BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QBTB.060L08F020610.3.1
(677 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|AK064838.1| Oryza sativa (japonica cultivar-group) cDNA... 373 e-101
ref|XM_479599.1| Oryza sativa (japonica cultivar-group), mRNA 365 2e-098
gb|CB676812.1|CB676812 OSJNEe13E16.f OSJNEe Oryza sativa (j... 204 4e-050
gb|AU032437.1|AU032437 AU032437 Rice green shoot Oryza sati... 159 2e-036
dbj|AP003818.2| Oryza sativa (japonica cultivar-group) geno... 141 6e-031
dbj|AP003813.4| Oryza sativa (japonica cultivar-group) geno... 141 6e-031
gb|AACV01017045.1| Oryza sativa (japonica cultivar-group) c... 141 6e-031
ref|NT_079899.2| Oryza sativa (japonica cultivar-group) 141 6e-031
gb|CH401226.1| Oryza sativa (japonica cultivar-group) chrom... 141 6e-031
gb|CM000144.1| Oryza sativa (japonica cultivar-group) chrom... 141 6e-031
dbj|AP008213.1| Oryza sativa (japonica cultivar-group) geno... 141 6e-031
ref|XM_471515.1| Oryza sativa (japonica cultivar-group), p... 103 1e-019
gb|AC119748.1| Genomic sequence for Oryza sativa, Nipponbar... 96 3e-017
gb|AACV01006501.1| Oryza sativa (japonica cultivar-group) c... 96 3e-017
ref|NT_107192.1| Oryza sativa (japonica cultivar-group) 96 3e-017
gb|CH401173.1| Oryza sativa (japonica cultivar-group) chrom... 96 3e-017
gb|CM000140.1| Oryza sativa (japonica cultivar-group) chrom... 96 3e-017
dbj|AP008209.1| Oryza sativa (japonica cultivar-group) geno... 96 3e-017
gb|DP000009.1| Oryza sativa (japonica cultivar-group) chrom... 96 3e-017
dbj|AK102526.1| Oryza sativa (japonica cultivar-group) cDNA... 86 3e-014
dbj|AG024487.1| Oryza sativa (japonica cultivar-group) DNA,... 76 3e-011
gb|AACV01009093.1| Oryza sativa (japonica cultivar-group) c... 76 3e-011
ref|NT_079855.2| Oryza sativa (japonica cultivar-group) 76 3e-011
gb|CH401189.1| Oryza sativa (japonica cultivar-group) chrom... 76 3e-011
gb|CM000141.1| Oryza sativa (japonica cultivar-group) chrom... 76 3e-011
emb|AL663008.3|OSJN00209 Oryza sativa genomic DNA, chromoso... 76 3e-011
dbj|AP008210.1| Oryza sativa (japonica cultivar-group) geno... 76 3e-011
dbj|AG212381.1| Oryza sativa (japonica cultivar-group) DNA,... 68 7e-009
gb|CF280793.1|CF280793 14ETL--07-J17.b1 Rice etiolated leaf... 66 3e-008
gb|CB636965.1|CB636965 OSJNEa03A01.f OSJNEa Oryza sativa (j... 64 1e-007
gb|CB640067.1|CB640067 OSJNEa13C06.f OSJNEa Oryza sativa (j... 64 1e-007
gb|CB663306.1|CB663306 OSJNEd08B16.f OSJNEd Oryza sativa (j... 64 1e-007
gb|CB670939.1|CB670939 OSJNEe04E10.f OSJNEe Oryza sativa (j... 64 1e-007
gb|CB674068.1|CB674068 OSJNEe08P02.f OSJNEe Oryza sativa (j... 64 1e-007
gb|CF307181.1|CF307181 HDA1--05-P15.g1 OsHDAC1-overexpressi... 64 1e-007
dbj|AK072576.1| Oryza sativa (japonica cultivar-group) cDNA... 64 1e-007
dbj|AK062739.1| Oryza sativa (japonica cultivar-group) cDNA... 62 4e-007
gb|CB637692.1|CB637692 OSJNEa04L18.f OSJNEa Oryza sativa (j... 60 2e-006
gb|CB637202.1|CB637202 OSJNEa03H23.f OSJNEa Oryza sativa (j... 56 3e-005
gb|CB639189.1|CB639189 OSJNEa08L04.f OSJNEa Oryza sativa (j... 56 3e-005
gb|CB640184.1|CB640184 OSJNEa13K04.f OSJNEa Oryza sativa (j... 56 3e-005
gb|CB643140.1|CB643140 OSJNEb03K21.f OSJNEb Oryza sativa (j... 56 3e-005
gb|CB661901.1|CB661901 OSJNEd05F11.f OSJNEd Oryza sativa (j... 56 3e-005
gb|CB669691.1|CB669691 OSJNEe02F24.f OSJNEe Oryza sativa (j... 56 3e-005
gb|CB671149.1|CB671149 OSJNEe04J07.f OSJNEe Oryza sativa (j... 56 3e-005
gb|CB673444.1|CB673444 OSJNEe07P13.f OSJNEe Oryza sativa (j... 56 3e-005
gb|CB676487.1|CB676487 OSJNEe12M09.f OSJNEe Oryza sativa (j... 56 3e-005
dbj|AK065240.1| Oryza sativa (japonica cultivar-group) cDNA... 56 3e-005
emb|BX000507.2|CNS08CDX Oryza sativa chromosome 12, . BAC O... 56 3e-005
ref|NT_107145.1| Oryza sativa (japonica cultivar-group) 56 3e-005
gb|AACV01023904.1| Oryza sativa (japonica cultivar-group) c... 56 3e-005
gb|CH401272.1| Oryza sativa (japonica cultivar-group) chrom... 56 3e-005
gb|CM000149.1| Oryza sativa (japonica cultivar-group) chrom... 56 3e-005
dbj|AP008218.1| Oryza sativa (japonica cultivar-group) geno... 56 3e-005
gb|DP000011.1| Oryza sativa (japonica cultivar-group) chrom... 56 3e-005
dbj|AG023178.1| Oryza sativa (japonica cultivar-group) DNA,... 52 4e-004
gb|CB637568.1|CB637568 OSJNEa04G24.f OSJNEa Oryza sativa (j... 52 4e-004
gb|CB651548.1|CB651548 OSJNEb16I21.f OSJNEb Oryza sativa (j... 52 4e-004
gb|AC123516.2| Oryza sativa (japonica cultivar-group) chrom... 52 4e-004
gb|AC138454.2| Oryza sativa (japonica cultivar-group) chrom... 52 4e-004
ref|NT_107123.1| Oryza sativa (japonica cultivar-group) 52 4e-004
gb|AACV01022286.1| Oryza sativa (japonica cultivar-group) c... 52 4e-004
gb|CH401257.1| Oryza sativa (japonica cultivar-group) chrom... 52 4e-004
gb|CM000148.1| Oryza sativa (japonica cultivar-group) chrom... 52 4e-004
dbj|AP008217.1| Oryza sativa (japonica cultivar-group) geno... 52 4e-004
gb|DP000010.1| Oryza sativa (japonica cultivar-group) chrom... 52 4e-004
gb|CB637776.1|CB637776 OSJNEa04P09.f OSJNEa Oryza sativa (j... 48 0.006
gb|CB678077.1|CB678077 OSJNEe15K07.f OSJNEe Oryza sativa (j... 48 0.006
gb|D25136.1|D25136 RICR3282A Rice root Oryza sativa (japoni... 48 0.006
gb|AACV01023900.1| Oryza sativa (japonica cultivar-group) c... 44 0.097
>dbj|AK064838.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000F23, full
insert sequence
Length = 2574
Score = 373 bits (188), Expect = e-101
Identities = 420/497 (84%), Gaps = 2/497 (0%)
Strand = Plus / Plus
Query: 148 gatgcctcgccgcagaacgctaggaagatccctgataagatgtttggcatctttttcgag 207
||||||||||||||||| || ||||||||||||||||||||||| || || |||||||||
Sbjct: 145 gatgcctcgccgcagaatgcaaggaagatccctgataagatgttcggtatatttttcgag 204
Query: 208 gagatcaaccatgctggagctggtgggttgtgggcagagcttgtaagcaacagaggattt 267
||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| |||
Sbjct: 205 gagatcaaccatgctggggctggtgggttgtgggcagagcttgtaagtaacagaggtttt 264
Query: 268 gaggctggtgggcctaatacaccttcgaatattgatccgtggctgatcattggggatgaa 327
||||||||||| |||||||||||||| || ||||| || |||||||| |||||| | |||
Sbjct: 265 gaggctggtggacctaatacaccttcaaacattgacccatggctgataattgggaacgaa 324
Query: 328 tcaagtatcattgttggaactgatcggacatcatgttttgaacgtaacccagttgcactt 387
||||||||||||||||| |||||| ||||||| |||||||| || || || ||||||
Sbjct: 325 tcaagtatcattgttgggactgataggacatcctgttttgagaaaaatccggtggcactt 384
Query: 388 cggatggaagttctttgtggttctnnnnnnnctaatgcctgtccatcgggaggtgttggg 447
||||||||||||||||||| |||| | ||| ||| || || |||||||| ||
Sbjct: 385 cggatggaagttctttgtgattctaaaggaaccaataactgcccttctggaggtgtagga 444
Query: 448 gtctataatcctggctactggggcatgaacattgaaaaggggaaggtttataaggtgagc 507
||||| |||||||| || ||||||||||| ||||||| ||| ||||||||||||| ||
Sbjct: 445 gtctacaatcctggttattggggcatgaatattgaaagaaggagggtttataaggtgggc 504
Query: 508 ctgcatgttaggtcatcagatgcactgtccttgactgcttcccttgacaagctccgatgg 567
||||| |||| || ||||||||| | ||||| |||| || |||||||||||||||||||
Sbjct: 505 ctgcacattagatcttcagatgcagtatccttaactg-tttccttgacaagctccgatgg 563
Query: 568 gctacaaaaagctcgctgctcataccatcacaggtagcaagaaaacctttgcaaaatgga 627
|| || ||| || || |||| ||||| || | |||||||||| ||||| |||||||
Sbjct: 564 tctgcagaaa-ctggcctctcacaccataacggctagcaagaaacagtttgctaaatgga 622
Query: 628 caaaggtagaatttcat 644
||||| |||| ||||||
Sbjct: 623 caaagatagagtttcat 639
>ref|XM_479599.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 1995
Score = 365 bits (184), Expect = 2e-098
Identities = 419/497 (84%), Gaps = 2/497 (0%)
Strand = Plus / Plus
Query: 148 gatgcctcgccgcagaacgctaggaagatccctgataagatgtttggcatctttttcgag 207
||||||||||||||||| || ||||||||||||||||||||||| || || |||||||||
Sbjct: 118 gatgcctcgccgcagaatgcaaggaagatccctgataagatgttcggtatatttttcgag 177
Query: 208 gagatcaaccatgctggagctggtgggttgtgggcagagcttgtaagcaacagaggattt 267
||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| |||
Sbjct: 178 gagatcaaccatgctggggctggtgggttgtgggcagagcttgtaagtaacagaggtttt 237
Query: 268 gaggctggtgggcctaatacaccttcgaatattgatccgtggctgatcattggggatgaa 327
||||||||||| |||||||||||||| || ||||| || |||||||| |||||| | |||
Sbjct: 238 gaggctggtggacctaatacaccttcaaacattgacccatggctgataattgggaacgaa 297
Query: 328 tcaagtatcattgttggaactgatcggacatcatgttttgaacgtaacccagttgcactt 387
||||||||||||||||| |||||| ||||||| |||||||| || || || ||||||
Sbjct: 298 tcaagtatcattgttgggactgataggacatcctgttttgagaaaaatccggtggcactt 357
Query: 388 cggatggaagttctttgtggttctnnnnnnnctaatgcctgtccatcgggaggtgttggg 447
||||||||||||||||||| |||| | ||| ||| || || |||||||| ||
Sbjct: 358 cggatggaagttctttgtgattctaaaggaaccaataactgcccttctggaggtgtagga 417
Query: 448 gtctataatcctggctactggggcatgaacattgaaaaggggaaggtttataaggtgagc 507
||||| |||||||| || ||||||||||| ||||||| | | ||||||||||||| ||
Sbjct: 418 gtctacaatcctggttattggggcatgaatattgaaagaagaagggtttataaggtgggc 477
Query: 508 ctgcatgttaggtcatcagatgcactgtccttgactgcttcccttgacaagctccgatgg 567
||||| |||| || ||||||||| | ||||| |||| || |||||||||||||||||||
Sbjct: 478 ctgcacattagatcttcagatgcagtatccttaactg-tttccttgacaagctccgatgg 536
Query: 568 gctacaaaaagctcgctgctcataccatcacaggtagcaagaaaacctttgcaaaatgga 627
|| || ||| || || |||| ||||| || | |||||||||| ||||| |||||||
Sbjct: 537 tctgcagaaa-ctggcctctcacaccataacggctagcaagaaacagtttgctaaatgga 595
Query: 628 caaaggtagaatttcat 644
||||| |||| ||||||
Sbjct: 596 caaagatagagtttcat 612
>gb|CB676812.1|CB676812 OSJNEe13E16.f OSJNEe Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEe13E16 5', mRNA sequence
Length = 672
Score = 204 bits (103), Expect = 4e-050
Identities = 258/312 (82%)
Strand = Plus / Plus
Query: 174 gatccctgataagatgtttggcatctttttcgaggagatcaaccatgctggagctggtgg 233
||||||||| || ||||| ||||||||||| |||||| |||||||||| || ||||||||
Sbjct: 199 gatccctgacaaaatgttcggcatcttttttgaggagctcaaccatgccggggctggtgg 258
Query: 234 gttgtgggcagagcttgtaagcaacagaggatttgaggctggtgggcctaatacaccttc 293
|||||||||||||||||||||||||||| || || |||||||| |||||| |||||
Sbjct: 259 actgtgggcagagcttgtaagcaacagaggtttcgaagctggtggcattaatactccttc 318
Query: 294 gaatattgatccgtggctgatcattggggatgaatcaagtatcattgttggaactgatcg 353
|||||||| || ||| |||| ||||| ||||| |||| ||| ||||| | ||| ||| |
Sbjct: 319 aaatattgacccatggttgataattggagatgactcaaatataattgtggaaacagatag 378
Query: 354 gacatcatgttttgaacgtaacccagttgcacttcggatggaagttctttgtggttctnn 413
| |||||||||||| |||||||| |||||||||| |||||||| || ||||| ||
Sbjct: 379 gtcatcatgttttgccagtaacccaattgcacttcgcatggaagtactctgtggagctac 438
Query: 414 nnnnnctaatgcctgtccatcgggaggtgttggggtctataatcctggctactggggcat 473
||||||| || || || |||||||||| ||||||||||||| |||||||||||
Sbjct: 439 cggaactaatgcttgcccttcaagaggtgttggtatctataatcctggttactggggcat 498
Query: 474 gaacattgaaaa 485
||||||||||||
Sbjct: 499 gaacattgaaaa 510
>gb|AU032437.1|AU032437 AU032437 Rice green shoot Oryza sativa (japonica cultivar-group)
cDNA clone S10023_1A, mRNA sequence
Length = 355
Score = 159 bits (80), Expect = 2e-036
Identities = 235/288 (81%), Gaps = 1/288 (0%)
Strand = Plus / Plus
Query: 280 cctaatacaccttcgaatattgatccgtggctgatcattggggatgaatcaagtatcatt 339
|||||||||||||| || ||||| || |||||||| |||||| | |||||||||||||||
Sbjct: 5 cctaatacaccttcaaacattgacccatggctgataattgggaacgaatcaagtatcatt 64
Query: 340 gttggaactgatcggacatcatgttttgaacgtaacccagttgcacttcggatggaagtt 399
||||| |||||| ||||||| |||||||| || || || |||||| |||||||||||
Sbjct: 65 gttgggactgataggacatcctgttttgagaaaaatccggtggcacttnggatggaagtt 124
Query: 400 ctttgtggttctnnnnnnnctaatgcctgtccatcgggaggtgttggggtctataatcct 459
||||||| |||| | ||| ||| || || |||||||| || ||||| ||||||
Sbjct: 125 ctttgtgattctaaaggaaccaataactgcccttctggaggtgtaggagtctacaatcct 184
Query: 460 ggctactggggcatgaacattgaaaaggggaaggtttataaggtgagcctgcatgttagg 519
|| || ||||||||||| ||||||| | | ||||||||||||| ||||||| ||||
Sbjct: 185 ggttattggggcatgaatattgaaagaagaagggtttataaggtgggcctgcacattaga 244
Query: 520 tcatcagatgcactgtccttgactgcttcccttgacaagctccgatgg 567
|| ||||||||| | ||||| |||| || |||||||||||||||||||
Sbjct: 245 tcttcagatgcagtatccttaactg-tttccttgacaagctccgatgg 291
>dbj|AP003818.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
clone:OJ1200_C08
Length = 106214
Score = 141 bits (71), Expect = 6e-031
Identities = 128/147 (87%)
Strand = Plus / Plus
Query: 265 tttgaggctggtgggcctaatacaccttcgaatattgatccgtggctgatcattggggat 324
|||||||||||||| |||||||||||||| || ||||| || |||||||| |||||| |
Sbjct: 78796 tttgaggctggtggacctaatacaccttcaaacattgacccatggctgataattgggaac 78855
Query: 325 gaatcaagtatcattgttggaactgatcggacatcatgttttgaacgtaacccagttgca 384
|||||||||||||||||||| |||||| ||||||| |||||||| || || || |||
Sbjct: 78856 gaatcaagtatcattgttgggactgataggacatcctgttttgagaaaaatccggtggca 78915
Query: 385 cttcggatggaagttctttgtggttct 411
|||||||||||||||||||||| ||||
Sbjct: 78916 cttcggatggaagttctttgtgattct 78942
Score = 99.6 bits (50), Expect = 2e-018
Identities = 56/58 (96%)
Strand = Plus / Plus
Query: 206 aggagatcaaccatgctggagctggtgggttgtgggcagagcttgtaagcaacagagg 263
||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct: 78604 aggagatcaaccatgctggggctggtgggttgtgggcagagcttgtaagtaacagagg 78661
Score = 81.8 bits (41), Expect = 4e-013
Identities = 56/61 (91%)
Strand = Plus / Plus
Query: 148 gatgcctcgccgcagaacgctaggaagatccctgataagatgtttggcatctttttcgag 207
||||||||||||||||| || ||||||||||||||||||||||| || || |||||||||
Sbjct: 78192 gatgcctcgccgcagaatgcaaggaagatccctgataagatgttcggtatatttttcgag 78251
Query: 208 g 208
|
Sbjct: 78252 g 78252
Score = 63.9 bits (32), Expect = 1e-007
Identities = 66/76 (86%), Gaps = 1/76 (1%)
Strand = Plus / Plus
Query: 492 ggtttataaggtgagcctgcatgttaggtcatcagatgcactgtccttgactgcttccct 551
||||||||||||| ||||||| |||| || ||||||||| | ||||| |||| || |||
Sbjct: 79175 ggtttataaggtgggcctgcacattagatcttcagatgcagtatccttaactg-tttcct 79233
Query: 552 tgacaagctccgatgg 567
||||||||||||||||
Sbjct: 79234 tgacaagctccgatgg 79249
>dbj|AP003813.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
clone:OJ1150_E04
Length = 130973
Score = 141 bits (71), Expect = 6e-031
Identities = 128/147 (87%)
Strand = Plus / Plus
Query: 265 tttgaggctggtgggcctaatacaccttcgaatattgatccgtggctgatcattggggat 324
|||||||||||||| |||||||||||||| || ||||| || |||||||| |||||| |
Sbjct: 65957 tttgaggctggtggacctaatacaccttcaaacattgacccatggctgataattgggaac 66016
Query: 325 gaatcaagtatcattgttggaactgatcggacatcatgttttgaacgtaacccagttgca 384
|||||||||||||||||||| |||||| ||||||| |||||||| || || || |||
Sbjct: 66017 gaatcaagtatcattgttgggactgataggacatcctgttttgagaaaaatccggtggca 66076
Query: 385 cttcggatggaagttctttgtggttct 411
|||||||||||||||||||||| ||||
Sbjct: 66077 cttcggatggaagttctttgtgattct 66103
Score = 99.6 bits (50), Expect = 2e-018
Identities = 56/58 (96%)
Strand = Plus / Plus
Query: 206 aggagatcaaccatgctggagctggtgggttgtgggcagagcttgtaagcaacagagg 263
||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct: 65765 aggagatcaaccatgctggggctggtgggttgtgggcagagcttgtaagtaacagagg 65822
Score = 81.8 bits (41), Expect = 4e-013
Identities = 56/61 (91%)
Strand = Plus / Plus
Query: 148 gatgcctcgccgcagaacgctaggaagatccctgataagatgtttggcatctttttcgag 207
||||||||||||||||| || ||||||||||||||||||||||| || || |||||||||
Sbjct: 65353 gatgcctcgccgcagaatgcaaggaagatccctgataagatgttcggtatatttttcgag 65412
Query: 208 g 208
|
Sbjct: 65413 g 65413
Score = 63.9 bits (32), Expect = 1e-007
Identities = 66/76 (86%), Gaps = 1/76 (1%)
Strand = Plus / Plus
Query: 492 ggtttataaggtgagcctgcatgttaggtcatcagatgcactgtccttgactgcttccct 551
||||||||||||| ||||||| |||| || ||||||||| | ||||| |||| || |||
Sbjct: 66336 ggtttataaggtgggcctgcacattagatcttcagatgcagtatccttaactg-tttcct 66394
Query: 552 tgacaagctccgatgg 567
||||||||||||||||
Sbjct: 66395 tgacaagctccgatgg 66410
>gb|AACV01017045.1| Oryza sativa (japonica cultivar-group) chromosome 7 Ctg017045, whole
genome shotgun sequence
Length = 18063
Score = 141 bits (71), Expect = 6e-031
Identities = 128/147 (87%)
Strand = Plus / Minus
Query: 265 tttgaggctggtgggcctaatacaccttcgaatattgatccgtggctgatcattggggat 324
|||||||||||||| |||||||||||||| || ||||| || |||||||| |||||| |
Sbjct: 6114 tttgaggctggtggacctaatacaccttcaaacattgacccatggctgataattgggaac 6055
Query: 325 gaatcaagtatcattgttggaactgatcggacatcatgttttgaacgtaacccagttgca 384
|||||||||||||||||||| |||||| ||||||| |||||||| || || || |||
Sbjct: 6054 gaatcaagtatcattgttgggactgataggacatcctgttttgagaaaaatccggtggca 5995
Query: 385 cttcggatggaagttctttgtggttct 411
|||||||||||||||||||||| ||||
Sbjct: 5994 cttcggatggaagttctttgtgattct 5968
Score = 99.6 bits (50), Expect = 2e-018
Identities = 56/58 (96%)
Strand = Plus / Minus
Query: 206 aggagatcaaccatgctggagctggtgggttgtgggcagagcttgtaagcaacagagg 263
||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct: 6306 aggagatcaaccatgctggggctggtgggttgtgggcagagcttgtaagtaacagagg 6249
Score = 81.8 bits (41), Expect = 4e-013
Identities = 56/61 (91%)
Strand = Plus / Minus
Query: 148 gatgcctcgccgcagaacgctaggaagatccctgataagatgtttggcatctttttcgag 207
||||||||||||||||| || ||||||||||||||||||||||| || || |||||||||
Sbjct: 6718 gatgcctcgccgcagaatgcaaggaagatccctgataagatgttcggtatatttttcgag 6659
Query: 208 g 208
|
Sbjct: 6658 g 6658
Score = 63.9 bits (32), Expect = 1e-007
Identities = 66/76 (86%), Gaps = 1/76 (1%)
Strand = Plus / Minus
Query: 492 ggtttataaggtgagcctgcatgttaggtcatcagatgcactgtccttgactgcttccct 551
||||||||||||| ||||||| |||| || ||||||||| | ||||| |||| || |||
Sbjct: 5735 ggtttataaggtgggcctgcacattagatcttcagatgcagtatccttaactg-tttcct 5677
Query: 552 tgacaagctccgatgg 567
||||||||||||||||
Sbjct: 5676 tgacaagctccgatgg 5661
>ref|NT_079899.2| Oryza sativa (japonica cultivar-group)
Length = 17249721
Score = 141 bits (71), Expect = 6e-031
Identities = 128/147 (87%)
Strand = Plus / Plus
Query: 265 tttgaggctggtgggcctaatacaccttcgaatattgatccgtggctgatcattggggat 324
|||||||||||||| |||||||||||||| || ||||| || |||||||| |||||| |
Sbjct: 16743844 tttgaggctggtggacctaatacaccttcaaacattgacccatggctgataattgggaac 16743903
Query: 325 gaatcaagtatcattgttggaactgatcggacatcatgttttgaacgtaacccagttgca 384
|||||||||||||||||||| |||||| ||||||| |||||||| || || || |||
Sbjct: 16743904 gaatcaagtatcattgttgggactgataggacatcctgttttgagaaaaatccggtggca 16743963
Query: 385 cttcggatggaagttctttgtggttct 411
|||||||||||||||||||||| ||||
Sbjct: 16743964 cttcggatggaagttctttgtgattct 16743990
Score = 99.6 bits (50), Expect = 2e-018
Identities = 56/58 (96%)
Strand = Plus / Plus
Query: 206 aggagatcaaccatgctggagctggtgggttgtgggcagagcttgtaagcaacagagg 263
||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct: 16743652 aggagatcaaccatgctggggctggtgggttgtgggcagagcttgtaagtaacagagg 16743709
Score = 81.8 bits (41), Expect = 4e-013
Identities = 56/61 (91%)
Strand = Plus / Plus
Query: 148 gatgcctcgccgcagaacgctaggaagatccctgataagatgtttggcatctttttcgag 207
||||||||||||||||| || ||||||||||||||||||||||| || || |||||||||
Sbjct: 16743240 gatgcctcgccgcagaatgcaaggaagatccctgataagatgttcggtatatttttcgag 16743299
Query: 208 g 208
|
Sbjct: 16743300 g 16743300
Score = 63.9 bits (32), Expect = 1e-007
Identities = 66/76 (86%), Gaps = 1/76 (1%)
Strand = Plus / Plus
Query: 492 ggtttataaggtgagcctgcatgttaggtcatcagatgcactgtccttgactgcttccct 551
||||||||||||| ||||||| |||| || ||||||||| | ||||| |||| || |||
Sbjct: 16744223 ggtttataaggtgggcctgcacattagatcttcagatgcagtatccttaactg-tttcct 16744281
Query: 552 tgacaagctccgatgg 567
||||||||||||||||
Sbjct: 16744282 tgacaagctccgatgg 16744297
>gb|CH401226.1| Oryza sativa (japonica cultivar-group) chromosome 7 scaffold000063 genomic
scaffold, whole genome shotgun sequence
Length = 15204090
Score = 141 bits (71), Expect = 6e-031
Identities = 128/147 (87%)
Strand = Plus / Plus
Query: 265 tttgaggctggtgggcctaatacaccttcgaatattgatccgtggctgatcattggggat 324
|||||||||||||| |||||||||||||| || ||||| || |||||||| |||||| |
Sbjct: 14729264 tttgaggctggtggacctaatacaccttcaaacattgacccatggctgataattgggaac 14729323
Query: 325 gaatcaagtatcattgttggaactgatcggacatcatgttttgaacgtaacccagttgca 384
|||||||||||||||||||| |||||| ||||||| |||||||| || || || |||
Sbjct: 14729324 gaatcaagtatcattgttgggactgataggacatcctgttttgagaaaaatccggtggca 14729383
Query: 385 cttcggatggaagttctttgtggttct 411
|||||||||||||||||||||| ||||
Sbjct: 14729384 cttcggatggaagttctttgtgattct 14729410
Score = 99.6 bits (50), Expect = 2e-018
Identities = 56/58 (96%)
Strand = Plus / Plus
Query: 206 aggagatcaaccatgctggagctggtgggttgtgggcagagcttgtaagcaacagagg 263
||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct: 14729072 aggagatcaaccatgctggggctggtgggttgtgggcagagcttgtaagtaacagagg 14729129
Score = 81.8 bits (41), Expect = 4e-013
Identities = 56/61 (91%)
Strand = Plus / Plus
Query: 148 gatgcctcgccgcagaacgctaggaagatccctgataagatgtttggcatctttttcgag 207
||||||||||||||||| || ||||||||||||||||||||||| || || |||||||||
Sbjct: 14728660 gatgcctcgccgcagaatgcaaggaagatccctgataagatgttcggtatatttttcgag 14728719
Query: 208 g 208
|
Sbjct: 14728720 g 14728720
Score = 63.9 bits (32), Expect = 1e-007
Identities = 66/76 (86%), Gaps = 1/76 (1%)
Strand = Plus / Plus
Query: 492 ggtttataaggtgagcctgcatgttaggtcatcagatgcactgtccttgactgcttccct 551
||||||||||||| ||||||| |||| || ||||||||| | ||||| |||| || |||
Sbjct: 14729643 ggtttataaggtgggcctgcacattagatcttcagatgcagtatccttaactg-tttcct 14729701
Query: 552 tgacaagctccgatgg 567
||||||||||||||||
Sbjct: 14729702 tgacaagctccgatgg 14729717
>gb|CM000144.1| Oryza sativa (japonica cultivar-group) chromosome 7, whole genome shotgun
sequence
Length = 28626509
Score = 141 bits (71), Expect = 6e-031
Identities = 128/147 (87%)
Strand = Plus / Plus
Query: 265 tttgaggctggtgggcctaatacaccttcgaatattgatccgtggctgatcattggggat 324
|||||||||||||| |||||||||||||| || ||||| || |||||||| |||||| |
Sbjct: 28128703 tttgaggctggtggacctaatacaccttcaaacattgacccatggctgataattgggaac 28128762
Query: 325 gaatcaagtatcattgttggaactgatcggacatcatgttttgaacgtaacccagttgca 384
|||||||||||||||||||| |||||| ||||||| |||||||| || || || |||
Sbjct: 28128763 gaatcaagtatcattgttgggactgataggacatcctgttttgagaaaaatccggtggca 28128822
Query: 385 cttcggatggaagttctttgtggttct 411
|||||||||||||||||||||| ||||
Sbjct: 28128823 cttcggatggaagttctttgtgattct 28128849
Score = 99.6 bits (50), Expect = 2e-018
Identities = 56/58 (96%)
Strand = Plus / Plus
Query: 206 aggagatcaaccatgctggagctggtgggttgtgggcagagcttgtaagcaacagagg 263
||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct: 28128511 aggagatcaaccatgctggggctggtgggttgtgggcagagcttgtaagtaacagagg 28128568
Score = 81.8 bits (41), Expect = 4e-013
Identities = 56/61 (91%)
Strand = Plus / Plus
Query: 148 gatgcctcgccgcagaacgctaggaagatccctgataagatgtttggcatctttttcgag 207
||||||||||||||||| || ||||||||||||||||||||||| || || |||||||||
Sbjct: 28128099 gatgcctcgccgcagaatgcaaggaagatccctgataagatgttcggtatatttttcgag 28128158
Query: 208 g 208
|
Sbjct: 28128159 g 28128159
Score = 63.9 bits (32), Expect = 1e-007
Identities = 66/76 (86%), Gaps = 1/76 (1%)
Strand = Plus / Plus
Query: 492 ggtttataaggtgagcctgcatgttaggtcatcagatgcactgtccttgactgcttccct 551
||||||||||||| ||||||| |||| || ||||||||| | ||||| |||| || |||
Sbjct: 28129082 ggtttataaggtgggcctgcacattagatcttcagatgcagtatccttaactg-tttcct 28129140
Query: 552 tgacaagctccgatgg 567
||||||||||||||||
Sbjct: 28129141 tgacaagctccgatgg 28129156
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
sequence
Length = 29644043
Score = 141 bits (71), Expect = 6e-031
Identities = 128/147 (87%)
Strand = Plus / Plus
Query: 265 tttgaggctggtgggcctaatacaccttcgaatattgatccgtggctgatcattggggat 324
|||||||||||||| |||||||||||||| || ||||| || |||||||| |||||| |
Sbjct: 29130839 tttgaggctggtggacctaatacaccttcaaacattgacccatggctgataattgggaac 29130898
Query: 325 gaatcaagtatcattgttggaactgatcggacatcatgttttgaacgtaacccagttgca 384
|||||||||||||||||||| |||||| ||||||| |||||||| || || || |||
Sbjct: 29130899 gaatcaagtatcattgttgggactgataggacatcctgttttgagaaaaatccggtggca 29130958
Query: 385 cttcggatggaagttctttgtggttct 411
|||||||||||||||||||||| ||||
Sbjct: 29130959 cttcggatggaagttctttgtgattct 29130985
Score = 99.6 bits (50), Expect = 2e-018
Identities = 56/58 (96%)
Strand = Plus / Plus
Query: 206 aggagatcaaccatgctggagctggtgggttgtgggcagagcttgtaagcaacagagg 263
||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct: 29130647 aggagatcaaccatgctggggctggtgggttgtgggcagagcttgtaagtaacagagg 29130704
Score = 81.8 bits (41), Expect = 4e-013
Identities = 56/61 (91%)
Strand = Plus / Plus
Query: 148 gatgcctcgccgcagaacgctaggaagatccctgataagatgtttggcatctttttcgag 207
||||||||||||||||| || ||||||||||||||||||||||| || || |||||||||
Sbjct: 29130235 gatgcctcgccgcagaatgcaaggaagatccctgataagatgttcggtatatttttcgag 29130294
Query: 208 g 208
|
Sbjct: 29130295 g 29130295
Score = 63.9 bits (32), Expect = 1e-007
Identities = 66/76 (86%), Gaps = 1/76 (1%)
Strand = Plus / Plus
Query: 492 ggtttataaggtgagcctgcatgttaggtcatcagatgcactgtccttgactgcttccct 551
||||||||||||| ||||||| |||| || ||||||||| | ||||| |||| || |||
Sbjct: 29131218 ggtttataaggtgggcctgcacattagatcttcagatgcagtatccttaactg-tttcct 29131276
Query: 552 tgacaagctccgatgg 567
||||||||||||||||
Sbjct: 29131277 tgacaagctccgatgg 29131292
>ref|XM_471515.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 1965
Score = 103 bits (52), Expect = 1e-019
Identities = 118/140 (84%)
Strand = Plus / Plus
Query: 148 gatgcctcgccgcagaacgctaggaagatccctgataagatgtttggcatctttttcgag 207
|||||||| |||||| | ||| | ||||||||||| | | ||||| || |||||||||
Sbjct: 118 gatgcctcaccgcagcatgctcgaaagatccctgagacactctttgggatatttttcgag 177
Query: 208 gagatcaaccatgctggagctggtgggttgtgggcagagcttgtaagcaacagaggattt 267
|||||||||||||||||||| ||||| | |||||||||||||| ||||||||||| ||
Sbjct: 178 gagatcaaccatgctggagcaggtggaatatgggcagagcttgtcagcaacagaggtttc 237
Query: 268 gaggctggtgggcctaatac 287
|| ||||| || ||||||||
Sbjct: 238 gaagctggaggccctaatac 257
>gb|AC119748.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone
OSJNBa0042L15, from chromosome 3, complete sequence
Length = 172475
Score = 95.6 bits (48), Expect = 3e-017
Identities = 155/193 (80%)
Strand = Plus / Minus
Query: 282 taatacaccttcgaatattgatccgtggctgatcattggggatgaatcaagtatcattgt 341
|||||| ||||| |||||||| || ||| |||| ||||| ||||| |||| ||| |||||
Sbjct: 79613 taatactccttcaaatattgacccatggttgataattggagatgagtcaaatataattgt 79554
Query: 342 tggaactgatcggacatcatgttttgaacgtaacccagttgcacttcggatggaagttct 401
| ||| ||| || |||||||||||| |||||||| |||||||||| |||||||| ||
Sbjct: 79553 ggaaacagataggtcatcatgttttgccagtaacccaattgcacttcgcatggaagtact 79494
Query: 402 ttgtggttctnnnnnnnctaatgcctgtccatcgggaggtgttggggtctataatcctgg 461
||||| || ||||||| || || || ||||||||||| |||||||||||||
Sbjct: 79493 ctgtggagctaccggaactaatgcttgcccttcaggaggtgttggtatctataatcctgg 79434
Query: 462 ctactggggcatg 474
||||||||||||
Sbjct: 79433 ttactggggcatg 79421
Score = 75.8 bits (38), Expect = 3e-011
Identities = 53/58 (91%)
Strand = Plus / Minus
Query: 206 aggagatcaaccatgctggagctggtgggttgtgggcagagcttgtaagcaacagagg 263
||||| |||||||||| || |||||||| ||||||||||||||||||||||||||||
Sbjct: 80182 aggagctcaaccatgccggggctggtggactgtgggcagagcttgtaagcaacagagg 80125
>gb|AACV01006501.1| Oryza sativa (japonica cultivar-group) chromosome 3 Ctg006501, whole
genome shotgun sequence
Length = 22973
Score = 95.6 bits (48), Expect = 3e-017
Identities = 155/193 (80%)
Strand = Plus / Minus
Query: 282 taatacaccttcgaatattgatccgtggctgatcattggggatgaatcaagtatcattgt 341
|||||| ||||| |||||||| || ||| |||| ||||| ||||| |||| ||| |||||
Sbjct: 7044 taatactccttcaaatattgacccatggttgataattggagatgagtcaaatataattgt 6985
Query: 342 tggaactgatcggacatcatgttttgaacgtaacccagttgcacttcggatggaagttct 401
| ||| ||| || |||||||||||| |||||||| |||||||||| |||||||| ||
Sbjct: 6984 ggaaacagataggtcatcatgttttgccagtaacccaattgcacttcgcatggaagtact 6925
Query: 402 ttgtggttctnnnnnnnctaatgcctgtccatcgggaggtgttggggtctataatcctgg 461
||||| || ||||||| || || || ||||||||||| |||||||||||||
Sbjct: 6924 ctgtggagctaccggaactaatgcttgcccttcaggaggtgttggtatctataatcctgg 6865
Query: 462 ctactggggcatg 474
||||||||||||
Sbjct: 6864 ttactggggcatg 6852
Score = 75.8 bits (38), Expect = 3e-011
Identities = 53/58 (91%)
Strand = Plus / Minus
Query: 206 aggagatcaaccatgctggagctggtgggttgtgggcagagcttgtaagcaacagagg 263
||||| |||||||||| || |||||||| ||||||||||||||||||||||||||||
Sbjct: 7613 aggagctcaaccatgccggggctggtggactgtgggcagagcttgtaagcaacagagg 7556
>ref|NT_107192.1| Oryza sativa (japonica cultivar-group)
Length = 4781381
Score = 95.6 bits (48), Expect = 3e-017
Identities = 155/193 (80%)
Strand = Plus / Minus
Query: 282 taatacaccttcgaatattgatccgtggctgatcattggggatgaatcaagtatcattgt 341
|||||| ||||| |||||||| || ||| |||| ||||| ||||| |||| ||| |||||
Sbjct: 2871301 taatactccttcaaatattgacccatggttgataattggagatgagtcaaatataattgt 2871242
Query: 342 tggaactgatcggacatcatgttttgaacgtaacccagttgcacttcggatggaagttct 401
| ||| ||| || |||||||||||| |||||||| |||||||||| |||||||| ||
Sbjct: 2871241 ggaaacagataggtcatcatgttttgccagtaacccaattgcacttcgcatggaagtact 2871182
Query: 402 ttgtggttctnnnnnnnctaatgcctgtccatcgggaggtgttggggtctataatcctgg 461
||||| || ||||||| || || || ||||||||||| |||||||||||||
Sbjct: 2871181 ctgtggagctaccggaactaatgcttgcccttcaggaggtgttggtatctataatcctgg 2871122
Query: 462 ctactggggcatg 474
||||||||||||
Sbjct: 2871121 ttactggggcatg 2871109
Score = 75.8 bits (38), Expect = 3e-011
Identities = 53/58 (91%)
Strand = Plus / Minus
Query: 206 aggagatcaaccatgctggagctggtgggttgtgggcagagcttgtaagcaacagagg 263
||||| |||||||||| || |||||||| ||||||||||||||||||||||||||||
Sbjct: 2871870 aggagctcaaccatgccggggctggtggactgtgggcagagcttgtaagcaacagagg 2871813
>gb|CH401173.1| Oryza sativa (japonica cultivar-group) chromosome 3 scaffold000010 genomic
scaffold, whole genome shotgun sequence
Length = 13858245
Score = 95.6 bits (48), Expect = 3e-017
Identities = 155/193 (80%)
Strand = Plus / Minus
Query: 282 taatacaccttcgaatattgatccgtggctgatcattggggatgaatcaagtatcattgt 341
|||||| ||||| |||||||| || ||| |||| ||||| ||||| |||| ||| |||||
Sbjct: 11652268 taatactccttcaaatattgacccatggttgataattggagatgagtcaaatataattgt 11652209
Query: 342 tggaactgatcggacatcatgttttgaacgtaacccagttgcacttcggatggaagttct 401
| ||| ||| || |||||||||||| |||||||| |||||||||| |||||||| ||
Sbjct: 11652208 ggaaacagataggtcatcatgttttgccagtaacccaattgcacttcgcatggaagtact 11652149
Query: 402 ttgtggttctnnnnnnnctaatgcctgtccatcgggaggtgttggggtctataatcctgg 461
||||| || ||||||| || || || ||||||||||| |||||||||||||
Sbjct: 11652148 ctgtggagctaccggaactaatgcttgcccttcaggaggtgttggtatctataatcctgg 11652089
Query: 462 ctactggggcatg 474
||||||||||||
Sbjct: 11652088 ttactggggcatg 11652076
Score = 75.8 bits (38), Expect = 3e-011
Identities = 53/58 (91%)
Strand = Plus / Minus
Query: 206 aggagatcaaccatgctggagctggtgggttgtgggcagagcttgtaagcaacagagg 263
||||| |||||||||| || |||||||| ||||||||||||||||||||||||||||
Sbjct: 11652837 aggagctcaaccatgccggggctggtggactgtgggcagagcttgtaagcaacagagg 11652780
>gb|CM000140.1| Oryza sativa (japonica cultivar-group) chromosome 3, whole genome shotgun
sequence
Length = 37803064
Score = 95.6 bits (48), Expect = 3e-017
Identities = 155/193 (80%)
Strand = Plus / Minus
Query: 282 taatacaccttcgaatattgatccgtggctgatcattggggatgaatcaagtatcattgt 341
|||||| ||||| |||||||| || ||| |||| ||||| ||||| |||| ||| |||||
Sbjct: 11844630 taatactccttcaaatattgacccatggttgataattggagatgagtcaaatataattgt 11844571
Query: 342 tggaactgatcggacatcatgttttgaacgtaacccagttgcacttcggatggaagttct 401
| ||| ||| || |||||||||||| |||||||| |||||||||| |||||||| ||
Sbjct: 11844570 ggaaacagataggtcatcatgttttgccagtaacccaattgcacttcgcatggaagtact 11844511
Query: 402 ttgtggttctnnnnnnnctaatgcctgtccatcgggaggtgttggggtctataatcctgg 461
||||| || ||||||| || || || ||||||||||| |||||||||||||
Sbjct: 11844510 ctgtggagctaccggaactaatgcttgcccttcaggaggtgttggtatctataatcctgg 11844451
Query: 462 ctactggggcatg 474
||||||||||||
Sbjct: 11844450 ttactggggcatg 11844438
Score = 75.8 bits (38), Expect = 3e-011
Identities = 53/58 (91%)
Strand = Plus / Minus
Query: 206 aggagatcaaccatgctggagctggtgggttgtgggcagagcttgtaagcaacagagg 263
||||| |||||||||| || |||||||| ||||||||||||||||||||||||||||
Sbjct: 11845199 aggagctcaaccatgccggggctggtggactgtgggcagagcttgtaagcaacagagg 11845142
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
sequence
Length = 36192742
Score = 95.6 bits (48), Expect = 3e-017
Identities = 155/193 (80%)
Strand = Plus / Minus
Query: 282 taatacaccttcgaatattgatccgtggctgatcattggggatgaatcaagtatcattgt 341
|||||| ||||| |||||||| || ||| |||| ||||| ||||| |||| ||| |||||
Sbjct: 11525804 taatactccttcaaatattgacccatggttgataattggagatgagtcaaatataattgt 11525745
Query: 342 tggaactgatcggacatcatgttttgaacgtaacccagttgcacttcggatggaagttct 401
| ||| ||| || |||||||||||| |||||||| |||||||||| |||||||| ||
Sbjct: 11525744 ggaaacagataggtcatcatgttttgccagtaacccaattgcacttcgcatggaagtact 11525685
Query: 402 ttgtggttctnnnnnnnctaatgcctgtccatcgggaggtgttggggtctataatcctgg 461
||||| || ||||||| || || || ||||||||||| |||||||||||||
Sbjct: 11525684 ctgtggagctaccggaactaatgcttgcccttcaggaggtgttggtatctataatcctgg 11525625
Query: 462 ctactggggcatg 474
||||||||||||
Sbjct: 11525624 ttactggggcatg 11525612
Score = 75.8 bits (38), Expect = 3e-011
Identities = 53/58 (91%)
Strand = Plus / Minus
Query: 206 aggagatcaaccatgctggagctggtgggttgtgggcagagcttgtaagcaacagagg 263
||||| |||||||||| || |||||||| ||||||||||||||||||||||||||||
Sbjct: 11526373 aggagctcaaccatgccggggctggtggactgtgggcagagcttgtaagcaacagagg 11526316
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
Length = 36102668
Score = 95.6 bits (48), Expect = 3e-017
Identities = 155/193 (80%)
Strand = Plus / Minus
Query: 282 taatacaccttcgaatattgatccgtggctgatcattggggatgaatcaagtatcattgt 341
|||||| ||||| |||||||| || ||| |||| ||||| ||||| |||| ||| |||||
Sbjct: 11529041 taatactccttcaaatattgacccatggttgataattggagatgagtcaaatataattgt 11528982
Query: 342 tggaactgatcggacatcatgttttgaacgtaacccagttgcacttcggatggaagttct 401
| ||| ||| || |||||||||||| |||||||| |||||||||| |||||||| ||
Sbjct: 11528981 ggaaacagataggtcatcatgttttgccagtaacccaattgcacttcgcatggaagtact 11528922
Query: 402 ttgtggttctnnnnnnnctaatgcctgtccatcgggaggtgttggggtctataatcctgg 461
||||| || ||||||| || || || ||||||||||| |||||||||||||
Sbjct: 11528921 ctgtggagctaccggaactaatgcttgcccttcaggaggtgttggtatctataatcctgg 11528862
Query: 462 ctactggggcatg 474
||||||||||||
Sbjct: 11528861 ttactggggcatg 11528849
Score = 75.8 bits (38), Expect = 3e-011
Identities = 53/58 (91%)
Strand = Plus / Minus
Query: 206 aggagatcaaccatgctggagctggtgggttgtgggcagagcttgtaagcaacagagg 263
||||| |||||||||| || |||||||| ||||||||||||||||||||||||||||
Sbjct: 11529610 aggagctcaaccatgccggggctggtggactgtgggcagagcttgtaagcaacagagg 11529553
>dbj|AK102526.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033096C04, full
insert sequence
Length = 2409
Score = 85.7 bits (43), Expect = 3e-014
Identities = 109/131 (83%)
Strand = Plus / Plus
Query: 199 tttttcgaggagatcaaccatgctggagctggtgggttgtgggcagagcttgtaagcaac 258
||||||||||| || |||||||| |||||||||||| | ||||| |||||||| || |||
Sbjct: 381 tttttcgaggaaattaaccatgccggagctggtgggatatgggcggagcttgtcagtaac 440
Query: 259 agaggatttgaggctggtgggcctaatacaccttcgaatattgatccgtggctgatcatt 318
||||| ||||| ||||| ||||| | || ||||| |||||||| || ||| ||||||
Sbjct: 441 agagggtttgaagctggagggccccacaccccttcaaatattgacccatggtctatcatt 500
Query: 319 ggggatgaatc 329
|| ||||||||
Sbjct: 501 ggagatgaatc 511
>dbj|AG024487.1| Oryza sativa (japonica cultivar-group) DNA, clone:ND4508_0_401_1A,
3' flanking sequence of Tos17 insertion in rice strain
ND4508, genomic survey sequence
Length = 527
Score = 75.8 bits (38), Expect = 3e-011
Identities = 53/58 (91%)
Strand = Plus / Plus
Query: 206 aggagatcaaccatgctggagctggtgggttgtgggcagagcttgtaagcaacagagg 263
||||| |||||||||| || |||||||| ||||||||||||||||||||||||||||
Sbjct: 424 aggagctcaaccatgccggggctggtggactgtgggcagagcttgtaagcaacagagg 481
>gb|AACV01009093.1| Oryza sativa (japonica cultivar-group) chromosome 4 Ctg009093, whole
genome shotgun sequence
Length = 33275
Score = 75.8 bits (38), Expect = 3e-011
Identities = 53/58 (91%)
Strand = Plus / Minus
Query: 206 aggagatcaaccatgctggagctggtgggttgtgggcagagcttgtaagcaacagagg 263
|||||||||||||||||||||| ||||| | |||||||||||||| |||||||||||
Sbjct: 13252 aggagatcaaccatgctggagcaggtggaatatgggcagagcttgtcagcaacagagg 13195
>ref|NT_079855.2| Oryza sativa (japonica cultivar-group)
Length = 2354488
Score = 75.8 bits (38), Expect = 3e-011
Identities = 53/58 (91%)
Strand = Plus / Minus
Query: 206 aggagatcaaccatgctggagctggtgggttgtgggcagagcttgtaagcaacagagg 263
|||||||||||||||||||||| ||||| | |||||||||||||| |||||||||||
Sbjct: 2232939 aggagatcaaccatgctggagcaggtggaatatgggcagagcttgtcagcaacagagg 2232882
>gb|CH401189.1| Oryza sativa (japonica cultivar-group) chromosome 4 scaffold000026 genomic
scaffold, whole genome shotgun sequence
Length = 11796637
Score = 75.8 bits (38), Expect = 3e-011
Identities = 53/58 (91%)
Strand = Plus / Minus
Query: 206 aggagatcaaccatgctggagctggtgggttgtgggcagagcttgtaagcaacagagg 263
|||||||||||||||||||||| ||||| | |||||||||||||| |||||||||||
Sbjct: 1889438 aggagatcaaccatgctggagcaggtggaatatgggcagagcttgtcagcaacagagg 1889381
>gb|CM000141.1| Oryza sativa (japonica cultivar-group) chromosome 4, whole genome shotgun
sequence
Length = 32311234
Score = 75.8 bits (38), Expect = 3e-011
Identities = 53/58 (91%)
Strand = Plus / Minus
Query: 206 aggagatcaaccatgctggagctggtgggttgtgggcagagcttgtaagcaacagagg 263
|||||||||||||||||||||| ||||| | |||||||||||||| |||||||||||
Sbjct: 9236800 aggagatcaaccatgctggagcaggtggaatatgggcagagcttgtcagcaacagagg 9236743
>emb|AL663008.3|OSJN00209 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0058J09,
complete sequence
Length = 164911
Score = 75.8 bits (38), Expect = 3e-011
Identities = 53/58 (91%)
Strand = Plus / Minus
Query: 206 aggagatcaaccatgctggagctggtgggttgtgggcagagcttgtaagcaacagagg 263
|||||||||||||||||||||| ||||| | |||||||||||||| |||||||||||
Sbjct: 43362 aggagatcaaccatgctggagcaggtggaatatgggcagagcttgtcagcaacagagg 43305
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
sequence
Length = 35498469
Score = 75.8 bits (38), Expect = 3e-011
Identities = 53/58 (91%)
Strand = Plus / Minus
Query: 206 aggagatcaaccatgctggagctggtgggttgtgggcagagcttgtaagcaacagagg 263
|||||||||||||||||||||| ||||| | |||||||||||||| |||||||||||
Sbjct: 11560352 aggagatcaaccatgctggagcaggtggaatatgggcagagcttgtcagcaacagagg 11560295
>dbj|AG212381.1| Oryza sativa (japonica cultivar-group) DNA, clone:NF7791_0_406_1A,
3' flanking sequence of Tos17 insertion in rice strain
NF7791, genomic survey sequence
Length = 327
Score = 67.9 bits (34), Expect = 7e-009
Identities = 96/119 (80%)
Strand = Plus / Plus
Query: 356 catcatgttttgaacgtaacccagttgcacttcggatggaagttctttgtggttctnnnn 415
|||||||||||| |||||||| |||||||||| |||||||| || ||||| ||
Sbjct: 27 catcatgttttgccagtaacccaattgcacttcgcatggaagtactctgtggagctaccg 86
Query: 416 nnnctaatgcctgtccatcgggaggtgttggggtctataatcctggctactggggcatg 474
||||||| || || || ||||||||||| ||||||||||||| ||||||||||||
Sbjct: 87 gaactaatgcttgcccttcaggaggtgttggtatctataatcctggttactggggcatg 145
>gb|CF280793.1|CF280793 14ETL--07-J17.b1 Rice etiolated leaf plasmid cDNA library (14ETL)
Oryza sativa (japonica cultivar-group) cDNA clone
14ETL--07-J17, mRNA sequence
Length = 532
Score = 65.9 bits (33), Expect = 3e-008
Identities = 36/37 (97%)
Strand = Plus / Plus
Query: 449 tctataatcctggctactggggcatgaacattgaaaa 485
||||||||||||| |||||||||||||||||||||||
Sbjct: 36 tctataatcctggttactggggcatgaacattgaaaa 72
>gb|CB636965.1|CB636965 OSJNEa03A01.f OSJNEa Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEa03A01 5', mRNA sequence
Length = 530
Score = 63.9 bits (32), Expect = 1e-007
Identities = 95/116 (81%)
Strand = Plus / Plus
Query: 190 tttggcatctttttcgaggagatcaaccatgctggagctggtgggttgtgggcagagctt 249
||||| || ||||| ||||| ||||||||||| ||||||||||| | ||||| || |||
Sbjct: 350 tttggaatattttttgaggaaatcaaccatgcaggagctggtggaatatgggctgaactt 409
Query: 250 gtaagcaacagaggatttgaggctggtgggcctaatacaccttcgaatattgatcc 305
|| || |||||||| ||||| ||||| || ||| |||| || || || ||||||||
Sbjct: 410 gttagtaacagaggttttgaagctggaggccctcataccccatcaaacattgatcc 465
>gb|CB640067.1|CB640067 OSJNEa13C06.f OSJNEa Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEa13C06 5', mRNA sequence
Length = 601
Score = 63.9 bits (32), Expect = 1e-007
Identities = 95/116 (81%)
Strand = Plus / Plus
Query: 190 tttggcatctttttcgaggagatcaaccatgctggagctggtgggttgtgggcagagctt 249
||||| || ||||| ||||| ||||||||||| ||||||||||| | ||||| || |||
Sbjct: 350 tttggaatattttttgaggaaatcaaccatgcaggagctggtggaatatgggctgaactt 409
Query: 250 gtaagcaacagaggatttgaggctggtgggcctaatacaccttcgaatattgatcc 305
|| || |||||||| ||||| ||||| || ||| |||| || || || ||||||||
Sbjct: 410 gttagtaacagaggttttgaagctggaggccctcataccccatcaaacattgatcc 465
>gb|CB663306.1|CB663306 OSJNEd08B16.f OSJNEd Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEd08B16 5', mRNA sequence
Length = 736
Score = 63.9 bits (32), Expect = 1e-007
Identities = 95/116 (81%)
Strand = Plus / Plus
Query: 190 tttggcatctttttcgaggagatcaaccatgctggagctggtgggttgtgggcagagctt 249
||||| || ||||| ||||| ||||||||||| ||||||||||| | ||||| || |||
Sbjct: 162 tttggaatattttttgaggaaatcaaccatgcaggagctggtggaatatgggctgaactt 221
Query: 250 gtaagcaacagaggatttgaggctggtgggcctaatacaccttcgaatattgatcc 305
|| || |||||||| ||||| ||||| || ||| |||| || || || ||||||||
Sbjct: 222 gttagtaacagaggttttgaagctggaggccctcataccccatcaaacattgatcc 277
>gb|CB670939.1|CB670939 OSJNEe04E10.f OSJNEe Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEe04E10 5', mRNA sequence
Length = 832
Score = 63.9 bits (32), Expect = 1e-007
Identities = 95/116 (81%)
Strand = Plus / Plus
Query: 190 tttggcatctttttcgaggagatcaaccatgctggagctggtgggttgtgggcagagctt 249
||||| || ||||| ||||| ||||||||||| ||||||||||| | ||||| || |||
Sbjct: 291 tttggaatattttttgaggaaatcaaccatgcaggagctggtggaatatgggctgaactt 350
Query: 250 gtaagcaacagaggatttgaggctggtgggcctaatacaccttcgaatattgatcc 305
|| || |||||||| ||||| ||||| || ||| |||| || || || ||||||||
Sbjct: 351 gttagtaacagaggttttgaagctggaggccctcataccccatcaaacattgatcc 406
>gb|CB674068.1|CB674068 OSJNEe08P02.f OSJNEe Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEe08P02 5', mRNA sequence
Length = 752
Score = 63.9 bits (32), Expect = 1e-007
Identities = 95/116 (81%)
Strand = Plus / Plus
Query: 190 tttggcatctttttcgaggagatcaaccatgctggagctggtgggttgtgggcagagctt 249
||||| || ||||| ||||| ||||||||||| ||||||||||| | ||||| || |||
Sbjct: 287 tttggaatattttttgaggaaatcaaccatgcaggagctggtggaatatgggctgaactt 346
Query: 250 gtaagcaacagaggatttgaggctggtgggcctaatacaccttcgaatattgatcc 305
|| || |||||||| ||||| ||||| || ||| |||| || || || ||||||||
Sbjct: 347 gttagtaacagaggttttgaagctggaggccctcataccccatcaaacattgatcc 402
>gb|CF307181.1|CF307181 HDA1--05-P15.g1 OsHDAC1-overexpressing transgenic rice lambda phage
cDNA library I (HDA1) Oryza sativa (japonica
cultivar-group) cDNA clone HDA1--05-P15, mRNA sequence
Length = 669
Score = 63.9 bits (32), Expect = 1e-007
Identities = 95/116 (81%)
Strand = Plus / Plus
Query: 190 tttggcatctttttcgaggagatcaaccatgctggagctggtgggttgtgggcagagctt 249
||||| || ||||| ||||| ||||||||||| ||||||||||| | ||||| || |||
Sbjct: 254 tttggaatattttttgaggaaatcaaccatgcaggagctggtggaatatgggctgaactt 313
Query: 250 gtaagcaacagaggatttgaggctggtgggcctaatacaccttcgaatattgatcc 305
|| || |||||||| ||||| ||||| || ||| |||| || || || ||||||||
Sbjct: 314 gttagtaacagaggttttgaagctggaggccctcataccccatcaaacattgatcc 369
>dbj|AK072576.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023131M13, full
insert sequence
Length = 2272
Score = 63.9 bits (32), Expect = 1e-007
Identities = 95/116 (81%)
Strand = Plus / Plus
Query: 190 tttggcatctttttcgaggagatcaaccatgctggagctggtgggttgtgggcagagctt 249
||||| || ||||| ||||| ||||||||||| ||||||||||| | ||||| || |||
Sbjct: 311 tttggaatattttttgaggaaatcaaccatgcaggagctggtggaatatgggctgaactt 370
Query: 250 gtaagcaacagaggatttgaggctggtgggcctaatacaccttcgaatattgatcc 305
|| || |||||||| ||||| ||||| || ||| |||| || || || ||||||||
Sbjct: 371 gttagtaacagaggttttgaagctggaggccctcataccccatcaaacattgatcc 426
>dbj|AK062739.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-106-F01, full
insert sequence
Length = 668
Score = 61.9 bits (31), Expect = 4e-007
Identities = 55/63 (87%)
Strand = Plus / Plus
Query: 199 tttttcgaggagatcaaccatgctggagctggtgggttgtgggcagagcttgtaagcaac 258
||||| ||||| || ||||||||||||||||||||| | ||||| |||||||| || |||
Sbjct: 369 ttttttgaggaaattaaccatgctggagctggtgggatatgggcggagcttgtcagtaac 428
Query: 259 aga 261
|||
Sbjct: 429 aga 431
>gb|CB637692.1|CB637692 OSJNEa04L18.f OSJNEa Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEa04L18 5', mRNA sequence
Length = 606
Score = 60.0 bits (30), Expect = 2e-006
Identities = 72/86 (83%)
Strand = Plus / Plus
Query: 190 tttggcatctttttcgaggagatcaaccatgctggagctggtgggttgtgggcagagctt 249
||||| || ||||| ||||| ||||||||||| ||||||||||| | ||||| || |||
Sbjct: 514 tttggaatattttttgaggaaatcaaccatgcaggagctggtggaatatgggctgaactt 573
Query: 250 gtaagcaacagaggatttgaggctgg 275
|| || |||||||| ||||| |||||
Sbjct: 574 gttagtaacagaggttttgaagctgg 599
>gb|CB637202.1|CB637202 OSJNEa03H23.f OSJNEa Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEa03H23 5', mRNA sequence
Length = 592
Score = 56.0 bits (28), Expect = 3e-005
Identities = 94/116 (81%)
Strand = Plus / Plus
Query: 190 tttggcatctttttcgaggagatcaaccatgctggagctggtgggttgtgggcagagctt 249
||||| || ||||| ||||| ||||||||||| || |||||||| | ||||| || |||
Sbjct: 274 tttggaatattttttgaggaaatcaaccatgcaggggctggtggaatatgggctgaactt 333
Query: 250 gtaagcaacagaggatttgaggctggtgggcctaatacaccttcgaatattgatcc 305
|| || |||||||| ||||| ||||| || ||| |||| || || || ||||||||
Sbjct: 334 gttagtaacagaggttttgaagctggaggccctcataccccatcaaacattgatcc 389
>gb|CB639189.1|CB639189 OSJNEa08L04.f OSJNEa Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEa08L04 5', mRNA sequence
Length = 280
Score = 56.0 bits (28), Expect = 3e-005
Identities = 94/116 (81%)
Strand = Plus / Plus
Query: 190 tttggcatctttttcgaggagatcaaccatgctggagctggtgggttgtgggcagagctt 249
||||| || ||||| ||||| ||||||||||| || |||||||| | ||||| || |||
Sbjct: 83 tttggaatattttttgaggaaatcaaccatgcaggggctggtggaatatgggctgaactt 142
Query: 250 gtaagcaacagaggatttgaggctggtgggcctaatacaccttcgaatattgatcc 305
|| || |||||||| ||||| ||||| || ||| |||| || || || ||||||||
Sbjct: 143 gttagtaacagaggttttgaagctggaggccctcataccccatcaaacattgatcc 198
>gb|CB640184.1|CB640184 OSJNEa13K04.f OSJNEa Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEa13K04 5', mRNA sequence
Length = 616
Score = 56.0 bits (28), Expect = 3e-005
Identities = 94/116 (81%)
Strand = Plus / Plus
Query: 190 tttggcatctttttcgaggagatcaaccatgctggagctggtgggttgtgggcagagctt 249
||||| || ||||| ||||| ||||||||||| || |||||||| | ||||| || |||
Sbjct: 274 tttggaatattttttgaggaaatcaaccatgcaggggctggtggaatatgggctgaactt 333
Query: 250 gtaagcaacagaggatttgaggctggtgggcctaatacaccttcgaatattgatcc 305
|| || |||||||| ||||| ||||| || ||| |||| || || || ||||||||
Sbjct: 334 gttagtaacagaggttttgaagctggaggccctcataccccatcaaacattgatcc 389
>gb|CB643140.1|CB643140 OSJNEb03K21.f OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb03K21 5', mRNA sequence
Length = 839
Score = 56.0 bits (28), Expect = 3e-005
Identities = 94/116 (81%)
Strand = Plus / Plus
Query: 190 tttggcatctttttcgaggagatcaaccatgctggagctggtgggttgtgggcagagctt 249
||||| || ||||| ||||| ||||||||||| || |||||||| | ||||| || |||
Sbjct: 264 tttggaatattttttgaggaaatcaaccatgcaggggctggtggaatatgggctgaactt 323
Query: 250 gtaagcaacagaggatttgaggctggtgggcctaatacaccttcgaatattgatcc 305
|| || |||||||| ||||| ||||| || ||| |||| || || || ||||||||
Sbjct: 324 gttagtaacagaggttttgaagctggaggccctcataccccatcaaacattgatcc 379
>gb|CB661901.1|CB661901 OSJNEd05F11.f OSJNEd Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEd05F11 5', mRNA sequence
Length = 871
Score = 56.0 bits (28), Expect = 3e-005
Identities = 94/116 (81%)
Strand = Plus / Plus
Query: 190 tttggcatctttttcgaggagatcaaccatgctggagctggtgggttgtgggcagagctt 249
||||| || ||||| ||||| ||||||||||| ||||||||||| | ||||| || |||
Sbjct: 291 tttggaatattttttgaggaaatcaaccatgcaggagctggtggaatatgggctgaactt 350
Query: 250 gtaagcaacagaggatttgaggctggtgggcctaatacaccttcgaatattgatcc 305
|| | |||||||| ||||| ||||| || ||| |||| || || || ||||||||
Sbjct: 351 gttactaacagaggttttgaagctggaggccctcataccccatcaaacattgatcc 406
>gb|CB669691.1|CB669691 OSJNEe02F24.f OSJNEe Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEe02F24 5', mRNA sequence
Length = 837
Score = 56.0 bits (28), Expect = 3e-005
Identities = 94/116 (81%)
Strand = Plus / Plus
Query: 190 tttggcatctttttcgaggagatcaaccatgctggagctggtgggttgtgggcagagctt 249
||||| || ||||| ||||| ||||||||||| || |||||||| | ||||| || |||
Sbjct: 311 tttggaatattttttgaggaaatcaaccatgcaggggctggtggaatatgggctgaactt 370
Query: 250 gtaagcaacagaggatttgaggctggtgggcctaatacaccttcgaatattgatcc 305
|| || |||||||| ||||| ||||| || ||| |||| || || || ||||||||
Sbjct: 371 gttagtaacagaggttttgaagctggaggccctcataccccatcaaacattgatcc 426
>gb|CB671149.1|CB671149 OSJNEe04J07.f OSJNEe Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEe04J07 5', mRNA sequence
Length = 814
Score = 56.0 bits (28), Expect = 3e-005
Identities = 94/116 (81%)
Strand = Plus / Plus
Query: 190 tttggcatctttttcgaggagatcaaccatgctggagctggtgggttgtgggcagagctt 249
||||| || ||||| ||||| ||||||||||| || |||||||| | ||||| || |||
Sbjct: 227 tttggaatattttttgaggaaatcaaccatgcaggggctggtggaatatgggctgaactt 286
Query: 250 gtaagcaacagaggatttgaggctggtgggcctaatacaccttcgaatattgatcc 305
|| || |||||||| ||||| ||||| || ||| |||| || || || ||||||||
Sbjct: 287 gttagtaacagaggttttgaagctggaggccctcataccccatcaaacattgatcc 342
>gb|CB673444.1|CB673444 OSJNEe07P13.f OSJNEe Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEe07P13 5', mRNA sequence
Length = 683
Score = 56.0 bits (28), Expect = 3e-005
Identities = 94/116 (81%)
Strand = Plus / Plus
Query: 190 tttggcatctttttcgaggagatcaaccatgctggagctggtgggttgtgggcagagctt 249
||||| || ||||| ||||| ||||||||||| || |||||||| | ||||| || |||
Sbjct: 352 tttggaatattttttgaggaaatcaaccatgcaggggctggtggaatatgggctgaactt 411
Query: 250 gtaagcaacagaggatttgaggctggtgggcctaatacaccttcgaatattgatcc 305
|| || |||||||| ||||| ||||| || ||| |||| || || || ||||||||
Sbjct: 412 gttagtaacagaggctttgaagctggaggccctcataccccatcaaacattgatcc 467
>gb|CB676487.1|CB676487 OSJNEe12M09.f OSJNEe Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEe12M09 5', mRNA sequence
Length = 851
Score = 56.0 bits (28), Expect = 3e-005
Identities = 94/116 (81%)
Strand = Plus / Plus
Query: 190 tttggcatctttttcgaggagatcaaccatgctggagctggtgggttgtgggcagagctt 249
||||| || ||||| ||||| ||||||||||| || |||||||| | ||||| || |||
Sbjct: 272 tttggaatattttttgaggaaatcaaccatgcaggggctggtggaatatgggctgaactt 331
Query: 250 gtaagcaacagaggatttgaggctggtgggcctaatacaccttcgaatattgatcc 305
|| || |||||||| ||||| ||||| || ||| |||| || || || ||||||||
Sbjct: 332 gttagtaacagaggttttgaagctggaggccctcataccccatcaaacattgatcc 387
>dbj|AK065240.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002I08, full
insert sequence
Length = 2285
Score = 56.0 bits (28), Expect = 3e-005
Identities = 94/116 (81%)
Strand = Plus / Plus
Query: 190 tttggcatctttttcgaggagatcaaccatgctggagctggtgggttgtgggcagagctt 249
||||| || ||||| ||||| ||||||||||| || |||||||| | ||||| || |||
Sbjct: 316 tttggaatattttttgaggaaatcaaccatgcaggggctggtggaatatgggctgaactt 375
Query: 250 gtaagcaacagaggatttgaggctggtgggcctaatacaccttcgaatattgatcc 305
|| || |||||||| ||||| ||||| || ||| |||| || || || ||||||||
Sbjct: 376 gttagtaacagaggttttgaagctggaggccctcataccccatcaaacattgatcc 431
>emb|BX000507.2|CNS08CDX Oryza sativa chromosome 12, . BAC OJ1003_C01 of library Monsanto from
chromosome 12 of cultivar Nipponbare of ssp. japonica of
Oryza sativa (rice), complete sequence
Length = 157453
Score = 56.0 bits (28), Expect = 3e-005
Identities = 43/48 (89%)
Strand = Plus / Minus
Query: 214 aaccatgctggagctggtgggttgtgggcagagcttgtaagcaacaga 261
||||||||||||||||||||| | ||||| |||||||| || ||||||
Sbjct: 31450 aaccatgctggagctggtgggatatgggcggagcttgtcagtaacaga 31403
Score = 44.1 bits (22), Expect = 0.097
Identities = 49/58 (84%)
Strand = Plus / Minus
Query: 206 aggagatcaaccatgctggagctggtgggttgtgggcagagcttgtaagcaacagagg 263
|||| ||||||||||| ||||||||||| | ||||| || ||||| || ||||||||
Sbjct: 69451 aggaaatcaaccatgcaggagctggtggaatatgggctgaacttgttagtaacagagg 69394
>ref|NT_107145.1| Oryza sativa (japonica cultivar-group)
Length = 1968172
Score = 56.0 bits (28), Expect = 3e-005
Identities = 43/48 (89%)
Strand = Plus / Plus
Query: 214 aaccatgctggagctggtgggttgtgggcagagcttgtaagcaacaga 261
||||||||||||||||||||| | ||||| |||||||| || ||||||
Sbjct: 1397720 aaccatgctggagctggtgggatatgggcggagcttgtcagtaacaga 1397767
Score = 44.1 bits (22), Expect = 0.097
Identities = 49/58 (84%)
Strand = Plus / Plus
Query: 206 aggagatcaaccatgctggagctggtgggttgtgggcagagcttgtaagcaacagagg 263
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Sbjct: 1359719 aggaaatcaaccatgcaggagctggtggaatatgggctgaacttgttagtaacagagg 1359776
Database: Oryza_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:41 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 814,941
Number of Sequences: 438736
Number of extensions: 814941
Number of successful extensions: 3654
Number of sequences better than 0.5: 70
Number of HSP's better than 0.5 without gapping: 70
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 3340
Number of HSP's gapped (non-prelim): 289
length of query: 677
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 656
effective length of database: 2,791,206,460
effective search space: 1831031437760
effective search space used: 1831031437760
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)