BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QBS9a01.xg.2.1
(480 letters)
Database: Oryza_nucl_with_EST.fasta
438,736 sequences; 2,800,419,916 total letters
Score E
Sequences producing significant alignments: (bits) Value
dbj|AK104345.1| Oryza sativa (japonica cultivar-group) cDNA... 426 e-117
dbj|AK111821.1| Oryza sativa (japonica cultivar-group) cDNA... 426 e-117
emb|AJ495784.1|OSA495784 Oryza sativa (japonica cultivar-gr... 426 e-117
dbj|AK099636.1| Oryza sativa (japonica cultivar-group) cDNA... 404 e-110
gb|AC137621.2| Oryza sativa (japonica cultivar-group) chrom... 375 e-101
gb|AACV01010857.1| Oryza sativa (japonica cultivar-group) c... 375 e-101
ref|NT_107216.1| Oryza sativa (japonica cultivar-group) 375 e-101
gb|CH401191.1| Oryza sativa (japonica cultivar-group) chrom... 375 e-101
gb|CM000142.1| Oryza sativa (japonica cultivar-group) chrom... 375 e-101
dbj|AP008211.1| Oryza sativa (japonica cultivar-group) geno... 375 e-101
gb|CB656567.1|CB656567 OSJNEc11B07.f OSJNEc Oryza sativa (j... 355 1e-095
gb|AQ861558.1|AQ861558 nbeb0017G17f CUGI Rice BAC Library (... 278 3e-072
gb|AQ256517.1|AQ256517 nbxb0016M14f CUGI Rice BAC Library O... 238 2e-060
dbj|AK111803.1| Oryza sativa (japonica cultivar-group) cDNA... 161 4e-037
ref|XM_462838.1| Oryza sativa (japonica cultivar-group), p... 161 4e-037
emb|AJ495786.1|OSA495786 Oryza sativa (japonica cultivar-gr... 161 4e-037
dbj|AP003018.2| Oryza sativa (japonica cultivar-group) geno... 143 1e-031
gb|AACV01000735.1| Oryza sativa (japonica cultivar-group) c... 143 1e-031
dbj|BA000010.8| Oryza sativa (japonica cultivar-group) geno... 143 1e-031
ref|NT_036323.3| Oryza sativa (japonica cultivar-group) 143 1e-031
dbj|AP003020.2| Oryza sativa (japonica cultivar-group) geno... 143 1e-031
gb|CH401164.1| Oryza sativa (japonica cultivar-group) chrom... 143 1e-031
gb|CM000138.1| Oryza sativa (japonica cultivar-group) chrom... 143 1e-031
dbj|AP008207.1| Oryza sativa (japonica cultivar-group) geno... 143 1e-031
gb|AQ330326.1|AQ330326 nbxb0046P02f CUGI Rice BAC Library O... 86 2e-014
ref|NM_193333.1| Oryza sativa (japonica cultivar-group), p... 74 8e-011
gb|AACV01001493.1| Oryza sativa (japonica cultivar-group) c... 70 1e-009
ref|NT_079926.2| Oryza sativa (japonica cultivar-group) 70 1e-009
dbj|AP004231.3| Oryza sativa (japonica cultivar-group) geno... 70 1e-009
dbj|AP004232.4| Oryza sativa (japonica cultivar-group) geno... 70 1e-009
gb|CH401166.1| Oryza sativa (japonica cultivar-group) chrom... 70 1e-009
gb|AC087220.9| Oryza sativa chromosome 3 BAC OSJNBb0097F01 ... 62 3e-007
ref|NT_079854.2| Oryza sativa (japonica cultivar-group) 62 3e-007
dbj|AP008209.1| Oryza sativa (japonica cultivar-group) geno... 62 3e-007
gb|DP000009.1| Oryza sativa (japonica cultivar-group) chrom... 62 3e-007
gb|BP184885.1|BP184885 BP184885 pNS rice callus cDNA Oryza ... 60 1e-006
dbj|AK111782.1| Oryza sativa (japonica cultivar-group) cDNA... 58 5e-006
ref|NM_192221.1| Oryza sativa (japonica cultivar-group), p... 58 5e-006
ref|XM_470673.1| Oryza sativa (japonica cultivar-group), mRNA 58 5e-006
gb|AACV01002173.1| Oryza sativa (japonica cultivar-group) c... 54 7e-005
gb|AACV01016284.1| Oryza sativa (japonica cultivar-group) c... 54 7e-005
gb|AACV01016862.1| Oryza sativa (japonica cultivar-group) c... 54 7e-005
ref|NM_187376.1| Oryza sativa (japonica cultivar-group), mRNA 54 7e-005
ref|NT_079927.2| Oryza sativa (japonica cultivar-group) 54 7e-005
dbj|AP004259.2| Oryza sativa (japonica cultivar-group) geno... 54 7e-005
dbj|AP004334.2| Oryza sativa (japonica cultivar-group) geno... 54 7e-005
dbj|AP003752.3| Oryza sativa (japonica cultivar-group) geno... 54 7e-005
dbj|AP004006.5| Oryza sativa (japonica cultivar-group) geno... 54 7e-005
ref|NT_079899.2| Oryza sativa (japonica cultivar-group) 54 7e-005
dbj|AP003245.4| Oryza sativa (japonica cultivar-group) geno... 54 7e-005
gb|CH401226.1| Oryza sativa (japonica cultivar-group) chrom... 54 7e-005
gb|CH401168.1| Oryza sativa (japonica cultivar-group) chrom... 54 7e-005
gb|CM000144.1| Oryza sativa (japonica cultivar-group) chrom... 54 7e-005
dbj|AP008213.1| Oryza sativa (japonica cultivar-group) geno... 54 7e-005
gb|CB643957.1|CB643957 OSJNEb04P04.f OSJNEb Oryza sativa (j... 50 0.001
ref|NM_193128.1| Oryza sativa (japonica cultivar-group), mRNA 50 0.001
gb|AU083547.1|AU083547 AU083547 Rice green shoot Oryza sati... 48 0.004
dbj|AK066834.1| Oryza sativa (japonica cultivar-group) cDNA... 46 0.017
dbj|AK099108.1| Oryza sativa (japonica cultivar-group) cDNA... 46 0.017
dbj|AK104053.1| Oryza sativa (japonica cultivar-group) cDNA... 46 0.017
ref|XM_475269.1| Oryza sativa (japonica cultivar-group), p... 46 0.017
gb|AY873246.1|AY873246 04ET3_013_I_007_019_029C07 Oryza sat... 44 0.068
gb|AF474141.1| Oryza sativa typical A-type R2R3 Myb protein... 44 0.068
gb|AC137267.2| Genomic sequence for Oryza sativa, Nipponbar... 44 0.068
gb|AC133450.6| Oryza sativa chromosome 3 BAC OSJNBa0072F13 ... 44 0.068
gb|AACV01006437.1| Oryza sativa (japonica cultivar-group) c... 44 0.068
gb|AACV01008001.1| Oryza sativa (japonica cultivar-group) c... 44 0.068
ref|NT_107187.1| Oryza sativa (japonica cultivar-group) 44 0.068
ref|NT_107192.1| Oryza sativa (japonica cultivar-group) 44 0.068
gb|CH401176.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.068
gb|CH401173.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.068
gb|CM000140.1| Oryza sativa (japonica cultivar-group) chrom... 44 0.068
gb|AU082155.1|AU082155 AU082155 Rice root Oryza sativa (jap... 42 0.27
gb|AU082166.1|AU082166 AU082166 Rice cDNA from young root O... 42 0.27
gb|AU183276.1|AU183276 AU183276 Rice cDNA from immature lea... 42 0.27
gb|CB653197.1|CB653197 OSJNEc04A04.f OSJNEc Oryza sativa (j... 42 0.27
dbj|AP005070.1| Oryza sativa (japonica cultivar-group) chro... 42 0.27
dbj|AK060684.1| Oryza sativa (japonica cultivar-group) cDNA... 42 0.27
dbj|AK112018.1| Oryza sativa (japonica cultivar-group) cDNA... 42 0.27
dbj|AK112056.1| Oryza sativa (japonica cultivar-group) cDNA... 42 0.27
dbj|AP006523.2| Oryza sativa (japonica cultivar-group) geno... 42 0.27
gb|AACV01004944.1| Oryza sativa (japonica cultivar-group) c... 42 0.27
gb|AACV01012232.1| Oryza sativa (japonica cultivar-group) c... 42 0.27
ref|NM_190827.1| Oryza sativa (japonica cultivar-group), p... 42 0.27
ref|XM_466825.1| Oryza sativa (japonica cultivar-group), mRNA 42 0.27
ref|XM_483665.1| Oryza sativa (japonica cultivar-group), mRNA 42 0.27
ref|NT_107181.1| Oryza sativa (japonica cultivar-group) 42 0.27
ref|NT_107212.1| Oryza sativa (japonica cultivar-group) 42 0.27
gb|AC130600.3| Oryza sativa (japonica cultivar-group) chrom... 42 0.27
gb|CH401206.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.27
gb|CH401170.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.27
gb|CM000139.1| Oryza sativa (japonica cultivar-group) chrom... 42 0.27
dbj|AP008208.1| Oryza sativa (japonica cultivar-group) geno... 42 0.27
gb|AQ287492.1|AQ287492 nbxb0030K04r CUGI Rice BAC Library O... 40 1.1
gb|AQ051267.1|AQ051267 nbxb0001cF08f CUGI Rice BAC Library ... 40 1.1
gb|C73695.1|C73695 C73695 Rice panicle (longer than 10cm) O... 40 1.1
dbj|AP003922.2| Oryza sativa (japonica cultivar-group) geno... 40 1.1
gb|AY459335.1| Oryza sativa (japonica cultivar-group) clone... 40 1.1
gb|AC118285.2| Oryza sativa (japonica cultivar-group) chrom... 40 1.1
gb|AC098833.2| Oryza sativa (japonica cultivar-group) chrom... 40 1.1
gb|AACV01002776.1| Oryza sativa (japonica cultivar-group) c... 40 1.1
gb|AACV01012646.1| Oryza sativa (japonica cultivar-group) c... 40 1.1
ref|NT_107219.1| Oryza sativa (japonica cultivar-group) 40 1.1
dbj|AP004669.3| Oryza sativa (japonica cultivar-group) geno... 40 1.1
dbj|AP003297.3| Oryza sativa (japonica cultivar-group) geno... 40 1.1
gb|AU081563.1|AU081563 AU081563 Rice panicle shorter than 3... 38 4.2
emb|AL607104.1|OSJN01012 Oryza sativa (japonica cultivar-gr... 38 4.2
dbj|AK064679.1| Oryza sativa (japonica cultivar-group) cDNA... 38 4.2
dbj|AK069869.1| Oryza sativa (japonica cultivar-group) cDNA... 38 4.2
dbj|AK072403.1| Oryza sativa (japonica cultivar-group) cDNA... 38 4.2
dbj|AK107483.1| Oryza sativa (japonica cultivar-group) cDNA... 38 4.2
dbj|AK111788.1| Oryza sativa (japonica cultivar-group) cDNA... 38 4.2
emb|AL844874.1|CNS08CAX Oryza sativa chromosome 12, . BAC O... 38 4.2
emb|AL928753.3|CNS08CBQ Oryza sativa chromosome 12, . BAC O... 38 4.2
dbj|AP006265.2| Oryza sativa (japonica cultivar-group) geno... 38 4.2
dbj|AP004704.3| Oryza sativa (japonica cultivar-group) geno... 38 4.2
dbj|AP005321.2| Oryza sativa (japonica cultivar-group) geno... 38 4.2
dbj|AP005421.3| Oryza sativa (japonica cultivar-group) geno... 38 4.2
gb|AC147962.1| Oryza sativa chromosome 3 BAC OSJNBa0083K01 ... 38 4.2
ref|NT_107150.1| Oryza sativa (japonica cultivar-group) 38 4.2
ref|NT_107156.1| Oryza sativa (japonica cultivar-group) 38 4.2
gb|AACV01017741.1| Oryza sativa (japonica cultivar-group) c... 38 4.2
gb|AACV01018966.1| Oryza sativa (japonica cultivar-group) c... 38 4.2
gb|AACV01019923.1| Oryza sativa (japonica cultivar-group) c... 38 4.2
gb|AACV01024035.1| Oryza sativa (japonica cultivar-group) c... 38 4.2
gb|AACV01025277.1| Oryza sativa (japonica cultivar-group) c... 38 4.2
ref|XM_480985.1| Oryza sativa (japonica cultivar-group), mRNA 38 4.2
ref|XM_483654.1| Oryza sativa (japonica cultivar-group), mRNA 38 4.2
ref|XM_483655.1| Oryza sativa (japonica cultivar-group), mRNA 38 4.2
ref|NT_107083.1| Oryza sativa (japonica cultivar-group) 38 4.2
ref|NT_107174.1| Oryza sativa (japonica cultivar-group) 38 4.2
ref|XM_507321.1| PREDICTED Oryza sativa (japonica cultivar-... 38 4.2
dbj|AP005495.3| Oryza sativa (japonica cultivar-group) geno... 38 4.2
ref|NT_107239.1| Oryza sativa (japonica cultivar-group) 38 4.2
gb|CH401282.1| Oryza sativa (japonica cultivar-group) chrom... 38 4.2
gb|CH401272.1| Oryza sativa (japonica cultivar-group) chrom... 38 4.2
gb|CH401242.1| Oryza sativa (japonica cultivar-group) chrom... 38 4.2
gb|CH401230.1| Oryza sativa (japonica cultivar-group) chrom... 38 4.2
gb|CM000149.1| Oryza sativa (japonica cultivar-group) chrom... 38 4.2
gb|CM000146.1| Oryza sativa (japonica cultivar-group) chrom... 38 4.2
gb|CM000145.1| Oryza sativa (japonica cultivar-group) chrom... 38 4.2
emb|Y11351.1|OSMYB1402 O.sativa mRNA for myb factor, 1402 bp 38 4.2
dbj|AP008214.1| Oryza sativa (japonica cultivar-group) geno... 38 4.2
dbj|AP008215.1| Oryza sativa (japonica cultivar-group) geno... 38 4.2
dbj|AP008218.1| Oryza sativa (japonica cultivar-group) geno... 38 4.2
gb|DP000011.1| Oryza sativa (japonica cultivar-group) chrom... 38 4.2
>dbj|AK104345.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-D09, full
insert sequence
Length = 1894
Score = 426 bits (215), Expect = e-117
Identities = 398/459 (86%)
Strand = Plus / Plus
Query: 22 gaagaagacctcatcatcgagctgcacgctgtcctcgggaacaggtggtctcaaattgca 81
||||||||||||||||| ||||| || |||||||| ||||||||||||||||| ||||||
Sbjct: 310 gaagaagacctcatcattgagctccatgctgtccttgggaacaggtggtctcagattgca 369
Query: 82 gcgcagctgccagggaggactgataatgagatcaagaatctatggaactcgtgcatcaag 141
|| |||||||| ||||||||||| || |||||||||||||| ||||| || |||||||||
Sbjct: 370 gctcagctgcctgggaggactgacaacgagatcaagaatctctggaattcttgcatcaag 429
Query: 142 aagaagctgaggcagaaaggcattgatcccaacacccacaagccacttactgaggctgat 201
|||||||| |||||||||||||||||||||||||||||||||| || || |||||||||
Sbjct: 430 aagaagctccggcagaaaggcattgatcccaacacccacaagcccctcaccgaggctgat 489
Query: 202 cacggcggtgcagctcccaccatcagcaccgagagaacctcagggtccagcgacatcaac 261
| | | || ||||| ||||| ||||||||||||| |||||||||||||||||| |||||
Sbjct: 490 cgcaggggagcagcacccacagtcagcaccgagaggacctcagggtccagcgacgtcaac 549
Query: 262 ccatcaagcactggtcctctggggaacttgagccccctcctcagcgagacggctcaatca 321
|| ||||| ||||| |||| ||||||||||||| ||||||||||||||| || ||||||
Sbjct: 550 ccgtcaagtgctggtgctctagggaacttgagccacctcctcagcgagacagcacaatca 609
Query: 322 tcaatgctgatgcccgtgtacgacaagaatcgtgctgaaacaccaaacttggcacgccct 381
||||||||| |||| ||||| || ||||||| ||||||| ||| |||| ||||||||
Sbjct: 610 tcaatgctgctgccggtgtatgataagaatcaccctgaaactgcaagcttgccacgccct 669
Query: 382 aagctgccaccaaaggagctgttcctggagcagcttactgctggacacgagagtccatca 441
||| |||||||||||||| |||| || || ||||||||||| || |||||||| ||||||
Sbjct: 670 aaggtgccaccaaaggagttgtttcttgaccagcttactgccggtcacgagagcccatca 729
Query: 442 acctgccactcatcaggccaaactctctatttccctttc 480
| |||| ||||||||| | ||| || ||||| ||||||
Sbjct: 730 agttgccgctcatcaggtccaaccctgtattttcctttc 768
>dbj|AK111821.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023018J24, full
insert sequence
Length = 3716
Score = 426 bits (215), Expect = e-117
Identities = 398/459 (86%)
Strand = Plus / Plus
Query: 22 gaagaagacctcatcatcgagctgcacgctgtcctcgggaacaggtggtctcaaattgca 81
||||||||||||||||| ||||| || |||||||| ||||||||||||||||| ||||||
Sbjct: 2145 gaagaagacctcatcattgagctccatgctgtccttgggaacaggtggtctcagattgca 2204
Query: 82 gcgcagctgccagggaggactgataatgagatcaagaatctatggaactcgtgcatcaag 141
|| |||||||| ||||||||||| || |||||||||||||| ||||| || |||||||||
Sbjct: 2205 gctcagctgcctgggaggactgacaacgagatcaagaatctctggaattcttgcatcaag 2264
Query: 142 aagaagctgaggcagaaaggcattgatcccaacacccacaagccacttactgaggctgat 201
|||||||| |||||||||||||||||||||||||||||||||| || || |||||||||
Sbjct: 2265 aagaagctccggcagaaaggcattgatcccaacacccacaagcccctcaccgaggctgat 2324
Query: 202 cacggcggtgcagctcccaccatcagcaccgagagaacctcagggtccagcgacatcaac 261
| | | || ||||| ||||| ||||||||||||| |||||||||||||||||| |||||
Sbjct: 2325 cgcaggggagcagcacccacagtcagcaccgagaggacctcagggtccagcgacgtcaac 2384
Query: 262 ccatcaagcactggtcctctggggaacttgagccccctcctcagcgagacggctcaatca 321
|| ||||| ||||| |||| ||||||||||||| ||||||||||||||| || ||||||
Sbjct: 2385 ccgtcaagtgctggtgctctagggaacttgagccacctcctcagcgagacagcacaatca 2444
Query: 322 tcaatgctgatgcccgtgtacgacaagaatcgtgctgaaacaccaaacttggcacgccct 381
||||||||| |||| ||||| || ||||||| ||||||| ||| |||| ||||||||
Sbjct: 2445 tcaatgctgctgccggtgtatgataagaatcaccctgaaactgcaagcttgccacgccct 2504
Query: 382 aagctgccaccaaaggagctgttcctggagcagcttactgctggacacgagagtccatca 441
||| |||||||||||||| |||| || || ||||||||||| || |||||||| ||||||
Sbjct: 2505 aaggtgccaccaaaggagttgtttcttgaccagcttactgccggtcacgagagcccatca 2564
Query: 442 acctgccactcatcaggccaaactctctatttccctttc 480
| |||| ||||||||| | ||| || ||||| ||||||
Sbjct: 2565 agttgccgctcatcaggtccaaccctgtattttcctttc 2603
>emb|AJ495784.1|OSA495784 Oryza sativa (japonica cultivar-group) mRNA for MYB16 protein
Length = 1925
Score = 426 bits (215), Expect = e-117
Identities = 398/459 (86%)
Strand = Plus / Plus
Query: 22 gaagaagacctcatcatcgagctgcacgctgtcctcgggaacaggtggtctcaaattgca 81
||||||||||||||||| ||||| || |||||||| ||||||||||||||||| ||||||
Sbjct: 514 gaagaagacctcatcattgagctccatgctgtccttgggaacaggtggtctcagattgca 573
Query: 82 gcgcagctgccagggaggactgataatgagatcaagaatctatggaactcgtgcatcaag 141
|| |||||||| ||||||||||| || |||||||||||||| ||||| || |||||||||
Sbjct: 574 gctcagctgcctgggaggactgacaacgagatcaagaatctctggaattcttgcatcaag 633
Query: 142 aagaagctgaggcagaaaggcattgatcccaacacccacaagccacttactgaggctgat 201
|||||||| |||||||||||||||||||||||||||||||||| || || |||||||||
Sbjct: 634 aagaagctccggcagaaaggcattgatcccaacacccacaagcccctcaccgaggctgat 693
Query: 202 cacggcggtgcagctcccaccatcagcaccgagagaacctcagggtccagcgacatcaac 261
| | | || ||||| ||||| ||||||||||||| |||||||||||||||||| |||||
Sbjct: 694 cgcaggggagcagcacccacagtcagcaccgagaggacctcagggtccagcgacgtcaac 753
Query: 262 ccatcaagcactggtcctctggggaacttgagccccctcctcagcgagacggctcaatca 321
|| ||||| ||||| |||| ||||||||||||| ||||||||||||||| || ||||||
Sbjct: 754 ccgtcaagtgctggtgctctagggaacttgagccacctcctcagcgagacagcacaatca 813
Query: 322 tcaatgctgatgcccgtgtacgacaagaatcgtgctgaaacaccaaacttggcacgccct 381
||||||||| |||| ||||| || ||||||| ||||||| ||| |||| ||||||||
Sbjct: 814 tcaatgctgctgccggtgtatgataagaatcaccctgaaactgcaagcttgccacgccct 873
Query: 382 aagctgccaccaaaggagctgttcctggagcagcttactgctggacacgagagtccatca 441
||| |||||||||||||| |||| || || ||||||||||| || |||||||| ||||||
Sbjct: 874 aaggtgccaccaaaggagttgtttcttgaccagcttactgccggtcacgagagcccatca 933
Query: 442 acctgccactcatcaggccaaactctctatttccctttc 480
| |||| ||||||||| | ||| || ||||| ||||||
Sbjct: 934 agttgccgctcatcaggtccaaccctgtattttcctttc 972
>dbj|AK099636.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013059L07, full
insert sequence
Length = 2207
Score = 404 bits (204), Expect = e-110
Identities = 397/460 (86%), Gaps = 1/460 (0%)
Strand = Plus / Plus
Query: 22 gaagaagacctcatcatcgagctgcacgctgtcctcgggaacaggtggtctcaaattgca 81
||||||||||||||||| ||||| || |||||||| ||||||||||||||||| ||||||
Sbjct: 622 gaagaagacctcatcattgagctccatgctgtccttgggaacaggtggtctcagattgca 681
Query: 82 gcgcagctgccagggaggactgataatgagatcaagaatctatggaactcgtgcatcaag 141
|| |||||||| ||||||||||| || |||||||||||||| ||||| || |||||||||
Sbjct: 682 gctcagctgcctgggaggactgacaacgagatcaagaatctctggaattcttgcatcaag 741
Query: 142 aagaagctgaggcagaaaggcattgatcccaacacccacaagccacttactgaggctgat 201
|||||||| |||||||||||||||||||||||||||||||||| || || |||||||||
Sbjct: 742 aagaagctccggcagaaaggcattgatcccaacacccacaagcccctcaccgaggctgat 801
Query: 202 cacggcggtgcagctcccaccatcagcaccgagagaacctcagggtccagcgacatcaac 261
| | | || ||||| ||||| ||||||||||||| |||||||||||||||||| |||||
Sbjct: 802 cgcaggggagcagcacccacagtcagcaccgagaggacctcagggtccagcgacgtcaac 861
Query: 262 ccatcaagcactggtcctctggggaacttgagccccctcctcagcgagacggctcaatca 321
|| ||||| ||||| |||| ||||||||||||| ||||||||||||||| || ||||||
Sbjct: 862 ccgtcaagtgctggtgctctagggaacttgagccacctcctcagcgagacagcacaatca 921
Query: 322 tcaatgctgatgcccgtgtacgacaagaatcgtgctgaaacaccaaacttggcacgccct 381
||||||||| |||| ||||| || ||||||| ||||||| ||| |||| ||||||||
Sbjct: 922 tcaatgctgctgccggtgtatgataagaatcaccctgaaactgcaagcttgccacgccct 981
Query: 382 aagctgccaccaaaggag-ctgttcctggagcagcttactgctggacacgagagtccatc 440
||| |||||||||||| | |||| || || ||||||||||| || |||||||| |||||
Sbjct: 982 aaggtgccaccaaaggggtttgtttcttgaccagcttactgccggtcacgagagcccatc 1041
Query: 441 aacctgccactcatcaggccaaactctctatttccctttc 480
|| |||| ||||||||| | ||| || ||||| ||||||
Sbjct: 1042 aagttgccgctcatcaggtccaaccctgtattttcctttc 1081
>gb|AC137621.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone
OSJNBb0111O13, complete sequence
Length = 126332
Score = 375 bits (189), Expect = e-101
Identities = 360/417 (86%)
Strand = Plus / Plus
Query: 64 aggtggtctcaaattgcagcgcagctgccagggaggactgataatgagatcaagaatcta 123
||||||||||| |||||||| |||||||| ||||||||||| || ||||||||||||||
Sbjct: 85933 aggtggtctcagattgcagctcagctgcctgggaggactgacaacgagatcaagaatctc 85992
Query: 124 tggaactcgtgcatcaagaagaagctgaggcagaaaggcattgatcccaacacccacaag 183
||||| || ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 85993 tggaattcttgcatcaagaagaagctccggcagaaaggcattgatcccaacacccacaag 86052
Query: 184 ccacttactgaggctgatcacggcggtgcagctcccaccatcagcaccgagagaacctca 243
|| || || |||||||||| | | || ||||| ||||| ||||||||||||| ||||||
Sbjct: 86053 cccctcaccgaggctgatcgcaggggagcagcacccacagtcagcaccgagaggacctca 86112
Query: 244 gggtccagcgacatcaacccatcaagcactggtcctctggggaacttgagccccctcctc 303
|||||||||||| ||||||| ||||| ||||| |||| ||||||||||||| |||||||
Sbjct: 86113 gggtccagcgacgtcaacccgtcaagtgctggtgctctagggaacttgagccacctcctc 86172
Query: 304 agcgagacggctcaatcatcaatgctgatgcccgtgtacgacaagaatcgtgctgaaaca 363
|||||||| || ||||||||||||||| |||| ||||| || ||||||| |||||||
Sbjct: 86173 agcgagacagcacaatcatcaatgctgctgccggtgtatgataagaatcaccctgaaact 86232
Query: 364 ccaaacttggcacgccctaagctgccaccaaaggagctgttcctggagcagcttactgct 423
||| |||| ||||||||||| |||||||||||||| |||| || || |||||||||||
Sbjct: 86233 gcaagcttgccacgccctaaggtgccaccaaaggagttgtttcttgaccagcttactgcc 86292
Query: 424 ggacacgagagtccatcaacctgccactcatcaggccaaactctctatttccctttc 480
|| |||||||| ||||||| |||| ||||||||| | ||| || ||||| ||||||
Sbjct: 86293 ggtcacgagagcccatcaagttgccgctcatcaggtccaaccctgtattttcctttc 86349
Score = 60.0 bits (30), Expect = 1e-006
Identities = 42/46 (91%)
Strand = Plus / Plus
Query: 22 gaagaagacctcatcatcgagctgcacgctgtcctcgggaacaggt 67
||||||||||||||||| ||||| || |||||||| ||||||||||
Sbjct: 85786 gaagaagacctcatcattgagctccatgctgtccttgggaacaggt 85831
>gb|AACV01010857.1| Oryza sativa (japonica cultivar-group) chromosome 5 Ctg010857, whole
genome shotgun sequence
Length = 29601
Score = 375 bits (189), Expect = e-101
Identities = 360/417 (86%)
Strand = Plus / Minus
Query: 64 aggtggtctcaaattgcagcgcagctgccagggaggactgataatgagatcaagaatcta 123
||||||||||| |||||||| |||||||| ||||||||||| || ||||||||||||||
Sbjct: 9852 aggtggtctcagattgcagctcagctgcctgggaggactgacaacgagatcaagaatctc 9793
Query: 124 tggaactcgtgcatcaagaagaagctgaggcagaaaggcattgatcccaacacccacaag 183
||||| || ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 9792 tggaattcttgcatcaagaagaagctccggcagaaaggcattgatcccaacacccacaag 9733
Query: 184 ccacttactgaggctgatcacggcggtgcagctcccaccatcagcaccgagagaacctca 243
|| || || |||||||||| | | || ||||| ||||| ||||||||||||| ||||||
Sbjct: 9732 cccctcaccgaggctgatcgcaggggagcagcacccacagtcagcaccgagaggacctca 9673
Query: 244 gggtccagcgacatcaacccatcaagcactggtcctctggggaacttgagccccctcctc 303
|||||||||||| ||||||| ||||| ||||| |||| ||||||||||||| |||||||
Sbjct: 9672 gggtccagcgacgtcaacccgtcaagtgctggtgctctagggaacttgagccacctcctc 9613
Query: 304 agcgagacggctcaatcatcaatgctgatgcccgtgtacgacaagaatcgtgctgaaaca 363
|||||||| || ||||||||||||||| |||| ||||| || ||||||| |||||||
Sbjct: 9612 agcgagacagcacaatcatcaatgctgctgccggtgtatgataagaatcaccctgaaact 9553
Query: 364 ccaaacttggcacgccctaagctgccaccaaaggagctgttcctggagcagcttactgct 423
||| |||| ||||||||||| |||||||||||||| |||| || || |||||||||||
Sbjct: 9552 gcaagcttgccacgccctaaggtgccaccaaaggagttgtttcttgaccagcttactgcc 9493
Query: 424 ggacacgagagtccatcaacctgccactcatcaggccaaactctctatttccctttc 480
|| |||||||| ||||||| |||| ||||||||| | ||| || ||||| ||||||
Sbjct: 9492 ggtcacgagagcccatcaagttgccgctcatcaggtccaaccctgtattttcctttc 9436
Score = 60.0 bits (30), Expect = 1e-006
Identities = 42/46 (91%)
Strand = Plus / Minus
Query: 22 gaagaagacctcatcatcgagctgcacgctgtcctcgggaacaggt 67
||||||||||||||||| ||||| || |||||||| ||||||||||
Sbjct: 9999 gaagaagacctcatcattgagctccatgctgtccttgggaacaggt 9954
>ref|NT_107216.1| Oryza sativa (japonica cultivar-group)
Length = 2910826
Score = 375 bits (189), Expect = e-101
Identities = 360/417 (86%)
Strand = Plus / Plus
Query: 64 aggtggtctcaaattgcagcgcagctgccagggaggactgataatgagatcaagaatcta 123
||||||||||| |||||||| |||||||| ||||||||||| || ||||||||||||||
Sbjct: 1343889 aggtggtctcagattgcagctcagctgcctgggaggactgacaacgagatcaagaatctc 1343948
Query: 124 tggaactcgtgcatcaagaagaagctgaggcagaaaggcattgatcccaacacccacaag 183
||||| || ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 1343949 tggaattcttgcatcaagaagaagctccggcagaaaggcattgatcccaacacccacaag 1344008
Query: 184 ccacttactgaggctgatcacggcggtgcagctcccaccatcagcaccgagagaacctca 243
|| || || |||||||||| | | || ||||| ||||| ||||||||||||| ||||||
Sbjct: 1344009 cccctcaccgaggctgatcgcaggggagcagcacccacagtcagcaccgagaggacctca 1344068
Query: 244 gggtccagcgacatcaacccatcaagcactggtcctctggggaacttgagccccctcctc 303
|||||||||||| ||||||| ||||| ||||| |||| ||||||||||||| |||||||
Sbjct: 1344069 gggtccagcgacgtcaacccgtcaagtgctggtgctctagggaacttgagccacctcctc 1344128
Query: 304 agcgagacggctcaatcatcaatgctgatgcccgtgtacgacaagaatcgtgctgaaaca 363
|||||||| || ||||||||||||||| |||| ||||| || ||||||| |||||||
Sbjct: 1344129 agcgagacagcacaatcatcaatgctgctgccggtgtatgataagaatcaccctgaaact 1344188
Query: 364 ccaaacttggcacgccctaagctgccaccaaaggagctgttcctggagcagcttactgct 423
||| |||| ||||||||||| |||||||||||||| |||| || || |||||||||||
Sbjct: 1344189 gcaagcttgccacgccctaaggtgccaccaaaggagttgtttcttgaccagcttactgcc 1344248
Query: 424 ggacacgagagtccatcaacctgccactcatcaggccaaactctctatttccctttc 480
|| |||||||| ||||||| |||| ||||||||| | ||| || ||||| ||||||
Sbjct: 1344249 ggtcacgagagcccatcaagttgccgctcatcaggtccaaccctgtattttcctttc 1344305
Score = 60.0 bits (30), Expect = 1e-006
Identities = 42/46 (91%)
Strand = Plus / Plus
Query: 22 gaagaagacctcatcatcgagctgcacgctgtcctcgggaacaggt 67
||||||||||||||||| ||||| || |||||||| ||||||||||
Sbjct: 1343742 gaagaagacctcatcattgagctccatgctgtccttgggaacaggt 1343787
>gb|CH401191.1| Oryza sativa (japonica cultivar-group) chromosome 5 scaffold000028 genomic
scaffold, whole genome shotgun sequence
Length = 7678539
Score = 375 bits (189), Expect = e-101
Identities = 360/417 (86%)
Strand = Plus / Plus
Query: 64 aggtggtctcaaattgcagcgcagctgccagggaggactgataatgagatcaagaatcta 123
||||||||||| |||||||| |||||||| ||||||||||| || ||||||||||||||
Sbjct: 2289685 aggtggtctcagattgcagctcagctgcctgggaggactgacaacgagatcaagaatctc 2289744
Query: 124 tggaactcgtgcatcaagaagaagctgaggcagaaaggcattgatcccaacacccacaag 183
||||| || ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 2289745 tggaattcttgcatcaagaagaagctccggcagaaaggcattgatcccaacacccacaag 2289804
Query: 184 ccacttactgaggctgatcacggcggtgcagctcccaccatcagcaccgagagaacctca 243
|| || || |||||||||| | | || ||||| ||||| ||||||||||||| ||||||
Sbjct: 2289805 cccctcaccgaggctgatcgcaggggagcagcacccacagtcagcaccgagaggacctca 2289864
Query: 244 gggtccagcgacatcaacccatcaagcactggtcctctggggaacttgagccccctcctc 303
|||||||||||| ||||||| ||||| ||||| |||| ||||||||||||| |||||||
Sbjct: 2289865 gggtccagcgacgtcaacccgtcaagtgctggtgctctagggaacttgagccacctcctc 2289924
Query: 304 agcgagacggctcaatcatcaatgctgatgcccgtgtacgacaagaatcgtgctgaaaca 363
|||||||| || ||||||||||||||| |||| ||||| || ||||||| |||||||
Sbjct: 2289925 agcgagacagcacaatcatcaatgctgctgccggtgtatgataagaatcaccctgaaact 2289984
Query: 364 ccaaacttggcacgccctaagctgccaccaaaggagctgttcctggagcagcttactgct 423
||| |||| ||||||||||| |||||||||||||| |||| || || |||||||||||
Sbjct: 2289985 gcaagcttgccacgccctaaggtgccaccaaaggagttgtttcttgaccagcttactgcc 2290044
Query: 424 ggacacgagagtccatcaacctgccactcatcaggccaaactctctatttccctttc 480
|| |||||||| ||||||| |||| ||||||||| | ||| || ||||| ||||||
Sbjct: 2290045 ggtcacgagagcccatcaagttgccgctcatcaggtccaaccctgtattttcctttc 2290101
Score = 60.0 bits (30), Expect = 1e-006
Identities = 42/46 (91%)
Strand = Plus / Plus
Query: 22 gaagaagacctcatcatcgagctgcacgctgtcctcgggaacaggt 67
||||||||||||||||| ||||| || |||||||| ||||||||||
Sbjct: 2289538 gaagaagacctcatcattgagctccatgctgtccttgggaacaggt 2289583
>gb|CM000142.1| Oryza sativa (japonica cultivar-group) chromosome 5, whole genome shotgun
sequence
Length = 29309110
Score = 375 bits (189), Expect = e-101
Identities = 360/417 (86%)
Strand = Plus / Plus
Query: 64 aggtggtctcaaattgcagcgcagctgccagggaggactgataatgagatcaagaatcta 123
||||||||||| |||||||| |||||||| ||||||||||| || ||||||||||||||
Sbjct: 2289685 aggtggtctcagattgcagctcagctgcctgggaggactgacaacgagatcaagaatctc 2289744
Query: 124 tggaactcgtgcatcaagaagaagctgaggcagaaaggcattgatcccaacacccacaag 183
||||| || ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 2289745 tggaattcttgcatcaagaagaagctccggcagaaaggcattgatcccaacacccacaag 2289804
Query: 184 ccacttactgaggctgatcacggcggtgcagctcccaccatcagcaccgagagaacctca 243
|| || || |||||||||| | | || ||||| ||||| ||||||||||||| ||||||
Sbjct: 2289805 cccctcaccgaggctgatcgcaggggagcagcacccacagtcagcaccgagaggacctca 2289864
Query: 244 gggtccagcgacatcaacccatcaagcactggtcctctggggaacttgagccccctcctc 303
|||||||||||| ||||||| ||||| ||||| |||| ||||||||||||| |||||||
Sbjct: 2289865 gggtccagcgacgtcaacccgtcaagtgctggtgctctagggaacttgagccacctcctc 2289924
Query: 304 agcgagacggctcaatcatcaatgctgatgcccgtgtacgacaagaatcgtgctgaaaca 363
|||||||| || ||||||||||||||| |||| ||||| || ||||||| |||||||
Sbjct: 2289925 agcgagacagcacaatcatcaatgctgctgccggtgtatgataagaatcaccctgaaact 2289984
Query: 364 ccaaacttggcacgccctaagctgccaccaaaggagctgttcctggagcagcttactgct 423
||| |||| ||||||||||| |||||||||||||| |||| || || |||||||||||
Sbjct: 2289985 gcaagcttgccacgccctaaggtgccaccaaaggagttgtttcttgaccagcttactgcc 2290044
Query: 424 ggacacgagagtccatcaacctgccactcatcaggccaaactctctatttccctttc 480
|| |||||||| ||||||| |||| ||||||||| | ||| || ||||| ||||||
Sbjct: 2290045 ggtcacgagagcccatcaagttgccgctcatcaggtccaaccctgtattttcctttc 2290101
Score = 60.0 bits (30), Expect = 1e-006
Identities = 42/46 (91%)
Strand = Plus / Plus
Query: 22 gaagaagacctcatcatcgagctgcacgctgtcctcgggaacaggt 67
||||||||||||||||| ||||| || |||||||| ||||||||||
Sbjct: 2289538 gaagaagacctcatcattgagctccatgctgtccttgggaacaggt 2289583
Score = 42.1 bits (21), Expect = 0.27
Identities = 48/57 (84%)
Strand = Plus / Minus
Query: 63 caggtggtctcaaattgcagcgcagctgccagggaggactgataatgagatcaagaa 119
||||||||||| || || | ||||||||| |||||||| || || |||||||||||
Sbjct: 20611839 caggtggtctctgatcgccgggcagctgccggggaggacggacaacgagatcaagaa 20611783
Score = 40.1 bits (20), Expect = 1.1
Identities = 35/40 (87%)
Strand = Plus / Plus
Query: 28 gacctcatcatcgagctgcacgctgtcctcgggaacaggt 67
||||||||| ||| |||||||| |||||||||||||||
Sbjct: 26502243 gacctcatcgtcgcgctgcacgagatcctcgggaacaggt 26502282
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
sequence
Length = 29737217
Score = 375 bits (189), Expect = e-101
Identities = 360/417 (86%)
Strand = Plus / Plus
Query: 64 aggtggtctcaaattgcagcgcagctgccagggaggactgataatgagatcaagaatcta 123
||||||||||| |||||||| |||||||| ||||||||||| || ||||||||||||||
Sbjct: 2253502 aggtggtctcagattgcagctcagctgcctgggaggactgacaacgagatcaagaatctc 2253561
Query: 124 tggaactcgtgcatcaagaagaagctgaggcagaaaggcattgatcccaacacccacaag 183
||||| || ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 2253562 tggaattcttgcatcaagaagaagctccggcagaaaggcattgatcccaacacccacaag 2253621
Query: 184 ccacttactgaggctgatcacggcggtgcagctcccaccatcagcaccgagagaacctca 243
|| || || |||||||||| | | || ||||| ||||| ||||||||||||| ||||||
Sbjct: 2253622 cccctcaccgaggctgatcgcaggggagcagcacccacagtcagcaccgagaggacctca 2253681
Query: 244 gggtccagcgacatcaacccatcaagcactggtcctctggggaacttgagccccctcctc 303
|||||||||||| ||||||| ||||| ||||| |||| ||||||||||||| |||||||
Sbjct: 2253682 gggtccagcgacgtcaacccgtcaagtgctggtgctctagggaacttgagccacctcctc 2253741
Query: 304 agcgagacggctcaatcatcaatgctgatgcccgtgtacgacaagaatcgtgctgaaaca 363
|||||||| || ||||||||||||||| |||| ||||| || ||||||| |||||||
Sbjct: 2253742 agcgagacagcacaatcatcaatgctgctgccggtgtatgataagaatcaccctgaaact 2253801
Query: 364 ccaaacttggcacgccctaagctgccaccaaaggagctgttcctggagcagcttactgct 423
||| |||| ||||||||||| |||||||||||||| |||| || || |||||||||||
Sbjct: 2253802 gcaagcttgccacgccctaaggtgccaccaaaggagttgtttcttgaccagcttactgcc 2253861
Query: 424 ggacacgagagtccatcaacctgccactcatcaggccaaactctctatttccctttc 480
|| |||||||| ||||||| |||| ||||||||| | ||| || ||||| ||||||
Sbjct: 2253862 ggtcacgagagcccatcaagttgccgctcatcaggtccaaccctgtattttcctttc 2253918
Score = 60.0 bits (30), Expect = 1e-006
Identities = 42/46 (91%)
Strand = Plus / Plus
Query: 22 gaagaagacctcatcatcgagctgcacgctgtcctcgggaacaggt 67
||||||||||||||||| ||||| || |||||||| ||||||||||
Sbjct: 2253355 gaagaagacctcatcattgagctccatgctgtccttgggaacaggt 2253400
Score = 42.1 bits (21), Expect = 0.27
Identities = 48/57 (84%)
Strand = Plus / Minus
Query: 63 caggtggtctcaaattgcagcgcagctgccagggaggactgataatgagatcaagaa 119
||||||||||| || || | ||||||||| |||||||| || || |||||||||||
Sbjct: 20955841 caggtggtctctgatcgccgggcagctgccggggaggacggacaacgagatcaagaa 20955785
Score = 40.1 bits (20), Expect = 1.1
Identities = 35/40 (87%)
Strand = Plus / Plus
Query: 28 gacctcatcatcgagctgcacgctgtcctcgggaacaggt 67
||||||||| ||| |||||||| |||||||||||||||
Sbjct: 26781181 gacctcatcgtcgcgctgcacgagatcctcgggaacaggt 26781220
>gb|CB656567.1|CB656567 OSJNEc11B07.f OSJNEc Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEc11B07 5', mRNA sequence
Length = 806
Score = 355 bits (179), Expect = 1e-095
Identities = 293/331 (88%)
Strand = Plus / Plus
Query: 22 gaagaagacctcatcatcgagctgcacgctgtcctcgggaacaggtggtctcaaattgca 81
||||||||||||||||| ||||| || |||||||| ||||||||||||||||| ||||||
Sbjct: 462 gaagaagacctcatcattgagctccatgctgtccttgggaacaggtggtctcagattgca 521
Query: 82 gcgcagctgccagggaggactgataatgagatcaagaatctatggaactcgtgcatcaag 141
|| |||||||| ||||||||||| || |||||||||||||| ||||| || |||||||||
Sbjct: 522 gctcagctgcctgggaggactgacaacgagatcaagaatctctggaattcttgcatcaag 581
Query: 142 aagaagctgaggcagaaaggcattgatcccaacacccacaagccacttactgaggctgat 201
|||||||| |||||||||||||||||||||||||||||||||| || || |||||||||
Sbjct: 582 aagaagctccggcagaaaggcattgatcccaacacccacaagcccctcaccgaggctgat 641
Query: 202 cacggcggtgcagctcccaccatcagcaccgagagaacctcagggtccagcgacatcaac 261
| | | || ||||| ||||| ||||||||||||| |||||||||||||||||| |||||
Sbjct: 642 cgcaggggagcagcacccacagtcagcaccgagaggacctcagggtccagcgacgtcaac 701
Query: 262 ccatcaagcactggtcctctggggaacttgagccccctcctcagcgagacggctcaatca 321
|| ||||| ||||| |||| ||||||||||||| ||||||||||||||| || ||||||
Sbjct: 702 ccgtcaagtgctggtgctctagggaacttgagccacctcctcagcgagacagcacaatca 761
Query: 322 tcaatgctgatgcccgtgtacgacaagaatc 352
||||||||| |||| ||||| || |||||||
Sbjct: 762 tcaatgctgctgccggtgtatgataagaatc 792
>gb|AQ861558.1|AQ861558 nbeb0017G17f CUGI Rice BAC Library (EcoRI) Oryza sativa (japonica
cultivar-group) genomic clone nbeb0017G17f, DNA sequence
Length = 829
Score = 278 bits (140), Expect = 3e-072
Identities = 296/348 (85%)
Strand = Plus / Plus
Query: 133 tgcatcaagaagaagctgaggcagaaaggcattgatcccaacacccacaagccacttact 192
||||||||||||||||| |||||||||||||||||||||||||||||||||| || ||
Sbjct: 47 tgcatcaagaagaagctccggcagaaaggcattgatcccaacacccacaagcccctcacc 106
Query: 193 gaggctgatcacggcggtgcagctcccaccatcagcaccgagagaacctcagggtccagc 252
| |||||| | | || ||||| ||||| ||||||||||||| |||||||||||||||
Sbjct: 107 gtttctgatcgcaggggagcagcacccacagtcagcaccgagaggacctcagggtccagc 166
Query: 253 gacatcaacccatcaagcactggtcctctggggaacttgagccccctcctcagcgagacg 312
||| ||||||| ||||| ||||| |||| ||||||||||||| |||||||||||||||
Sbjct: 167 gacgtcaacccgtcaagtgctggtgctctagggaacttgagccacctcctcagcgagaca 226
Query: 313 gctcaatcatcaatgctgatgcccgtgtacgacaagaatcgtgctgaaacaccaaacttg 372
|| ||||||||||||||| |||| ||||| || ||||||| ||||||| ||| ||||
Sbjct: 227 gcacaatcatcaatgctgctgccggtgtatgataagaatcaccctgaaactgcaagcttg 286
Query: 373 gcacgccctaagctgccaccaaaggagctgttcctggagcagcttactgctggacacgag 432
||||||||||| |||||||||||||| |||| || || ||||||||||| || ||||||
Sbjct: 287 ccacgccctaaggtgccaccaaaggagttgtttcttgaccagcttactgccggtcacgag 346
Query: 433 agtccatcaacctgccactcatcaggccaaactctctatttccctttc 480
|| ||||||| |||| ||||||||| | ||| || ||||| ||||||
Sbjct: 347 agcccatcaagttgccgctcatcaggtccaaccctgtattttcctttc 394
>gb|AQ256517.1|AQ256517 nbxb0016M14f CUGI Rice BAC Library Oryza sativa (japonica
cultivar-group) genomic clone nbxb0016M14f, DNA sequence
Length = 691
Score = 238 bits (120), Expect = 2e-060
Identities = 213/244 (87%)
Strand = Plus / Minus
Query: 109 gagatcaagaatctatggaactcgtgcatcaagaagaagctgaggcagaaaggcattgat 168
|||||||||||||| || || || ||||||||||||||| | |||||||||||||||||
Sbjct: 256 gagatcaagaatctctgcaattcatgcatcaagaagaagatccggcagaaaggcattgat 197
Query: 169 cccaacacccacaagccacttactgaggctgatcacggcggtgcagctcccaccatcagc 228
||||||||||||||||| || || |||||||||| | | || ||||| ||||| |||||
Sbjct: 196 cccaacacccacaagcccctcaccgaggctgatcgcaggggagcagcacccacagtcagc 137
Query: 229 accgagagaacctcagggtccagcgacatcaacccatcaagcactggtcctctggggaac 288
|||||||| |||||||||||||||||| ||||||| ||||| ||||| |||| ||||||
Sbjct: 136 accgagaggacctcagggtccagcgacgtcaacccgtcaagtgctggtgctctagggaac 77
Query: 289 ttgagccccctcctcagcgagacggctcaatcatcaatgctgatgcccgtgtacgacaag 348
||||||| ||||||||||||||| || ||||||||||||||| |||| ||||| || |||
Sbjct: 76 ttgagccacctcctcagcgagacagcacaatcatcaatgctgctgccggtgtatgataag 17
Query: 349 aatc 352
||||
Sbjct: 16 aatc 13
>dbj|AK111803.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013087D08, full
insert sequence
Length = 1699
Score = 161 bits (81), Expect = 4e-037
Identities = 156/181 (86%)
Strand = Plus / Plus
Query: 22 gaagaagacctcatcatcgagctgcacgctgtcctcgggaacaggtggtctcaaattgca 81
||||| ||||||||| | ||||| || ||||| || || |||||||||||||||||||||
Sbjct: 495 gaagaggacctcatcgttgagctccatgctgttctgggaaacaggtggtctcaaattgca 554
Query: 82 gcgcagctgccagggaggactgataatgagatcaagaatctatggaactcgtgcatcaag 141
| | |||||| || || ||||| ||||||||||||||||| ||||| || |||||||||
Sbjct: 555 acacggctgcctggaagaactgacaatgagatcaagaatctctggaattcatgcatcaag 614
Query: 142 aagaagctgaggcagaaaggcattgatcccaacacccacaagccacttactgaggctgat 201
||||||||| |||||||||||||||| || |||||||||||||| ||| | |||| ||||
Sbjct: 615 aagaagctgcggcagaaaggcattgacccaaacacccacaagccccttgccgaggttgat 674
Query: 202 c 202
|
Sbjct: 675 c 675
Score = 38.2 bits (19), Expect = 4.2
Identities = 34/39 (87%)
Strand = Plus / Plus
Query: 286 aacttgagccccctcctcagcgagacggctcaatcatca 324
|||||||||| || || ||||||||||| |||||||||
Sbjct: 759 aacttgagccatcttctgagcgagacggcgcaatcatca 797
>ref|XM_462838.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 1287
Score = 161 bits (81), Expect = 4e-037
Identities = 156/181 (86%)
Strand = Plus / Plus
Query: 22 gaagaagacctcatcatcgagctgcacgctgtcctcgggaacaggtggtctcaaattgca 81
||||| ||||||||| | ||||| || ||||| || || |||||||||||||||||||||
Sbjct: 220 gaagaggacctcatcgttgagctccatgctgttctgggaaacaggtggtctcaaattgca 279
Query: 82 gcgcagctgccagggaggactgataatgagatcaagaatctatggaactcgtgcatcaag 141
| | |||||| || || ||||| ||||||||||||||||| ||||| || |||||||||
Sbjct: 280 acacggctgcctggaagaactgacaatgagatcaagaatctctggaattcatgcatcaag 339
Query: 142 aagaagctgaggcagaaaggcattgatcccaacacccacaagccacttactgaggctgat 201
||||||||| |||||||||||||||| || |||||||||||||| ||| | |||| ||||
Sbjct: 340 aagaagctgcggcagaaaggcattgacccaaacacccacaagccccttgccgaggttgat 399
Query: 202 c 202
|
Sbjct: 400 c 400
Score = 38.2 bits (19), Expect = 4.2
Identities = 34/39 (87%)
Strand = Plus / Plus
Query: 286 aacttgagccccctcctcagcgagacggctcaatcatca 324
|||||||||| || || ||||||||||| |||||||||
Sbjct: 484 aacttgagccatcttctgagcgagacggcgcaatcatca 522
>emb|AJ495786.1|OSA495786 Oryza sativa (japonica cultivar-group) mRNA for MYB18 protein
Length = 1760
Score = 161 bits (81), Expect = 4e-037
Identities = 156/181 (86%)
Strand = Plus / Plus
Query: 22 gaagaagacctcatcatcgagctgcacgctgtcctcgggaacaggtggtctcaaattgca 81
||||| ||||||||| | ||||| || ||||| || || |||||||||||||||||||||
Sbjct: 490 gaagaggacctcatcgttgagctccatgctgttctgggaaacaggtggtctcaaattgca 549
Query: 82 gcgcagctgccagggaggactgataatgagatcaagaatctatggaactcgtgcatcaag 141
| | |||||| || || ||||| ||||||||||||||||| ||||| || |||||||||
Sbjct: 550 acacggctgcctggaagaactgacaatgagatcaagaatctctggaattcatgcatcaag 609
Query: 142 aagaagctgaggcagaaaggcattgatcccaacacccacaagccacttactgaggctgat 201
||||||||| |||||||||||||||| || |||||||||||||| ||| | |||| ||||
Sbjct: 610 aagaagctgcggcagaaaggcattgacccaaacacccacaagccccttgccgaggttgat 669
Query: 202 c 202
|
Sbjct: 670 c 670
Score = 38.2 bits (19), Expect = 4.2
Identities = 34/39 (87%)
Strand = Plus / Plus
Query: 286 aacttgagccccctcctcagcgagacggctcaatcatca 324
|||||||||| || || ||||||||||| |||||||||
Sbjct: 754 aacttgagccatcttctgagcgagacggcgcaatcatca 792
>dbj|AP003018.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
clone:OSJNBa0004B13
Length = 142268
Score = 143 bits (72), Expect = 1e-031
Identities = 123/140 (87%)
Strand = Plus / Minus
Query: 63 caggtggtctcaaattgcagcgcagctgccagggaggactgataatgagatcaagaatct 122
||||||||||||||||||| | | |||||| || || ||||| |||||||||||||||||
Sbjct: 141620 caggtggtctcaaattgcaacacggctgcctggaagaactgacaatgagatcaagaatct 141561
Query: 123 atggaactcgtgcatcaagaagaagctgaggcagaaaggcattgatcccaacacccacaa 182
||||| || |||||||||||||||||| |||||||||||||||| || |||||||||||
Sbjct: 141560 ctggaattcatgcatcaagaagaagctgcggcagaaaggcattgacccaaacacccacaa 141501
Query: 183 gccacttactgaggctgatc 202
||| ||| | |||| |||||
Sbjct: 141500 gccccttgccgaggttgatc 141481
Score = 38.2 bits (19), Expect = 4.2
Identities = 34/39 (87%)
Strand = Plus / Minus
Query: 286 aacttgagccccctcctcagcgagacggctcaatcatca 324
|||||||||| || || ||||||||||| |||||||||
Sbjct: 141397 aacttgagccatcttctgagcgagacggcgcaatcatca 141359
>gb|AACV01000735.1| Oryza sativa (japonica cultivar-group) chromosome 1 Ctg000735, whole
genome shotgun sequence
Length = 53069
Score = 143 bits (72), Expect = 1e-031
Identities = 123/140 (87%)
Strand = Plus / Minus
Query: 63 caggtggtctcaaattgcagcgcagctgccagggaggactgataatgagatcaagaatct 122
||||||||||||||||||| | | |||||| || || ||||| |||||||||||||||||
Sbjct: 31076 caggtggtctcaaattgcaacacggctgcctggaagaactgacaatgagatcaagaatct 31017
Query: 123 atggaactcgtgcatcaagaagaagctgaggcagaaaggcattgatcccaacacccacaa 182
||||| || |||||||||||||||||| |||||||||||||||| || |||||||||||
Sbjct: 31016 ctggaattcatgcatcaagaagaagctgcggcagaaaggcattgacccaaacacccacaa 30957
Query: 183 gccacttactgaggctgatc 202
||| ||| | |||| |||||
Sbjct: 30956 gccccttgccgaggttgatc 30937
Score = 38.2 bits (19), Expect = 4.2
Identities = 34/39 (87%)
Strand = Plus / Minus
Query: 286 aacttgagccccctcctcagcgagacggctcaatcatca 324
|||||||||| || || ||||||||||| |||||||||
Sbjct: 30853 aacttgagccatcttctgagcgagacggcgcaatcatca 30815
>dbj|BA000010.8| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43342410
Score = 143 bits (72), Expect = 1e-031
Identities = 123/140 (87%)
Strand = Plus / Minus
Query: 63 caggtggtctcaaattgcagcgcagctgccagggaggactgataatgagatcaagaatct 122
||||||||||||||||||| | | |||||| || || ||||| |||||||||||||||||
Sbjct: 10214803 caggtggtctcaaattgcaacacggctgcctggaagaactgacaatgagatcaagaatct 10214744
Query: 123 atggaactcgtgcatcaagaagaagctgaggcagaaaggcattgatcccaacacccacaa 182
||||| || |||||||||||||||||| |||||||||||||||| || |||||||||||
Sbjct: 10214743 ctggaattcatgcatcaagaagaagctgcggcagaaaggcattgacccaaacacccacaa 10214684
Query: 183 gccacttactgaggctgatc 202
||| ||| | |||| |||||
Sbjct: 10214683 gccccttgccgaggttgatc 10214664
Score = 69.9 bits (35), Expect = 1e-009
Identities = 74/87 (85%)
Strand = Plus / Minus
Query: 63 caggtggtctcaaattgcagcgcagctgccagggaggactgataatgagatcaagaatct 122
||||||||| || ||||| ||||||||||| || |||| || || ||||||||||| |
Sbjct: 20316522 caggtggtcccagattgcggcgcagctgcccggccggacggacaacgagatcaagaactt 20316463
Query: 123 atggaactcgtgcatcaagaagaagct 149
|||||||||||| |||||||||||||
Sbjct: 20316462 ctggaactcgtgcctcaagaagaagct 20316436
Score = 54.0 bits (27), Expect = 7e-005
Identities = 99/123 (80%)
Strand = Plus / Minus
Query: 63 caggtggtctcaaattgcagcgcagctgccagggaggactgataatgagatcaagaatct 122
||||||||| ||||| || |||| |||| |||||||| || || ||||||||||| |
Sbjct: 29207064 caggtggtcgcaaatcgcgtcgcacttgccggggaggacggacaacgagatcaagaactt 29207005
Query: 123 atggaactcgtgcatcaagaagaagctgaggcagaaaggcattgatcccaacacccacaa 182
|||||| ||| |||||||||||||||||||| ||||| || |||| ||||||| |
Sbjct: 29207004 ctggaacagctgcctcaagaagaagctgaggcagcgcggcatcgaccccagcacccacca 29206945
Query: 183 gcc 185
|||
Sbjct: 29206944 gcc 29206942
Score = 40.1 bits (20), Expect = 1.1
Identities = 32/36 (88%)
Strand = Plus / Plus
Query: 84 gcagctgccagggaggactgataatgagatcaagaa 119
||||||||| |||||||| || || |||||||||||
Sbjct: 38006642 gcagctgccggggaggacggacaacgagatcaagaa 38006677
Score = 38.2 bits (19), Expect = 4.2
Identities = 34/39 (87%)
Strand = Plus / Minus
Query: 286 aacttgagccccctcctcagcgagacggctcaatcatca 324
|||||||||| || || ||||||||||| |||||||||
Sbjct: 10214580 aacttgagccatcttctgagcgagacggcgcaatcatca 10214542
>ref|NT_036323.3| Oryza sativa (japonica cultivar-group)
Length = 1440362
Score = 143 bits (72), Expect = 1e-031
Identities = 123/140 (87%)
Strand = Plus / Minus
Query: 63 caggtggtctcaaattgcagcgcagctgccagggaggactgataatgagatcaagaatct 122
||||||||||||||||||| | | |||||| || || ||||| |||||||||||||||||
Sbjct: 164490 caggtggtctcaaattgcaacacggctgcctggaagaactgacaatgagatcaagaatct 164431
Query: 123 atggaactcgtgcatcaagaagaagctgaggcagaaaggcattgatcccaacacccacaa 182
||||| || |||||||||||||||||| |||||||||||||||| || |||||||||||
Sbjct: 164430 ctggaattcatgcatcaagaagaagctgcggcagaaaggcattgacccaaacacccacaa 164371
Query: 183 gccacttactgaggctgatc 202
||| ||| | |||| |||||
Sbjct: 164370 gccccttgccgaggttgatc 164351
Score = 38.2 bits (19), Expect = 4.2
Identities = 34/39 (87%)
Strand = Plus / Minus
Query: 286 aacttgagccccctcctcagcgagacggctcaatcatca 324
|||||||||| || || ||||||||||| |||||||||
Sbjct: 164267 aacttgagccatcttctgagcgagacggcgcaatcatca 164229
>dbj|AP003020.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
clone:P0498A12
Length = 159749
Score = 143 bits (72), Expect = 1e-031
Identities = 123/140 (87%)
Strand = Plus / Minus
Query: 63 caggtggtctcaaattgcagcgcagctgccagggaggactgataatgagatcaagaatct 122
||||||||||||||||||| | | |||||| || || ||||| |||||||||||||||||
Sbjct: 82335 caggtggtctcaaattgcaacacggctgcctggaagaactgacaatgagatcaagaatct 82276
Query: 123 atggaactcgtgcatcaagaagaagctgaggcagaaaggcattgatcccaacacccacaa 182
||||| || |||||||||||||||||| |||||||||||||||| || |||||||||||
Sbjct: 82275 ctggaattcatgcatcaagaagaagctgcggcagaaaggcattgacccaaacacccacaa 82216
Query: 183 gccacttactgaggctgatc 202
||| ||| | |||| |||||
Sbjct: 82215 gccccttgccgaggttgatc 82196
Score = 38.2 bits (19), Expect = 4.2
Identities = 34/39 (87%)
Strand = Plus / Minus
Query: 286 aacttgagccccctcctcagcgagacggctcaatcatca 324
|||||||||| || || ||||||||||| |||||||||
Sbjct: 82112 aacttgagccatcttctgagcgagacggcgcaatcatca 82074
>gb|CH401164.1| Oryza sativa (japonica cultivar-group) chromosome 1 scaffold000001 genomic
scaffold, whole genome shotgun sequence
Length = 11616395
Score = 143 bits (72), Expect = 1e-031
Identities = 123/140 (87%)
Strand = Plus / Minus
Query: 63 caggtggtctcaaattgcagcgcagctgccagggaggactgataatgagatcaagaatct 122
||||||||||||||||||| | | |||||| || || ||||| |||||||||||||||||
Sbjct: 10344200 caggtggtctcaaattgcaacacggctgcctggaagaactgacaatgagatcaagaatct 10344141
Query: 123 atggaactcgtgcatcaagaagaagctgaggcagaaaggcattgatcccaacacccacaa 182
||||| || |||||||||||||||||| |||||||||||||||| || |||||||||||
Sbjct: 10344140 ctggaattcatgcatcaagaagaagctgcggcagaaaggcattgacccaaacacccacaa 10344081
Query: 183 gccacttactgaggctgatc 202
||| ||| | |||| |||||
Sbjct: 10344080 gccccttgccgaggttgatc 10344061
Score = 38.2 bits (19), Expect = 4.2
Identities = 34/39 (87%)
Strand = Plus / Minus
Query: 286 aacttgagccccctcctcagcgagacggctcaatcatca 324
|||||||||| || || ||||||||||| |||||||||
Sbjct: 10343977 aacttgagccatcttctgagcgagacggcgcaatcatca 10343939
>gb|CM000138.1| Oryza sativa (japonica cultivar-group) chromosome 1, whole genome shotgun
sequence
Length = 42596331
Score = 143 bits (72), Expect = 1e-031
Identities = 123/140 (87%)
Strand = Plus / Minus
Query: 63 caggtggtctcaaattgcagcgcagctgccagggaggactgataatgagatcaagaatct 122
||||||||||||||||||| | | |||||| || || ||||| |||||||||||||||||
Sbjct: 10344200 caggtggtctcaaattgcaacacggctgcctggaagaactgacaatgagatcaagaatct 10344141
Query: 123 atggaactcgtgcatcaagaagaagctgaggcagaaaggcattgatcccaacacccacaa 182
||||| || |||||||||||||||||| |||||||||||||||| || |||||||||||
Sbjct: 10344140 ctggaattcatgcatcaagaagaagctgcggcagaaaggcattgacccaaacacccacaa 10344081
Query: 183 gccacttactgaggctgatc 202
||| ||| | |||| |||||
Sbjct: 10344080 gccccttgccgaggttgatc 10344061
Score = 69.9 bits (35), Expect = 1e-009
Identities = 74/87 (85%)
Strand = Plus / Minus
Query: 63 caggtggtctcaaattgcagcgcagctgccagggaggactgataatgagatcaagaatct 122
||||||||| || ||||| ||||||||||| || |||| || || ||||||||||| |
Sbjct: 19900386 caggtggtcccagattgcggcgcagctgcccggccggacggacaacgagatcaagaactt 19900327
Query: 123 atggaactcgtgcatcaagaagaagct 149
|||||||||||| |||||||||||||
Sbjct: 19900326 ctggaactcgtgcctcaagaagaagct 19900300
Score = 54.0 bits (27), Expect = 7e-005
Identities = 99/123 (80%)
Strand = Plus / Minus
Query: 63 caggtggtctcaaattgcagcgcagctgccagggaggactgataatgagatcaagaatct 122
||||||||| ||||| || |||| |||| |||||||| || || ||||||||||| |
Sbjct: 28780411 caggtggtcgcaaatcgcgtcgcacttgccggggaggacggacaacgagatcaagaactt 28780352
Query: 123 atggaactcgtgcatcaagaagaagctgaggcagaaaggcattgatcccaacacccacaa 182
|||||| ||| |||||||||||||||||||| ||||| || |||| ||||||| |
Sbjct: 28780351 ctggaacagctgcctcaagaagaagctgaggcagcgcggcatcgaccccagcacccacca 28780292
Query: 183 gcc 185
|||
Sbjct: 28780291 gcc 28780289
Score = 40.1 bits (20), Expect = 1.1
Identities = 32/36 (88%)
Strand = Plus / Plus
Query: 84 gcagctgccagggaggactgataatgagatcaagaa 119
||||||||| |||||||| || || |||||||||||
Sbjct: 37385118 gcagctgccggggaggacggacaacgagatcaagaa 37385153
Score = 38.2 bits (19), Expect = 4.2
Identities = 34/39 (87%)
Strand = Plus / Minus
Query: 286 aacttgagccccctcctcagcgagacggctcaatcatca 324
|||||||||| || || ||||||||||| |||||||||
Sbjct: 10343977 aacttgagccatcttctgagcgagacggcgcaatcatca 10343939
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43261740
Score = 143 bits (72), Expect = 1e-031
Identities = 123/140 (87%)
Strand = Plus / Minus
Query: 63 caggtggtctcaaattgcagcgcagctgccagggaggactgataatgagatcaagaatct 122
||||||||||||||||||| | | |||||| || || ||||| |||||||||||||||||
Sbjct: 10217021 caggtggtctcaaattgcaacacggctgcctggaagaactgacaatgagatcaagaatct 10216962
Query: 123 atggaactcgtgcatcaagaagaagctgaggcagaaaggcattgatcccaacacccacaa 182
||||| || |||||||||||||||||| |||||||||||||||| || |||||||||||
Sbjct: 10216961 ctggaattcatgcatcaagaagaagctgcggcagaaaggcattgacccaaacacccacaa 10216902
Query: 183 gccacttactgaggctgatc 202
||| ||| | |||| |||||
Sbjct: 10216901 gccccttgccgaggttgatc 10216882
Score = 69.9 bits (35), Expect = 1e-009
Identities = 74/87 (85%)
Strand = Plus / Minus
Query: 63 caggtggtctcaaattgcagcgcagctgccagggaggactgataatgagatcaagaatct 122
||||||||| || ||||| ||||||||||| || |||| || || ||||||||||| |
Sbjct: 20237805 caggtggtcccagattgcggcgcagctgcccggccggacggacaacgagatcaagaactt 20237746
Query: 123 atggaactcgtgcatcaagaagaagct 149
|||||||||||| |||||||||||||
Sbjct: 20237745 ctggaactcgtgcctcaagaagaagct 20237719
Score = 54.0 bits (27), Expect = 7e-005
Identities = 99/123 (80%)
Strand = Plus / Minus
Query: 63 caggtggtctcaaattgcagcgcagctgccagggaggactgataatgagatcaagaatct 122
||||||||| ||||| || |||| |||| |||||||| || || ||||||||||| |
Sbjct: 29126394 caggtggtcgcaaatcgcgtcgcacttgccggggaggacggacaacgagatcaagaactt 29126335
Query: 123 atggaactcgtgcatcaagaagaagctgaggcagaaaggcattgatcccaacacccacaa 182
|||||| ||| |||||||||||||||||||| ||||| || |||| ||||||| |
Sbjct: 29126334 ctggaacagctgcctcaagaagaagctgaggcagcgcggcatcgaccccagcacccacca 29126275
Query: 183 gcc 185
|||
Sbjct: 29126274 gcc 29126272
Score = 40.1 bits (20), Expect = 1.1
Identities = 32/36 (88%)
Strand = Plus / Plus
Query: 84 gcagctgccagggaggactgataatgagatcaagaa 119
||||||||| |||||||| || || |||||||||||
Sbjct: 37925972 gcagctgccggggaggacggacaacgagatcaagaa 37926007
Score = 38.2 bits (19), Expect = 4.2
Identities = 34/39 (87%)
Strand = Plus / Minus
Query: 286 aacttgagccccctcctcagcgagacggctcaatcatca 324
|||||||||| || || ||||||||||| |||||||||
Sbjct: 10216798 aacttgagccatcttctgagcgagacggcgcaatcatca 10216760
>gb|AQ330326.1|AQ330326 nbxb0046P02f CUGI Rice BAC Library Oryza sativa (japonica
cultivar-group) genomic clone nbxb0046P02f, DNA sequence
Length = 554
Score = 85.7 bits (43), Expect = 2e-014
Identities = 91/107 (85%)
Strand = Plus / Plus
Query: 374 cacgccctaagctgccaccaaaggagctgttcctggagcagcttactgctggacacgaga 433
||||||||||| |||||||||||||| |||| || || ||||||||||| || |||||||
Sbjct: 2 cacgccctaaggtgccaccaaaggagttgtttcttgaccagcttactgccggtcacgaga 61
Query: 434 gtccatcaacctgccactcatcaggccaaactctctatttccctttc 480
| ||||||| |||| ||||||||| | ||| || ||||| ||||||
Sbjct: 62 gcccatcaagttgccgctcatcaggtccaaccctgtattttcctttc 108
>ref|NM_193333.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 1074
Score = 73.8 bits (37), Expect = 8e-011
Identities = 76/89 (85%)
Strand = Plus / Plus
Query: 61 aacaggtggtctcaaattgcagcgcagctgccagggaggactgataatgagatcaagaat 120
||||||||||| || ||||| ||||||||||| || |||| || || |||||||||||
Sbjct: 268 aacaggtggtcccagattgcggcgcagctgcccggccggacggacaacgagatcaagaac 327
Query: 121 ctatggaactcgtgcatcaagaagaagct 149
| |||||||||||| |||||||||||||
Sbjct: 328 ttctggaactcgtgcctcaagaagaagct 356
>gb|AACV01001493.1| Oryza sativa (japonica cultivar-group) chromosome 1 Ctg001493, whole
genome shotgun sequence
Length = 20984
Score = 69.9 bits (35), Expect = 1e-009
Identities = 74/87 (85%)
Strand = Plus / Minus
Query: 63 caggtggtctcaaattgcagcgcagctgccagggaggactgataatgagatcaagaatct 122
||||||||| || ||||| ||||||||||| || |||| || || ||||||||||| |
Sbjct: 7765 caggtggtcccagattgcggcgcagctgcccggccggacggacaacgagatcaagaactt 7706
Query: 123 atggaactcgtgcatcaagaagaagct 149
|||||||||||| |||||||||||||
Sbjct: 7705 ctggaactcgtgcctcaagaagaagct 7679
>ref|NT_079926.2| Oryza sativa (japonica cultivar-group)
Length = 8469246
Score = 69.9 bits (35), Expect = 1e-009
Identities = 74/87 (85%)
Strand = Plus / Minus
Query: 63 caggtggtctcaaattgcagcgcagctgccagggaggactgataatgagatcaagaatct 122
||||||||| || ||||| ||||||||||| || |||| || || ||||||||||| |
Sbjct: 3234754 caggtggtcccagattgcggcgcagctgcccggccggacggacaacgagatcaagaactt 3234695
Query: 123 atggaactcgtgcatcaagaagaagct 149
|||||||||||| |||||||||||||
Sbjct: 3234694 ctggaactcgtgcctcaagaagaagct 3234668
>dbj|AP004231.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
clone:OSJNBa0026J14
Length = 163496
Score = 69.9 bits (35), Expect = 1e-009
Identities = 74/87 (85%)
Strand = Plus / Minus
Query: 63 caggtggtctcaaattgcagcgcagctgccagggaggactgataatgagatcaagaatct 122
||||||||| || ||||| ||||||||||| || |||| || || ||||||||||| |
Sbjct: 3838 caggtggtcccagattgcggcgcagctgcccggccggacggacaacgagatcaagaactt 3779
Query: 123 atggaactcgtgcatcaagaagaagct 149
|||||||||||| |||||||||||||
Sbjct: 3778 ctggaactcgtgcctcaagaagaagct 3752
>dbj|AP004232.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
clone:OSJNBa0051H17
Length = 187471
Score = 69.9 bits (35), Expect = 1e-009
Identities = 74/87 (85%)
Strand = Plus / Minus
Query: 63 caggtggtctcaaattgcagcgcagctgccagggaggactgataatgagatcaagaatct 122
||||||||| || ||||| ||||||||||| || |||| || || ||||||||||| |
Sbjct: 144183 caggtggtcccagattgcggcgcagctgcccggccggacggacaacgagatcaagaactt 144124
Query: 123 atggaactcgtgcatcaagaagaagct 149
|||||||||||| |||||||||||||
Sbjct: 144123 ctggaactcgtgcctcaagaagaagct 144097
>gb|CH401166.1| Oryza sativa (japonica cultivar-group) chromosome 1 scaffold000003 genomic
scaffold, whole genome shotgun sequence
Length = 8539496
Score = 69.9 bits (35), Expect = 1e-009
Identities = 74/87 (85%)
Strand = Plus / Minus
Query: 63 caggtggtctcaaattgcagcgcagctgccagggaggactgataatgagatcaagaatct 122
||||||||| || ||||| ||||||||||| || |||| || || ||||||||||| |
Sbjct: 3275263 caggtggtcccagattgcggcgcagctgcccggccggacggacaacgagatcaagaactt 3275204
Query: 123 atggaactcgtgcatcaagaagaagct 149
|||||||||||| |||||||||||||
Sbjct: 3275203 ctggaactcgtgcctcaagaagaagct 3275177
>gb|AC087220.9| Oryza sativa chromosome 3 BAC OSJNBb0097F01 genomic sequence, complete
sequence
Length = 135594
Score = 61.9 bits (31), Expect = 3e-007
Identities = 73/87 (83%)
Strand = Plus / Plus
Query: 63 caggtggtctcaaattgcagcgcagctgccagggaggactgataatgagatcaagaatct 122
||||||||| || || || ||||||||||| ||| |||| || || ||| ||||||| |
Sbjct: 104192 caggtggtcgcagatcgcggcgcagctgccggggcggaccgacaacgaggtcaagaactt 104251
Query: 123 atggaactcgtgcatcaagaagaagct 149
|||||||||| |||||||||||||||
Sbjct: 104252 ctggaactcgtacatcaagaagaagct 104278
>ref|NT_079854.2| Oryza sativa (japonica cultivar-group)
Length = 2592259
Score = 61.9 bits (31), Expect = 3e-007
Identities = 73/87 (83%)
Strand = Plus / Minus
Query: 63 caggtggtctcaaattgcagcgcagctgccagggaggactgataatgagatcaagaatct 122
||||||||| || || || ||||||||||| ||| |||| || || ||| ||||||| |
Sbjct: 827861 caggtggtcgcagatcgcggcgcagctgccggggcggaccgacaacgaggtcaagaactt 827802
Query: 123 atggaactcgtgcatcaagaagaagct 149
|||||||||| |||||||||||||||
Sbjct: 827801 ctggaactcgtacatcaagaagaagct 827775
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
sequence
Length = 36192742
Score = 61.9 bits (31), Expect = 3e-007
Identities = 73/87 (83%)
Strand = Plus / Minus
Query: 63 caggtggtctcaaattgcagcgcagctgccagggaggactgataatgagatcaagaatct 122
||||||||| || || || ||||||||||| ||| |||| || || ||| ||||||| |
Sbjct: 14432164 caggtggtcgcagatcgcggcgcagctgccggggcggaccgacaacgaggtcaagaactt 14432105
Query: 123 atggaactcgtgcatcaagaagaagct 149
|||||||||| |||||||||||||||
Sbjct: 14432104 ctggaactcgtacatcaagaagaagct 14432078
Score = 44.1 bits (22), Expect = 0.068
Identities = 49/58 (84%)
Strand = Plus / Minus
Query: 62 acaggtggtctcaaattgcagcgcagctgccagggaggactgataatgagatcaagaa 119
|||||||||| ||| |||||||||||||| ||| |||| || ||||| ||||||||
Sbjct: 31740486 acaggtggtcgataatagcagcgcagctgccggggcggacggacaatgacatcaagaa 31740429
Score = 44.1 bits (22), Expect = 0.068
Identities = 40/46 (86%)
Strand = Plus / Minus
Query: 22 gaagaagacctcatcatcgagctgcacgctgtcctcgggaacaggt 67
||||| ||| |||||||| |||| |||||| ||||||||||||||
Sbjct: 10682559 gaagaggacgtcatcatcaagctccacgctaccctcgggaacaggt 10682514
Score = 38.2 bits (19), Expect = 4.2
Identities = 31/35 (88%)
Strand = Plus / Plus
Query: 85 cagctgccagggaggactgataatgagatcaagaa 119
|||||||| |||||||| || || |||||||||||
Sbjct: 21014271 cagctgccggggaggacggacaacgagatcaagaa 21014305
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
Length = 36102668
Score = 61.9 bits (31), Expect = 3e-007
Identities = 73/87 (83%)
Strand = Plus / Minus
Query: 63 caggtggtctcaaattgcagcgcagctgccagggaggactgataatgagatcaagaatct 122
||||||||| || || || ||||||||||| ||| |||| || || ||| ||||||| |
Sbjct: 14437189 caggtggtcgcagatcgcggcgcagctgccggggcggaccgacaacgaggtcaagaactt 14437130
Query: 123 atggaactcgtgcatcaagaagaagct 149
|||||||||| |||||||||||||||
Sbjct: 14437129 ctggaactcgtacatcaagaagaagct 14437103
Score = 44.1 bits (22), Expect = 0.068
Identities = 49/58 (84%)
Strand = Plus / Minus
Query: 62 acaggtggtctcaaattgcagcgcagctgccagggaggactgataatgagatcaagaa 119
|||||||||| ||| |||||||||||||| ||| |||| || ||||| ||||||||
Sbjct: 31649970 acaggtggtcgataatagcagcgcagctgccggggcggacggacaatgacatcaagaa 31649913
Score = 44.1 bits (22), Expect = 0.068
Identities = 40/46 (86%)
Strand = Plus / Minus
Query: 22 gaagaagacctcatcatcgagctgcacgctgtcctcgggaacaggt 67
||||| ||| |||||||| |||| |||||| ||||||||||||||
Sbjct: 10684458 gaagaggacgtcatcatcaagctccacgctaccctcgggaacaggt 10684413
Score = 38.2 bits (19), Expect = 4.2
Identities = 31/35 (88%)
Strand = Plus / Plus
Query: 85 cagctgccagggaggactgataatgagatcaagaa 119
|||||||| |||||||| || || |||||||||||
Sbjct: 21021242 cagctgccggggaggacggacaacgagatcaagaa 21021276
>gb|BP184885.1|BP184885 BP184885 pNS rice callus cDNA Oryza sativa (japonica
cultivar-group) cDNA clone 22C4AG011, mRNA sequence
Length = 688
Score = 60.0 bits (30), Expect = 1e-006
Identities = 99/122 (81%)
Strand = Plus / Plus
Query: 28 gacctcatcatcgagctgcacgctgtcctcgggaacaggtggtctcaaattgcagcgcag 87
||||||||| ||| |||||||| ||||||||||||||||||| || || || ||||
Sbjct: 42 gacctcatcgtcgcgctgcacgagatcctcgggaacaggtggtcgcagatcgcgtcgcac 101
Query: 88 ctgccagggaggactgataatgagatcaagaatctatggaactcgtgcatcaagaagaag 147
|||| |||||||| || || ||||||||||| | |||||| ||| |||||||||||
Sbjct: 102 ttgccggggaggacggacaacgagatcaagaacttctggaacagctgcctcaagaagaag 161
Query: 148 ct 149
||
Sbjct: 162 ct 163
>dbj|AK111782.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023084H22, full
insert sequence
Length = 1514
Score = 58.0 bits (29), Expect = 5e-006
Identities = 101/125 (80%)
Strand = Plus / Plus
Query: 61 aacaggtggtctcaaattgcagcgcagctgccagggaggactgataatgagatcaagaat 120
||||||||||| ||||| || |||| |||| |||||||| || || |||||||||||
Sbjct: 548 aacaggtggtcgcaaatcgcgtcgcacttgccggggaggacggacaacgagatcaagaac 607
Query: 121 ctatggaactcgtgcatcaagaagaagctgaggcagaaaggcattgatcccaacacccac 180
| |||||| ||| |||||||||||||||||||| ||||| || |||| |||||||
Sbjct: 608 ttctggaacagctgcctcaagaagaagctgaggcagcgcggcatcgaccccagcacccac 667
Query: 181 aagcc 185
||||
Sbjct: 668 cagcc 672
>ref|NM_192221.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 909
Score = 58.0 bits (29), Expect = 5e-006
Identities = 101/125 (80%)
Strand = Plus / Plus
Query: 61 aacaggtggtctcaaattgcagcgcagctgccagggaggactgataatgagatcaagaat 120
||||||||||| ||||| || |||| |||| |||||||| || || |||||||||||
Sbjct: 271 aacaggtggtcgcaaatcgcgtcgcacttgccggggaggacggacaacgagatcaagaac 330
Query: 121 ctatggaactcgtgcatcaagaagaagctgaggcagaaaggcattgatcccaacacccac 180
| |||||| ||| |||||||||||||||||||| ||||| || |||| |||||||
Sbjct: 331 ttctggaacagctgcctcaagaagaagctgaggcagcgcggcatcgaccccagcacccac 390
Query: 181 aagcc 185
||||
Sbjct: 391 cagcc 395
>ref|XM_470673.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 1098
Score = 58.0 bits (29), Expect = 5e-006
Identities = 101/125 (80%)
Strand = Plus / Plus
Query: 25 gaagacctcatcatcgagctgcacgctgtcctcgggaacaggtggtctcaaattgcagcg 84
|||||||||||||| ||||||| | | || || |||| |||||| || || || |||
Sbjct: 223 gaagacctcatcattcagctgcattccatgcttggcaacaagtggtcgcagatcgcggcg 282
Query: 85 cagctgccagggaggactgataatgagatcaagaatctatggaactcgtgcatcaagaag 144
|||||||| ||| |||| || || ||| ||||||| | |||||||||| ||||||||||
Sbjct: 283 cagctgccggggcggaccgacaacgaggtcaagaacttctggaactcgtacatcaagaag 342
Query: 145 aagct 149
|||||
Sbjct: 343 aagct 347
>gb|AACV01002173.1| Oryza sativa (japonica cultivar-group) chromosome 1 Ctg002173, whole
genome shotgun sequence
Length = 2583
Score = 54.0 bits (27), Expect = 7e-005
Identities = 99/123 (80%)
Strand = Plus / Minus
Query: 63 caggtggtctcaaattgcagcgcagctgccagggaggactgataatgagatcaagaatct 122
||||||||| ||||| || |||| |||| |||||||| || || ||||||||||| |
Sbjct: 1091 caggtggtcgcaaatcgcgtcgcacttgccggggaggacggacaacgagatcaagaactt 1032
Query: 123 atggaactcgtgcatcaagaagaagctgaggcagaaaggcattgatcccaacacccacaa 182
|||||| ||| |||||||||||||||||||| ||||| || |||| ||||||| |
Sbjct: 1031 ctggaacagctgcctcaagaagaagctgaggcagcgcggcatcgaccccagcacccacca 972
Query: 183 gcc 185
|||
Sbjct: 971 gcc 969
>gb|AACV01016284.1| Oryza sativa (japonica cultivar-group) chromosome 7 Ctg016284, whole
genome shotgun sequence
Length = 43156
Score = 54.0 bits (27), Expect = 7e-005
Identities = 33/35 (94%)
Strand = Plus / Minus
Query: 115 aagaatctatggaactcgtgcatcaagaagaagct 149
|||||| | ||||||||||||||||||||||||||
Sbjct: 20056 aagaatttctggaactcgtgcatcaagaagaagct 20022
>gb|AACV01016862.1| Oryza sativa (japonica cultivar-group) chromosome 7 Ctg016862, whole
genome shotgun sequence
Length = 35008
Score = 54.0 bits (27), Expect = 7e-005
Identities = 72/87 (82%)
Strand = Plus / Minus
Query: 63 caggtggtctcaaattgcagcgcagctgccagggaggactgataatgagatcaagaatct 122
|||||||||||| ||||| || |||||||| || |||| || || ||| ||||||| |
Sbjct: 34108 caggtggtctcagattgcggctcagctgccgggtcggacggacaacgaggtcaagaactt 34049
Query: 123 atggaactcgtgcatcaagaagaagct 149
|||||||| | |||||||||||||||
Sbjct: 34048 ctggaactcttacatcaagaagaagct 34022
>ref|NM_187376.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 1203
Score = 54.0 bits (27), Expect = 7e-005
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 115 aagaatctatggaactcgtgcatcaagaagaagct 149
|||||| | ||||||||||||||||||||||||||
Sbjct: 310 aagaatttctggaactcgtgcatcaagaagaagct 344
>ref|NT_079927.2| Oryza sativa (japonica cultivar-group)
Length = 14818989
Score = 54.0 bits (27), Expect = 7e-005
Identities = 99/123 (80%)
Strand = Plus / Minus
Query: 63 caggtggtctcaaattgcagcgcagctgccagggaggactgataatgagatcaagaatct 122
||||||||| ||||| || |||| |||| |||||||| || || ||||||||||| |
Sbjct: 3654447 caggtggtcgcaaatcgcgtcgcacttgccggggaggacggacaacgagatcaagaactt 3654388
Query: 123 atggaactcgtgcatcaagaagaagctgaggcagaaaggcattgatcccaacacccacaa 182
|||||| ||| |||||||||||||||||||| ||||| || |||| ||||||| |
Sbjct: 3654387 ctggaacagctgcctcaagaagaagctgaggcagcgcggcatcgaccccagcacccacca 3654328
Query: 183 gcc 185
|||
Sbjct: 3654327 gcc 3654325
Score = 40.1 bits (20), Expect = 1.1
Identities = 32/36 (88%)
Strand = Plus / Plus
Query: 84 gcagctgccagggaggactgataatgagatcaagaa 119
||||||||| |||||||| || || |||||||||||
Sbjct: 12454025 gcagctgccggggaggacggacaacgagatcaagaa 12454060
>dbj|AP004259.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
clone:P0005E02
Length = 89380
Score = 54.0 bits (27), Expect = 7e-005
Identities = 33/35 (94%)
Strand = Plus / Minus
Query: 115 aagaatctatggaactcgtgcatcaagaagaagct 149
|||||| | ||||||||||||||||||||||||||
Sbjct: 58611 aagaatttctggaactcgtgcatcaagaagaagct 58577
>dbj|AP004334.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
clone:P0455H11
Length = 101607
Score = 54.0 bits (27), Expect = 7e-005
Identities = 72/87 (82%)
Strand = Plus / Plus
Query: 63 caggtggtctcaaattgcagcgcagctgccagggaggactgataatgagatcaagaatct 122
|||||||||||| ||||| || |||||||| || |||| || || ||| ||||||| |
Sbjct: 77753 caggtggtctcagattgcggctcagctgccgggtcggacggacaacgaggtcaagaactt 77812
Query: 123 atggaactcgtgcatcaagaagaagct 149
|||||||| | |||||||||||||||
Sbjct: 77813 ctggaactcttacatcaagaagaagct 77839
>dbj|AP003752.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
clone:OJ1332_C12
Length = 67349
Score = 54.0 bits (27), Expect = 7e-005
Identities = 72/87 (82%)
Strand = Plus / Plus
Query: 63 caggtggtctcaaattgcagcgcagctgccagggaggactgataatgagatcaagaatct 122
|||||||||||| ||||| || |||||||| || |||| || || ||| ||||||| |
Sbjct: 22703 caggtggtctcagattgcggctcagctgccgggtcggacggacaacgaggtcaagaactt 22762
Query: 123 atggaactcgtgcatcaagaagaagct 149
|||||||| | |||||||||||||||
Sbjct: 22763 ctggaactcttacatcaagaagaagct 22789
>dbj|AP004006.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
clone:OJ1197_D06
Length = 103844
Score = 54.0 bits (27), Expect = 7e-005
Identities = 33/35 (94%)
Strand = Plus / Minus
Query: 115 aagaatctatggaactcgtgcatcaagaagaagct 149
|||||| | ||||||||||||||||||||||||||
Sbjct: 31123 aagaatttctggaactcgtgcatcaagaagaagct 31089
>ref|NT_079899.2| Oryza sativa (japonica cultivar-group)
Length = 17249721
Score = 54.0 bits (27), Expect = 7e-005
Identities = 72/87 (82%)
Strand = Plus / Plus
Query: 63 caggtggtctcaaattgcagcgcagctgccagggaggactgataatgagatcaagaatct 122
|||||||||||| ||||| || |||||||| || |||| || || ||| ||||||| |
Sbjct: 13916130 caggtggtctcagattgcggctcagctgccgggtcggacggacaacgaggtcaagaactt 13916189
Query: 123 atggaactcgtgcatcaagaagaagct 149
|||||||| | |||||||||||||||
Sbjct: 13916190 ctggaactcttacatcaagaagaagct 13916216
Score = 54.0 bits (27), Expect = 7e-005
Identities = 33/35 (94%)
Strand = Plus / Minus
Query: 115 aagaatctatggaactcgtgcatcaagaagaagct 149
|||||| | ||||||||||||||||||||||||||
Sbjct: 6229144 aagaatttctggaactcgtgcatcaagaagaagct 6229110
>dbj|AP003245.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
clone:P0421H07
Length = 158126
Score = 54.0 bits (27), Expect = 7e-005
Identities = 99/123 (80%)
Strand = Plus / Minus
Query: 63 caggtggtctcaaattgcagcgcagctgccagggaggactgataatgagatcaagaatct 122
||||||||| ||||| || |||| |||| |||||||| || || ||||||||||| |
Sbjct: 86760 caggtggtcgcaaatcgcgtcgcacttgccggggaggacggacaacgagatcaagaactt 86701
Query: 123 atggaactcgtgcatcaagaagaagctgaggcagaaaggcattgatcccaacacccacaa 182
|||||| ||| |||||||||||||||||||| ||||| || |||| ||||||| |
Sbjct: 86700 ctggaacagctgcctcaagaagaagctgaggcagcgcggcatcgaccccagcacccacca 86641
Query: 183 gcc 185
|||
Sbjct: 86640 gcc 86638
>gb|CH401226.1| Oryza sativa (japonica cultivar-group) chromosome 7 scaffold000063 genomic
scaffold, whole genome shotgun sequence
Length = 15204090
Score = 54.0 bits (27), Expect = 7e-005
Identities = 72/87 (82%)
Strand = Plus / Plus
Query: 63 caggtggtctcaaattgcagcgcagctgccagggaggactgataatgagatcaagaatct 122
|||||||||||| ||||| || |||||||| || |||| || || ||| ||||||| |
Sbjct: 11768919 caggtggtctcagattgcggctcagctgccgggtcggacggacaacgaggtcaagaactt 11768978
Query: 123 atggaactcgtgcatcaagaagaagct 149
|||||||| | |||||||||||||||
Sbjct: 11768979 ctggaactcttacatcaagaagaagct 11769005
Score = 54.0 bits (27), Expect = 7e-005
Identities = 33/35 (94%)
Strand = Plus / Minus
Query: 115 aagaatctatggaactcgtgcatcaagaagaagct 149
|||||| | ||||||||||||||||||||||||||
Sbjct: 4216263 aagaatttctggaactcgtgcatcaagaagaagct 4216229
>gb|CH401168.1| Oryza sativa (japonica cultivar-group) chromosome 1 scaffold000005 genomic
scaffold, whole genome shotgun sequence
Length = 17394610
Score = 54.0 bits (27), Expect = 7e-005
Identities = 99/123 (80%)
Strand = Plus / Minus
Query: 63 caggtggtctcaaattgcagcgcagctgccagggaggactgataatgagatcaagaatct 122
||||||||| ||||| || |||| |||| |||||||| || || ||||||||||| |
Sbjct: 3578690 caggtggtcgcaaatcgcgtcgcacttgccggggaggacggacaacgagatcaagaactt 3578631
Query: 123 atggaactcgtgcatcaagaagaagctgaggcagaaaggcattgatcccaacacccacaa 182
|||||| ||| |||||||||||||||||||| ||||| || |||| ||||||| |
Sbjct: 3578630 ctggaacagctgcctcaagaagaagctgaggcagcgcggcatcgaccccagcacccacca 3578571
Query: 183 gcc 185
|||
Sbjct: 3578570 gcc 3578568
Score = 40.1 bits (20), Expect = 1.1
Identities = 32/36 (88%)
Strand = Plus / Plus
Query: 84 gcagctgccagggaggactgataatgagatcaagaa 119
||||||||| |||||||| || || |||||||||||
Sbjct: 12183397 gcagctgccggggaggacggacaacgagatcaagaa 12183432
>gb|CM000144.1| Oryza sativa (japonica cultivar-group) chromosome 7, whole genome shotgun
sequence
Length = 28626509
Score = 54.0 bits (27), Expect = 7e-005
Identities = 72/87 (82%)
Strand = Plus / Plus
Query: 63 caggtggtctcaaattgcagcgcagctgccagggaggactgataatgagatcaagaatct 122
|||||||||||| ||||| || |||||||| || |||| || || ||| ||||||| |
Sbjct: 25168358 caggtggtctcagattgcggctcagctgccgggtcggacggacaacgaggtcaagaactt 25168417
Query: 123 atggaactcgtgcatcaagaagaagct 149
|||||||| | |||||||||||||||
Sbjct: 25168418 ctggaactcttacatcaagaagaagct 25168444
Score = 54.0 bits (27), Expect = 7e-005
Identities = 33/35 (94%)
Strand = Plus / Minus
Query: 115 aagaatctatggaactcgtgcatcaagaagaagct 149
|||||| | ||||||||||||||||||||||||||
Sbjct: 17615702 aagaatttctggaactcgtgcatcaagaagaagct 17615668
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
sequence
Length = 29644043
Score = 54.0 bits (27), Expect = 7e-005
Identities = 72/87 (82%)
Strand = Plus / Plus
Query: 63 caggtggtctcaaattgcagcgcagctgccagggaggactgataatgagatcaagaatct 122
|||||||||||| ||||| || |||||||| || |||| || || ||| ||||||| |
Sbjct: 26303125 caggtggtctcagattgcggctcagctgccgggtcggacggacaacgaggtcaagaactt 26303184
Query: 123 atggaactcgtgcatcaagaagaagct 149
|||||||| | |||||||||||||||
Sbjct: 26303185 ctggaactcttacatcaagaagaagct 26303211
Score = 54.0 bits (27), Expect = 7e-005
Identities = 33/35 (94%)
Strand = Plus / Minus
Query: 115 aagaatctatggaactcgtgcatcaagaagaagct 149
|||||| | ||||||||||||||||||||||||||
Sbjct: 18606069 aagaatttctggaactcgtgcatcaagaagaagct 18606035
>gb|CB643957.1|CB643957 OSJNEb04P04.f OSJNEb Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEb04P04 5', mRNA sequence
Length = 777
Score = 50.1 bits (25), Expect = 0.001
Identities = 73/89 (82%)
Strand = Plus / Plus
Query: 61 aacaggtggtctcaaattgcagcgcagctgccagggaggactgataatgagatcaagaat 120
|||| ||||||||| ||||| || |||||||| || |||| || || ||| |||||||
Sbjct: 393 aacaagtggtctcagattgcggctcagctgccgggtcggacggacaacgaggtcaagaac 452
Query: 121 ctatggaactcgtgcatcaagaagaagct 149
| |||||||| | |||||||||||||||
Sbjct: 453 ttctggaactcttacatcaagaagaagct 481
>ref|NM_193128.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 525
Score = 50.1 bits (25), Expect = 0.001
Identities = 73/89 (82%)
Strand = Plus / Plus
Query: 61 aacaggtggtctcaaattgcagcgcagctgccagggaggactgataatgagatcaagaat 120
|||| ||||||||| ||||| || |||||||| || |||| || || ||| |||||||
Sbjct: 259 aacaagtggtctcagattgcggctcagctgccgggtcggacggacaacgaggtcaagaac 318
Query: 121 ctatggaactcgtgcatcaagaagaagct 149
| |||||||| | |||||||||||||||
Sbjct: 319 ttctggaactcttacatcaagaagaagct 347
>gb|AU083547.1|AU083547 AU083547 Rice green shoot Oryza sativa (japonica cultivar-group)
cDNA clone S10591, mRNA sequence
Length = 542
Score = 48.1 bits (24), Expect = 0.004
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 22 gaagaagacctcatcatcgagctgcacgctgtcct 56
||||||||||||||||| ||||| || ||||||||
Sbjct: 504 gaagaagacctcatcattgagctncatgctgtcct 538
>dbj|AK066834.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013083O13, full
insert sequence
Length = 1069
Score = 46.1 bits (23), Expect = 0.017
Identities = 56/67 (83%)
Strand = Plus / Plus
Query: 53 tcctcgggaacaggtggtctcaaattgcagcgcagctgccagggaggactgataatgaga 112
||||||| |||| |||||||| || || | ||||||||| |||||||| || || ||||
Sbjct: 389 tcctcggcaacaagtggtctctgatcgccgggcagctgccggggaggacggacaacgaga 448
Query: 113 tcaagaa 119
|||||||
Sbjct: 449 tcaagaa 455
>dbj|AK099108.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023030O22, full
insert sequence
Length = 1023
Score = 46.1 bits (23), Expect = 0.017
Identities = 56/67 (83%)
Strand = Plus / Plus
Query: 53 tcctcgggaacaggtggtctcaaattgcagcgcagctgccagggaggactgataatgaga 112
||||||| |||| |||||||| || || | ||||||||| |||||||| || || ||||
Sbjct: 393 tcctcggcaacaagtggtctctgatcgccgggcagctgccggggaggacggacaacgaga 452
Query: 113 tcaagaa 119
|||||||
Sbjct: 453 tcaagaa 459
>dbj|AK104053.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-023-G03, full
insert sequence
Length = 1042
Score = 46.1 bits (23), Expect = 0.017
Identities = 56/67 (83%)
Strand = Plus / Plus
Query: 53 tcctcgggaacaggtggtctcaaattgcagcgcagctgccagggaggactgataatgaga 112
||||||| |||| |||||||| || || | ||||||||| |||||||| || || ||||
Sbjct: 384 tcctcggcaacaagtggtctctgatcgccgggcagctgccggggaggacggacaacgaga 443
Query: 113 tcaagaa 119
|||||||
Sbjct: 444 tcaagaa 450
>ref|XM_475269.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 783
Score = 46.1 bits (23), Expect = 0.017
Identities = 56/67 (83%)
Strand = Plus / Plus
Query: 53 tcctcgggaacaggtggtctcaaattgcagcgcagctgccagggaggactgataatgaga 112
||||||| |||| |||||||| || || | ||||||||| |||||||| || || ||||
Sbjct: 251 tcctcggcaacaagtggtctctgatcgccgggcagctgccggggaggacggacaacgaga 310
Query: 113 tcaagaa 119
|||||||
Sbjct: 311 tcaagaa 317
>gb|AY873246.1|AY873246 04ET3_013_I_007_019_029C07 Oryza sativa (japonica cultivar-group)
transposon insertional mutants Oryza sativa (japonica
cultivar-group) genomic clone
04ET3_013_I_007_019_029C07, DNA sequence
Length = 409
Score = 44.1 bits (22), Expect = 0.068
Identities = 49/58 (84%)
Strand = Plus / Minus
Query: 62 acaggtggtctcaaattgcagcgcagctgccagggaggactgataatgagatcaagaa 119
|||||||||| ||| |||||||||||||| ||| |||| || ||||| ||||||||
Sbjct: 379 acaggtggtcgataatagcagcgcagctgccggggcggacggacaatgacatcaagaa 322
>gb|AF474141.1| Oryza sativa typical A-type R2R3 Myb protein gene, complete cds
Length = 9589
Score = 44.1 bits (22), Expect = 0.068
Identities = 40/46 (86%)
Strand = Plus / Plus
Query: 22 gaagaagacctcatcatcgagctgcacgctgtcctcgggaacaggt 67
||||| ||| |||||||| |||| |||||| ||||||||||||||
Sbjct: 1418 gaagaggacgtcatcatcaagctccacgctaccctcgggaacaggt 1463
>gb|AC137267.2| Genomic sequence for Oryza sativa, Nipponbare strain, clone
OSJNBa0032G21, from chromosome 3, complete sequence
Length = 187621
Score = 44.1 bits (22), Expect = 0.068
Identities = 40/46 (86%)
Strand = Plus / Minus
Query: 22 gaagaagacctcatcatcgagctgcacgctgtcctcgggaacaggt 67
||||| ||| |||||||| |||| |||||| ||||||||||||||
Sbjct: 101372 gaagaggacgtcatcatcaagctccacgctaccctcgggaacaggt 101327
>gb|AC133450.6| Oryza sativa chromosome 3 BAC OSJNBa0072F13 genomic sequence, complete
sequence
Length = 150743
Score = 44.1 bits (22), Expect = 0.068
Identities = 49/58 (84%)
Strand = Plus / Plus
Query: 62 acaggtggtctcaaattgcagcgcagctgccagggaggactgataatgagatcaagaa 119
|||||||||| ||| |||||||||||||| ||| |||| || ||||| ||||||||
Sbjct: 30697 acaggtggtcgataatagcagcgcagctgccggggcggacggacaatgacatcaagaa 30754
>gb|AACV01006437.1| Oryza sativa (japonica cultivar-group) chromosome 3 Ctg006437, whole
genome shotgun sequence
Length = 32106
Score = 44.1 bits (22), Expect = 0.068
Identities = 40/46 (86%)
Strand = Plus / Minus
Query: 22 gaagaagacctcatcatcgagctgcacgctgtcctcgggaacaggt 67
||||| ||| |||||||| |||| |||||| ||||||||||||||
Sbjct: 24540 gaagaggacgtcatcatcaagctccacgctaccctcgggaacaggt 24495
>gb|AACV01008001.1| Oryza sativa (japonica cultivar-group) chromosome 3 Ctg008001, whole
genome shotgun sequence
Length = 108118
Score = 44.1 bits (22), Expect = 0.068
Identities = 49/58 (84%)
Strand = Plus / Plus
Query: 62 acaggtggtctcaaattgcagcgcagctgccagggaggactgataatgagatcaagaa 119
|||||||||| ||| |||||||||||||| ||| |||| || ||||| ||||||||
Sbjct: 18778 acaggtggtcgataatagcagcgcagctgccggggcggacggacaatgacatcaagaa 18835
>ref|NT_107187.1| Oryza sativa (japonica cultivar-group)
Length = 2541880
Score = 44.1 bits (22), Expect = 0.068
Identities = 49/58 (84%)
Strand = Plus / Minus
Query: 62 acaggtggtctcaaattgcagcgcagctgccagggaggactgataatgagatcaagaa 119
|||||||||| ||| |||||||||||||| ||| |||| || ||||| ||||||||
Sbjct: 829360 acaggtggtcgataatagcagcgcagctgccggggcggacggacaatgacatcaagaa 829303
>ref|NT_107192.1| Oryza sativa (japonica cultivar-group)
Length = 4781381
Score = 44.1 bits (22), Expect = 0.068
Identities = 40/46 (86%)
Strand = Plus / Minus
Query: 22 gaagaagacctcatcatcgagctgcacgctgtcctcgggaacaggt 67
||||| ||| |||||||| |||| |||||| ||||||||||||||
Sbjct: 2028375 gaagaggacgtcatcatcaagctccacgctaccctcgggaacaggt 2028330
>gb|CH401176.1| Oryza sativa (japonica cultivar-group) chromosome 3 scaffold000013 genomic
scaffold, whole genome shotgun sequence
Length = 9810738
Score = 44.1 bits (22), Expect = 0.068
Identities = 49/58 (84%)
Strand = Plus / Minus
Query: 62 acaggtggtctcaaattgcagcgcagctgccagggaggactgataatgagatcaagaa 119
|||||||||| ||| |||||||||||||| ||| |||| || ||||| ||||||||
Sbjct: 5289988 acaggtggtcgataatagcagcgcagctgccggggcggacggacaatgacatcaagaa 5289931
>gb|CH401173.1| Oryza sativa (japonica cultivar-group) chromosome 3 scaffold000010 genomic
scaffold, whole genome shotgun sequence
Length = 13858245
Score = 44.1 bits (22), Expect = 0.068
Identities = 40/46 (86%)
Strand = Plus / Minus
Query: 22 gaagaagacctcatcatcgagctgcacgctgtcctcgggaacaggt 67
||||| ||| |||||||| |||| |||||| ||||||||||||||
Sbjct: 10770936 gaagaggacgtcatcatcaagctccacgctaccctcgggaacaggt 10770891
>gb|CM000140.1| Oryza sativa (japonica cultivar-group) chromosome 3, whole genome shotgun
sequence
Length = 37803064
Score = 44.1 bits (22), Expect = 0.068
Identities = 49/58 (84%)
Strand = Plus / Minus
Query: 62 acaggtggtctcaaattgcagcgcagctgccagggaggactgataatgagatcaagaa 119
|||||||||| ||| |||||||||||||| ||| |||| || ||||| ||||||||
Sbjct: 32556151 acaggtggtcgataatagcagcgcagctgccggggcggacggacaatgacatcaagaa 32556094
Score = 44.1 bits (22), Expect = 0.068
Identities = 40/46 (86%)
Strand = Plus / Minus
Query: 22 gaagaagacctcatcatcgagctgcacgctgtcctcgggaacaggt 67
||||| ||| |||||||| |||| |||||| ||||||||||||||
Sbjct: 10963298 gaagaggacgtcatcatcaagctccacgctaccctcgggaacaggt 10963253
>gb|AU082155.1|AU082155 AU082155 Rice root Oryza sativa (japonica cultivar-group) cDNA
clone R0628, mRNA sequence
Length = 537
Score = 42.1 bits (21), Expect = 0.27
Identities = 39/45 (86%)
Strand = Plus / Plus
Query: 76 attgcagcgcagctgccagggaggactgataatgagatcaagaat 120
||||||||| |||||| |||||||| || || ||||||||||||
Sbjct: 372 attgcagcgaggctgccggggaggacggacaacgagatcaagaat 416
>gb|AU082166.1|AU082166 AU082166 Rice cDNA from young root Oryza sativa (japonica
cultivar-group) cDNA clone R10372, mRNA sequence
Length = 312
Score = 42.1 bits (21), Expect = 0.27
Identities = 48/57 (84%)
Strand = Plus / Plus
Query: 63 caggtggtctcaaattgcagcgcagctgccagggaggactgataatgagatcaagaa 119
||||||||||| || || | ||||||||| |||||||| || || |||||||||||
Sbjct: 100 caggtggtctctgatcgccgggcagctgccggggaggacggacaacgagatcaagaa 156
>gb|AU183276.1|AU183276 AU183276 Rice cDNA from immature leaf including apical meristem
(under short day condition) Oryza sativa (japonica
cultivar-group) cDNA clone E60862, mRNA sequence
Length = 451
Score = 42.1 bits (21), Expect = 0.27
Identities = 72/89 (80%)
Strand = Plus / Plus
Query: 31 ctcatcatcgagctgcacgctgtcctcgggaacaggtggtctcaaattgcagcgcagctg 90
||||||||| |||| ||||| | ||||| |||| |||||| ||||| | |||||||
Sbjct: 299 ctcatcatcaagctccacgcccttctcggcaacaagtggtcgttgattgcggggcagctg 358
Query: 91 ccagggaggactgataatgagatcaagaa 119
|| |||||||| || || |||||||||||
Sbjct: 359 ccggggaggacggacaacgagatcaagaa 387
>gb|CB653197.1|CB653197 OSJNEc04A04.f OSJNEc Oryza sativa (japonica cultivar-group) cDNA
clone OSJNEc04A04 5', mRNA sequence
Length = 610
Score = 42.1 bits (21), Expect = 0.27
Identities = 81/101 (80%)
Strand = Plus / Plus
Query: 19 gacgaagaagacctcatcatcgagctgcacgctgtcctcgggaacaggtggtctcaaatt 78
||||| || |||||||||||| |||| ||| ||||||| |||| |||||||| ||
Sbjct: 248 gacgaggacgacctcatcatcaagctccacagcctcctcggcaacaagtggtctctgatc 307
Query: 79 gcagcgcagctgccagggaggactgataatgagatcaagaa 119
|| ||| |||||| |||||||| || || |||||||||||
Sbjct: 308 gcggcgaggctgccggggaggacggacaacgagatcaagaa 348
>dbj|AP005070.1| Oryza sativa (japonica cultivar-group) chromosome 2 clone P0656G12, ***
SEQUENCING IN PROGRESS ***
Length = 154494
Score = 42.1 bits (21), Expect = 0.27
Identities = 39/45 (86%)
Strand = Plus / Minus
Query: 76 attgcagcgcagctgccagggaggactgataatgagatcaagaat 120
||||||||| |||||| |||||||| || || ||||||||||||
Sbjct: 35424 attgcagcgaggctgccggggaggacggacaacgagatcaagaat 35380
>dbj|AK060684.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-029-F12, full
insert sequence
Length = 1037
Score = 42.1 bits (21), Expect = 0.27
Identities = 72/89 (80%)
Strand = Plus / Plus
Query: 31 ctcatcatcgagctgcacgctgtcctcgggaacaggtggtctcaaattgcagcgcagctg 90
||||||||| |||| ||||| | ||||| |||| |||||| ||||| | |||||||
Sbjct: 325 ctcatcatcaagctccacgcccttctcggcaacaagtggtcgttgattgcggggcagctg 384
Query: 91 ccagggaggactgataatgagatcaagaa 119
|| |||||||| || || |||||||||||
Sbjct: 385 ccggggaggacggacaacgagatcaagaa 413
>dbj|AK112018.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-308-C02, full
insert sequence
Length = 1367
Score = 42.1 bits (21), Expect = 0.27
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 79 gcagcgcagctgccagggaggactgataatgagatcaagaa 119
|||||||||||||| ||| |||| || ||||| ||||||||
Sbjct: 382 gcagcgcagctgccggggcggacggacaatgacatcaagaa 422
>dbj|AK112056.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-110-C03, full
insert sequence
Length = 1038
Score = 42.1 bits (21), Expect = 0.27
Identities = 39/45 (86%)
Strand = Plus / Plus
Query: 76 attgcagcgcagctgccagggaggactgataatgagatcaagaat 120
||||||||| |||||| |||||||| || || ||||||||||||
Sbjct: 396 attgcagcgaggctgccggggaggacggacaacgagatcaagaat 440
>dbj|AP006523.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
clone:B1215B07
Length = 165957
Score = 42.1 bits (21), Expect = 0.27
Identities = 39/45 (86%)
Strand = Plus / Minus
Query: 76 attgcagcgcagctgccagggaggactgataatgagatcaagaat 120
||||||||| |||||| |||||||| || || ||||||||||||
Sbjct: 59195 attgcagcgaggctgccggggaggacggacaacgagatcaagaat 59151
>gb|AACV01004944.1| Oryza sativa (japonica cultivar-group) chromosome 2 Ctg004944, whole
genome shotgun sequence
Length = 38231
Score = 42.1 bits (21), Expect = 0.27
Identities = 39/45 (86%)
Strand = Plus / Plus
Query: 76 attgcagcgcagctgccagggaggactgataatgagatcaagaat 120
||||||||| |||||| |||||||| || || ||||||||||||
Sbjct: 6514 attgcagcgaggctgccggggaggacggacaacgagatcaagaat 6558
>gb|AACV01012232.1| Oryza sativa (japonica cultivar-group) chromosome 5 Ctg012232, whole
genome shotgun sequence
Length = 74847
Score = 42.1 bits (21), Expect = 0.27
Identities = 48/57 (84%)
Strand = Plus / Minus
Query: 63 caggtggtctcaaattgcagcgcagctgccagggaggactgataatgagatcaagaa 119
||||||||||| || || | ||||||||| |||||||| || || |||||||||||
Sbjct: 49485 caggtggtctctgatcgccgggcagctgccggggaggacggacaacgagatcaagaa 49429
>ref|NM_190827.1| Oryza sativa (japonica cultivar-group), predicted mRNA
Length = 864
Score = 42.1 bits (21), Expect = 0.27
Identities = 72/89 (80%)
Strand = Plus / Plus
Query: 31 ctcatcatcgagctgcacgctgtcctcgggaacaggtggtctcaaattgcagcgcagctg 90
||||||||| |||| ||||| | ||||| |||| |||||| ||||| | |||||||
Sbjct: 229 ctcatcatcaagctccacgcccttctcggcaacaagtggtcgttgattgcggggcagctg 288
Query: 91 ccagggaggactgataatgagatcaagaa 119
|| |||||||| || || |||||||||||
Sbjct: 289 ccggggaggacggacaacgagatcaagaa 317
>ref|XM_466825.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 1038
Score = 42.1 bits (21), Expect = 0.27
Identities = 39/45 (86%)
Strand = Plus / Plus
Query: 76 attgcagcgcagctgccagggaggactgataatgagatcaagaat 120
||||||||| |||||| |||||||| || || ||||||||||||
Sbjct: 396 attgcagcgaggctgccggggaggacggacaacgagatcaagaat 440
>ref|XM_483665.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 732
Score = 42.1 bits (21), Expect = 0.27
Identities = 81/101 (80%)
Strand = Plus / Plus
Query: 19 gacgaagaagacctcatcatcgagctgcacgctgtcctcgggaacaggtggtctcaaatt 78
||||| || |||||||||||| |||| ||| ||||||| |||| |||||||| ||
Sbjct: 217 gacgaggacgacctcatcatcaagctccacagcctcctcggcaacaagtggtctctgatc 276
Query: 79 gcagcgcagctgccagggaggactgataatgagatcaagaa 119
|| ||| |||||| |||||||| || || |||||||||||
Sbjct: 277 gcggcgaggctgccggggaggacggacaacgagatcaagaa 317
>ref|NT_107181.1| Oryza sativa (japonica cultivar-group)
Length = 9248309
Score = 42.1 bits (21), Expect = 0.27
Identities = 39/45 (86%)
Strand = Plus / Minus
Query: 76 attgcagcgcagctgccagggaggactgataatgagatcaagaat 120
||||||||| |||||| |||||||| || || ||||||||||||
Sbjct: 62911 attgcagcgaggctgccggggaggacggacaacgagatcaagaat 62867
>ref|NT_107212.1| Oryza sativa (japonica cultivar-group)
Length = 2712182
Score = 42.1 bits (21), Expect = 0.27
Identities = 48/57 (84%)
Strand = Plus / Minus
Query: 63 caggtggtctcaaattgcagcgcagctgccagggaggactgataatgagatcaagaa 119
||||||||||| || || | ||||||||| |||||||| || || |||||||||||
Sbjct: 2261205 caggtggtctctgatcgccgggcagctgccggggaggacggacaacgagatcaagaa 2261149
>gb|AC130600.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone
OSJNBb0048I21, complete sequence
Length = 137650
Score = 42.1 bits (21), Expect = 0.27
Identities = 48/57 (84%)
Strand = Plus / Minus
Query: 63 caggtggtctcaaattgcagcgcagctgccagggaggactgataatgagatcaagaa 119
||||||||||| || || | ||||||||| |||||||| || || |||||||||||
Sbjct: 82619 caggtggtctctgatcgccgggcagctgccggggaggacggacaacgagatcaagaa 82563
>gb|CH401206.1| Oryza sativa (japonica cultivar-group) chromosome 5 scaffold000043 genomic
scaffold, whole genome shotgun sequence
Length = 11965857
Score = 42.1 bits (21), Expect = 0.27
Identities = 48/57 (84%)
Strand = Plus / Minus
Query: 63 caggtggtctcaaattgcagcgcagctgccagggaggactgataatgagatcaagaa 119
||||||||||| || || | ||||||||| |||||||| || || |||||||||||
Sbjct: 3311526 caggtggtctctgatcgccgggcagctgccggggaggacggacaacgagatcaagaa 3311470
Score = 40.1 bits (20), Expect = 1.1
Identities = 35/40 (87%)
Strand = Plus / Plus
Query: 28 gacctcatcatcgagctgcacgctgtcctcgggaacaggt 67
||||||||| ||| |||||||| |||||||||||||||
Sbjct: 9201930 gacctcatcgtcgcgctgcacgagatcctcgggaacaggt 9201969
>gb|CH401170.1| Oryza sativa (japonica cultivar-group) chromosome 2 scaffold000007 genomic
scaffold, whole genome shotgun sequence
Length = 22563205
Score = 42.1 bits (21), Expect = 0.27
Identities = 39/45 (86%)
Strand = Plus / Minus
Query: 76 attgcagcgcagctgccagggaggactgataatgagatcaagaat 120
||||||||| |||||| |||||||| || || ||||||||||||
Sbjct: 11224277 attgcagcgaggctgccggggaggacggacaacgagatcaagaat 11224233
>gb|CM000139.1| Oryza sativa (japonica cultivar-group) chromosome 2, whole genome shotgun
sequence
Length = 36016269
Score = 42.1 bits (21), Expect = 0.27
Identities = 39/45 (86%)
Strand = Plus / Minus
Query: 76 attgcagcgcagctgccagggaggactgataatgagatcaagaat 120
||||||||| |||||| |||||||| || || ||||||||||||
Sbjct: 24677341 attgcagcgaggctgccggggaggacggacaacgagatcaagaat 24677297
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
sequence
Length = 35954743
Score = 42.1 bits (21), Expect = 0.27
Identities = 39/45 (86%)
Strand = Plus / Minus
Query: 76 attgcagcgcagctgccagggaggactgataatgagatcaagaat 120
||||||||| |||||| |||||||| || || ||||||||||||
Sbjct: 24897912 attgcagcgaggctgccggggaggacggacaacgagatcaagaat 24897868
>gb|AQ287492.1|AQ287492 nbxb0030K04r CUGI Rice BAC Library Oryza sativa (japonica
cultivar-group) genomic clone nbxb0030K04r, DNA sequence
Length = 690
Score = 40.1 bits (20), Expect = 1.1
Identities = 68/84 (80%)
Strand = Plus / Plus
Query: 66 gtggtctcaaattgcagcgcagctgccagggaggactgataatgagatcaagaatctatg 125
||||||||| ||||| || || ||||| || |||| || || ||| ||||||| | ||
Sbjct: 590 gtggtctcagattgccgctcaactgcccggtcggacggacaacgaggtcaagaacttctg 649
Query: 126 gaactcgtgcatcaagaagaagct 149
|||||| | |||||||||||||||
Sbjct: 650 gaactcttacatcaagaagaagct 673
>gb|AQ051267.1|AQ051267 nbxb0001cF08f CUGI Rice BAC Library Oryza sativa (japonica
cultivar-group) genomic clone nbxb0001L15f, DNA sequence
Length = 658
Score = 40.1 bits (20), Expect = 1.1
Identities = 68/84 (80%)
Strand = Plus / Plus
Query: 66 gtggtctcaaattgcagcgcagctgccagggaggactgataatgagatcaagaatctatg 125
||||||||| ||||| || || ||||| || |||| || || ||| ||||||| | ||
Sbjct: 556 gtggtctcagattgcggctcacctgccgggtcggacggacaacgaggtcaagaacttctg 615
Query: 126 gaactcgtgcatcaagaagaagct 149
|||||| | |||||||||||||||
Sbjct: 616 gaactcttacatcaagaagaagct 639
>gb|C73695.1|C73695 C73695 Rice panicle (longer than 10cm) Oryza sativa (japonica
cultivar-group) cDNA clone E20178_2A, mRNA sequence
Length = 427
Score = 40.1 bits (20), Expect = 1.1
Identities = 32/36 (88%)
Strand = Plus / Plus
Query: 84 gcagctgccagggaggactgataatgagatcaagaa 119
||||||||| |||||||| || || |||||||||||
Sbjct: 348 gcagctgccggggaggacggacaacgagatcaagaa 383
>dbj|AP003922.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
clone:P0648C09
Length = 107522
Score = 40.1 bits (20), Expect = 1.1
Identities = 32/36 (88%)
Strand = Plus / Plus
Query: 84 gcagctgccagggaggactgataatgagatcaagaa 119
||||||||| |||||||| || || |||||||||||
Sbjct: 22248 gcagctgccggggaggacggacaacgagatcaagaa 22283
>gb|AY459335.1| Oryza sativa (japonica cultivar-group) clone CL026180.5 R2R3-MYB gene
region
Length = 24910
Score = 40.1 bits (20), Expect = 1.1
Identities = 32/36 (88%)
Strand = Plus / Plus
Query: 84 gcagctgccagggaggactgataatgagatcaagaa 119
||||||||| |||||||| || || |||||||||||
Sbjct: 20936 gcagctgccggggaggacggacaacgagatcaagaa 20971
>gb|AC118285.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1206_C08,
complete sequence
Length = 115026
Score = 40.1 bits (20), Expect = 1.1
Identities = 35/40 (87%)
Strand = Plus / Plus
Query: 28 gacctcatcatcgagctgcacgctgtcctcgggaacaggt 67
||||||||| ||| |||||||| |||||||||||||||
Sbjct: 19421 gacctcatcgtcgcgctgcacgagatcctcgggaacaggt 19460
>gb|AC098833.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1288_A07,
complete sequence
Length = 122120
Score = 40.1 bits (20), Expect = 1.1
Identities = 35/40 (87%)
Strand = Plus / Plus
Query: 28 gacctcatcatcgagctgcacgctgtcctcgggaacaggt 67
||||||||| ||| |||||||| |||||||||||||||
Sbjct: 63120 gacctcatcgtcgcgctgcacgagatcctcgggaacaggt 63159
>gb|AACV01002776.1| Oryza sativa (japonica cultivar-group) chromosome 1 Ctg002776, whole
genome shotgun sequence
Length = 36030
Score = 40.1 bits (20), Expect = 1.1
Identities = 32/36 (88%)
Strand = Plus / Plus
Query: 84 gcagctgccagggaggactgataatgagatcaagaa 119
||||||||| |||||||| || || |||||||||||
Sbjct: 1537 gcagctgccggggaggacggacaacgagatcaagaa 1572
>gb|AACV01012646.1| Oryza sativa (japonica cultivar-group) chromosome 5 Ctg012646, whole
genome shotgun sequence
Length = 33120
Score = 40.1 bits (20), Expect = 1.1
Identities = 35/40 (87%)
Strand = Plus / Plus
Query: 28 gacctcatcatcgagctgcacgctgtcctcgggaacaggt 67
||||||||| ||| |||||||| |||||||||||||||
Sbjct: 30468 gacctcatcgtcgcgctgcacgagatcctcgggaacaggt 30507
>ref|NT_107219.1| Oryza sativa (japonica cultivar-group)
Length = 612170
Score = 40.1 bits (20), Expect = 1.1
Identities = 35/40 (87%)
Strand = Plus / Plus
Query: 28 gacctcatcatcgagctgcacgctgtcctcgggaacaggt 67
||||||||| ||| |||||||| |||||||||||||||
Sbjct: 425874 gacctcatcgtcgcgctgcacgagatcctcgggaacaggt 425913
>dbj|AP004669.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
clone:P0491F11
Length = 152274
Score = 40.1 bits (20), Expect = 1.1
Identities = 32/36 (88%)
Strand = Plus / Plus
Query: 84 gcagctgccagggaggactgataatgagatcaagaa 119
||||||||| |||||||| || || |||||||||||
Sbjct: 147328 gcagctgccggggaggacggacaacgagatcaagaa 147363
>dbj|AP003297.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
clone:P0698A10
Length = 137348
Score = 40.1 bits (20), Expect = 1.1
Identities = 32/36 (88%)
Strand = Plus / Plus
Query: 84 gcagctgccagggaggactgataatgagatcaagaa 119
||||||||| |||||||| || || |||||||||||
Sbjct: 6916 gcagctgccggggaggacggacaacgagatcaagaa 6951
>gb|AU081563.1|AU081563 AU081563 Rice panicle shorter than 3cm Oryza sativa (japonica
cultivar-group) cDNA clone E30494_8Z, mRNA sequence
Length = 409
Score = 38.2 bits (19), Expect = 4.2
Identities = 76/95 (80%)
Strand = Plus / Plus
Query: 55 ctcgggaacaggtggtctcaaattgcagcgcagctgccagggaggactgataatgagatc 114
||||| ||||||||||| | || || |||| ||| || |||||||| || || ||||||
Sbjct: 131 ctcggcaacaggtggtccaagatcgcggcgcggctccccgggaggacggacaacgagatc 190
Query: 115 aagaatctatggaactcgtgcatcaagaagaagct 149
||||| | |||||| | |||||||||||||||
Sbjct: 191 aagaaccactggaacacacacatcaagaagaagct 225
>emb|AL607104.1|OSJN01012 Oryza sativa (japonica cultivar-group) chromosome 3 clone
OSJNBa0083K01, *** SEQUENCING IN PROGRESS ***
Length = 166307
Score = 38.2 bits (19), Expect = 4.2
Identities = 31/35 (88%)
Strand = Plus / Minus
Query: 85 cagctgccagggaggactgataatgagatcaagaa 119
|||||||| |||||||| || || |||||||||||
Sbjct: 62822 cagctgccggggaggacggacaacgagatcaagaa 62788
>dbj|AK064679.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-115-H05, full
insert sequence
Length = 1389
Score = 38.2 bits (19), Expect = 4.2
Identities = 55/67 (82%)
Strand = Plus / Plus
Query: 83 cgcagctgccagggaggactgataatgagatcaagaatctatggaactcgtgcatcaaga 142
|||| ||||| || ||||| || || ||||||||||| | |||||| || ||||||||
Sbjct: 430 cgcacctgccgggcaggacggacaacgagatcaagaaccactggaacacgcacatcaaga 489
Query: 143 agaagct 149
|||||||
Sbjct: 490 agaagct 496
>dbj|AK069869.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023038A16, full
insert sequence
Length = 970
Score = 38.2 bits (19), Expect = 4.2
Identities = 49/59 (83%)
Strand = Plus / Plus
Query: 91 ccagggaggactgataatgagatcaagaatctatggaactcgtgcatcaagaagaagct 149
|||||||| || || || ||||||||||| | |||||| || |||||||||||||||
Sbjct: 163 ccagggagaacagacaacgagatcaagaaccattggaacacgcacatcaagaagaagct 221
>dbj|AK072403.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023080H01, full
insert sequence
Length = 2294
Score = 38.2 bits (19), Expect = 4.2
Identities = 28/31 (90%)
Strand = Plus / Plus
Query: 89 tgccagggaggactgataatgagatcaagaa 119
||||||||||||| || || |||||||||||
Sbjct: 1564 tgccagggaggaccgacaacgagatcaagaa 1594
>dbj|AK107483.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-129-C06, full
insert sequence
Length = 1163
Score = 38.2 bits (19), Expect = 4.2
Identities = 76/95 (80%)
Strand = Plus / Plus
Query: 55 ctcgggaacaggtggtctcaaattgcagcgcagctgccagggaggactgataatgagatc 114
||||| ||||||||||| | || || |||| ||| || |||||||| || || ||||||
Sbjct: 431 ctcggcaacaggtggtccaagatcgcggcgcggctccccgggaggacggacaacgagatc 490
Query: 115 aagaatctatggaactcgtgcatcaagaagaagct 149
||||| | |||||| | |||||||||||||||
Sbjct: 491 aagaaccactggaacacacacatcaagaagaagct 525
>dbj|AK111788.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023093J22, full
insert sequence
Length = 1294
Score = 38.2 bits (19), Expect = 4.2
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 79 gcagcgcagctgccagggaggac 101
||||| |||||||||||||||||
Sbjct: 401 gcagcacagctgccagggaggac 423
>emb|AL844874.1|CNS08CAX Oryza sativa chromosome 12, . BAC OSJNBa0041K23 of library OSJNBa from
chromosome 12 of cultivar Nipponbare of ssp. japonica of
Oryza sativa (rice), complete sequence
Length = 137936
Score = 38.2 bits (19), Expect = 4.2
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 346 aagaatcgtgctgaaacaccaaa 368
|||||| ||||||||||||||||
Sbjct: 84417 aagaatggtgctgaaacaccaaa 84395
>emb|AL928753.3|CNS08CBQ Oryza sativa chromosome 12, . BAC OSJNBb0076G11 of library OSJNBb
from chromosome 12 of cultivar Nipponbare of ssp.
japonica of Oryza sativa (rice), complete sequence
Length = 135323
Score = 38.2 bits (19), Expect = 4.2
Identities = 28/31 (90%)
Strand = Plus / Plus
Query: 89 tgccagggaggactgataatgagatcaagaa 119
||||||||||||| || || |||||||||||
Sbjct: 8964 tgccagggaggaccgacaacgagatcaagaa 8994
>dbj|AP006265.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
clone:OJ1112_E06
Length = 95069
Score = 38.2 bits (19), Expect = 4.2
Identities = 49/59 (83%)
Strand = Plus / Minus
Query: 91 ccagggaggactgataatgagatcaagaatctatggaactcgtgcatcaagaagaagct 149
|||||||| || || || ||||||||||| | |||||| || |||||||||||||||
Sbjct: 43212 ccagggagaacagacaacgagatcaagaaccattggaacacgcacatcaagaagaagct 43154
>dbj|AP004704.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
clone:P0544G09
Length = 137481
Score = 38.2 bits (19), Expect = 4.2
Identities = 49/59 (83%)
Strand = Plus / Minus
Query: 91 ccagggaggactgataatgagatcaagaatctatggaactcgtgcatcaagaagaagct 149
|||||||| || || || ||||||||||| | |||||| || |||||||||||||||
Sbjct: 106758 ccagggagaacagacaacgagatcaagaaccattggaacacgcacatcaagaagaagct 106700
>dbj|AP005321.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
clone:P0650H04
Length = 134533
Score = 38.2 bits (19), Expect = 4.2
Identities = 55/67 (82%)
Strand = Plus / Plus
Query: 83 cgcagctgccagggaggactgataatgagatcaagaatctatggaactcgtgcatcaaga 142
|||| ||||| || ||||| || || ||||||||||| | |||||| || ||||||||
Sbjct: 77853 cgcacctgccgggcaggacggacaacgagatcaagaaccactggaacacgcacatcaaga 77912
Query: 143 agaagct 149
|||||||
Sbjct: 77913 agaagct 77919
>dbj|AP005421.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
clone:P0435D08
Length = 148912
Score = 38.2 bits (19), Expect = 4.2
Identities = 55/67 (82%)
Strand = Plus / Plus
Query: 83 cgcagctgccagggaggactgataatgagatcaagaatctatggaactcgtgcatcaaga 142
|||| ||||| || ||||| || || ||||||||||| | |||||| || ||||||||
Sbjct: 129056 cgcacctgccgggcaggacggacaacgagatcaagaaccactggaacacgcacatcaaga 129115
Query: 143 agaagct 149
|||||||
Sbjct: 129116 agaagct 129122
>gb|AC147962.1| Oryza sativa chromosome 3 BAC OSJNBa0083K01 genomic sequence, complete
sequence
Length = 167239
Score = 38.2 bits (19), Expect = 4.2
Identities = 31/35 (88%)
Strand = Plus / Minus
Query: 85 cagctgccagggaggactgataatgagatcaagaa 119
|||||||| |||||||| || || |||||||||||
Sbjct: 64036 cagctgccggggaggacggacaacgagatcaagaa 64002
>ref|NT_107150.1| Oryza sativa (japonica cultivar-group)
Length = 2060995
Score = 38.2 bits (19), Expect = 4.2
Identities = 28/31 (90%)
Strand = Plus / Minus
Query: 89 tgccagggaggactgataatgagatcaagaa 119
||||||||||||| || || |||||||||||
Sbjct: 1681702 tgccagggaggaccgacaacgagatcaagaa 1681672
>ref|NT_107156.1| Oryza sativa (japonica cultivar-group)
Length = 368479
Score = 38.2 bits (19), Expect = 4.2
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 346 aagaatcgtgctgaaacaccaaa 368
|||||| ||||||||||||||||
Sbjct: 84417 aagaatggtgctgaaacaccaaa 84395
>gb|AACV01017741.1| Oryza sativa (japonica cultivar-group) chromosome 8 Ctg017741, whole
genome shotgun sequence
Length = 42294
Score = 38.2 bits (19), Expect = 4.2
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 79 gcagcgcagctgccagggaggac 101
||||| |||||||||||||||||
Sbjct: 13634 gcagcacagctgccagggaggac 13656
>gb|AACV01018966.1| Oryza sativa (japonica cultivar-group) chromosome 8 Ctg018966, whole
genome shotgun sequence
Length = 28699
Score = 38.2 bits (19), Expect = 4.2
Identities = 49/59 (83%)
Strand = Plus / Plus
Query: 91 ccagggaggactgataatgagatcaagaatctatggaactcgtgcatcaagaagaagct 149
|||||||| || || || ||||||||||| | |||||| || |||||||||||||||
Sbjct: 15412 ccagggagaacagacaacgagatcaagaaccattggaacacgcacatcaagaagaagct 15470
>gb|AACV01019923.1| Oryza sativa (japonica cultivar-group) chromosome 9 Ctg019923, whole
genome shotgun sequence
Length = 15129
Score = 38.2 bits (19), Expect = 4.2
Identities = 55/67 (82%)
Strand = Plus / Minus
Query: 83 cgcagctgccagggaggactgataatgagatcaagaatctatggaactcgtgcatcaaga 142
|||| ||||| || ||||| || || ||||||||||| | |||||| || ||||||||
Sbjct: 5325 cgcacctgccgggcaggacggacaacgagatcaagaaccactggaacacgcacatcaaga 5266
Query: 143 agaagct 149
|||||||
Sbjct: 5265 agaagct 5259
>gb|AACV01024035.1| Oryza sativa (japonica cultivar-group) chromosome 12 Ctg024035, whole
genome shotgun sequence
Length = 26834
Score = 38.2 bits (19), Expect = 4.2
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 346 aagaatcgtgctgaaacaccaaa 368
|||||| ||||||||||||||||
Sbjct: 12268 aagaatggtgctgaaacaccaaa 12290
>gb|AACV01025277.1| Oryza sativa (japonica cultivar-group) chromosome 12 Ctg025277, whole
genome shotgun sequence
Length = 11142
Score = 38.2 bits (19), Expect = 4.2
Identities = 28/31 (90%)
Strand = Plus / Plus
Query: 89 tgccagggaggactgataatgagatcaagaa 119
||||||||||||| || || |||||||||||
Sbjct: 5465 tgccagggaggaccgacaacgagatcaagaa 5495
>ref|XM_480985.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 951
Score = 38.2 bits (19), Expect = 4.2
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 79 gcagcgcagctgccagggaggac 101
||||| |||||||||||||||||
Sbjct: 280 gcagcacagctgccagggaggac 302
>ref|XM_483654.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 789
Score = 38.2 bits (19), Expect = 4.2
Identities = 49/59 (83%)
Strand = Plus / Plus
Query: 91 ccagggaggactgataatgagatcaagaatctatggaactcgtgcatcaagaagaagct 149
|||||||| || || || ||||||||||| | |||||| || |||||||||||||||
Sbjct: 289 ccagggagaacagacaacgagatcaagaaccattggaacacgcacatcaagaagaagct 347
>ref|XM_483655.1| Oryza sativa (japonica cultivar-group), mRNA
Length = 789
Score = 38.2 bits (19), Expect = 4.2
Identities = 49/59 (83%)
Strand = Plus / Plus
Query: 91 ccagggaggactgataatgagatcaagaatctatggaactcgtgcatcaagaagaagct 149
|||||||| || || || ||||||||||| | |||||| || |||||||||||||||
Sbjct: 289 ccagggagaacagacaacgagatcaagaaccattggaacacgcacatcaagaagaagct 347
>ref|NT_107083.1| Oryza sativa (japonica cultivar-group)
Length = 598321
Score = 38.2 bits (19), Expect = 4.2
Identities = 55/67 (82%)
Strand = Plus / Plus
Query: 83 cgcagctgccagggaggactgataatgagatcaagaatctatggaactcgtgcatcaaga 142
|||| ||||| || ||||| || || ||||||||||| | |||||| || ||||||||
Sbjct: 423365 cgcacctgccgggcaggacggacaacgagatcaagaaccactggaacacgcacatcaaga 423424
Query: 143 agaagct 149
|||||||
Sbjct: 423425 agaagct 423431
>ref|NT_107174.1| Oryza sativa (japonica cultivar-group)
Length = 4376475
Score = 38.2 bits (19), Expect = 4.2
Identities = 31/35 (88%)
Strand = Plus / Plus
Query: 85 cagctgccagggaggactgataatgagatcaagaa 119
|||||||| |||||||| || || |||||||||||
Sbjct: 1609346 cagctgccggggaggacggacaacgagatcaagaa 1609380
>ref|XM_507321.1| PREDICTED Oryza sativa (japonica cultivar-group), P0544G09.27 mRNA
Length = 970
Score = 38.2 bits (19), Expect = 4.2
Identities = 49/59 (83%)
Strand = Plus / Plus
Query: 91 ccagggaggactgataatgagatcaagaatctatggaactcgtgcatcaagaagaagct 149
|||||||| || || || ||||||||||| | |||||| || |||||||||||||||
Sbjct: 163 ccagggagaacagacaacgagatcaagaaccattggaacacgcacatcaagaagaagct 221
>dbj|AP005495.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
clone:OSJNBb0003H03
Length = 157905
Score = 38.2 bits (19), Expect = 4.2
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 79 gcagcgcagctgccagggaggac 101
||||| |||||||||||||||||
Sbjct: 73747 gcagcacagctgccagggaggac 73769
>ref|NT_107239.1| Oryza sativa (japonica cultivar-group)
Length = 28196693
Score = 38.2 bits (19), Expect = 4.2
Identities = 49/59 (83%)
Strand = Plus / Minus
Query: 91 ccagggaggactgataatgagatcaagaatctatggaactcgtgcatcaagaagaagct 149
|||||||| || || || ||||||||||| | |||||| || |||||||||||||||
Sbjct: 27241876 ccagggagaacagacaacgagatcaagaaccattggaacacgcacatcaagaagaagct 27241818
Score = 38.2 bits (19), Expect = 4.2
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 79 gcagcgcagctgccagggaggac 101
||||| |||||||||||||||||
Sbjct: 8830963 gcagcacagctgccagggaggac 8830985
>gb|CH401282.1| Oryza sativa (japonica cultivar-group) chromosome 12 scaffold000119
genomic scaffold, whole genome shotgun sequence
Length = 4546750
Score = 38.2 bits (19), Expect = 4.2
Identities = 28/31 (90%)
Strand = Plus / Minus
Query: 89 tgccagggaggactgataatgagatcaagaa 119
||||||||||||| || || |||||||||||
Sbjct: 122053 tgccagggaggaccgacaacgagatcaagaa 122023
>gb|CH401272.1| Oryza sativa (japonica cultivar-group) chromosome 12 scaffold000109 genomic
scaffold, whole genome shotgun sequence
Length = 5753019
Score = 38.2 bits (19), Expect = 4.2
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 346 aagaatcgtgctgaaacaccaaa 368
|||||| ||||||||||||||||
Sbjct: 3268727 aagaatggtgctgaaacaccaaa 3268705
>gb|CH401242.1| Oryza sativa (japonica cultivar-group) chromosome 9 scaffold000079 genomic
scaffold, whole genome shotgun sequence
Length = 12069826
Score = 38.2 bits (19), Expect = 4.2
Identities = 55/67 (82%)
Strand = Plus / Plus
Query: 83 cgcagctgccagggaggactgataatgagatcaagaatctatggaactcgtgcatcaaga 142
|||| ||||| || ||||| || || ||||||||||| | |||||| || ||||||||
Sbjct: 3369454 cgcacctgccgggcaggacggacaacgagatcaagaaccactggaacacgcacatcaaga 3369513
Query: 143 agaagct 149
|||||||
Sbjct: 3369514 agaagct 3369520
>gb|CH401230.1| Oryza sativa (japonica cultivar-group) chromosome 8 scaffold000067 genomic
scaffold, whole genome shotgun sequence
Length = 19501165
Score = 38.2 bits (19), Expect = 4.2
Identities = 49/59 (83%)
Strand = Plus / Minus
Query: 91 ccagggaggactgataatgagatcaagaatctatggaactcgtgcatcaagaagaagct 149
|||||||| || || || ||||||||||| | |||||| || |||||||||||||||
Sbjct: 18625027 ccagggagaacagacaacgagatcaagaaccattggaacacgcacatcaagaagaagct 18624969
Score = 38.2 bits (19), Expect = 4.2
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 79 gcagcgcagctgccagggaggac 101
||||| |||||||||||||||||
Sbjct: 875913 gcagcacagctgccagggaggac 875935
>gb|CM000149.1| Oryza sativa (japonica cultivar-group) chromosome 12, whole genome shotgun
sequence
Length = 23730396
Score = 38.2 bits (19), Expect = 4.2
Identities = 28/31 (90%)
Strand = Plus / Minus
Query: 89 tgccagggaggactgataatgagatcaagaa 119
||||||||||||| || || |||||||||||
Sbjct: 19305699 tgccagggaggaccgacaacgagatcaagaa 19305669
Score = 38.2 bits (19), Expect = 4.2
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 346 aagaatcgtgctgaaacaccaaa 368
|||||| ||||||||||||||||
Sbjct: 3268727 aagaatggtgctgaaacaccaaa 3268705
>gb|CM000146.1| Oryza sativa (japonica cultivar-group) chromosome 9, whole genome shotgun
sequence
Length = 21543637
Score = 38.2 bits (19), Expect = 4.2
Identities = 55/67 (82%)
Strand = Plus / Plus
Query: 83 cgcagctgccagggaggactgataatgagatcaagaatctatggaactcgtgcatcaaga 142
|||| ||||| || ||||| || || ||||||||||| | |||||| || ||||||||
Sbjct: 12843265 cgcacctgccgggcaggacggacaacgagatcaagaaccactggaacacgcacatcaaga 12843324
Query: 143 agaagct 149
|||||||
Sbjct: 12843325 agaagct 12843331
>gb|CM000145.1| Oryza sativa (japonica cultivar-group) chromosome 8, whole genome shotgun
sequence
Length = 27103171
Score = 38.2 bits (19), Expect = 4.2
Identities = 49/59 (83%)
Strand = Plus / Minus
Query: 91 ccagggaggactgataatgagatcaagaatctatggaactcgtgcatcaagaagaagct 149
|||||||| || || || ||||||||||| | |||||| || |||||||||||||||
Sbjct: 26227033 ccagggagaacagacaacgagatcaagaaccattggaacacgcacatcaagaagaagct 26226975
Score = 38.2 bits (19), Expect = 4.2
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 79 gcagcgcagctgccagggaggac 101
||||| |||||||||||||||||
Sbjct: 8477919 gcagcacagctgccagggaggac 8477941
>emb|Y11351.1|OSMYB1402 O.sativa mRNA for myb factor, 1402 bp
Length = 1402
Score = 38.2 bits (19), Expect = 4.2
Identities = 55/67 (82%)
Strand = Plus / Plus
Query: 83 cgcagctgccagggaggactgataatgagatcaagaatctatggaactcgtgcatcaaga 142
|||| ||||| || ||||| || || ||||||||||| | |||||| || ||||||||
Sbjct: 427 cgcacctgccgggcaggacggacaacgagatcaagaaccactggaacacgcacatcaaga 486
Query: 143 agaagct 149
|||||||
Sbjct: 487 agaagct 493
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
sequence
Length = 28434780
Score = 38.2 bits (19), Expect = 4.2
Identities = 49/59 (83%)
Strand = Plus / Minus
Query: 91 ccagggaggactgataatgagatcaagaatctatggaactcgtgcatcaagaagaagct 149
|||||||| || || || ||||||||||| | |||||| || |||||||||||||||
Sbjct: 27479963 ccagggagaacagacaacgagatcaagaaccattggaacacgcacatcaagaagaagct 27479905
Score = 38.2 bits (19), Expect = 4.2
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 79 gcagcgcagctgccagggaggac 101
||||| |||||||||||||||||
Sbjct: 9063437 gcagcacagctgccagggaggac 9063459
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
sequence
Length = 22696651
Score = 38.2 bits (19), Expect = 4.2
Identities = 55/67 (82%)
Strand = Plus / Plus
Query: 83 cgcagctgccagggaggactgataatgagatcaagaatctatggaactcgtgcatcaaga 142
|||| ||||| || ||||| || || ||||||||||| | |||||| || ||||||||
Sbjct: 13975379 cgcacctgccgggcaggacggacaacgagatcaagaaccactggaacacgcacatcaaga 13975438
Query: 143 agaagct 149
|||||||
Sbjct: 13975439 agaagct 13975445
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
sequence
Length = 27566993
Score = 38.2 bits (19), Expect = 4.2
Identities = 28/31 (90%)
Strand = Plus / Minus
Query: 89 tgccagggaggactgataatgagatcaagaa 119
||||||||||||| || || |||||||||||
Sbjct: 23169433 tgccagggaggaccgacaacgagatcaagaa 23169403
Score = 38.2 bits (19), Expect = 4.2
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 346 aagaatcgtgctgaaacaccaaa 368
|||||| ||||||||||||||||
Sbjct: 3405364 aagaatggtgctgaaacaccaaa 3405342
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
Length = 27492551
Score = 38.2 bits (19), Expect = 4.2
Identities = 28/31 (90%)
Strand = Plus / Minus
Query: 89 tgccagggaggactgataatgagatcaagaa 119
||||||||||||| || || |||||||||||
Sbjct: 23097624 tgccagggaggaccgacaacgagatcaagaa 23097594
Score = 38.2 bits (19), Expect = 4.2
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 346 aagaatcgtgctgaaacaccaaa 368
|||||| ||||||||||||||||
Sbjct: 3405309 aagaatggtgctgaaacaccaaa 3405287
Database: Oryza_nucl_with_EST.fasta
Posted date: May 2, 2006 3:04 PM
Number of letters in database: 2,800,419,916
Number of sequences in database: 438,736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 562,431
Number of Sequences: 438736
Number of extensions: 562431
Number of successful extensions: 12699
Number of sequences better than 10.0: 146
Number of HSP's better than 10.0 without gapping: 176
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 10933
Number of HSP's gapped (non-prelim): 1760
length of query: 480
length of database: 2,800,419,916
effective HSP length: 21
effective length of query: 459
effective length of database: 2,791,206,460
effective search space: 1281163765140
effective search space used: 1281163765140
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)