtatccatcccctacccgttcggca 1592
>gb|AACV01015252.1| Oryza sativa (japonica cultivar-group) chromosome 7 Ctg015252, whole
genome shotgun sequence
Length = 11515
Score = 52.0 bits (26), Expect = 4e-004
Identities = 41/46 (89%)
Strand = Plus / Minus
Query: 158 tgccccgacaagtgcggcaacataagcatcccctaccctttcggca 203
||||| |||| |||||| ||||| |||||||||||||| |||||||
Sbjct: 6165 tgccctgacaggtgcgggaacatcagcatcccctaccccttcggca 6120
>ref|XM_474920.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 1056
Score = 52.0 bits (26), Expect = 4e-004
Identities = 41/46 (89%)
Strand = Plus / Plus
Query: 158 tgccccgacaagtgcggcaacataagcatcccctaccctttcggca 203
||||| ||||||||||||||| || |||||||||||| |||||||
Sbjct: 178 tgcccagacaagtgcggcaacgtatccatcccctacccgttcggca 223
>ref|NT_107204.1| Oryza sativa (japonica cultivar-group)
Length = 592222
Score = 52.0 bits (26), Expect = 4e-004
Identities = 41/46 (89%)
Strand = Plus / Plus
Query: 158 tgccccgacaagtgcggcaacataagcatcccctaccctttcggca 203
||||| ||||||||||||||| || |||||||||||| |||||||
Sbjct: 173715 tgcccagacaagtgcggcaacgtatccatcccctacccgttcggca 173760
>ref|NT_079879.2| Oryza sativa (japonica cultivar-group)
Length = 11570172
Score = 52.0 bits (26), Expect = 4e-004
Identities = 41/46 (89%)
Strand = Plus / Plus
Query: 158 tgccccgacaagtgcggcaacataagcatcccctaccctttcggca 203
||||| |||| |||||| ||||| |||||||||||||| |||||||
Sbjct: 3676692 tgccctgacaggtgcgggaacatcagcatcccctaccccttcggca 3676737
>gb|CH401220.1| Oryza sativa (japonica cultivar-group) chromosome 7 scaffold000057
genomic scaffold, whole genome shotgun sequence
Length = 3236776
Score = 52.0 bits (26), Expect = 4e-004
Identities = 41/46 (89%)
Strand = Plus / Plus
Query: 158 tgccccgacaagtgcggcaacataagcatcccctaccctttcggca 203
||||| |||| |||||| ||||| |||||||||||||| |||||||
Sbjct: 783982 tgccctgacaggtgcgggaacatcagcatcccctaccccttcggca 784027
>gb|CH401185.1| Oryza sativa (japonica cultivar-group) chromosome 4 scaffold000022 genomic
scaffold, whole genome shotgun sequence
Length = 1402826
Score = 52.0 bits (26), Expect = 4e-004
Identities = 41/46 (89%)
Strand = Plus / Plus
Query: 158 tgccccgacaagtgcggcaacataagcatcccctaccctttcggca 203
||||| ||||||||||||||| || |||||||||||| |||||||
Sbjct: 1032962 tgcccagacaagtgcggcaacgtatccatcccctacccgttcggca 1033007
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,033,733
Number of Sequences: 438736
Number of extensions: 1033733
Number of successful extensions: 7562
Number of sequences better than 0.5: 79
Number of HSP's better than 0.5 without gapping: 81
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 7088
Number of HSP's gapped (non-prelim): 459
length of query: 668
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 647
effective length of database: 2,791,206,460
effective search space: 1805910579620
effective search space used: 1805910579620
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)